Merge all branches

Even if we do an override to papi get the proper configure flags for
cross-compiling, the memory fences are not defined for risc-v:

mb.h:67:2: error: #error Need to define rmb for this architecture!

flake.nix

@@ -2,16 +2,25 @@
   inputs.nixpkgs.url = "nixpkgs";
 
   outputs = { self, nixpkgs, ...}:
-  let
-    pkgs = import nixpkgs {
+    let
       # For now we only support x86
       system = "x86_64-linux";
-      overlays = [ self.overlays.default ];
-    };
-  in
+      pkgs = import nixpkgs {
+        inherit system;
+        overlays = [ self.overlays.default ];
+      };
+    in
     {
       bscOverlay = import ./overlay.nix;
       overlays.default = self.bscOverlay;
-      legacyPackages.x86_64-linux = pkgs;
+      # full nixpkgs with our overlay applied
+      legacyPackages.${system} = pkgs;
+
+      hydraJobs = {
+        inherit (self.legacyPackages.${system}.bsc-ci) test pkgs cross;
+      };
+
+      # propagate nixpkgs lib, so we can do bscpkgs.lib
+      inherit (nixpkgs) lib;
     };
 }

overlay.nix

@@ -1,15 +1,22 @@
 final: /* Future last stage */
 prev:  /* Previous stage */
 
-with final.lib;
-
 let
-  callPackage = final.callPackage;
+  inherit (prev.lib) collect isDerivation mapAttrs filterAttrs;
+
+  inherit (final) callPackage;
 
   mkDeps = name: pkgs: final.runCommand name { }
     "printf '%s\n' ${toString (collect (x: x ? outPath) pkgs)} > $out";
 
-  bscPkgs = {
+  mkStrict = drv: if (isDerivation drv && drv ? overrideAttrs && !(drv ? strictDeps))
+    then drv.overrideAttrs { strictDeps = true; }
+    else drv;
+
+  bscPkgs = mapAttrs (_: mkStrict) {
+    aoccUnwrapped = callPackage ./pkgs/aocc/unwrapped.nix { };
+    aocc = callPackage ./pkgs/aocc/default.nix { };
+    stdenvAocc = final.overrideCC final.stdenv final.aocc;
     bench6 = callPackage ./pkgs/bench6/default.nix { };
     bigotes = callPackage ./pkgs/bigotes/default.nix { };
     clangOmpss2 = callPackage ./pkgs/llvm-ompss2/default.nix { };
@@ -17,8 +24,9 @@ let
     clangOmpss2Nodes = callPackage ./pkgs/llvm-ompss2/default.nix { ompss2rt = final.nodes; openmp = final.openmp; };
     clangOmpss2NodesOmpv = callPackage ./pkgs/llvm-ompss2/default.nix { ompss2rt = final.nodes; openmp = final.openmpv; };
     clangOmpss2Unwrapped = callPackage ./pkgs/llvm-ompss2/clang.nix { };
+    clsparse = callPackage ./pkgs/clsparse/package.nix { };
     #extrae = callPackage ./pkgs/extrae/default.nix { }; # Broken and outdated
-    #gpi-2 = callPackage ./pkgs/gpi-2/default.nix { }; # Broken: https://jungle.bsc.es/git/rarias/bscpkgs/issues/7
+    gpi-2 = callPackage ./pkgs/gpi-2/default.nix { };
     intel-apt = callPackage ./pkgs/intel-oneapi/packages.nix { };
     intelPackages_2023 = callPackage ./pkgs/intel-oneapi/2023.nix { };
     intelPackages_2024 = final.intel-apt.hpckit_2024;
@@ -49,11 +57,23 @@ let
     stdenvClangOmpss2Nanos6 = final.stdenv.override { cc = final.clangOmpss2Nanos6; allowedRequisites = null; };
     stdenvClangOmpss2Nodes = final.stdenv.override { cc = final.clangOmpss2Nodes; allowedRequisites = null; };
     stdenvClangOmpss2NodesOmpv = final.stdenv.override { cc = final.clangOmpss2NodesOmpv; allowedRequisites = null; };
-    #tagaspi = callPackage ./pkgs/tagaspi/default.nix { }; # Broken due gpi-2
+    tagaspi = callPackage ./pkgs/tagaspi/default.nix { };
     tampi = callPackage ./pkgs/tampi/default.nix { };
+    tacuda = callPackage ./pkgs/tacuda/default.nix { };
+    taopencl = callPackage ./pkgs/taopencl/default.nix { };
     tasycl = callPackage ./pkgs/tasycl/default.nix { };
     tasycl-acpp = callPackage ./pkgs/tasycl/default.nix { useIntel = false; };
     wxparaver = callPackage ./pkgs/paraver/default.nix { };
+
+    # Fix for RISC-V cross compilation
+    # TODO: remove once we update to 25.11
+    # https://github.com/NixOS/nixpkgs/commit/d9c222c81435b
+    prrte = prev.prrte.overrideAttrs (prevAttrs: {
+      configureFlags = (prevAttrs.configureFlags or []) ++ [
+        "--with-pmix=${prev.lib.getDev final.pmix}"
+        "--with-pmix-libdir=${prev.lib.getLib final.pmix}/lib"
+      ];
+    });
   };
 
 in bscPkgs // {
@@ -106,15 +126,21 @@ in bscPkgs // {
       };
     };
 
-    pkgs = final.runCommand "ci-pkgs" { }
+    pkgs = filterAttrs (_: isDerivation) bscPkgs;
+
+    pkgsList = final.runCommand "ci-pkgs" { }
       "printf '%s\n' ${toString (collect isDerivation bscPkgs)} > $out";
 
     tests = final.runCommand "ci-tests" { }
       "printf '%s\n' ${toString (collect isDerivation final.bsc-ci.test)} > $out";
 
+    cross = prev.lib.genAttrs [ "riscv64" ] (target:
+      final.pkgsCross.${target}.bsc-ci.pkgs
+    );
+
     all = final.runCommand "ci-all" { }
     ''
-      deps="${toString [ final.bsc-ci.pkgs final.bsc-ci.tests ]}"
+      deps="${toString [ final.bsc-ci.pkgsList final.bsc-ci.tests ]}"
       cat $deps
       printf '%s\n' $deps > $out
     '';

pkgs/aocc/default.nix

@@ -0,0 +1,16 @@
+{ wrapCCWith
+, aoccUnwrapped
+}:
+
+let
+  cc = aoccUnwrapped;
+in wrapCCWith {
+  inherit cc;
+
+  extraBuildCommands = ''
+    echo "-isystem ${cc}/include" >> $out/nix-support/cc-cflags
+
+    wrap aocc   $wrapper $ccPath/clang
+    wrap aocc++ $wrapper $ccPath/clang++
+  '';
+}

pkgs/aocc/unwrapped.nix

@@ -0,0 +1,51 @@
+{ lib
+, fetchurl
+, stdenv
+, autoPatchelfHook
+, rocmPackages
+, zlib
+, libffi
+, elfutils
+}:
+
+let
+  # in newer nixpkgs the runtime is hsakmt
+  rocmRuntime =
+    if rocmPackages ? hsakmt then
+      rocmPackages.hsakmt
+    else
+      rocmPackages.rocm-runtime;
+in
+stdenv.mkDerivation {
+  pname = "aocc-compiler";
+  version = "5.0.0";
+
+  src = fetchurl {
+    url = "https://download.amd.com/developer/eula/aocc/aocc-5-0/aocc-compiler-5.0.0.tar";
+    sha256 = "sha256-lm+sLSx1np3m6WnBCtp6ezBsET9/HgfqN2gp7IY4Dao=";
+  };
+
+  nativeBuildInputs = [ autoPatchelfHook ];
+  buildInputs = [
+    elfutils
+    zlib
+    rocmRuntime
+    stdenv.cc.cc.lib
+  ];
+  phases = [ "unpackPhase" "installPhase" "fixupPhase" ];
+  dontStrip = true;
+
+  installPhase = ''
+    mkdir -p $out
+    cp -a . $out/
+
+    ln -s ${lib.getLib libffi}/lib/libffi.so $out/lib/libffi.so.6
+  '';
+
+  passthru = {
+    inherit rocmRuntime;
+    isClang = true; # Needed for wrapCCWith
+  };
+
+  meta.mainProgram = "clang";
+}

pkgs/bench6/default.nix

@@ -27,10 +27,13 @@ stdenv.mkDerivation rec {
     rev = gitCommit;
   };
 
-  buildInputs = [
-    bigotes
+  nativeBuildInputs = [
     cmake
     clangOmpss2
+  ];
+
+  buildInputs = [
+    bigotes
     openmp
     openmpv
     nanos6

pkgs/bigotes/default.nix

@@ -4,7 +4,7 @@
 , cmake
 }:
 
-stdenv.mkDerivation rec {
+stdenv.mkDerivation {
   pname = "bigotes";
   version = "9dce13";
   src = fetchFromGitHub {
@@ -13,5 +13,5 @@ stdenv.mkDerivation rec {
     rev = "9dce13446a8da30bea552d569d260d54e0188518";
     sha256 = "sha256-ktxM3pXiL8YXSK+/IKWYadijhYXqGoLY6adLk36iigE=";
   };
-  buildInputs = [ cmake ];
+  nativeBuildInputs = [ cmake ];
 }

pkgs/clsparse/install_target.patch

@@ -0,0 +1,53 @@
+diff --git a/CMakeLists.txt b/CMakeLists.txt
+index 3d139ed..15ffc14 100644
+--- a/CMakeLists.txt
++++ b/CMakeLists.txt
+@@ -176,32 +179,22 @@ if( BUILD_clSPARSE OR BUILD_SAMPLES )
+   if( BUILD_clSPARSE )
+     message( STATUS "Setting up clSPARSE external..." )
+ 
+-    if ( BUILD_SAMPLES )
+-      # If the user elects to build samples, then we must build and install clSPARSE
+-      # The install location is set as a subdirectory of the SuperBuild
+-      ExternalProject_Add(
+-        clSPARSE
+-        DEPENDS ${clSPARSE.Dependencies}
+-        SOURCE_DIR ${PROJECT_SOURCE_DIR}/src
+-        BINARY_DIR clSPARSE-build
+-        INSTALL_DIR clSPARSE-package
+-        CMAKE_ARGS ${clSPARSE.Cmake.Args} -DCMAKE_BUILD_TYPE=${CMAKE_BUILD_TYPE}
+-        -DBUILD_CLVERSION=${BUILD_CLVERSION} -DCMAKE_INSTALL_PREFIX=<INSTALL_DIR>
+-        -DUSE_SYSTEM_CL2HPP:BOOL=${USE_SYSTEM_CL2HPP}
+-      )
+-    else( )
+-      # If the user does not want to build samples, then build clSPARSE but don't automatically
+-      # install it
+-      ExternalProject_Add(
+-        clSPARSE
+-        DEPENDS ${clSPARSE.Dependencies}
+-        SOURCE_DIR ${PROJECT_SOURCE_DIR}/src
+-        BINARY_DIR clSPARSE-build
+-        CMAKE_ARGS ${clSPARSE.Cmake.Args} -DCMAKE_BUILD_TYPE=${CMAKE_BUILD_TYPE}
+-        -DBUILD_CLVERSION=${BUILD_CLVERSION} -DUSE_SYSTEM_CL2HPP:BOOL=${USE_SYSTEM_CL2HPP}
+-        INSTALL_COMMAND ""
+-      )
+-    endif( )
++    ExternalProject_Add(
++      clSPARSE
++      DEPENDS ${clSPARSE.Dependencies}
++      SOURCE_DIR ${PROJECT_SOURCE_DIR}/src
++      BINARY_DIR clSPARSE-build
++      INSTALL_DIR clSPARSE-package
++      CMAKE_ARGS ${clSPARSE.Cmake.Args} -DCMAKE_BUILD_TYPE=${CMAKE_BUILD_TYPE}
++      -DBUILD_CLVERSION=${BUILD_CLVERSION} -DCMAKE_INSTALL_PREFIX=<INSTALL_DIR>
++      -DUSE_SYSTEM_CL2HPP:BOOL=${USE_SYSTEM_CL2HPP}
++    )
++
++    install(
++      DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}/clSPARSE-package/
++      DESTINATION ${CMAKE_INSTALL_PREFIX}
++      USE_SOURCE_PERMISSIONS
++    )
+ 
+   endif( )
+ 

pkgs/clsparse/package.nix

@@ -0,0 +1,70 @@
+{
+  lib,
+  stdenv,
+  fetchFromGitHub,
+  fetchpatch,
+  boost,
+  gtest,
+  ocl-icd,
+  opencl-headers,
+  opencl-clhpp,
+  cmake,
+}:
+
+stdenv.mkDerivation rec {
+  pname = "clsparse";
+  version = "0.10.2.0";
+
+  src = fetchFromGitHub {
+    owner = "clMathLibraries";
+    repo = "clSPARSE";
+    rev = "v${version}";
+    hash = "sha256-jIauCtUyPEIx7pFI3qH0WagV+t/fvro0OsGgONBJm0s=";
+  };
+
+  patches = [
+    ./pass_include_dir.patch
+    ./install_target.patch
+    (fetchpatch {
+      name = "remove-gettypecode.patch";
+      url = "https://patch-diff.githubusercontent.com/raw/clMathLibraries/clSPARSE/pull/210.patch";
+      hash = "sha256-9Q+tk7RMdWE4MCnbvWlsI0MIgBYKIWR2jIC1bICtIjU=";
+    })
+  ];
+
+  postInstallPhase = ''
+    mv $installDir/lib64 lib
+    ln -s lib/ lib64
+  '';
+
+  env.NIX_CFLAGS_COMPILE = "-std=c++17";
+
+  nativeBuildInputs = [
+    cmake
+  ];
+
+  buildInputs = [
+    boost
+    ocl-icd
+    opencl-headers
+    opencl-clhpp
+  ];
+
+  cmakeFlags = [
+    "-DBUILD_Boost=OFF"
+    "-DBUILD_gMock=OFF"
+    "-DBUILD_MTX=OFF"
+    "-DBUILD_SAMPLES=OFF"
+    "-DUSE_SYSTEM_CL2HPP=ON"
+    "-DGMOCK_ROOT=${gtest}"
+    "-DGTEST_INCLUDE_DIR=${gtest.src}/googletest/include"
+  ];
+
+  meta = {
+    description = "A software library containing Sparse functions written in OpenCL";
+    homepage = "https://github.com/clMathLibraries/clSPARSE";
+    license = lib.licenses.asl20;
+    maintainers = with lib.maintainers; [ leixb ];
+    platforms = lib.platforms.all;
+  };
+}

pkgs/clsparse/pass_include_dir.patch

@@ -0,0 +1,14 @@
+diff --git a/CMakeLists.txt b/CMakeLists.txt
+index 3d139ed..b7ea2d3 100644
+--- a/CMakeLists.txt
++++ b/CMakeLists.txt
+@@ -132,6 +132,9 @@ else( )
+       set( GMOCK_ROOT "$ENV{GMOCK_ROOT}" )
+     endif( )
+     list( APPEND clSPARSE.Cmake.Args -DGTEST_ROOT=${GMOCK_ROOT} )
++    if( DEFINED GTEST_INCLUDE_DIR )
++      list( APPEND clSPARSE.Cmake.Args -DGTEST_INCLUDE_DIR=${GTEST_INCLUDE_DIR} )
++    endif( )
+   endif( )
+ endif( )
+ 

pkgs/extrae/default.nix

@@ -20,6 +20,7 @@
 #, python3Packages
 , installShellFiles
 , symlinkJoin
+, enablePapi ? stdenv.hostPlatform == stdenv.buildPlatform # Disabled when cross-compiling
 }:
 
 let
@@ -87,7 +88,7 @@ stdenv.mkDerivation rec {
       --enable-sampling
       --with-unwind=${libunwind.dev}
       --with-xml-prefix=${libxml2.dev}
-      --with-papi=${papi}
+      ${lib.optionalString enablePapi "--with-papi=${papi}"}
       ${if (mpi != null) then ''--with-mpi=${mpi}''
         else ''--without-mpi''}
       --without-dyninst)

pkgs/gpi-2/default.nix

@@ -34,6 +34,8 @@ stdenv.mkDerivation rec {
 
   enableParallelBuilding = true;
 
+  patches = [ ./rdma-core.patch ./max-mem.patch ];
+
   preConfigure = ''
     patchShebangs autogen.sh
     ./autogen.sh

pkgs/gpi-2/max-mem.patch

@@ -0,0 +1,10 @@
+--- a/tests/tests/segments/max_mem.c	2025-09-12 13:30:53.449353591 +0200
++++ b/tests/tests/segments/max_mem.c	2025-09-12 13:33:49.750352401 +0200
+@@ -1,5 +1,7 @@
+ #include <test_utils.h>
+ 
++gaspi_size_t gaspi_get_system_mem (void);
++
+ /* Test allocates 45% of system memory and creates a segment that
+    large or if several ranks per node exist, divided among that
+    number */

pkgs/gpi-2/rdma-core.patch

@@ -0,0 +1,12 @@
+--- a/src/devices/ib/GPI2_IB.h	2025-09-12 13:25:31.564181121 +0200
++++ b/src/devices/ib/GPI2_IB.h	2025-09-12 13:24:49.105422150 +0200
+@@ -26,6 +26,9 @@ along with GPI-2. If not, see <http://ww
+ 
+ #include "GPI2_Dev.h"
+ 
++/* Missing prototype as driver.h is now private */
++int ibv_read_sysfs_file(const char *dir, const char *file, char *buf, size_t size);
++
+ #define GASPI_GID_INDEX   (0)
+ #define PORT_LINK_UP      (5)
+ #define MAX_INLINE_BYTES  (128)

pkgs/intel-oneapi/2023.nix

@@ -96,14 +96,17 @@ let
       "intel-oneapi-mpi-${version}"
     ];
 
-    buildInputs = [
+    nativeBuildInputs = [
+      autoPatchelfHook
       rsync
+    ];
+
+    buildInputs = [
       libfabric
       zlib
       stdenv.cc.cc.lib
     ];
 
-    nativeBuildInputs = [ autoPatchelfHook ];
     phases = [ "installPhase" "fixupPhase" ];
     dontStrip = true;
     installPhase = ''
@@ -142,7 +145,6 @@ let
 
     buildInputs = [
       intel-mpi
-      rsync
       libffi_3_3
       libelf
       libxml2
@@ -150,7 +152,10 @@ let
       stdenv.cc.cc.lib
     ];
 
-    nativeBuildInputs = [ autoPatchelfHook ];
+    nativeBuildInputs = [
+      autoPatchelfHook
+      rsync
+    ];
     phases = [ "installPhase" "fixupPhase" ];
     dontStrip = true;
 
@@ -180,7 +185,6 @@ let
     buildInputs = [
       intel-mpi
       intel-tbb
-      rsync
       libffi_3_3
       libelf
       libxml2
@@ -189,7 +193,10 @@ let
       stdenv.cc.cc.lib
     ];
 
-    nativeBuildInputs = [ autoPatchelfHook ];
+    nativeBuildInputs = [
+      autoPatchelfHook
+      rsync
+    ];
     phases = [ "installPhase" "fixupPhase" ];
     dontStrip = true;
 
@@ -242,7 +249,6 @@ let
     buildInputs = [
       intel-mpi
       intel-compiler-shared
-      rsync
       libffi_3_3
       libelf
       libxml2
@@ -250,7 +256,10 @@ let
       stdenv.cc.cc.lib
     ];
 
-    nativeBuildInputs = [ autoPatchelfHook ];
+    nativeBuildInputs = [
+      autoPatchelfHook
+      rsync
+    ];
 
     phases = [ "installPhase" "fixupPhase" ];
 
@@ -299,9 +308,6 @@ let
       "intel-oneapi-compiler-dpcpp-cpp-and-cpp-classic-common-${version}"
       "intel-oneapi-compiler-dpcpp-cpp-and-cpp-classic-runtime-${version}"
       "intel-oneapi-compiler-dpcpp-cpp-classic-fortran-shared-runtime-${version}"
-      "intel-oneapi-compiler-shared-${version}"
-      "intel-oneapi-compiler-shared-common-${version}"
-      "intel-oneapi-compiler-shared-runtime-${version}"
     ];
     dontCheckForBrokenSymlinks = true;
     # From https://aur.archlinux.org/packages/intel-oneapi-compiler:
@@ -319,16 +325,15 @@ let
     # - intel-oneapi-compiler-fortran-common-2023.0.0-2023.0.0-25370_all.deb
     # - intel-oneapi-compiler-fortran-runtime-2023.0.0-2023.0.0-25370_amd64.deb
     # - intel-oneapi-compiler-fortran-runtime-2023.0.0-25370_amd64.deb
-    # + intel-oneapi-compiler-shared-2023.0.0-2023.0.0-25370_amd64.deb
-    # + intel-oneapi-compiler-shared-common-2023.0.0-2023.0.0-25370_all.deb
-    # + intel-oneapi-compiler-shared-runtime-2023.0.0-2023.0.0-25370_amd64.deb
+    # - intel-oneapi-compiler-shared-2023.0.0-2023.0.0-25370_amd64.deb
+    # - intel-oneapi-compiler-shared-common-2023.0.0-2023.0.0-25370_all.deb
+    # - intel-oneapi-compiler-shared-runtime-2023.0.0-2023.0.0-25370_amd64.deb
     # - intel-oneapi-dpcpp-cpp-2023.0.0-2023.0.0-25370_amd64.deb
     # - intel-oneapi-openmp-2023.0.0-2023.0.0-25370_amd64.deb
     # - intel-oneapi-openmp-common-2023.0.0-2023.0.0-25370_all.deb
 
     buildInputs = [
       intel-compiler-shared
-      rsync
       libffi_3_3
       libelf
       libxml2
@@ -336,7 +341,10 @@ let
       stdenv.cc.cc.lib
     ];
 
-    nativeBuildInputs = [ autoPatchelfHook ];
+    nativeBuildInputs = [
+      autoPatchelfHook
+      rsync
+    ];
     autoPatchelfIgnoreMissingDeps = [ "libtbb.so.12" "libtbbmalloc.so.2" "libze_loader.so.1" ];
 
     phases = [ "installPhase" "fixupPhase" ];
@@ -388,15 +396,6 @@ let
         echo "-L${intel-compiler-shared}/lib" >> $out/nix-support/cc-ldflags
         echo "-L${cc}/lib" >> $out/nix-support/cc-ldflags
 
-        echo "--gcc-toolchain=${mygcc.cc}" >> $out/nix-support/libcxx-cxxflags
-
-        for dir in ${mygcc.cc}/include/c++/*; do
-          echo "-isystem $dir" >> $out/nix-support/libcxx-cxxflags
-        done
-        for dir in ${mygcc.cc}/include/c++/*/${targetConfig}; do
-          echo "-isystem $dir" >> $out/nix-support/libcxx-cxxflags
-        done
-
         # Need the gcc in the path
         # FIXME: We should find a better way to modify the PATH instead of using
         # this ugly hack. See https://jungle.bsc.es/git/rarias/bscpkgs/issues/9

pkgs/intel-oneapi/patch_intel.nix

@@ -5,7 +5,7 @@
 , autoPatchelfHook
 , wrapCCWith
 , overrideCC
-, gcc
+, gcc13
 , hwloc
 , libelf
 , libffi_3_3
@@ -33,6 +33,8 @@ makeOverridable (
 let
   inherit (builtins) attrValues filter mapAttrs removeAttrs;
 
+  gcc = gcc13;
+
   __components = removeAttrs components ["extraPackages"];
   _components = __components;
   # _components = lib.traceSeqN 2 {
@@ -46,14 +48,25 @@ let
     in (wrapCCWith {
       inherit cc;
       extraBuildCommands = ''
-        echo "-isystem ${cc}/include" >> $out/nix-support/cc-cflags
-        echo "-isystem ${cc}/include/intel64" >> $out/nix-support/cc-cflags
-
         echo "-L${gcc.cc}/lib/gcc/${targetConfig}/${gcc.version}" >> $out/nix-support/cc-ldflags
         echo "-L${gcc.cc.lib}/lib" >> $out/nix-support/cc-ldflags
         echo "-L${cc}/lib" >> $out/nix-support/cc-ldflags
 
-        echo "--gcc-toolchain=${gcc.cc}" >> $out/nix-support/libcxx-cxxflags
+        # echo "--gcc-toolchain=${gcc.cc}" >> $out/nix-support/libcxx-cxxflags
+        echo "--gcc-toolchain=${gcc.cc}" >> $out/nix-support/cc-cflags
+
+        # For some reason, If we don't resolve the realpath things go wrong
+        for stddef in ${cc}/lib/clang/*/include/stddef.h ; do
+          dir=$(dirname $(realpath "$stddef"))
+          echo "-isystem $dir" >> $out/nix-support/cc-cflags
+        done
+
+        echo "-isystem ${cc}/include" >> $out/nix-support/cc-cflags
+        echo "-isystem ${cc}/include/intel64" >> $out/nix-support/cc-cflags
+
+        for dir in ${gcc.cc}/lib/gcc/${targetConfig}/*/include; do
+          echo "-isystem $dir" >> $out/nix-support/cc-cflags
+        done
 
         for dir in ${gcc.cc}/include/c++/*; do
           echo "-isystem $dir" >> $out/nix-support/libcxx-cxxflags
@@ -62,18 +75,12 @@ let
           echo "-isystem $dir" >> $out/nix-support/libcxx-cxxflags
         done
 
-        # Need the gcc in the path
-        echo 'export "PATH=${gcc}/bin:$PATH"' >> $out/nix-support/cc-wrapper-hook
+        # FIXME: We should find a better way to modify the PATH instead of using
+        # this ugly hack. See https://jungle.bsc.es/git/rarias/bscpkgs/issues/9
+        echo 'path_backup="${gcc.cc}/bin:$path_backup"' >> $out/nix-support/cc-wrapper-hook
 
         # Disable hardening by default
         echo "" > $out/nix-support/add-hardening.sh
-
-        # For some reason, If we don't resolve the realpath things go wrong
-        for stddef in ${cc}/lib/clang/*/include/stddef.h ; do
-          dir=$(dirname $(realpath "$stddef"))
-          echo "-isystem $dir" >> $out/nix-support/cc-cflags
-        done
-
       '' + extraBuildCommands;
     } // (removeAttrs args ["cc" "extraBuildCommands" "extraInstall"])
     ).overrideAttrs (old: {
@@ -106,6 +113,8 @@ stdenvNoCC.mkDerivation (finalAttrs: {
 
   autoPatchelfIgnoreMissingDeps = [ "libhwloc.so.5" "libcuda.so.1" "libze_loader.so.1" ];
 
+  dontCheckForBrokenSymlinks = true;
+
   nativeBuildInputs = [ autoPatchelfHook ];
   installPhase = ''
     cp -r $src/opt/intel/oneapi/ $out

pkgs/llvm-ompss2/clang.nix

@@ -43,32 +43,36 @@ let
 
   source = if (useGit) then git else release;
 
-in stdenv.mkDerivation rec {
+in stdenv.mkDerivation {
   pname = "clang-ompss2";
   inherit (source) src version;
 
   enableParallelBuilding = true;
-  isClang = true;
 
   passthru = {
     CC = "clang";
     CXX = "clang++";
+
+    isClang = true;
+    isClangWithOmpss = true;
+
+    inherit gcc zlib;
   };
 
-  isClangWithOmpss = true;
-
-  nativeBuildInputs = [ zlib ];
-
-  buildInputs = [
-    which
+  nativeBuildInputs = [
     bash
+    cmake
+    elfutils
+    llvmPackages_latest.lld
+    pkg-config
     python3
     perl
-    cmake
-    llvmPackages_latest.lld
-    elfutils
+    which
+    zlib
+  ];
+
+  buildInputs = [
     libffi
-    pkg-config
     zlib
     gcc.cc.lib # Required for libstdc++.so.6
   ];

pkgs/llvm-ompss2/default.nix

@@ -2,6 +2,7 @@
   stdenv
 , lib
 , gcc
+, gcc13
 , clangOmpss2Unwrapped
 , writeShellScript
 , openmp ? null
@@ -10,9 +11,9 @@
 , ompss2rt ? null
 }:
 
-with lib;
-
 let
+  inherit (lib) assertMsg optional optionalString;
+
   usingNodesAndOmpv = (openmp.pname == "openmp-v" && ompss2rt.pname == "nodes");
   sameNosv = openmp.nosv == ompss2rt.nosv;
 in
@@ -37,7 +38,8 @@ let
   targetConfig = stdenv.targetPlatform.config;
   inherit gcc;
   cc = clangOmpss2Unwrapped;
-  gccVersion = with versions; let v = gcc.version; in concatStringsSep "." [(major v) (minor v) (patch v)];
+
+  gccVersion = with lib.versions; let v = gcc.version; in concatStringsSep "." [(major v) (minor v) (patch v)];
 
   extraBuildCommands = ''
     echo "-target ${targetConfig}" >> $out/nix-support/cc-cflags
@@ -45,9 +47,6 @@ let
     echo "-L${gcc.cc}/lib/gcc/${targetConfig}/${gccVersion}" >> $out/nix-support/cc-ldflags
     echo "-L${gcc.cc.lib}/lib" >> $out/nix-support/cc-ldflags
 
-    for dir in ${gcc.cc}/lib/gcc/${targetConfig}/*/include; do
-      echo "-isystem $dir" >> $out/nix-support/cc-cflags
-    done
     for dir in ${gcc.cc}/include/c++/*; do
       echo "-isystem $dir" >> $out/nix-support/libcxx-cxxflags
     done
@@ -95,7 +94,8 @@ let
   '';
 
   wrappedCCIntel = wrapCCWith {
-    inherit cc bintools extraPackages;
+    inherit bintools extraPackages;
+    cc = cc.override { gcc = gcc13; }; # Intel uses gcc13, so we have to match it
     # extraPackages adds packages to depsTargetTargetPropagated
     extraBuildCommands = intelExtraBuildCommands + envExports;
   };

pkgs/lmbench/default.nix

@@ -22,7 +22,11 @@ stdenv.mkDerivation rec {
   '';
 
   buildInputs = [ libtirpc ];
-  patches = [ ./fix-install.patch ./gcc-14.patch ];
+  patches = [
+    ./fix-install.patch
+    ./gcc-14.patch
+    ./fix-cross.patch
+  ];
 
   hardeningDisable = [ "all" ];
 
@@ -35,6 +39,8 @@ stdenv.mkDerivation rec {
       CFLAGS=-Wno-implicit-int
       CPPFLAGS=-I${libtirpc.dev}/include/tirpc
       LDFLAGS=-ltirpc
+      CC=${stdenv.cc.targetPrefix}cc
+      AR=${stdenv.cc.targetPrefix}ar
     )
   '';
 

pkgs/lmbench/fix-cross.patch

@@ -0,0 +1,13 @@
+diff --git a/src/Makefile b/src/Makefile
+index 2555014..356eeb3 100644
+--- a/src/Makefile
++++ b/src/Makefile
+@@ -36,7 +36,7 @@ SHELL=/bin/sh
+ 
+ CC=`../scripts/compiler`
+ MAKE=`../scripts/make`
+-AR=ar
++AR?=ar
+ ARCREATE=cr
+ 
+ # base of installation location

pkgs/mcxx/default.nix

@@ -32,19 +32,22 @@ stdenv.mkDerivation rec {
 
   enableParallelBuilding = true;
 
-  buildInputs = [
+  nativeBuildInputs = [
     autoreconfHook
-    nanos6
-    gperf
+    bison
+    flex
     python3
     gfortran
     pkg-config
-    sqlite.dev
-    bison
-    flex
+    gperf
     gcc
   ];
 
+  buildInputs = [
+    nanos6
+    sqlite.dev
+  ];
+
   patches = [ ./intel.patch ];
 
   preConfigure = ''

pkgs/nanos6/default.nix

@@ -16,6 +16,7 @@
 , jemallocNanos6 ? null
 , cachelineBytes ? 64
 , enableGlibcxxDebug ? false
+, enablePapi ? stdenv.hostPlatform == stdenv.buildPlatform # Disabled when cross-compiling
 , useGit ? false
 , gitUrl ? "ssh://git@bscpm04.bsc.es/nanos6/nanos6"
 , gitBranch ? "master"
@@ -47,6 +48,8 @@ let
   };
 
   source = if (useGit) then git else release;
+
+  isCross = stdenv.hostPlatform != stdenv.buildPlatform;
 in
   stdenv.mkDerivation (source // {
     pname = "nanos6";
@@ -71,9 +74,11 @@ in
       "--disable-all-instrumentations"
       "--enable-ovni-instrumentation"
       "--with-ovni=${ovni}"
+      "--with-boost=${boost.dev}"
     ] ++
       (optional enableJemalloc "--with-jemalloc=${jemallocNanos6}") ++
-      (optional enableGlibcxxDebug "CXXFLAGS=-D_GLIBCXX_DEBUG");
+      (optional enableGlibcxxDebug "CXXFLAGS=-D_GLIBCXX_DEBUG") ++
+      (optional isCross "--with-symbol-resolution=ifunc");
 
     postConfigure = lib.optionalString (!enableDebug) ''
       # Disable debug
@@ -88,23 +93,29 @@ in
     dontStrip = enableDebug;
     separateDebugInfo = true;
 
-    buildInputs = [
+    nativeBuildInputs = [
       autoconf
       automake
       libtool
       pkg-config
+
+      # TODO: papi_version is needed for configure:
+      # ./configure: line 27378: papi_version: command not found
+      # This probably breaks cross-compilation
+    ] ++ lib.optionals enablePapi [ papi ];
+
+    buildInputs = [
       boost
       numactl
       hwloc
-      papi
       ovni
-    ];
+    ] ++ lib.optionals enablePapi [ papi ];
 
     # Create a script that sets NANOS6_HOME
     postInstall = ''
       mkdir -p $out/nix-support
       echo "export NANOS6_HOME=$out" >> $out/nix-support/setup-hook
-    ''; 
+    '';
 
     meta = with lib; {
       homepage = "https://github.com/bsc-pm/nanos6";

pkgs/nosv/default.nix

@@ -6,6 +6,8 @@
 , pkg-config
 , numactl
 , hwloc
+, papi
+, enablePapi ? stdenv.hostPlatform == stdenv.buildPlatform # Disabled when cross-compiling
 , cacheline ? 64 # bits
 , ovni ? null
 , useGit ? false
@@ -56,5 +58,5 @@ in
       numactl
       hwloc
       ovni
-    ];
+    ] ++ lib.optionals enablePapi [ papi ];
   }

pkgs/osu/default.nix

@@ -24,9 +24,10 @@ stdenv.mkDerivation rec {
 
   doCheck = true;
   enableParallelBuilding = true;
+  nativeBuildInputs = [ mpiAll ];
   buildInputs = [ mpiAll ];
   hardeningDisable = [ "all" ];
-  configureFlags = [ 
+  configureFlags = [
       "CC=mpicc"
       "CXX=mpicxx"
   ];
@@ -40,7 +41,7 @@ stdenv.mkDerivation rec {
 
   meta = {
     description = "OSU Micro-Benchmarks";
-    homepage = http://mvapich.cse.ohio-state.edu/benchmarks/;
+    homepage = "http://mvapich.cse.ohio-state.edu/benchmarks/";
     maintainers = [ ];
     platforms = lib.platforms.all;
   };

pkgs/ovni/default.nix

@@ -13,8 +13,6 @@
 , useMpi ? (stdenv.buildPlatform.canExecute stdenv.hostPlatform)
 }:
 
-with lib;
-
 let
   release = rec {
     version = "1.12.0";
@@ -45,7 +43,7 @@ in
     postPatch = ''
       patchShebangs --build test/
     '';
-    nativeBuildInputs = [ cmake ];
+    nativeBuildInputs = [ cmake ] ++ lib.optionals (useMpi) [ mpi ];
     buildInputs = lib.optionals (useMpi) [ mpi ];
     cmakeBuildType = if (enableDebug) then "Debug" else "Release";
     cmakeFlags = [

pkgs/paraver/default.nix

@@ -1,7 +1,7 @@
-{
-  stdenv
+{ stdenv
+, fetchFromGitHub
 , autoreconfHook
-, boost186
+, boost
 , libxml2
 , xml2
 , wxGTK32
@@ -11,23 +11,32 @@
 , openssl
 , glibcLocales
 , wrapGAppsHook
+
+, enableDebug ? false
 }:
 
 let
   wx = wxGTK32;
-  boost = boost186;
+  version = "4.12.0";
 in
-stdenv.mkDerivation rec {
+stdenv.mkDerivation {
   pname = "wxparaver";
-  version = "4.11.2";
+  inherit version;
 
-  src = builtins.fetchGit {
-    url = "https://github.com/bsc-performance-tools/wxparaver.git";
-    rev = "129e6b4a4f061e5a319049db8db1620f5de3bd70"; # v4.11.2 (missing tag)
-    ref = "master";
+  src = fetchFromGitHub {
+    owner = "bsc-performance-tools";
+    repo = "wxparaver";
+    rev = "v${version}";
+    sha256 = "sha256-YsO5gsuEFQdki3lQudEqgo5WXOt/fPdvNw5OxZQ86Zo=";
   };
 
-  hardeningDisable = [ "all" ];
+  patches = [
+    ./do-not-steal-focus-on-redraw.patch
+
+    # Fix for boost >=1.87 (thanks to gamezelda)
+    # https://aur.archlinux.org/cgit/aur.git/commit/?h=wxparaver&id=b0dcd08c472536e0a1a3cc1dfbc4c77d9f5e0d47
+    ./fix-boost-87.patch
+  ];
 
   # Fix the PARAVER_HOME variable
   postPatch = ''
@@ -35,13 +44,20 @@ stdenv.mkDerivation rec {
     sed -i '1aexport LOCALE_ARCHIVE="${glibcLocales}/lib/locale/locale-archive"' docs/wxparaver
   '';
 
-  dontStrip = true;
   enableParallelBuilding = true;
 
-  preConfigure = ''
-    export CFLAGS="-O3"
-    export CXXFLAGS="-O3"
-  '';
+  hardeningDisable = [ "all" ];
+
+  dontStrip = true;
+
+  env =
+    let
+      flags = if enableDebug then "-ggdb -Og" else "-O3";
+    in
+    {
+      CFLAGS = flags;
+      CXXFLAGS = flags;
+    };
 
   configureFlags = [
     "--with-boost=${boost}"
@@ -51,19 +67,19 @@ stdenv.mkDerivation rec {
   ];
 
   nativeBuildInputs = [
+    autoconf
+    automake
+    autoreconfHook
     wrapGAppsHook
   ];
 
   buildInputs = [
-    autoreconfHook
     boost
-    libxml2.dev
+    libxml2
     xml2
     wx
-    autoconf
-    automake
     paraverKernel
-    openssl.dev
+    openssl
   ];
 
   postInstall = ''

pkgs/paraver/do-not-steal-focus-on-redraw.patch

@@ -0,0 +1,26 @@
+From 2b185e1b5ce52808b3026334851dbcd5a640ed4d Mon Sep 17 00:00:00 2001
+From: aleixbonerib <aleix.boneribo@bsc.es>
+Date: Mon, 10 Jun 2024 20:59:45 +0200
+Subject: [PATCH] fix: do not set focus on redraw
+
+Some wm can change the window size without focusing. Right now, when the
+plot is resized it takes back focus.
+---
+ src/gtimeline.cpp | 1 -
+ 1 file changed, 1 deletion(-)
+
+diff --git a/src/gtimeline.cpp b/src/gtimeline.cpp
+index 23ebef2..a896066 100644
+--- a/src/gtimeline.cpp
++++ b/src/gtimeline.cpp
+@@ -899,7 +899,6 @@ void gTimeline::redraw()
+ 
+   drawZone->Refresh();
+ 
+-  SetFocus();
+ }
+ 
+ 
+-- 
+2.44.1
+

pkgs/paraver/dont-expand-colors.patch

@@ -11,7 +11,7 @@ diff --git a/api/semanticcolor.cpp b/api/semanticcolor.cpp
 index 9f86960..22859eb 100644
 --- a/api/semanticcolor.cpp
 +++ b/api/semanticcolor.cpp
-@@ -232,8 +232,9 @@ rgb CodeColor::getColor( PRV_UINT32 pos ) const
+@@ -295,8 +295,9 @@ rgb SemanticColor::getColor( PRV_UINT32 pos ) const
  {
    if( pos == 0 && ParaverConfig::getInstance()->getColorsTimelineUseZero() )
      return ParaverConfig::getInstance()->getColorsTimelineColorZero();
@@ -22,26 +22,26 @@ index 9f86960..22859eb 100644
 +  return colors[ pos + 1 ];
  }
  
- void CodeColor::setColor( PRV_UINT32 whichPos, rgb whichColor )
-@@ -250,6 +251,12 @@ void CodeColor::setColor( PRV_UINT32 whichPos, rgb whichColor )
+ void SemanticColor::setColor( PRV_UINT32 whichPos, rgb whichColor )
+@@ -314,6 +315,12 @@ void SemanticColor::setColor( PRV_UINT32 whichPos, rgb whichColor )
    colors[ whichPos ] = whichColor;
  }
  
-+void CodeColor::cutAfter( PRV_UINT32 pos )
++void SemanticColor::cutAfter( PRV_UINT32 pos )
 +{
 +  if ( pos < colors.size() )
 +    colors.erase( colors.begin() + pos, colors.end() );
 +}
 +
- void CodeColor::setCustomColor( TSemanticValue whichValue, rgb color ) 
+ void SemanticColor::setCustomColor( TSemanticValue whichValue, rgb color ) 
  {
    customPalette[ whichValue ] = color;
 diff --git a/api/semanticcolor.h b/api/semanticcolor.h
 index a079556..bddf3d8 100644
 --- a/api/semanticcolor.h
 +++ b/api/semanticcolor.h
-@@ -98,6 +98,7 @@ class CodeColor: public SemanticColor
- 
+@@ -114,6 +114,7 @@ class SemanticColor
+     // Code Color methods
      PRV_UINT32 getNumColors() const;
      void setColor( PRV_UINT32 pos, rgb color );
 +    void cutAfter( PRV_UINT32 pos );
@@ -61,7 +61,7 @@ index b0d2050..ee2ab69 100644
    for ( auto it : semanticColors )
    {
      std::tie( tmpColor.red, tmpColor.green, tmpColor.blue ) = it.second;
-     myCodeColor.setColor( it.first, tmpColor );
+     mySemanticColor.setColor( it.first, tmpColor );
 +	if (it.first > maxValue)
 +      maxValue = it.first;
    }
@@ -69,7 +69,7 @@ index b0d2050..ee2ab69 100644
 +  // Cut the palette after the highest defined value, so there are no
 +  // extra expanded values
 +  if ( !pcfParser.expandColors )
-+	myCodeColor.cutAfter(maxValue);
++	mySemanticColor.cutAfter(maxValue);
 +
    myEventLabels = EventLabels( pcfParser );
    myStateLabels = StateLabels( pcfParser );

pkgs/paraver/fix-boost-87.patch

@@ -0,0 +1,87 @@
+From 7ecd888e2ebb9e8c5582851d3c50bff61022708e Mon Sep 17 00:00:00 2001
+From: =?UTF-8?q?Joan=20Bruguera=20Mic=C3=B3?= <joanbrugueram@gmail.com>
+Date: Sat, 29 Mar 2025 18:14:25 +0000
+Subject: [PATCH] tutorialsdownload: Fix Boost ASIO 1.87.0 removals
+
+---
+ src/tutorialsdownload.cpp | 25 ++++++++++++-------------
+ 1 file changed, 12 insertions(+), 13 deletions(-)
+
+diff --git a/src/tutorialsdownload.cpp b/src/tutorialsdownload.cpp
+index a1921fd..6ce9dc2 100644
+--- a/src/tutorialsdownload.cpp
++++ b/src/tutorialsdownload.cpp
+@@ -121,13 +121,13 @@ void TutorialsProgress::updateInstall( int whichValue )
+ class client
+ {
+   public:
+-    client( boost::asio::io_service& io_service,
++    client( boost::asio::io_context& io_context,
+             boost::asio::ssl::context& context,
+             const std::string& server, const std::string& path,
+             ofstream& storeFile,
+             TutorialsProgress *progress )
+-            : resolver_( io_service ),
+-              socket_( io_service, context ),
++            : resolver_( io_context ),
++              socket_( io_context, context ),
+               store_( storeFile ),
+               progress_( progress )
+     {
+@@ -143,8 +143,7 @@ class client
+ 
+         // Start an asynchronous resolve to translate the server and service names
+         // into a list of endpoints.
+-        tcp::resolver::query query( server, "https" );
+-        resolver_.async_resolve( query,
++        resolver_.async_resolve( server, "https",
+                                  boost::bind( &client::handle_resolve,
+                                               this,
+                                               boost::asio::placeholders::error,
+@@ -154,7 +153,7 @@ class client
+   private:
+ 
+     void handle_resolve( const boost::system::error_code& err,
+-                         tcp::resolver::iterator endpoint_iterator )
++                         const tcp::resolver::results_type& endpoints )
+     {
+       if ( !err )
+       {
+@@ -162,7 +161,7 @@ class client
+         socket_.set_verify_callback( boost::bind( &client::verify_certificate, this, _1, _2 ) );
+ 
+         boost::asio::async_connect( socket_.lowest_layer(), 
+-                                    endpoint_iterator,
++                                    endpoints,
+                                     boost::bind( &client::handle_connect, 
+                                                  this,
+                                                  boost::asio::placeholders::error ) );
+@@ -536,9 +535,9 @@ bool TutorialsDownload::downloadTutorialsList() const
+     boost::asio::ssl::context ctx( boost::asio::ssl::context::sslv23 );
+     ctx.set_default_verify_paths();
+ 
+-    boost::asio::io_service io_service;
+-    client c( io_service, ctx, server, path, storeFile, nullptr );
+-    io_service.run();
++    boost::asio::io_context io_context;
++    client c( io_context, ctx, server, path, storeFile, nullptr );
++    io_context.run();
+ 
+     doneDownload = true;
+   }
+@@ -580,9 +579,9 @@ bool TutorialsDownload::download( const TutorialData& whichTutorial, string& tut
+     boost::asio::ssl::context ctx( boost::asio::ssl::context::sslv23 );
+     ctx.set_default_verify_paths();
+ 
+-    boost::asio::io_service io_service;
+-    client c( io_service, ctx, std::string( server.mb_str() ), std::string( path.mb_str() ), storeFile, &progress );
+-    io_service.run();
++    boost::asio::io_context io_context;
++    client c( io_context, ctx, std::string( server.mb_str() ), std::string( path.mb_str() ), storeFile, &progress );
++    io_context.run();
+   }
+   catch ( ParaverKernelException& e )
+   {
+-- 
+2.49.0
+

pkgs/paraver/fix-libxml2-deprecation.patch

@@ -0,0 +1,23 @@
+commit 60aa3ffa05f6b40db191a880e9e622d608744c1f
+Author: Aleix Boné <aleix.boneribo@bsc.es>
+Date:   Sun Jul 21 12:11:30 2025 +0200
+
+    fix libxml2 deprecated macro
+
+diff --git a/configure.ac b/configure.ac
+index 7fe1876..3ce1091 100644
+--- a/configure.ac
++++ b/configure.ac
+@@ -46,7 +46,10 @@ AC_PROG_CPP
+ AC_PROG_CXXCPP
+ AC_PROG_SED
+ 
+-AM_PATH_XML2
++PKG_PROG_PKG_CONFIG
++PKG_CHECK_MODULES([XML], [libxml-2.0])
++
++AC_SUBST(XML_CPPFLAGS, $XML_CFLAGS)
+ 
+ AX_BOOST_BASE(1.36)
+ AX_BOOST_SERIALIZATION
+

pkgs/paraver/kernel.nix

@@ -1,32 +1,36 @@
-{
-  stdenv
+{ stdenv
+, fetchFromGitHub
 , autoreconfHook
 , boost
 , libxml2
 , xml2
-, wxGTK32
 , autoconf
 , automake
 , pkg-config
 , zlib
+
+, enableDebug ? false
 }:
 
 let
-  wx = wxGTK32;
+  version = "4.12.0";
 in
-stdenv.mkDerivation rec {
+stdenv.mkDerivation {
   pname = "paraver-kernel";
-  version = "${src.shortRev}";
+  inherit version;
 
-  src = builtins.fetchGit {
-    url = "https://github.com/bsc-performance-tools/paraver-kernel.git";
-    rev = "2e167da3cee78ca11e31b74faefb23f12bac2b8c"; # master (missing tag)
-    ref = "master";
+  src = fetchFromGitHub {
+    owner = "bsc-performance-tools";
+    repo = "paraver-kernel";
+    rev = "v${version}";
+    sha256 = "sha256-Xs7g8ITZhPt00v7o2WlTddbou8C8Rc9kBMFpl2WsCS4=";
   };
 
   patches = [
     # https://github.com/bsc-performance-tools/paraver-kernel/pull/11
-    ./dont-expand-colors.patch
+    # TODO: add this back if it's still relevant
+    # ./dont-expand-colors.patch
+    ./fix-libxml2-deprecation.patch
   ];
 
   hardeningDisable = [ "all" ];
@@ -34,24 +38,31 @@ stdenv.mkDerivation rec {
 
   dontStrip = true;
 
-  preConfigure = ''
-    export CFLAGS="-O3 -DPARALLEL_ENABLED"
-    export CXXFLAGS="-O3 -DPARALLEL_ENABLED"
-  '';
+  env =
+    let
+      flags = "-DPARALLEL_ENABLED " + (if enableDebug then "-ggdb -Og" else "-O3");
+    in
+    {
+      CFLAGS = flags;
+      CXXFLAGS = flags;
+    };
 
   configureFlags = [
     "--with-boost=${boost}"
     "--enable-openmp"
   ];
 
-  buildInputs = [
+  nativeBuildInputs = [
     autoreconfHook
-    boost
-    libxml2.dev
-    xml2
     autoconf
     automake
     pkg-config
+  ];
+
+  buildInputs = [
+    boost
+    libxml2.dev
+    xml2
     zlib
   ];
 }

pkgs/paraver/release.nix

@@ -61,13 +61,16 @@ stdenv.mkDerivation rec {
     "--with-wx-config=${wx}/bin/wx-config"
   ];
 
+  nativeBuildInputs = [
+    autoconf
+    automake
+  ];
+
   buildInputs = [
     boost
     xml2
     libxml2.dev
     wx
-    autoconf
-    automake
     openssl.dev
   ];
 

pkgs/sonar/default.nix

@@ -18,8 +18,12 @@ stdenv.mkDerivation rec {
   hardeningDisable = [ "all" ];
   dontStrip = true;
   configureFlags = [ "--with-ovni=${ovni}" ];
-  buildInputs = [
+
+  nativeBuildInputs = [
     autoreconfHook
+  ];
+
+  buildInputs = [
     ovni
     mpi
   ];

pkgs/tacuda/default.nix

@@ -0,0 +1,68 @@
+{ stdenv
+, fetchFromGitHub
+, automake
+, autoconf
+, libtool
+, gnumake
+, autoreconfHook
+, boost
+, cudaPackages
+
+, useGit ? false
+, gitUrl ? "git@gitlab-internal.bsc.es:task-awareness/tacuda/tacuda.git"
+, gitBranch ? "main"
+, gitCommit ? "35234f9445e6149a2bd38d119841e2485d6ee05e"
+}:
+
+let
+
+  release_ver = "2.1.0";
+  release = {
+    version = release_ver;
+    src = fetchFromGitHub {
+      owner = "bsc-pm";
+      repo = "tacuda";
+      rev = release_ver;
+      hash = "sha256-Cj3EiLVJSLvRv0ydeg7Vp4SpkniEqHkcWF+YOJQ8EcM=";
+    };
+  };
+
+  git = rec {
+    version = src.shortRev;
+    src = builtins.fetchGit {
+      url = gitUrl;
+      ref = gitBranch;
+      rev = gitCommit;
+    };
+  };
+
+  source = if (useGit) then git else release;
+
+in
+
+stdenv.mkDerivation {
+  pname = "tacuda";
+  inherit (source) src version;
+
+  enableParallelBuilding = true;
+  separateDebugInfo = true;
+
+  nativeBuildInputs = [
+    autoreconfHook
+    automake
+    autoconf
+    libtool
+    gnumake
+  ];
+
+  patches = [ ./fix_config.patch ];
+
+  configureFlags = [ "--with-cuda-include=${cudaPackages.cudatoolkit}/include" ];
+
+  buildInputs = [
+    boost
+    cudaPackages.libcublas
+    cudaPackages.cuda_cudart
+  ];
+
+}

pkgs/tacuda/fix_config.patch

@@ -0,0 +1,13 @@
+diff --git a/m4/cuda.m4 b/m4/cuda.m4
+index 23f5c94..8f9b534 100644
+--- a/m4/cuda.m4
++++ b/m4/cuda.m4
+@@ -40,7 +40,7 @@ search_libs="cuda cublas cudart"
+ required_libs=""
+ 
+ m4_foreach([function],
+-           [cuInit,
++           [
+ 	    cublasSgemm,
+             cudaStreamCreate,
+             cudaLaunchKernel,

pkgs/tampi/default.nix

@@ -8,7 +8,6 @@
 , gnumake
 , boost
 , mpi
-, gcc
 , autoreconfHook
 , enableOvni ? true
 , ovni ? null
@@ -41,20 +40,23 @@ let
     };
   };
   source = if (useGit) then git else release;
-in stdenv.mkDerivation rec {
+in stdenv.mkDerivation {
   pname = "tampi";
   inherit (source) src version;
   enableParallelBuilding = true;
   separateDebugInfo = true;
-  buildInputs = [
-    autoreconfHook
-    automake
+
+  nativeBuildInputs = [
     autoconf
-    libtool
+    automake
+    autoreconfHook
     gnumake
+    libtool
+  ];
+
+  buildInputs = [
     boost
     mpi
-    gcc
   ] ++ optional (enableOvni) ovni;
   configureFlags = optional (enableOvni) "--with-ovni=${ovni}";
   dontDisableStatic = true;

pkgs/taopencl/default.nix

@@ -0,0 +1,46 @@
+{
+  stdenv
+, automake
+, autoconf
+, libtool
+, gnumake
+, boost
+, mpi
+, gcc
+, autoreconfHook
+, ocl-icd
+, opencl-headers
+}:
+
+stdenv.mkDerivation (finalAttrs: {
+  pname = "taopencl";
+  version = finalAttrs.src.shortRev;
+
+  src = builtins.fetchGit {
+    url = "git@gitlab-internal.bsc.es:task-awareness/taopencl/taopencl.git";
+    ref = "master";
+    rev = "c3b7b32ae8fa4af7ceff598532a881f8f1490aaf";
+  };
+
+  enableParallelBuilding = true;
+  separateDebugInfo = true;
+
+  configureFlags = [
+    "--with-opencl-lib=${ocl-icd}/lib"
+    "--with-opencl-include=${opencl-headers}/include"
+  ];
+
+  buildInputs = [
+    autoreconfHook
+    automake
+    autoconf
+    libtool
+    gnumake
+    boost
+    mpi
+    gcc
+  ];
+
+  dontDisableStatic = true;
+  hardeningDisable = [ "all" ];
+})