Fix GPI-2 and enable TAGASPI

The rdma-core driver.h include is no longer installed: 56dd87acd2 So ibv_read_sysfs_file() is not defined. As the symbols is still distributed, we simply add the missing prototype manually. Similarly, the gaspi_size_t gaspi_get_system_mem() function is not available from the gaspi public headers, so we define it in the max_mem.c test. Fixes: rarias/bscpkgs#7
2025-09-12 13:40:59 +02:00
19 changed files with 73 additions and 151 deletions
--- a/flake.nix
+++ b/flake.nix
@@ -2,25 +2,16 @@
  inputs.nixpkgs.url = "nixpkgs";

  outputs = { self, nixpkgs, ...}:
-    let
+  let
+    pkgs = import nixpkgs {
      # For now we only support x86
      system = "x86_64-linux";
-      pkgs = import nixpkgs {
-        inherit system;
-        overlays = [ self.overlays.default ];
-      };
-    in
+      overlays = [ self.overlays.default ];
+    };
+  in
    {
      bscOverlay = import ./overlay.nix;
      overlays.default = self.bscOverlay;
-      # full nixpkgs with our overlay applied
-      legacyPackages.${system} = pkgs;
-
-      hydraJobs = {
-        inherit (self.legacyPackages.${system}.bsc-ci) test pkgs cross;
-      };
-
-      # propagate nixpkgs lib, so we can do bscpkgs.lib
-      inherit (nixpkgs) lib;
+      legacyPackages.x86_64-linux = pkgs;
    };
 }
--- a/overlay.nix
+++ b/overlay.nix
@@ -88,21 +88,15 @@ in bscPkgs // {
      };
    };

-    pkgs = filterAttrs (_: isDerivation) bscPkgs;
-
-    pkgsList = final.runCommand "ci-pkgs" { }
+    pkgs = final.runCommand "ci-pkgs" { }
      "printf '%s\n' ${toString (collect isDerivation bscPkgs)} > $out";

    tests = final.runCommand "ci-tests" { }
      "printf '%s\n' ${toString (collect isDerivation final.bsc-ci.test)} > $out";

-    cross = prev.lib.genAttrs [ "riscv64" ] (target:
-      final.pkgsCross.${target}.bsc-ci.pkgs
-    );
-
    all = final.runCommand "ci-all" { }
    ''
-      deps="${toString [ final.bsc-ci.pkgsList final.bsc-ci.tests ]}"
+      deps="${toString [ final.bsc-ci.pkgs final.bsc-ci.tests ]}"
      cat $deps
      printf '%s\n' $deps > $out
    '';
--- a/pkgs/bench6/default.nix
+++ b/pkgs/bench6/default.nix
@@ -27,13 +27,10 @@ stdenv.mkDerivation rec {
    rev = gitCommit;
  };

-  nativeBuildInputs = [
-    cmake
-    clangOmpss2
-  ];
-
  buildInputs = [
    bigotes
+    cmake
+    clangOmpss2
    openmp
    openmpv
    nanos6
--- a/pkgs/bigotes/default.nix
+++ b/pkgs/bigotes/default.nix
@@ -4,7 +4,7 @@
 , cmake
 }:

-stdenv.mkDerivation {
+stdenv.mkDerivation rec {
  pname = "bigotes";
  version = "9dce13";
  src = fetchFromGitHub {
@@ -13,5 +13,5 @@ stdenv.mkDerivation {
    rev = "9dce13446a8da30bea552d569d260d54e0188518";
    sha256 = "sha256-ktxM3pXiL8YXSK+/IKWYadijhYXqGoLY6adLk36iigE=";
  };
-  nativeBuildInputs = [ cmake ];
+  buildInputs = [ cmake ];
 }
--- a/pkgs/extrae/default.nix
+++ b/pkgs/extrae/default.nix
@@ -20,7 +20,6 @@
 #, python3Packages
 , installShellFiles
 , symlinkJoin
-, enablePapi ? stdenv.hostPlatform == stdenv.buildPlatform # Disabled when cross-compiling
 }:

 let
@@ -88,7 +87,7 @@ stdenv.mkDerivation rec {
      --enable-sampling
      --with-unwind=${libunwind.dev}
      --with-xml-prefix=${libxml2.dev}
-      ${lib.optionalString enablePapi "--with-papi=${papi}"}
+      --with-papi=${papi}
      ${if (mpi != null) then ''--with-mpi=${mpi}''
        else ''--without-mpi''}
      --without-dyninst)
--- a/pkgs/intel-oneapi/2023.nix
+++ b/pkgs/intel-oneapi/2023.nix
@@ -78,7 +78,7 @@ let
  uncompressDebs = debs: name: stdenv.mkDerivation {
    name = name;
    srcs = debs;
-    nativeBuildInputs = [ dpkg ];
+    buildInputs = [ dpkg ];
    phases = [ "installPhase" ];
    installPhase = ''
      mkdir -p $out
@@ -108,17 +108,14 @@ let
      "intel-oneapi-mpi-${version}"
    ];

-    nativeBuildInputs = [
-      autoPatchelfHook
-      rsync
-    ];
-
    buildInputs = [
+      rsync
      libfabric
      zlib
      stdenv.cc.cc.lib
    ];

+    nativeBuildInputs = [ autoPatchelfHook ];
    phases = [ "installPhase" "fixupPhase" ];
    dontStrip = true;
    installPhase = ''
@@ -157,6 +154,7 @@ let

    buildInputs = [
      intel-mpi
+      rsync
      libffi_3_3
      libelf
      libxml2
@@ -164,10 +162,7 @@ let
      stdenv.cc.cc.lib
    ];

-    nativeBuildInputs = [
-      autoPatchelfHook
-      rsync
-    ];
+    nativeBuildInputs = [ autoPatchelfHook ];
    phases = [ "installPhase" "fixupPhase" ];
    dontStrip = true;

@@ -197,6 +192,7 @@ let
    buildInputs = [
      intel-mpi
      intel-tbb
+      rsync
      libffi_3_3
      libelf
      libxml2
@@ -205,10 +201,7 @@ let
      stdenv.cc.cc.lib
    ];

-    nativeBuildInputs = [
-      autoPatchelfHook
-      rsync
-    ];
+    nativeBuildInputs = [ autoPatchelfHook ];
    phases = [ "installPhase" "fixupPhase" ];
    dontStrip = true;

@@ -261,6 +254,7 @@ let
    buildInputs = [
      intel-mpi
      intel-compiler-shared
+      rsync
      libffi_3_3
      libelf
      libxml2
@@ -268,10 +262,7 @@ let
      stdenv.cc.cc.lib
    ];

-    nativeBuildInputs = [
-      autoPatchelfHook
-      rsync
-    ];
+    nativeBuildInputs = [ autoPatchelfHook ];

    phases = [ "installPhase" "fixupPhase" ];

@@ -346,6 +337,7 @@ let

    buildInputs = [
      intel-compiler-shared
+      rsync
      libffi_3_3
      libelf
      libxml2
@@ -353,10 +345,7 @@ let
      stdenv.cc.cc.lib
    ];

-    nativeBuildInputs = [
-      autoPatchelfHook
-      rsync
-    ];
+    nativeBuildInputs = [ autoPatchelfHook ];
    autoPatchelfIgnoreMissingDeps = [ "libtbb.so.12" "libtbbmalloc.so.2" "libze_loader.so.1" ];

    phases = [ "installPhase" "fixupPhase" ];
--- a/pkgs/llvm-ompss2/clang.nix
+++ b/pkgs/llvm-ompss2/clang.nix
@@ -43,36 +43,32 @@ let

  source = if (useGit) then git else release;

-in stdenv.mkDerivation {
+in stdenv.mkDerivation rec {
  pname = "clang-ompss2";
  inherit (source) src version;

  enableParallelBuilding = true;
+  isClang = true;

  passthru = {
    CC = "clang";
    CXX = "clang++";
-
-    isClang = true;
-    isClangWithOmpss = true;
-
-    inherit gcc zlib;
  };

-  nativeBuildInputs = [
-    bash
-    cmake
-    elfutils
-    llvmPackages_latest.lld
-    pkg-config
-    python3
-    perl
-    which
-    zlib
-  ];
+  isClangWithOmpss = true;
+
+  nativeBuildInputs = [ zlib ];

  buildInputs = [
+    which
+    bash
+    python3
+    perl
+    cmake
+    llvmPackages_latest.lld
+    elfutils
    libffi
+    pkg-config
    zlib
    gcc.cc.lib # Required for libstdc++.so.6
  ];
--- a/pkgs/lmbench/default.nix
+++ b/pkgs/lmbench/default.nix
@@ -22,11 +22,7 @@ stdenv.mkDerivation rec {
  '';

  buildInputs = [ libtirpc ];
-  patches = [
-    ./fix-install.patch
-    ./gcc-14.patch
-    ./fix-cross.patch
-  ];
+  patches = [ ./fix-install.patch ./gcc-14.patch ];

  hardeningDisable = [ "all" ];

@@ -39,8 +35,6 @@ stdenv.mkDerivation rec {
      CFLAGS=-Wno-implicit-int
      CPPFLAGS=-I${libtirpc.dev}/include/tirpc
      LDFLAGS=-ltirpc
-      CC=${stdenv.cc.targetPrefix}cc
-      AR=${stdenv.cc.targetPrefix}ar
    )
  '';

--- a/pkgs/lmbench/fix-cross.patch
+++ b/pkgs/lmbench/fix-cross.patch
@@ -1,13 +0,0 @@
-diff --git a/src/Makefile b/src/Makefile
-index 2555014..356eeb3 100644
--- a/src/Makefile
-+++ b/src/Makefile
-@@ -36,7 +36,7 @@ SHELL=/bin/sh
- 
- CC=`../scripts/compiler`
- MAKE=`../scripts/make`
-AR=ar
-+AR?=ar
- ARCREATE=cr
- 
- # base of installation location
--- a/pkgs/mcxx/default.nix
+++ b/pkgs/mcxx/default.nix
@@ -32,20 +32,17 @@ stdenv.mkDerivation rec {

  enableParallelBuilding = true;

-  nativeBuildInputs = [
+  buildInputs = [
    autoreconfHook
-    bison
-    flex
+    nanos6
+    gperf
    python3
    gfortran
    pkg-config
-    gperf
-    gcc
-  ];
-
-  buildInputs = [
-    nanos6
    sqlite.dev
+    bison
+    flex
+    gcc
  ];

  patches = [ ./intel.patch ];
--- a/pkgs/nanos6/default.nix
+++ b/pkgs/nanos6/default.nix
@@ -16,7 +16,6 @@
 , jemallocNanos6 ? null
 , cachelineBytes ? 64
 , enableGlibcxxDebug ? false
-, enablePapi ? stdenv.hostPlatform == stdenv.buildPlatform # Disabled when cross-compiling
 , useGit ? false
 , gitUrl ? "ssh://git@bscpm04.bsc.es/nanos6/nanos6"
 , gitBranch ? "master"
@@ -48,8 +47,6 @@ let
  };

  source = if (useGit) then git else release;
-
-  isCross = stdenv.hostPlatform != stdenv.buildPlatform;
 in
  stdenv.mkDerivation (source // {
    pname = "nanos6";
@@ -74,11 +71,9 @@ in
      "--disable-all-instrumentations"
      "--enable-ovni-instrumentation"
      "--with-ovni=${ovni}"
-      "--with-boost=${boost.dev}"
    ] ++
      (optional enableJemalloc "--with-jemalloc=${jemallocNanos6}") ++
-      (optional enableGlibcxxDebug "CXXFLAGS=-D_GLIBCXX_DEBUG") ++
-      (optional isCross "--with-symbol-resolution=ifunc");
+      (optional enableGlibcxxDebug "CXXFLAGS=-D_GLIBCXX_DEBUG");

    postConfigure = lib.optionalString (!enableDebug) ''
      # Disable debug
@@ -93,29 +88,23 @@ in
    dontStrip = enableDebug;
    separateDebugInfo = true;

-    nativeBuildInputs = [
+    buildInputs = [
      autoconf
      automake
      libtool
      pkg-config
-
-      # TODO: papi_version is needed for configure:
-      # ./configure: line 27378: papi_version: command not found
-      # This probably breaks cross-compilation
-    ] ++ lib.optionals enablePapi [ papi ];
-
-    buildInputs = [
      boost
      numactl
      hwloc
+      papi
      ovni
-    ] ++ lib.optionals enablePapi [ papi ];
+    ];

    # Create a script that sets NANOS6_HOME
    postInstall = ''
      mkdir -p $out/nix-support
      echo "export NANOS6_HOME=$out" >> $out/nix-support/setup-hook
-    '';
+    ''; 

    meta = with lib; {
      homepage = "https://github.com/bsc-pm/nanos6";
--- a/pkgs/nosv/default.nix
+++ b/pkgs/nosv/default.nix
@@ -7,7 +7,7 @@
 , numactl
 , hwloc
 , papi
-, enablePapi ? stdenv.hostPlatform == stdenv.buildPlatform # Disabled when cross-compiling
+, enablePapi ? true
 , cacheline ? 64 # bits
 , ovni ? null
 , useGit ? false
--- a/pkgs/osu/default.nix
+++ b/pkgs/osu/default.nix
@@ -24,10 +24,9 @@ stdenv.mkDerivation rec {

  doCheck = true;
  enableParallelBuilding = true;
-  nativeBuildInputs = [ mpiAll ];
  buildInputs = [ mpiAll ];
  hardeningDisable = [ "all" ];
-  configureFlags = [
+  configureFlags = [ 
      "CC=mpicc"
      "CXX=mpicxx"
  ];
@@ -41,7 +40,7 @@ stdenv.mkDerivation rec {

  meta = {
    description = "OSU Micro-Benchmarks";
-    homepage = "http://mvapich.cse.ohio-state.edu/benchmarks/";
+    homepage = http://mvapich.cse.ohio-state.edu/benchmarks/;
    maintainers = [ ];
    platforms = lib.platforms.all;
  };
--- a/pkgs/ovni/default.nix
+++ b/pkgs/ovni/default.nix
@@ -13,6 +13,8 @@
 , useMpi ? (stdenv.buildPlatform.canExecute stdenv.hostPlatform)
 }:

+with lib;
+
 let
  release = rec {
    version = "1.12.0";
@@ -43,7 +45,7 @@ in
    postPatch = ''
      patchShebangs --build test/
    '';
-    nativeBuildInputs = [ cmake ] ++ lib.optionals (useMpi) [ mpi ];
+    nativeBuildInputs = [ cmake ];
    buildInputs = lib.optionals (useMpi) [ mpi ];
    cmakeBuildType = if (enableDebug) then "Debug" else "Release";
    cmakeFlags = [
--- a/pkgs/paraver/default.nix
+++ b/pkgs/paraver/default.nix
@@ -60,17 +60,17 @@ stdenv.mkDerivation rec {
  ];

  nativeBuildInputs = [
-    autoconf
-    automake
-    autoreconfHook
    wrapGAppsHook
  ];

  buildInputs = [
+    autoreconfHook
    boost
    libxml2.dev
    xml2
    wx
+    autoconf
+    automake
    paraverKernel
    openssl.dev
  ];
--- a/pkgs/paraver/kernel.nix
+++ b/pkgs/paraver/kernel.nix
@@ -44,17 +44,14 @@ stdenv.mkDerivation rec {
    "--enable-openmp"
  ];

-  nativeBuildInputs = [
-    autoreconfHook
-    autoconf
-    automake
-    pkg-config
-  ];
-
  buildInputs = [
+    autoreconfHook
    boost
    libxml2.dev
    xml2
+    autoconf
+    automake
+    pkg-config
    zlib
  ];
 }
--- a/pkgs/paraver/release.nix
+++ b/pkgs/paraver/release.nix
@@ -61,16 +61,13 @@ stdenv.mkDerivation rec {
    "--with-wx-config=${wx}/bin/wx-config"
  ];

-  nativeBuildInputs = [
-    autoconf
-    automake
-  ];
-
  buildInputs = [
    boost
    xml2
    libxml2.dev
    wx
+    autoconf
+    automake
    openssl.dev
  ];

--- a/pkgs/sonar/default.nix
+++ b/pkgs/sonar/default.nix
@@ -18,12 +18,8 @@ stdenv.mkDerivation rec {
  hardeningDisable = [ "all" ];
  dontStrip = true;
  configureFlags = [ "--with-ovni=${ovni}" ];
-
-  nativeBuildInputs = [
-    autoreconfHook
-  ];
-
  buildInputs = [
+    autoreconfHook
    ovni
    mpi
  ];
--- a/pkgs/tampi/default.nix
+++ b/pkgs/tampi/default.nix
@@ -8,6 +8,7 @@
 , gnumake
 , boost
 , mpi
+, gcc
 , autoreconfHook
 , enableOvni ? true
 , ovni ? null
@@ -40,23 +41,20 @@ let
    };
  };
  source = if (useGit) then git else release;
-in stdenv.mkDerivation {
+in stdenv.mkDerivation rec {
  pname = "tampi";
  inherit (source) src version;
  enableParallelBuilding = true;
  separateDebugInfo = true;
-
-  nativeBuildInputs = [
-    autoconf
-    automake
-    autoreconfHook
-    gnumake
-    libtool
-  ];
-
  buildInputs = [
+    autoreconfHook
+    automake
+    autoconf
+    libtool
+    gnumake
    boost
    mpi
+    gcc
  ] ++ optional (enableOvni) ovni;
  configureFlags = optional (enableOvni) "--with-ovni=${ovni}";
  dontDisableStatic = true;