Fetch website from its own git repository

Reviewed-by: Aleix Boné <abonerib@bsc.es>

.gitea/workflows/ci.yaml

@@ -1,20 +0,0 @@
-name: CI
-on:
-  push:
-    branches:
-      - master
-  pull_request:
-    branches:
-      - master
-
-jobs:
-  build:all:
-    runs-on: native
-    steps:
-      - uses: https://gitea.com/ScMi1/checkout@v1.4
-      - run: nix build -L --no-link --print-out-paths .#bsc.ci.all
-  build:cross:
-    runs-on: native
-    steps:
-      - uses: https://gitea.com/ScMi1/checkout@v1.4
-      - run: nix build -L --no-link --print-out-paths .#bsc.ci.cross

.gitignore

@@ -1,3 +1,3 @@
-**.swp
+*.swp
 /result
 /misc

.gitlab-ci.yml

@@ -1,6 +0,0 @@
-build:bsc-ci.all:
-  stage: build
-  tags:
-    - nix
-  script:
-    - nix build -L --no-link --print-out-paths .#bsc-ci.all

COPYING

@@ -1,21 +0,0 @@
-Copyright (c) 2020-2025 Barcelona Supercomputing Center
-Copyright (c) 2003-2020 Eelco Dolstra and the Nixpkgs/NixOS contributors
-
-Permission is hereby granted, free of charge, to any person obtaining
-a copy of this software and associated documentation files (the
-"Software"), to deal in the Software without restriction, including
-without limitation the rights to use, copy, modify, merge, publish,
-distribute, sublicense, and/or sell copies of the Software, and to
-permit persons to whom the Software is furnished to do so, subject to
-the following conditions:
-
-The above copyright notice and this permission notice shall be
-included in all copies or substantial portions of the Software.
-
-THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
-EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
-MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
-NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE
-LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION
-OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION
-WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.

README.md

@@ -1,9 +0,0 @@
-# Jungle
-
-This repository provides two components that can be used independently:
-
-- A Nix overlay with packages used at BSC (formerly known as bscpkgs). Access
-  them directly with `nix shell .#<pkgname>`.
-
-- NixOS configurations for jungle machines. Use `nixos-rebuild switch --flake .`
-  to upgrade the current machine.

default.nix

@@ -1,19 +0,0 @@
-let
-  bscOverlay = import ./overlay.nix;
-
-  # read flake.lock and determine revision from there
-  lock = builtins.fromJSON (builtins.readFile ./flake.lock);
-  inherit (lock.nodes.nixpkgs.locked) rev narHash;
-  fetchedNixpkgs = builtins.fetchTarball {
-    url = "https://github.com/NixOS/nixpkgs/archive/${rev}.tar.gz";
-    sha256 = narHash;
-  };
-in
-{ overlays ? [ ]
-, nixpkgs ? fetchedNixpkgs
-, ...
-}@attrs:
-import nixpkgs (
-  (builtins.removeAttrs attrs [ "overlays" "nixpkgs" ]) //
-  { overlays = [ bscOverlay ] ++ overlays; }
-)

doc/maintainers.md

@@ -1,30 +0,0 @@
-# Maintainers
-
-## Role of a maintainer
-The responsibilities of maintainers are quite lax, and similar in spirit to
-[nixpkgs' maintainers][1]:
-
-    The main responsibility of a maintainer is to keep the packages they
-    maintain in a functioning state, and keep up with updates. In order to do
-    that, they are empowered to make decisions over the packages they maintain.
-
-    That being said, the maintainer is not alone in proposing changes to the
-    packages. Anybody (both bots and humans) can send PRs to bump or tweak the
-    package.
-
-In practice, this means that when updating or proposing changes to a package,
-we will notify maintainers by mentioning them in Gitea so they can test changes
-and give feedback.
-
-Since we do bi-yearly release cycles, there is no expectation from maintainers
-to update packages at each upstream release. Nevertheless, on each release cycle
-we may request help from maintainers when updating or testing their packages.
-
-## Becoming a maintainer
-
-
-You'll have to add yourself in the `maintainers.nix` list; your username should
-match your `bsc.es` email. Then you can add yourself to the `meta.maintainers`
-of any package you are interested in maintaining.
-
-[1]: [https://github.com/NixOS/nixpkgs/tree/nixos-25.05/maintainers]

flake.lock

@@ -1,5 +1,91 @@
 {
   "nodes": {
+    "agenix": {
+      "inputs": {
+        "darwin": "darwin",
+        "home-manager": "home-manager",
+        "nixpkgs": [
+          "nixpkgs"
+        ],
+        "systems": "systems"
+      },
+      "locked": {
+        "lastModified": 1750173260,
+        "narHash": "sha256-9P1FziAwl5+3edkfFcr5HeGtQUtrSdk/MksX39GieoA=",
+        "owner": "ryantm",
+        "repo": "agenix",
+        "rev": "531beac616433bac6f9e2a19feb8e99a22a66baf",
+        "type": "github"
+      },
+      "original": {
+        "owner": "ryantm",
+        "repo": "agenix",
+        "type": "github"
+      }
+    },
+    "bscpkgs": {
+      "inputs": {
+        "nixpkgs": [
+          "nixpkgs"
+        ]
+      },
+      "locked": {
+        "lastModified": 1749650500,
+        "narHash": "sha256-2MHfVPV6RA7qPSCtXh4+KK0F0UjN+J4z8//+n6NK7Xs=",
+        "ref": "refs/heads/master",
+        "rev": "9d1944c658929b6f98b3f3803fead4d1b91c4405",
+        "revCount": 961,
+        "type": "git",
+        "url": "https://git.sr.ht/~rodarima/bscpkgs"
+      },
+      "original": {
+        "type": "git",
+        "url": "https://git.sr.ht/~rodarima/bscpkgs"
+      }
+    },
+    "darwin": {
+      "inputs": {
+        "nixpkgs": [
+          "agenix",
+          "nixpkgs"
+        ]
+      },
+      "locked": {
+        "lastModified": 1744478979,
+        "narHash": "sha256-dyN+teG9G82G+m+PX/aSAagkC+vUv0SgUw3XkPhQodQ=",
+        "owner": "lnl7",
+        "repo": "nix-darwin",
+        "rev": "43975d782b418ebf4969e9ccba82466728c2851b",
+        "type": "github"
+      },
+      "original": {
+        "owner": "lnl7",
+        "ref": "master",
+        "repo": "nix-darwin",
+        "type": "github"
+      }
+    },
+    "home-manager": {
+      "inputs": {
+        "nixpkgs": [
+          "agenix",
+          "nixpkgs"
+        ]
+      },
+      "locked": {
+        "lastModified": 1745494811,
+        "narHash": "sha256-YZCh2o9Ua1n9uCvrvi5pRxtuVNml8X2a03qIFfRKpFs=",
+        "owner": "nix-community",
+        "repo": "home-manager",
+        "rev": "abfad3d2958c9e6300a883bd443512c55dfeb1be",
+        "type": "github"
+      },
+      "original": {
+        "owner": "nix-community",
+        "repo": "home-manager",
+        "type": "github"
+      }
+    },
     "nixpkgs": {
       "locked": {
         "lastModified": 1752436162,
@@ -18,8 +104,25 @@
     },
     "root": {
       "inputs": {
+        "agenix": "agenix",
+        "bscpkgs": "bscpkgs",
         "nixpkgs": "nixpkgs"
       }
+    },
+    "systems": {
+      "locked": {
+        "lastModified": 1681028828,
+        "narHash": "sha256-Vy1rq5AaRuLzOxct8nz4T6wlgyUR7zLU309k9mBC768=",
+        "owner": "nix-systems",
+        "repo": "default",
+        "rev": "da67096a3b9bf56a91d16901293e51ba5b49a27e",
+        "type": "github"
+      },
+      "original": {
+        "owner": "nix-systems",
+        "repo": "default",
+        "type": "github"
+      }
     }
   },
   "root": "root",

flake.nix

@@ -1,22 +1,19 @@
 {
   inputs = {
     nixpkgs.url = "github:NixOS/nixpkgs/nixos-25.05";
+    agenix.url = "github:ryantm/agenix";
+    agenix.inputs.nixpkgs.follows = "nixpkgs";
+    bscpkgs.url = "git+https://git.sr.ht/~rodarima/bscpkgs";
+    bscpkgs.inputs.nixpkgs.follows = "nixpkgs";
   };
 
-  outputs = { self, nixpkgs, ... }:
+  outputs = { self, nixpkgs, agenix, bscpkgs, ... }:
 let
   mkConf = name: nixpkgs.lib.nixosSystem {
     system = "x86_64-linux";
-    specialArgs = { inherit nixpkgs; theFlake = self; };
+    specialArgs = { inherit nixpkgs bscpkgs agenix; theFlake = self; };
     modules = [ "${self.outPath}/m/${name}/configuration.nix" ];
   };
-  # For now we only support x86
-  system = "x86_64-linux";
-  pkgs = import nixpkgs {
-    inherit system;
-    overlays = [ self.overlays.default ];
-    config.allowUnfree = true;
-  };
 in
   {
     nixosConfigurations = {
@@ -34,19 +31,9 @@ in
       weasel  = mkConf "weasel";
     };
 
-    bscOverlay = import ./overlay.nix;
-    overlays.default = self.bscOverlay;
-
-    # full nixpkgs with our overlay applied
-    legacyPackages.${system} = pkgs;
-
-    hydraJobs = self.legacyPackages.${system}.bsc.hydraJobs;
-
-    # propagate nixpkgs lib, so we can do bscpkgs.lib
-    lib = nixpkgs.lib // {
-      maintainers = nixpkgs.lib.maintainers // {
-        bsc = import ./pkgs/maintainers.nix;
-      };
+    packages.x86_64-linux = self.nixosConfigurations.hut.pkgs // {
+      bscpkgs = bscpkgs.packages.x86_64-linux;
+      nixpkgs = nixpkgs.legacyPackages.x86_64-linux;
     };
   };
 }

m/common/base.nix

@@ -11,7 +11,6 @@
     ./base/hw.nix
     ./base/net.nix
     ./base/nix.nix
-    ./base/sys-devices.nix
     ./base/ntp.nix
     ./base/rev.nix
     ./base/ssh.nix

m/common/base/agenix.nix

@@ -1,8 +1,9 @@
-{ pkgs, ... }:
+{ agenix, ... }:
 
 {
-  imports = [ ../../module/agenix.nix ];
+  imports = [ agenix.nixosModules.default ];
 
-  # Add agenix to system packages
-  environment.systemPackages = [ pkgs.agenix ];
+  environment.systemPackages = [
+    agenix.packages.x86_64-linux.default
+  ];
 }

m/common/base/env.nix

@@ -5,8 +5,8 @@
     vim wget git htop tmux pciutils tcpdump ripgrep nix-index nixos-option
     nix-diff ipmitool freeipmi ethtool lm_sensors cmake gnumake file tree
     ncdu config.boot.kernelPackages.perf ldns pv
-    # From jungle overlay
-    osumb nixgen
+    # From bsckgs overlay
+    osumb
   ];
 
   programs.direnv.enable = true;

m/common/base/nix.nix

@@ -1,8 +1,9 @@
-{ pkgs, nixpkgs, theFlake,  ... }:
+{ pkgs, nixpkgs, bscpkgs, theFlake,  ... }:
 
 {
   nixpkgs.overlays = [
-    (import ../../../overlay.nix)
+    bscpkgs.bscOverlay
+    (import ../../../pkgs/overlay.nix)
   ];
 
   nixpkgs.config.allowUnfree = true;

m/common/base/sys-devices.nix

@@ -1,9 +0,0 @@
-{
-  nix.settings.system-features = [ "sys-devices" ];
-
-  programs.nix-required-mounts.enable = true;
-  programs.nix-required-mounts.allowedPatterns.sys-devices.paths = [
-    "/sys/devices/system/cpu"
-    "/sys/devices/system/node"
-  ];
-}

m/common/base/users.nix

@@ -180,19 +180,6 @@
           "ssh-ed25519 AAAAC3NzaC1lZDI1NTE5AAAAIFmMqKqPg4uocNOr3O41kLbZMOMJn3m2ZdN1JvTR96z3 bsccns@arnau-bsc"
         ];
       };
-
-      aaguirre = {
-        uid = 9655;
-        isNormalUser = true;
-        home = "/home/Computational/aaguirre";
-        description = "Alejandro Aguirre";
-        group = "Computational";
-        hosts = [ "apex" "hut" ];
-        hashedPassword = "$6$TXRXQT6jjBvxkxU6$E.sh5KspAm1qeG5Ct7OPHpo8REmbGDwjFGvqeGgTVz3GASGOAnPL7UMZsMAsAKBoahOw.v8LNno6XGrTEPzZH1";
-        openssh.authorizedKeys.keys = [
-          "ssh-ed25519 AAAAC3NzaC1lZDI1NTE5AAAAIOlRX7ZCnqtUJYCxKgWmgSrFCYuA2LHY96rVwqxXPl86 aaguirre@BSC-8488184117"
-        ];
-      };
     };
 
     groups = {

m/fox/configuration.nix

@@ -93,4 +93,20 @@
     wantedBy = [ "multi-user.target" ];
     serviceConfig.ExecStart = script;
   };
+
+  # Only allow SSH connections from users who have a SLURM allocation
+  # See: https://slurm.schedmd.com/pam_slurm_adopt.html
+  security.pam.services.sshd.rules.account.slurm = {
+    control = "required";
+    enable = true;
+    modulePath = "${pkgs.slurm}/lib/security/pam_slurm_adopt.so";
+    args = [ "log_level=debug5" ];
+    order = 999999; # Make it last one
+  };
+
+  # Disable systemd session (pam_systemd.so) as it will conflict with the
+  # pam_slurm_adopt.so module. What happens is that the shell is first adopted
+  # into the slurmstepd task and then into the systemd session, which is not
+  # what we want, otherwise it will linger even if all jobs are gone.
+  security.pam.services.sshd.startSession = lib.mkForce false;
 }

m/fox/wireguard.nix

@@ -23,11 +23,11 @@
 
       peers = [
         # List of allowed peers.
-        {
+        { 
           name = "apex";
           publicKey = "VwhcN8vSOzdJEotQTpmPHBC52x3Hbv1lkFIyKubrnUA=";
           # List of IPs assigned to this peer within the tunnel subnet. Used to configure routing.
-          allowedIPs = [ "10.106.0.30/32" "10.0.40.7/32" ];
+          allowedIPs = [ "10.106.0.30/32" ];
         }
         {
           name = "raccoon";
@@ -40,7 +40,6 @@
 
   networking.hosts = {
     "10.106.0.30" = [ "apex" ];
-    "10.0.40.7" = [ "hut" ];
     "10.106.0.236" = [ "raccoon" ];
     "10.0.44.4" = [ "tent" ];
   };

m/hut/configuration.nix

@@ -17,7 +17,6 @@
     ./postgresql.nix
     ./nginx.nix
     ./p.nix
-    ./ompss2-timer.nix
     #./pxe.nix
   ];
 

m/hut/gitea.nix

@@ -29,9 +29,6 @@
     };
   };
 
-  # Allow gitea user to send mail
-  users.users.gitea.extraGroups = [ "mail-robot" ];
-
   services.gitea-actions-runner.instances = {
     runrun = {
       enable = true;

m/hut/msmtp.nix

@@ -1,11 +1,8 @@
 { config, lib, ... }:
 {
-  # Robot user that can see the password to send mail from jungle-robot
-  users.groups.mail-robot = {};
-
   age.secrets.jungleRobotPassword = {
     file = ../../secrets/jungle-robot-password.age;
-    group = "mail-robot";
+    group = "gitea";
     mode = "440";
   };
 

m/hut/nginx.nix

@@ -4,8 +4,8 @@ let
     name = "jungle-web";
     src = pkgs.fetchgit {
       url = "https://jungle.bsc.es/git/rarias/jungle-website.git";
-      rev = "52abaf4d71652a9ef77a0b098db14ca33bffff4c";
-      hash = "sha256-/ul9GazbOrOkmlvSgDz/+2W+V+ir5725Y7mVLc3rb0M=";
+      rev = "739bf0175a7f05380fe7ad7023ff1d60db1710e1";
+      hash = "sha256-ea5DzhYTzZ9TmqD+x95rdNdLbxPnBluqlYH2NmBYmc4=";
     };
     buildInputs = [ pkgs.hugo ];
     buildPhase = ''

m/hut/ompss2-timer.nix

@@ -1,85 +0,0 @@
-{ config, pkgs, ... }:
-{
-  systemd.timers = {
-    "ompss2-closing" = {
-      wantedBy = [ "timers.target" ];
-      timerConfig = {
-        Unit = "ompss2-closing.service";
-        OnCalendar = [ "*-03-15 07:00:00" "*-09-15 07:00:00"];
-      };
-    };
-    "ompss2-freeze" = {
-      wantedBy = [ "timers.target" ];
-      timerConfig = {
-        Unit = "ompss2-freeze.service";
-        OnCalendar = [ "*-04-15 07:00:00" "*-10-15 07:00:00" ];
-      };
-    };
-    "ompss2-release" = {
-      wantedBy = [ "timers.target" ];
-      timerConfig = {
-        Unit = "ompss2-release.service";
-        OnCalendar = [ "*-05-15 07:00:00" "*-11-15 07:00:00" ];
-      };
-    };
-  };
-
-  systemd.services =
-  let
-    closing = pkgs.writeText "closing.txt"
-    ''
-      Subject: OmpSs-2 release enters closing period
-
-      Hi,
-
-      You have one month to merge the remaining features for the next OmpSs-2
-      release. Please, identify what needs to be merged and discuss it in the next
-      OmpSs-2 meeting.
-
-      Thanks!,
-      Jungle robot
-    '';
-    freeze = pkgs.writeText "freeze.txt"
-    ''
-      Subject: OmpSs-2 release enters freeze period
-
-      Hi,
-
-      The period to introduce new features or breaking changes is over, only bug
-      fixes are allowed now. During this time, please prepare the release notes
-      to be included in the next OmpSs-2 release.
-
-      Thanks!,
-      Jungle robot
-    '';
-    release = pkgs.writeText "release.txt"
-    ''
-      Subject: OmpSs-2 release now
-
-      Hi,
-
-      The period to introduce bug fixes is now over. Please, proceed to do the
-      OmpSs-2 release.
-
-      Thanks!,
-      Jungle robot
-    '';
-    mkServ = name: mail: {
-      "ompss2-${name}" = {
-        script = ''
-          set -eu
-          set -o pipefail
-          cat ${mail} | ${config.security.wrapperDir}/sendmail star@bsc.es
-        '';
-        serviceConfig = {
-          Type = "oneshot";
-          DynamicUser = true;
-          Group = "mail-robot";
-        };
-      };
-    };
-  in
-    (mkServ "closing" closing) //
-    (mkServ "freeze" freeze) //
-    (mkServ "release" release);
-}

m/module/agenix.nix

@@ -1,357 +0,0 @@
-{
-  config,
-  options,
-  lib,
-  pkgs,
-  ...
-}:
-with lib;
-let
-  cfg = config.age;
-
-  isDarwin = lib.attrsets.hasAttrByPath [ "environment" "darwinConfig" ] options;
-
-  ageBin = config.age.ageBin;
-
-  users = config.users.users;
-
-  sysusersEnabled =
-    if isDarwin then
-      false
-    else
-      options.systemd ? sysusers && (config.systemd.sysusers.enable || config.services.userborn.enable);
-
-  mountCommand =
-    if isDarwin then
-      ''
-        if ! diskutil info "${cfg.secretsMountPoint}" &> /dev/null; then
-            num_sectors=1048576
-            dev=$(hdiutil attach -nomount ram://"$num_sectors" | sed 's/[[:space:]]*$//')
-            newfs_hfs -v agenix "$dev"
-            mount -t hfs -o nobrowse,nodev,nosuid,-m=0751 "$dev" "${cfg.secretsMountPoint}"
-        fi
-      ''
-    else
-      ''
-        grep -q "${cfg.secretsMountPoint} ramfs" /proc/mounts ||
-          mount -t ramfs none "${cfg.secretsMountPoint}" -o nodev,nosuid,mode=0751
-      '';
-  newGeneration = ''
-    _agenix_generation="$(basename "$(readlink ${cfg.secretsDir})" || echo 0)"
-    (( ++_agenix_generation ))
-    echo "[agenix] creating new generation in ${cfg.secretsMountPoint}/$_agenix_generation"
-    mkdir -p "${cfg.secretsMountPoint}"
-    chmod 0751 "${cfg.secretsMountPoint}"
-    ${mountCommand}
-    mkdir -p "${cfg.secretsMountPoint}/$_agenix_generation"
-    chmod 0751 "${cfg.secretsMountPoint}/$_agenix_generation"
-  '';
-
-  chownGroup = if isDarwin then "admin" else "keys";
-  # chown the secrets mountpoint and the current generation to the keys group
-  # instead of leaving it root:root.
-  chownMountPoint = ''
-    chown :${chownGroup} "${cfg.secretsMountPoint}" "${cfg.secretsMountPoint}/$_agenix_generation"
-  '';
-
-  setTruePath = secretType: ''
-    ${
-      if secretType.symlink then
-        ''
-          _truePath="${cfg.secretsMountPoint}/$_agenix_generation/${secretType.name}"
-        ''
-      else
-        ''
-          _truePath="${secretType.path}"
-        ''
-    }
-  '';
-
-  installSecret = secretType: ''
-    ${setTruePath secretType}
-    echo "decrypting '${secretType.file}' to '$_truePath'..."
-    TMP_FILE="$_truePath.tmp"
-
-    IDENTITIES=()
-    for identity in ${toString cfg.identityPaths}; do
-      test -r "$identity" || continue
-      test -s "$identity" || continue
-      IDENTITIES+=(-i)
-      IDENTITIES+=("$identity")
-    done
-
-    test "''${#IDENTITIES[@]}" -eq 0 && echo "[agenix] WARNING: no readable identities found!"
-
-    mkdir -p "$(dirname "$_truePath")"
-    [ "${secretType.path}" != "${cfg.secretsDir}/${secretType.name}" ] && mkdir -p "$(dirname "${secretType.path}")"
-    (
-      umask u=r,g=,o=
-      test -f "${secretType.file}" || echo '[agenix] WARNING: encrypted file ${secretType.file} does not exist!'
-      test -d "$(dirname "$TMP_FILE")" || echo "[agenix] WARNING: $(dirname "$TMP_FILE") does not exist!"
-      LANG=${
-        config.i18n.defaultLocale or "C"
-      } ${ageBin} --decrypt "''${IDENTITIES[@]}" -o "$TMP_FILE" "${secretType.file}"
-    )
-    chmod ${secretType.mode} "$TMP_FILE"
-    mv -f "$TMP_FILE" "$_truePath"
-
-    ${optionalString secretType.symlink ''
-      [ "${secretType.path}" != "${cfg.secretsDir}/${secretType.name}" ] && ln -sfT "${cfg.secretsDir}/${secretType.name}" "${secretType.path}"
-    ''}
-  '';
-
-  testIdentities = map (path: ''
-    test -f ${path} || echo '[agenix] WARNING: config.age.identityPaths entry ${path} not present!'
-  '') cfg.identityPaths;
-
-  cleanupAndLink = ''
-    _agenix_generation="$(basename "$(readlink ${cfg.secretsDir})" || echo 0)"
-    (( ++_agenix_generation ))
-    echo "[agenix] symlinking new secrets to ${cfg.secretsDir} (generation $_agenix_generation)..."
-    ln -sfT "${cfg.secretsMountPoint}/$_agenix_generation" ${cfg.secretsDir}
-
-    (( _agenix_generation > 1 )) && {
-    echo "[agenix] removing old secrets (generation $(( _agenix_generation - 1 )))..."
-    rm -rf "${cfg.secretsMountPoint}/$(( _agenix_generation - 1 ))"
-    }
-  '';
-
-  installSecrets = builtins.concatStringsSep "\n" (
-    [ "echo '[agenix] decrypting secrets...'" ]
-    ++ testIdentities
-    ++ (map installSecret (builtins.attrValues cfg.secrets))
-    ++ [ cleanupAndLink ]
-  );
-
-  chownSecret = secretType: ''
-    ${setTruePath secretType}
-    chown ${secretType.owner}:${secretType.group} "$_truePath"
-  '';
-
-  chownSecrets = builtins.concatStringsSep "\n" (
-    [ "echo '[agenix] chowning...'" ]
-    ++ [ chownMountPoint ]
-    ++ (map chownSecret (builtins.attrValues cfg.secrets))
-  );
-
-  secretType = types.submodule (
-    { config, ... }:
-    {
-      options = {
-        name = mkOption {
-          type = types.str;
-          default = config._module.args.name;
-          defaultText = literalExpression "config._module.args.name";
-          description = ''
-            Name of the file used in {option}`age.secretsDir`
-          '';
-        };
-        file = mkOption {
-          type = types.path;
-          description = ''
-            Age file the secret is loaded from.
-          '';
-        };
-        path = mkOption {
-          type = types.str;
-          default = "${cfg.secretsDir}/${config.name}";
-          defaultText = literalExpression ''
-            "''${cfg.secretsDir}/''${config.name}"
-          '';
-          description = ''
-            Path where the decrypted secret is installed.
-          '';
-        };
-        mode = mkOption {
-          type = types.str;
-          default = "0400";
-          description = ''
-            Permissions mode of the decrypted secret in a format understood by chmod.
-          '';
-        };
-        owner = mkOption {
-          type = types.str;
-          default = "0";
-          description = ''
-            User of the decrypted secret.
-          '';
-        };
-        group = mkOption {
-          type = types.str;
-          default = users.${config.owner}.group or "0";
-          defaultText = literalExpression ''
-            users.''${config.owner}.group or "0"
-          '';
-          description = ''
-            Group of the decrypted secret.
-          '';
-        };
-        symlink = mkEnableOption "symlinking secrets to their destination" // {
-          default = true;
-        };
-      };
-    }
-  );
-in
-{
-  imports = [
-    (mkRenamedOptionModule [ "age" "sshKeyPaths" ] [ "age" "identityPaths" ])
-  ];
-
-  options.age = {
-    ageBin = mkOption {
-      type = types.str;
-      default = "${pkgs.age}/bin/age";
-      defaultText = literalExpression ''
-        "''${pkgs.age}/bin/age"
-      '';
-      description = ''
-        The age executable to use.
-      '';
-    };
-    secrets = mkOption {
-      type = types.attrsOf secretType;
-      default = { };
-      description = ''
-        Attrset of secrets.
-      '';
-    };
-    secretsDir = mkOption {
-      type = types.path;
-      default = "/run/agenix";
-      description = ''
-        Folder where secrets are symlinked to
-      '';
-    };
-    secretsMountPoint = mkOption {
-      type =
-        types.addCheck types.str (
-          s:
-          (builtins.match "[ \t\n]*" s) == null # non-empty
-          && (builtins.match ".+/" s) == null
-        ) # without trailing slash
-        // {
-          description = "${types.str.description} (with check: non-empty without trailing slash)";
-        };
-      default = "/run/agenix.d";
-      description = ''
-        Where secrets are created before they are symlinked to {option}`age.secretsDir`
-      '';
-    };
-    identityPaths = mkOption {
-      type = types.listOf types.path;
-      default =
-        if isDarwin then
-          [
-            "/etc/ssh/ssh_host_ed25519_key"
-            "/etc/ssh/ssh_host_rsa_key"
-          ]
-        else if (config.services.openssh.enable or false) then
-          map (e: e.path) (
-            lib.filter (e: e.type == "rsa" || e.type == "ed25519") config.services.openssh.hostKeys
-          )
-        else
-          [ ];
-      defaultText = literalExpression ''
-        if isDarwin
-        then [
-          "/etc/ssh/ssh_host_ed25519_key"
-          "/etc/ssh/ssh_host_rsa_key"
-        ]
-        else if (config.services.openssh.enable or false)
-        then map (e: e.path) (lib.filter (e: e.type == "rsa" || e.type == "ed25519") config.services.openssh.hostKeys)
-        else [];
-      '';
-      description = ''
-        Path to SSH keys to be used as identities in age decryption.
-      '';
-    };
-  };
-
-  config = mkIf (cfg.secrets != { }) (mkMerge [
-    {
-      assertions = [
-        {
-          assertion = cfg.identityPaths != [ ];
-          message = "age.identityPaths must be set, for example by enabling openssh.";
-        }
-      ];
-    }
-    (optionalAttrs (!isDarwin) {
-      # When using sysusers we no longer be started as an activation script
-      # because those are started in initrd while sysusers is started later.
-      systemd.services.agenix-install-secrets = mkIf sysusersEnabled {
-        wantedBy = [ "sysinit.target" ];
-        after = [ "systemd-sysusers.service" ];
-        unitConfig.DefaultDependencies = "no";
-
-        path = [ pkgs.mount ];
-        serviceConfig = {
-          Type = "oneshot";
-          ExecStart = pkgs.writeShellScript "agenix-install" (concatLines [
-            newGeneration
-            installSecrets
-            chownSecrets
-          ]);
-          RemainAfterExit = true;
-        };
-      };
-
-      # Create a new directory full of secrets for symlinking (this helps
-      # ensure removed secrets are actually removed, or at least become
-      # invalid symlinks).
-      system.activationScripts = mkIf (!sysusersEnabled) {
-        agenixNewGeneration = {
-          text = newGeneration;
-          deps = [
-            "specialfs"
-          ];
-        };
-
-        agenixInstall = {
-          text = installSecrets;
-          deps = [
-            "agenixNewGeneration"
-            "specialfs"
-          ];
-        };
-
-        # So user passwords can be encrypted.
-        users.deps = [ "agenixInstall" ];
-
-        # Change ownership and group after users and groups are made.
-        agenixChown = {
-          text = chownSecrets;
-          deps = [
-            "users"
-            "groups"
-          ];
-        };
-
-        # So other activation scripts can depend on agenix being done.
-        agenix = {
-          text = "";
-          deps = [ "agenixChown" ];
-        };
-      };
-    })
-
-    (optionalAttrs isDarwin {
-      launchd.daemons.activate-agenix = {
-        script = ''
-          set -e
-          set -o pipefail
-          export PATH="${pkgs.gnugrep}/bin:${pkgs.coreutils}/bin:@out@/sw/bin:/usr/bin:/bin:/usr/sbin:/sbin"
-          ${newGeneration}
-          ${installSecrets}
-          ${chownSecrets}
-          exit 0
-        '';
-        serviceConfig = {
-          RunAtLoad = true;
-          KeepAlive.SuccessfulExit = false;
-        };
-      };
-    })
-  ]);
-}

m/module/slurm-client.nix

@@ -1,4 +1,4 @@
-{ lib, pkgs, ... }:
+{ lib, ... }:
 
 {
   imports = [
@@ -21,20 +21,4 @@
   };
 
   services.slurm.client.enable = true;
-
-  # Only allow SSH connections from users who have a SLURM allocation
-  # See: https://slurm.schedmd.com/pam_slurm_adopt.html
-  security.pam.services.sshd.rules.account.slurm = {
-    control = "required";
-    enable = true;
-    modulePath = "${pkgs.slurm}/lib/security/pam_slurm_adopt.so";
-    args = [ "log_level=debug5" ];
-    order = 999999; # Make it last one
-  };
-
-  # Disable systemd session (pam_systemd.so) as it will conflict with the
-  # pam_slurm_adopt.so module. What happens is that the shell is first adopted
-  # into the slurmstepd task and then into the systemd session, which is not
-  # what we want, otherwise it will linger even if all jobs are gone.
-  security.pam.services.sshd.startSession = lib.mkForce false;
 }

m/module/slurm-common.nix

@@ -1,6 +1,31 @@
 { config, pkgs, ... }:
 
-{
+let
+  suspendProgram = pkgs.writeShellScript "suspend.sh" ''
+    exec 1>>/var/log/power_save.log 2>>/var/log/power_save.log
+    set -x
+    export "PATH=/run/current-system/sw/bin:$PATH"
+    echo "$(date) Suspend invoked $0 $*" >> /var/log/power_save.log
+    hosts=$(scontrol show hostnames $1)
+    for host in $hosts; do
+      echo Shutting down host: $host
+      ipmitool -I lanplus -H ''${host}-ipmi -P "" -U "" chassis power off
+    done
+  '';
+
+  resumeProgram = pkgs.writeShellScript "resume.sh" ''
+    exec 1>>/var/log/power_save.log 2>>/var/log/power_save.log
+    set -x
+    export "PATH=/run/current-system/sw/bin:$PATH"
+    echo "$(date) Suspend invoked $0 $*" >> /var/log/power_save.log
+    hosts=$(scontrol show hostnames $1)
+    for host in $hosts; do
+      echo Starting host: $host
+      ipmitool -I lanplus -H ''${host}-ipmi -P "" -U "" chassis power on
+    done
+  '';
+
+in {
   services.slurm = {
     controlMachine = "apex";
     clusterName = "jungle";
@@ -34,6 +59,16 @@
       # the resources. Use the task/cgroup plugin to enable process containment.
       TaskPlugin=task/affinity,task/cgroup
 
+      # Power off unused nodes until they are requested
+      SuspendProgram=${suspendProgram}
+      SuspendTimeout=60
+      ResumeProgram=${resumeProgram}
+      ResumeTimeout=300
+      SuspendExcNodes=fox
+
+      # Turn the nodes off after 1 hour of inactivity
+      SuspendTime=3600
+
       # Reduce port range so we can allow only this range in the firewall
       SrunPortRange=60000-61000
 
@@ -51,7 +86,9 @@
       # when a task runs (srun) so we can ssh early.
       PrologFlags=Alloc,Contain,X11
 
-      LaunchParameters=use_interactive_step
+      # LaunchParameters=ulimit_pam_adopt will set RLIMIT_RSS in processes
+      # adopted by the external step, similar to tasks running in regular steps
+      # LaunchParameters=ulimit_pam_adopt
       SlurmdDebug=debug5
       #DebugFlags=Protocol,Cgroup
     '';

m/tent/nginx.nix

@@ -4,8 +4,8 @@ let
     name = "jungle-web";
     src = pkgs.fetchgit {
       url = "https://jungle.bsc.es/git/rarias/jungle-website.git";
-      rev = "52abaf4d71652a9ef77a0b098db14ca33bffff4c";
-      hash = "sha256-/ul9GazbOrOkmlvSgDz/+2W+V+ir5725Y7mVLc3rb0M=";
+      rev = "739bf0175a7f05380fe7ad7023ff1d60db1710e1";
+      hash = "sha256-ea5DzhYTzZ9TmqD+x95rdNdLbxPnBluqlYH2NmBYmc4=";
     };
     buildInputs = [ pkgs.hugo ];
     buildPhase = ''

overlay.nix

@@ -1,161 +0,0 @@
-final: /* Future last stage */
-prev:  /* Previous stage */
-
-with final.lib;
-
-let
-  callPackage = final.callPackage;
-
-  bscPkgs = {
-    agenix = prev.callPackage ./pkgs/agenix/default.nix { };
-    amd-uprof = prev.callPackage ./pkgs/amd-uprof/default.nix { };
-    bench6 = callPackage ./pkgs/bench6/default.nix { };
-    bigotes = callPackage ./pkgs/bigotes/default.nix { };
-    clangOmpss2 = callPackage ./pkgs/llvm-ompss2/default.nix { };
-    clangOmpss2Nanos6 = callPackage ./pkgs/llvm-ompss2/default.nix { ompss2rt = final.nanos6; };
-    clangOmpss2Nodes = callPackage ./pkgs/llvm-ompss2/default.nix { ompss2rt = final.nodes; openmp = final.openmp; };
-    clangOmpss2NodesOmpv = callPackage ./pkgs/llvm-ompss2/default.nix { ompss2rt = final.nodes; openmp = final.openmpv; };
-    clangOmpss2Unwrapped = callPackage ./pkgs/llvm-ompss2/clang.nix { };
-    cudainfo = prev.callPackage ./pkgs/cudainfo/default.nix { };
-    #extrae = callPackage ./pkgs/extrae/default.nix { }; # Broken and outdated
-    gpi-2 = callPackage ./pkgs/gpi-2/default.nix { };
-    intelPackages_2023 = callPackage ./pkgs/intel-oneapi/2023.nix { };
-    jemallocNanos6 = callPackage ./pkgs/nanos6/jemalloc.nix { };
-    # FIXME: Extend this to all linuxPackages variants. Open problem, see:
-    # https://discourse.nixos.org/t/whats-the-right-way-to-make-a-custom-kernel-module-available/4636
-    linuxPackages = prev.linuxPackages.extend (_final: _prev: {
-      amd-uprof-driver = _prev.callPackage ./pkgs/amd-uprof/driver.nix { };
-    });
-    linuxPackages_latest = prev.linuxPackages_latest.extend(_final: _prev: {
-      amd-uprof-driver = _prev.callPackage ./pkgs/amd-uprof/driver.nix { };
-    });
-    lmbench = callPackage ./pkgs/lmbench/default.nix { };
-    mcxx = callPackage ./pkgs/mcxx/default.nix { };
-    meteocat-exporter = prev.callPackage ./pkgs/meteocat-exporter/default.nix { };
-    mpi = final.mpich; # Set MPICH as default
-    mpich = callPackage ./pkgs/mpich/default.nix { mpich = prev.mpich; };
-    nanos6 = callPackage ./pkgs/nanos6/default.nix { };
-    nanos6Debug = final.nanos6.override { enableDebug = true; };
-    nixtools = callPackage ./pkgs/nixtools/default.nix { };
-    nixgen = callPackage ./pkgs/nixgen/default.nix { };
-    # Broken because of pkgsStatic.libcap
-    # See: https://github.com/NixOS/nixpkgs/pull/268791
-    #nix-wrap = callPackage ./pkgs/nix-wrap/default.nix { };
-    nodes = callPackage ./pkgs/nodes/default.nix { };
-    nosv = callPackage ./pkgs/nosv/default.nix { };
-    openmp = callPackage ./pkgs/llvm-ompss2/openmp.nix { monorepoSrc = final.clangOmpss2Unwrapped.src; version = final.clangOmpss2Unwrapped.version; };
-    openmpv = final.openmp.override { enableNosv = true; enableOvni = true; };
-    osumb = callPackage ./pkgs/osu/default.nix { };
-    ovni = callPackage ./pkgs/ovni/default.nix { };
-    ovniGit = final.ovni.override { useGit = true; };
-    paraverKernel = callPackage ./pkgs/paraver/kernel.nix { };
-    prometheus-slurm-exporter = prev.callPackage ./pkgs/slurm-exporter/default.nix { };
-    #pscom = callPackage ./pkgs/parastation/pscom.nix { }; # Unmaintaned
-    #psmpi = callPackage ./pkgs/parastation/psmpi.nix { }; # Unmaintaned
-    slurm = import ./pkgs/slurm/default.nix { slurm = prev.slurm; };
-    sonar = callPackage ./pkgs/sonar/default.nix { };
-    stdenvClangOmpss2 = final.stdenv.override { cc = final.clangOmpss2; allowedRequisites = null; };
-    stdenvClangOmpss2Nanos6 = final.stdenv.override { cc = final.clangOmpss2Nanos6; allowedRequisites = null; };
-    stdenvClangOmpss2Nodes = final.stdenv.override { cc = final.clangOmpss2Nodes; allowedRequisites = null; };
-    stdenvClangOmpss2NodesOmpv = final.stdenv.override { cc = final.clangOmpss2NodesOmpv; allowedRequisites = null; };
-    tagaspi = callPackage ./pkgs/tagaspi/default.nix { };
-    tampi = callPackage ./pkgs/tampi/default.nix { };
-    upc-qaire-exporter = prev.callPackage ./pkgs/upc-qaire-exporter/default.nix { };
-    wxparaver = callPackage ./pkgs/paraver/default.nix { };
-  };
-
-  tests = rec {
-    hwloc = callPackage ./test/bugs/hwloc.nix { };
-    #sigsegv = callPackage ./test/reproducers/sigsegv.nix { };
-    hello-c = callPackage ./test/compilers/hello-c.nix { };
-    hello-cpp = callPackage ./test/compilers/hello-cpp.nix { };
-    lto = callPackage ./test/compilers/lto.nix { };
-    asan = callPackage ./test/compilers/asan.nix { };
-    intel2023-icx-c   = hello-c.override   { stdenv = final.intelPackages_2023.stdenv; };
-    intel2023-icc-c   = hello-c.override   { stdenv = final.intelPackages_2023.stdenv-icc; };
-    intel2023-icx-cpp = hello-cpp.override { stdenv = final.intelPackages_2023.stdenv; };
-    intel2023-icc-cpp = hello-cpp.override { stdenv = final.intelPackages_2023.stdenv-icc; };
-    intel2023-ifort   = callPackage ./test/compilers/hello-f.nix {
-      stdenv = final.intelPackages_2023.stdenv-ifort;
-    };
-    clangOmpss2-lto   = lto.override       { stdenv = final.stdenvClangOmpss2Nanos6; };
-    clangOmpss2-asan  = asan.override      { stdenv = final.stdenvClangOmpss2Nanos6; };
-    clangOmpss2-task  = callPackage ./test/compilers/ompss2.nix {
-      stdenv = final.stdenvClangOmpss2Nanos6;
-    };
-    clangNodes-task = callPackage ./test/compilers/ompss2.nix {
-      stdenv = final.stdenvClangOmpss2Nodes;
-    };
-    clangNosvOpenmp-task = callPackage ./test/compilers/clang-openmp.nix {
-      stdenv = final.stdenvClangOmpss2Nodes;
-    };
-    clangNosvOmpv-nosv = callPackage ./test/compilers/clang-openmp-nosv.nix {
-      stdenv = final.stdenvClangOmpss2NodesOmpv;
-    };
-    clangNosvOmpv-ld = callPackage ./test/compilers/clang-openmp-ld.nix {
-      stdenv = final.stdenvClangOmpss2NodesOmpv;
-    };
-  };
-
-  # For now, only build toplevel packages in CI/Hydra
-  pkgsTopLevel = filterAttrs (_: isDerivation) bscPkgs;
-
-  # Native build in that platform doesn't imply cross build works
-  canCrossCompile = platform: default: pkg:
-    (isDerivation pkg) &&
-    # If meta.cross is undefined, use default
-    (pkg.meta.cross or default) &&
-    (meta.availableOn final.pkgsCross.${platform}.stdenv.hostPlatform pkg);
-
-  # For now only RISC-V
-  crossSet = genAttrs [ "riscv64" ] (platform:
-    filterAttrs (_: canCrossCompile platform true)
-      final.pkgsCross.${platform}.bsc.pkgsTopLevel);
-
-  buildList = name: paths:
-    final.runCommandLocal name { } ''
-      printf '%s\n' ${toString paths} | tee $out
-    '';
-
-  buildList' = name: paths:
-    final.runCommandLocal name { } ''
-      deps="${toString paths}"
-      cat $deps
-      printf '%s\n' $deps >$out
-    '';
-
-  pkgsList = buildList "ci-pkgs" (builtins.attrValues pkgsTopLevel);
-  testsList = buildList "ci-tests" (collect isDerivation tests);
-  allList = buildList' "ci-all" [ pkgsList testsList ];
-  # For now only RISC-V
-  crossList = buildList "ci-cross"
-    (filter
-      (canCrossCompile "riscv64" false) # opt-in (pkgs with: meta.cross = true)
-        (builtins.attrValues crossSet.riscv64));
-
-in bscPkgs // {
-
-  lib = prev.lib // {
-    maintainers = prev.lib.maintainers // {
-      bsc = import ./pkgs/maintainers.nix;
-    };
-  };
-
-  # Prevent accidental usage of bsc-ci attribute
-  bsc-ci = throw "the bsc-ci attribute is deprecated, use bsc.ci";
-
-  # Internal for our CI tests
-  bsc = {
-    # CI targets for nix build
-    ci = { pkgs = pkgsList; tests = testsList; all = allList; cross = crossList; };
-
-    # Direct access to package sets
-    tests = tests;
-    pkgs = bscPkgs;
-    pkgsTopLevel = pkgsTopLevel;
-    cross = crossSet;
-
-    # Hydra uses attribute sets of pkgs
-    hydraJobs = { tests = tests; pkgs = pkgsTopLevel; cross = crossSet; };
-  };
-}

pkgs/agenix/agenix.sh

@@ -1,212 +0,0 @@
-#!/usr/bin/env bash
-set -Eeuo pipefail
-
-PACKAGE="agenix"
-
-function show_help () {
-  echo "$PACKAGE - edit and rekey age secret files"
-  echo " "
-  echo "$PACKAGE -e FILE [-i PRIVATE_KEY]"
-  echo "$PACKAGE -r [-i PRIVATE_KEY]"
-  echo ' '
-  echo 'options:'
-  echo '-h, --help                show help'
-  # shellcheck disable=SC2016
-  echo '-e, --edit FILE           edits FILE using $EDITOR'
-  echo '-r, --rekey               re-encrypts all secrets with specified recipients'
-  echo '-d, --decrypt FILE        decrypts FILE to STDOUT'
-  echo '-i, --identity            identity to use when decrypting'
-  echo '-v, --verbose             verbose output'
-  echo ' '
-  echo 'FILE an age-encrypted file'
-  echo ' '
-  echo 'PRIVATE_KEY a path to a private SSH key used to decrypt file'
-  echo ' '
-  echo 'EDITOR environment variable of editor to use when editing FILE'
-  echo ' '
-  echo 'If STDIN is not interactive, EDITOR will be set to "cp /dev/stdin"'
-  echo ' '
-  echo 'RULES environment variable with path to Nix file specifying recipient public keys.'
-  echo "Defaults to './secrets.nix'"
-  echo ' '
-  echo "agenix version: @version@"
-  echo "age binary path: @ageBin@"
-  echo "age version: $(@ageBin@ --version)"
-}
-
-function warn() {
-  printf '%s\n' "$*" >&2
-}
-
-function err() {
-  warn "$*"
-  exit 1
-}
-
-test $# -eq 0 && (show_help && exit 1)
-
-REKEY=0
-DECRYPT_ONLY=0
-DEFAULT_DECRYPT=(--decrypt)
-
-while test $# -gt 0; do
-  case "$1" in
-    -h|--help)
-      show_help
-      exit 0
-      ;;
-    -e|--edit)
-      shift
-      if test $# -gt 0; then
-        export FILE=$1
-      else
-        echo "no FILE specified"
-        exit 1
-      fi
-      shift
-      ;;
-    -i|--identity)
-      shift
-      if test $# -gt 0; then
-        DEFAULT_DECRYPT+=(--identity "$1")
-      else
-        echo "no PRIVATE_KEY specified"
-        exit 1
-      fi
-      shift
-      ;;
-    -r|--rekey)
-      shift
-      REKEY=1
-      ;;
-    -d|--decrypt)
-      shift
-      DECRYPT_ONLY=1
-      if test $# -gt 0; then
-        export FILE=$1
-      else
-        echo "no FILE specified"
-        exit 1
-      fi
-      shift
-      ;;
-    -v|--verbose)
-      shift
-      set -x
-      ;;
-    *)
-      show_help
-      exit 1
-      ;;
-  esac
-done
-
-RULES=${RULES:-./secrets.nix}
-function cleanup {
-    if [ -n "${CLEARTEXT_DIR+x}" ]
-    then
-        rm -rf -- "$CLEARTEXT_DIR"
-    fi
-    if [ -n "${REENCRYPTED_DIR+x}" ]
-    then
-        rm -rf -- "$REENCRYPTED_DIR"
-    fi
-}
-trap "cleanup" 0 2 3 15
-
-function keys {
-    (@nixInstantiate@ --json --eval --strict -E "(let rules = import $RULES; in rules.\"$1\".publicKeys)" | @jqBin@ -r .[]) || exit 1
-}
-
-function armor {
-    (@nixInstantiate@ --json --eval --strict -E "(let rules = import $RULES; in (builtins.hasAttr \"armor\" rules.\"$1\" && rules.\"$1\".armor))") || exit 1
-}
-
-function decrypt {
-    FILE=$1
-    KEYS=$2
-    if [ -z "$KEYS" ]
-    then
-        err "There is no rule for $FILE in $RULES."
-    fi
-
-    if [ -f "$FILE" ]
-    then
-        DECRYPT=("${DEFAULT_DECRYPT[@]}")
-        if [[ "${DECRYPT[*]}" != *"--identity"* ]]; then
-            if [ -f "$HOME/.ssh/id_rsa" ]; then
-                DECRYPT+=(--identity "$HOME/.ssh/id_rsa")
-            fi
-            if [ -f "$HOME/.ssh/id_ed25519" ]; then
-                DECRYPT+=(--identity "$HOME/.ssh/id_ed25519")
-            fi
-        fi
-        if [[ "${DECRYPT[*]}" != *"--identity"* ]]; then
-          err "No identity found to decrypt $FILE. Try adding an SSH key at $HOME/.ssh/id_rsa or $HOME/.ssh/id_ed25519 or using the --identity flag to specify a file."
-        fi
-
-        @ageBin@ "${DECRYPT[@]}" -- "$FILE" || exit 1
-    fi
-}
-
-function edit {
-    FILE=$1
-    KEYS=$(keys "$FILE") || exit 1
-    ARMOR=$(armor "$FILE") || exit 1
-
-    CLEARTEXT_DIR=$(@mktempBin@ -d)
-    CLEARTEXT_FILE="$CLEARTEXT_DIR/$(basename -- "$FILE")"
-    DEFAULT_DECRYPT+=(-o "$CLEARTEXT_FILE")
-
-    decrypt "$FILE" "$KEYS" || exit 1
-
-    [ ! -f "$CLEARTEXT_FILE" ] || cp -- "$CLEARTEXT_FILE" "$CLEARTEXT_FILE.before"
-
-    [ -t 0 ] || EDITOR='cp -- /dev/stdin'
-
-    $EDITOR "$CLEARTEXT_FILE"
-
-    if [ ! -f "$CLEARTEXT_FILE" ]
-    then
-      warn "$FILE wasn't created."
-      return
-    fi
-    [ -f "$FILE" ] && [ "$EDITOR" != ":" ] && @diffBin@ -q -- "$CLEARTEXT_FILE.before" "$CLEARTEXT_FILE" && warn "$FILE wasn't changed, skipping re-encryption." && return
-
-    ENCRYPT=()
-    if [[ "$ARMOR" == "true" ]]; then
-        ENCRYPT+=(--armor)
-    fi
-    while IFS= read -r key
-    do
-        if [ -n "$key" ]; then
-            ENCRYPT+=(--recipient "$key")
-        fi
-    done <<< "$KEYS"
-
-    REENCRYPTED_DIR=$(@mktempBin@ -d)
-    REENCRYPTED_FILE="$REENCRYPTED_DIR/$(basename -- "$FILE")"
-
-    ENCRYPT+=(-o "$REENCRYPTED_FILE")
-
-    @ageBin@ "${ENCRYPT[@]}" <"$CLEARTEXT_FILE" || exit 1
-
-    mkdir -p -- "$(dirname -- "$FILE")"
-
-    mv -f -- "$REENCRYPTED_FILE" "$FILE"
-}
-
-function rekey {
-    FILES=$( (@nixInstantiate@ --json --eval -E "(let rules = import $RULES; in builtins.attrNames rules)"  | @jqBin@ -r .[]) || exit 1)
-
-    for FILE in $FILES
-    do
-        warn "rekeying $FILE..."
-        EDITOR=: edit "$FILE"
-        cleanup
-    done
-}
-
-[ $REKEY -eq 1 ] && rekey && exit 0
-[ $DECRYPT_ONLY -eq 1 ] && DEFAULT_DECRYPT+=("-o" "-") && decrypt "${FILE}" "$(keys "$FILE")" && exit 0
-edit "$FILE" && cleanup && exit 0

pkgs/agenix/default.nix

@@ -1,66 +0,0 @@
-{
-  lib,
-  stdenv,
-  age,
-  jq,
-  nix,
-  mktemp,
-  diffutils,
-  replaceVars,
-  ageBin ? "${age}/bin/age",
-  shellcheck,
-}:
-let
-  bin = "${placeholder "out"}/bin/agenix";
-in
-stdenv.mkDerivation rec {
-  pname = "agenix";
-  version = "0.15.0";
-  src = replaceVars ./agenix.sh {
-    inherit ageBin version;
-    jqBin = "${jq}/bin/jq";
-    nixInstantiate = "${nix}/bin/nix-instantiate";
-    mktempBin = "${mktemp}/bin/mktemp";
-    diffBin = "${diffutils}/bin/diff";
-  };
-  dontUnpack = true;
-  doInstallCheck = true;
-  installCheckInputs = [ shellcheck ];
-  postInstallCheck = ''
-    shellcheck ${bin}
-    ${bin} -h | grep ${version}
-
-    test_tmp=$(mktemp -d 2>/dev/null || mktemp -d -t 'mytmpdir')
-    export HOME="$test_tmp/home"
-    export NIX_STORE_DIR="$test_tmp/nix/store"
-    export NIX_STATE_DIR="$test_tmp/nix/var"
-    mkdir -p "$HOME" "$NIX_STORE_DIR" "$NIX_STATE_DIR"
-    function cleanup {
-      rm -rf "$test_tmp"
-    }
-    trap "cleanup" 0 2 3 15
-
-    mkdir -p $HOME/.ssh
-    cp -r "${./example}" $HOME/secrets
-    chmod -R u+rw $HOME/secrets
-    (
-    umask u=rw,g=r,o=r
-    cp ${./example_keys/user1.pub} $HOME/.ssh/id_ed25519.pub
-    chown $UID $HOME/.ssh/id_ed25519.pub
-    )
-    (
-    umask u=rw,g=,o=
-    cp ${./example_keys/user1} $HOME/.ssh/id_ed25519
-    chown $UID $HOME/.ssh/id_ed25519
-    )
-
-    cd $HOME/secrets
-    test $(${bin} -d secret1.age) = "hello"
-  '';
-
-  installPhase = ''
-    install -D $src ${bin}
-  '';
-
-  meta.description = "age-encrypted secrets for NixOS";
-}

pkgs/agenix/example/-leading-hyphen-filename.age

@@ -1,7 +0,0 @@
-age-encryption.org/v1
--> ssh-ed25519 V3XmEA zirqdzZZ1E+sedBn7fbEHq4ntLEkokZ4GctarBBOHXY
-Rvs5YHaAUeCZyNwPedubPcHClWYIuXXWA5zadXPWY6w
--> ssh-ed25519 KLPP8w BVp4rDkOYSQyn8oVeHFeinSqW+pdVtxBF9+5VM1yORY
-bMwppAi8Nhz0328taU4AzUkTVyWtSLvFZG6c5W/Fs78
---- xCbqLhXAcOziO2wmbjTiSQfZvt5Rlsc4SCvF+iEzpQA
-ôKB£î/²ZÅÈrÙ%
¾à4¡´—Mq5×Ô_ÌÂÝ’‹†ã„Ò11ܨqM;& ¢‡LríÂÒføû”]>N

pkgs/agenix/example/armored-secret.age

@@ -1,7 +0,0 @@
------BEGIN AGE ENCRYPTED FILE-----
-YWdlLWVuY3J5cHRpb24ub3JnL3YxCi0+IHNzaC1lZDI1NTE5IFYzWG1FQSBpZkZW
-aFpLNnJxc0VUMHRmZ2dZS0pjMGVENnR3OHd5K0RiT1RjRUhibFZBCnN5UG5vUjA3
-SXpsNGtiVUw4T0tIVFo5Wkk5QS9NQlBndzVvektiQ0ozc0kKLS0tIGxyY1Q4dEZ1
-VGZEanJyTFNta2JNRmpZb2FnK2JyS1hSVml1UGdMNWZKQXMKYla+wTXcRedyZoEb
-LVWaSx49WoUTU0KBPJg9RArxaeC23GoCDzR/aM/1DvYU
------END AGE ENCRYPTED FILE-----

pkgs/agenix/example/passwordfile-user1.age

@@ -1,9 +0,0 @@
-age-encryption.org/v1
--> ssh-ed25519 KLPP8w s1DYZRlZuSsyhmZCF1lFB+E9vB8bZ/+ZhBRlx8nprwE
-nmYVCsVBrX2CFXXPU+D+bbkkIe/foofp+xoUrg9DHZw
--> ssh-ed25519 V3XmEA Pwv3oCwcY0DX8rY48UNfsj9RumWsn4dbgorYHCwObgI
-FKxRYkL3JHtJxUwymWDF0rAtJ33BivDI6IfPsfumM90
--> V'v(/u$-grease em/Vgf 2qDuk
-7I3iiQLPGi1COML9u/JeYkr7EqbSLoU
---- 57WJRigUGtmcObrssS3s4PvmR8wgh1AOC/ijJn1s3xI
-<EFBFBD>'K©Æ·Y&‘7GÆOÝòFj
±kÆXç«BnuJöê:9Ê(’ÙÏX¬#¼AíÄÞÃÚ§j’,ê_ÈþÝ?ÝZ“¥vœ¹V’96]oks~%£c	Îe^CÅ%JQ5€<H¢z}îCý,°pŒ¿*!W§§ÈA±º­Ò…dC¼K)¿¢-žy

pkgs/agenix/example/secret2.age

@@ -1,5 +0,0 @@
-age-encryption.org/v1
--> ssh-ed25519 V3XmEA OB4+1FbPhQ3r6iGksM7peWX5it8NClpXIq/o5nnP7GA
-FmHVUj+A5i5+bDFgySQskmlvynnosJiWUTJmBRiNA9I
---- tP+3mFVtd7ogVu1Lkboh55zoi5a77Ht08Uc/QuIviv4
-¤¬Xæ{”ïOŠ£èätMXxÔvÓª(¬IÁmyPÇï¸è+3²S3i

pkgs/agenix/example/secrets.nix

@@ -1,23 +0,0 @@
-let
-  user1 = "ssh-ed25519 AAAAC3NzaC1lZDI1NTE5AAAAIL0idNvgGiucWgup/mP78zyC23uFjYq0evcWdjGQUaBH";
-  system1 = "ssh-ed25519 AAAAC3NzaC1lZDI1NTE5AAAAIPJDyIr/FSz1cJdcoW69R+NrWzwGK/+3gJpqD1t8L2zE";
-in
-{
-  "secret1.age".publicKeys = [
-    user1
-    system1
-  ];
-  "secret2.age".publicKeys = [ user1 ];
-  "passwordfile-user1.age".publicKeys = [
-    user1
-    system1
-  ];
-  "-leading-hyphen-filename.age".publicKeys = [
-    user1
-    system1
-  ];
-  "armored-secret.age" = {
-    publicKeys = [ user1 ];
-    armor = true;
-  };
-}

pkgs/agenix/example_keys/system1

@@ -1,7 +0,0 @@
------BEGIN OPENSSH PRIVATE KEY-----
-b3BlbnNzaC1rZXktdjEAAAAABG5vbmUAAAAEbm9uZQAAAAAAAAABAAAAMwAAAAtzc2gtZW
-QyNTUxOQAAACDyQ8iK/xUs9XCXXKFuvUfja1s8Biv/t4Caag9bfC9sxAAAAJA3yvCWN8rw
-lgAAAAtzc2gtZWQyNTUxOQAAACDyQ8iK/xUs9XCXXKFuvUfja1s8Biv/t4Caag9bfC9sxA
-AAAEA+J2V6AG1NriAIvnNKRauIEh1JE9HSdhvKJ68a5Fm0w/JDyIr/FSz1cJdcoW69R+Nr
-WzwGK/+3gJpqD1t8L2zEAAAADHJ5YW50bUBob21lMQE=
------END OPENSSH PRIVATE KEY-----

pkgs/agenix/example_keys/system1.pub

@@ -1 +0,0 @@
-ssh-ed25519 AAAAC3NzaC1lZDI1NTE5AAAAIPJDyIr/FSz1cJdcoW69R+NrWzwGK/+3gJpqD1t8L2zE

pkgs/agenix/example_keys/user1

@@ -1,7 +0,0 @@
------BEGIN OPENSSH PRIVATE KEY-----
-b3BlbnNzaC1rZXktdjEAAAAABG5vbmUAAAAEbm9uZQAAAAAAAAABAAAAMwAAAAtzc2gtZW
-QyNTUxOQAAACC9InTb4BornFoLqf5j+/M8gtt7hY2KtHr3FnYxkFGgRwAAAJC2JJ8htiSf
-IQAAAAtzc2gtZWQyNTUxOQAAACC9InTb4BornFoLqf5j+/M8gtt7hY2KtHr3FnYxkFGgRw
-AAAEDxt5gC/s53IxiKAjfZJVCCcFIsdeERdIgbYhLO719+Kb0idNvgGiucWgup/mP78zyC
-23uFjYq0evcWdjGQUaBHAAAADHJ5YW50bUBob21lMQE=
------END OPENSSH PRIVATE KEY-----

pkgs/agenix/example_keys/user1.pub

@@ -1 +0,0 @@
-ssh-ed25519 AAAAC3NzaC1lZDI1NTE5AAAAIL0idNvgGiucWgup/mP78zyC23uFjYq0evcWdjGQUaBH

pkgs/agenix/update.sh

@@ -1,23 +0,0 @@
-#!/bin/sh
-
-set -e
-
-# All operations are done relative to root
-GITROOT=$(git rev-parse --show-toplevel)
-cd "$GITROOT"
-
-REVISION=${1:-main}
-
-TMPCLONE=$(mktemp -d)
-trap "rm -rf ${TMPCLONE}" EXIT
-
-git clone https://github.com/ryantm/agenix.git --revision="$REVISION" "$TMPCLONE" --depth=1
-
-cp "${TMPCLONE}/pkgs/agenix.sh" pkgs/agenix/agenix.sh
-cp "${TMPCLONE}/pkgs/agenix.nix" pkgs/agenix/default.nix
-sed -i 's#../example#./example#' pkgs/agenix/default.nix
-
-cp "${TMPCLONE}/example/"* pkgs/agenix/example/
-cp "${TMPCLONE}/example_keys/"* pkgs/agenix/example_keys/
-
-cp "${TMPCLONE}/modules/age.nix" m/module/agenix.nix

pkgs/amd-uprof/default.nix

@@ -86,13 +86,4 @@ in
       patchelf --add-needed libnuma.so $out/bin/AMDuProfPcm
       set +x
     '';
-
-    meta = {
-      description = "Performance analysis tool-suite for x86 based applications";
-      homepage = "https://www.amd.com/es/developer/uprof.html";
-      platforms = [ "x86_64-linux" ];
-      license = lib.licenses.unfree;
-      maintainers = with lib.maintainers.bsc; [ rarias varcila ];
-    };
-
   }

pkgs/amd-uprof/driver.nix

@@ -29,7 +29,5 @@ in stdenv.mkDerivation {
     description = "AMD Power Profiler Driver";
     homepage = "https://www.amd.com/es/developer/uprof.html";
     platforms = lib.platforms.linux;
-    license = lib.licenses.unfree;
-    maintainers = with lib.maintainers.bsc; [ rarias varcila ];
   };
 }

pkgs/babeltrace/default.nix

@@ -1,25 +0,0 @@
-{ stdenv, lib, fetchurl, pkg-config, glib, libuuid, popt, elfutils, swig4, python3 }:
-
-stdenv.mkDerivation rec {
-  name = "babeltrace-1.5.8";
-
-  src = fetchurl {
-    url = "https://www.efficios.com/files/babeltrace/${name}.tar.bz2";
-    sha256 = "1hkg3phnamxfrhwzmiiirbhdgckzfkqwhajl0lmr1wfps7j47wcz";
-  };
-
-  nativeBuildInputs = [ pkg-config ];
-  buildInputs = [ glib libuuid popt elfutils swig4 python3 ];
-
-  meta = with lib; {
-    description = "Command-line tool and library to read and convert LTTng tracefiles";
-    homepage = "https://www.efficios.com/babeltrace";
-    license = licenses.mit;
-    platforms = platforms.linux;
-    maintainers = [ maintainers.bjornfor ];
-  };
-
-  configureFlags = [
-    "--enable-python-bindings"
-  ];
-}

pkgs/babeltrace2/default.nix

@@ -1,34 +0,0 @@
-{
-  stdenv
-, fetchurl
-, pkg-config
-, glib
-, libuuid
-, popt
-, elfutils
-, python3
-, swig4
-, ncurses
-, breakpointHook
-}:
-
-stdenv.mkDerivation rec {
-  pname = "babeltrace2";
-  version = "2.0.3";
-
-  src = fetchurl {
-    url = "https://www.efficios.com/files/babeltrace/${pname}-${version}.tar.bz2";
-    sha256 = "1804pyq7fz6rkcz4r1abkkn0pfnss13m6fd8if32s42l4lajadm5";
-  };
-
-  enableParallelBuilding = true;
-  nativeBuildInputs = [ pkg-config ];
-  buildInputs = [ glib libuuid popt elfutils python3 swig4 ncurses breakpointHook ];
-  hardeningDisable = [ "all" ];
-
-  configureFlags = [
-    "--enable-python-plugins"
-    "--enable-python-bindings"
-  ];
-
-}

pkgs/bench6/default.nix

@@ -1,70 +0,0 @@
-{
-  stdenv
-, lib
-, bigotes
-, cmake
-, clangOmpss2
-, openmp
-, openmpv
-, nanos6
-, nodes
-, nosv
-, mpi
-, tampi
-, openblas
-, ovni
-, gitBranch ? "master"
-, gitURL ? "ssh://git@bscpm04.bsc.es/rarias/bench6.git"
-, gitCommit ? "bf29a53113737c3aa74d2fe3d55f59868faea7b4"
-}:
-
-stdenv.mkDerivation rec {
-  pname = "bench6";
-  version = "${src.shortRev}";
-
-  src = builtins.fetchGit {
-    url = gitURL;
-    ref = gitBranch;
-    rev = gitCommit;
-  };
-
-  nativeBuildInputs = [
-    cmake
-    clangOmpss2
-  ];
-
-  buildInputs = [
-    bigotes
-    openmp
-    openmpv
-    nanos6
-    nodes
-    nosv
-    mpi
-    tampi
-    openblas
-    openblas.dev
-    ovni
-  ];
-
-  env = {
-    NANOS6_HOME = nanos6;
-    NODES_HOME = nodes;
-    NOSV_HOME = nosv;
-  };
-
-  cmakeFlags = [
-    "-DCMAKE_C_COMPILER=clang"
-    "-DCMAKE_CXX_COMPILER=clang++"
-  ];
-  hardeningDisable = [ "all" ];
-  dontStrip = true;
-
-  meta = {
-    homepage = "https://gitlab.pm.bsc.es/rarias/bench6";
-    description = "Set of micro-benchmarks for OmpSs-2 and several mini-apps";
-    maintainers = with lib.maintainers.bsc; [ rarias ];
-    platforms = lib.platforms.linux;
-    license = lib.licenses.gpl3Plus;
-  };
-}

pkgs/bigotes/default.nix

@@ -1,26 +0,0 @@
-{
-  stdenv
-, lib
-, fetchFromGitHub
-, cmake
-}:
-
-stdenv.mkDerivation {
-  pname = "bigotes";
-  version = "9dce13";
-  src = fetchFromGitHub {
-    owner = "rodarima";
-    repo = "bigotes";
-    rev = "9dce13446a8da30bea552d569d260d54e0188518";
-    sha256 = "sha256-ktxM3pXiL8YXSK+/IKWYadijhYXqGoLY6adLk36iigE=";
-  };
-  nativeBuildInputs = [ cmake ];
-
-  meta = {
-    homepage = "https://github.com/rodarima/bigotes";
-    description = "Versatile benchmark tool";
-    maintainers = with lib.maintainers.bsc; [ rarias ];
-    platforms = lib.platforms.linux;
-    license = lib.licenses.gpl3Plus;
-  };
-}

pkgs/clsync/default.nix

@@ -1,54 +0,0 @@
-{ stdenv
-, fetchFromGitHub
-, libcap
-, libcgroup
-, libmhash
-, doxygen
-, graphviz
-, autoreconfHook
-, pkg-config
-, glib
-}:
-
-let
-  version = "0.4.4";
-
-in stdenv.mkDerivation {
-  pname = "clsync";
-  inherit version;
-
-  src = fetchFromGitHub {
-    repo = "clsync";
-    owner = "clsync";
-    rev = "v${version}";
-    sha256 = "0sdiyfwp0iqr6l1sirm51pirzmhi4jzgky5pzfj24nn71q3fwqgz";
-  };
-
-  outputs = [ "out" "dev" ];
-
-  buildInputs = [
-    autoreconfHook
-    libcap
-    libcgroup
-    libmhash
-    doxygen
-    graphviz
-    pkg-config
-    glib
-  ];
-
-  preConfigure = ''
-    ./configure --help
-  '';
-
-  enableParallelBuilding = true;
-
-  meta = with lib; {
-    description = "File live sync daemon based on inotify/kqueue/bsm (Linux, FreeBSD), written in GNU C";
-    homepage = "https://github.com/clsync/clsync";
-    license = licenses.gpl3Plus;
-    maintainers = [ ];
-    platforms = platforms.linux;
-  };
-}
-

pkgs/cn6/default.nix

@@ -1,51 +0,0 @@
-{
-  stdenv
-, lib
-, babeltrace2
-, pkg-config
-, uthash
-, enableTest ? false
-, mpi ? null
-, clangOmpss2 ? null
-, tampi ? null
-}:
-
-with lib;
-
-assert (enableTest -> (mpi != null));
-assert (enableTest -> (clangOmpss2 != null));
-assert (enableTest -> (tampi != null));
-
-stdenv.mkDerivation rec {
-  pname = "cn6";
-  version = "${src.shortRev}";
-
-  buildInputs = [
-    babeltrace2
-    pkg-config
-    uthash
-    mpi
-  ] ++ optionals (enableTest) [ mpi clangOmpss2 tampi ];
-
-  src = builtins.fetchGit {
-    url = "ssh://git@bscpm04.bsc.es/rarias/cn6.git";
-    ref = "master";
-    rev = "c72c3b66b720c2a33950f536fc819051c8f20a69";
-  };
-
-  makeFlags = [ "PREFIX=$(out)" ];
-
-  postBuild = optionalString (enableTest) ''
-    (
-      cd test
-      make timediff timediff_mpi
-    )
-  '';
-
-  postInstall = optionalString (enableTest) ''
-    (
-      cd test
-      cp timediff timediff_mpi sync-err.sh $out/bin/
-    )
-  '';
-}

pkgs/cpuid/default.nix

@@ -1,21 +0,0 @@
-{
-  stdenv
-, perl # For the pod2man command
-}:
-
-stdenv.mkDerivation rec {
-  version = "20201006";
-  pname = "cpuid";
-
-  buildInputs = [ perl ];
-
-  # Replace /usr install directory for $out
-  postPatch = ''
-    sed -i "s@/usr@$out@g" Makefile
-  '';
-
-  src = builtins.fetchTarball {
-    url = "http://www.etallen.com/cpuid/${pname}-${version}.src.tar.gz";
-    sha256 = "04qhs938gs1kjxpsrnfy6lbsircsprfyh4db62s5cf83a1nrwn9w";
-  };
-}

pkgs/cudainfo/default.nix

@@ -1,6 +1,5 @@
 {
   stdenv
-, lib
 , cudatoolkit
 , cudaPackages
 , autoAddDriverRunpath
@@ -41,9 +40,4 @@ stdenv.mkDerivation (finalAttrs: {
     '';
     installPhase = "touch $out";
   };
-
-  meta = {
-    platforms = [ "x86_64-linux" ];
-    maintainers = with lib.maintainers.bsc; [ rarias ];
-  };
 })

pkgs/dummy/default.nix

@@ -1,25 +0,0 @@
-{
-  stdenv
-}:
-
-stdenv.mkDerivation rec {
-  name = "dummy";
-
-  src = null;
-  dontUnpack = true;
-  dontBuild = true;
-
-  programPath = "/bin/dummy";
-
-  installPhase = ''
-    mkdir -p $out/bin
-
-    cat > $out/bin/dummy <<EOF
-    #!/bin/sh
-    echo Hello worlda!
-
-    EOF
-
-    chmod +x $out/bin/dummy
-  '';
-}

pkgs/extrae/PTR.patch

@@ -1,13 +0,0 @@
-diff --git a/src/merger/common/bfd_manager.c b/src/merger/common/bfd_manager.c
-index 5f9dacf9..5231e3eb 100644
---- a/src/merger/common/bfd_manager.c
-+++ b/src/merger/common/bfd_manager.c
-@@ -225,7 +225,7 @@ asymbol **BFDmanager_getDefaultSymbols (void)
-  *
-  * @return No return value.
-  */
--static void BFDmanager_findAddressInSection (bfd * abfd, asection * section, PTR data)
-+static void BFDmanager_findAddressInSection (bfd * abfd, asection * section, void * data)
- {
- #if HAVE_BFD_GET_SECTION_SIZE || HAVE_BFD_SECTION_SIZE || HAVE_BFD_GET_SECTION_SIZE_BEFORE_RELOC
- 	bfd_size_type size;

pkgs/extrae/default.nix

@@ -1,123 +0,0 @@
-{ stdenv
-, lib
-, fetchFromGitHub
-, boost
-, libdwarf
-, libelf
-, libxml2
-, libunwind
-, papi
-, binutils-unwrapped
-, libiberty
-, gfortran
-, xml2
-, which
-, libbfd
-, mpi ? null
-, cuda ? null
-, llvmPackages
-, autoreconfHook
-#, python3Packages
-, installShellFiles
-, symlinkJoin
-, enablePapi ? stdenv.hostPlatform == stdenv.buildPlatform # Disabled when cross-compiling
-}:
-
-let
-  libdwarfBundle = symlinkJoin {
-    name = "libdwarfBundle";
-    paths = [ libdwarf.dev libdwarf.lib libdwarf.out ];
-  };
-in
-
-stdenv.mkDerivation rec {
-  pname = "extrae";
-  version = "4.0.1";
-  src = fetchFromGitHub {
-    owner = "bsc-performance-tools";
-    repo = "extrae";
-    rev = "${version}";
-    sha256 = "SlMYxNQXJ0Xg90HmpnotUR3tEPVVBXhk1NtEBJwGBR4=";
-  };
-
-  patches = [
-    # FIXME: Waiting for German to merge this patch. Still not in master, merged
-    # on 2023-03-01 in devel branch (after 3 years), see:
-    # https://github.com/bsc-performance-tools/extrae/pull/45
-    ./use-command.patch
-    # https://github.com/bsc-performance-tools/extrae/issues/71
-    ./PTR.patch
-  ];
-
-  enableParallelBuilding = true;
-  hardeningDisable = [ "all" ];
-
-  nativeBuildInputs = [ installShellFiles ];
-
-  buildInputs = [
-    autoreconfHook
-    gfortran
-    libunwind
-    binutils-unwrapped
-    boost
-    boost.dev
-    libiberty
-    mpi
-    xml2
-    which
-    libxml2.dev
-    libbfd
-    #python3Packages.sphinx
-  ]
-  ++ lib.optional stdenv.cc.isClang llvmPackages.openmp;
-    
-  preConfigure = ''
-    configureFlagsArray=(
-      --enable-posix-clock
-      --with-binutils="${binutils-unwrapped} ${libiberty}"
-      --with-dwarf=${libdwarfBundle}
-      --with-elf=${libelf}
-      --with-boost=${boost.dev}
-      --enable-instrument-io
-      --enable-instrument-dynamic-memory
-      --without-memkind
-      --enable-merge-in-trace
-      --disable-online
-      --without-opencl
-      --enable-pebs-sampling
-      --enable-sampling
-      --with-unwind=${libunwind.dev}
-      --with-xml-prefix=${libxml2.dev}
-      ${lib.optionalString enablePapi "--with-papi=${papi}"}
-      ${if (mpi != null) then ''--with-mpi=${mpi}''
-        else ''--without-mpi''}
-      --without-dyninst)
-  '';
-
-  # Install the manuals only by hand, as we don't want to pull the complete
-  # LaTeX world
-
-  # FIXME: sphinx is broken
-  #postBuild = ''
-  #  make -C docs man
-  #'';
-  #
-  #postInstall = ''
-  #  installManPage docs/builds/man/*/*
-  #'';
-
-#  ++ (
-#    if (openmp)
-#    then [ "--enable-openmp" ]
-#    else []
-#  );
-
-  meta = {
-    homepage = "https://github.com/bsc-performance-tools/extrae";
-    description = "Instrumentation framework to generate execution traces of the most used parallel runtimes";
-    maintainers = [ ];
-    broken = true;
-    platforms = lib.platforms.linux;
-    license = lib.licenses.lgpl21Plus;
-  };
-}

pkgs/extrae/use-command.patch

@@ -1,24 +0,0 @@
-diff --git a/substitute b/substitute
-index d5615606..82ca91a5 100755
---- a/substitute
-+++ b/substitute
-@@ -16,7 +16,7 @@ UNAME=`uname`
- if [ "${UNAME}" = "Darwin" -o "${UNAME}" = "AIX" ] ; then
- 	TMPFILE=substitute-$$
- 	${SED} "s|${KEY}|${VALUE}|g" < ${FILE} >${TMPFILE}
--	/bin/mv -f ${TMPFILE} ${FILE}
-+	command mv -f ${TMPFILE} ${FILE}
- else
- 	${SED} "s|${KEY}|${VALUE}|g" -i ${FILE}
- fi
-diff --git a/substitute-all b/substitute-all
-index 48c6b76a..eda7a0f2 100755
---- a/substitute-all
-+++ b/substitute-all
-@@ -23,5 +23,5 @@ fi
- 
- echo "Applying modification in ${PATHTOCHANGE} - Key = ${KEY} for value = ${VALUE}"
- 
--/usr/bin/find ${PATHTOCHANGE} -type f -exec ${SCRIPT_LOCATION} "${SED}" "${KEY}" "${VALUE}" {} \;
-+command find ${PATHTOCHANGE} -type f -exec ${SCRIPT_LOCATION} "${SED}" "${KEY}" "${VALUE}" {} \;
- 

pkgs/fftw/default.nix

@@ -1,58 +0,0 @@
-{ fetchurl, stdenv, lib, llvmPackages ? null, precision ? "double", perl, mpi }:
-
-with lib;
-
-assert stdenv.cc.isClang -> llvmPackages != null;
-assert elem precision [ "single" "double" "long-double" "quad-precision" ];
-
-let
-  version = "3.3.8";
-  withDoc = stdenv.cc.isGNU;
-in
-
-stdenv.mkDerivation {
-  name = "fftw-${precision}-${version}";
-
-  src = fetchurl {
-    urls = [
-      "http://fftw.org/fftw-${version}.tar.gz"
-      "ftp://ftp.fftw.org/pub/fftw/fftw-${version}.tar.gz"
-    ];
-    sha256 = "00z3k8fq561wq2khssqg0kallk0504dzlx989x3vvicjdqpjc4v1";
-  };
-
-  outputs = [ "out" "dev" "man" ]
-    ++ optional withDoc "info"; # it's dev-doc only
-  outputBin = "dev"; # fftw-wisdom
-
-  buildInputs = [ mpi ]
-  ++ lib.optionals stdenv.cc.isClang [
-    # TODO: This may mismatch the LLVM version sin the stdenv, see #79818.
-    llvmPackages.openmp
-  ];
-
-  configureFlags =
-    [ "--enable-shared"
-      "--enable-threads"
-      "--enable-mpi"
-      "--disable-openmp"
-    ]
-    ++ optional (precision != "double") "--enable-${precision}"
-    # all x86_64 have sse2
-    # however, not all float sizes fit
-    ++ optional (stdenv.isx86_64 && (precision == "single" || precision == "double") )  "--enable-sse2"
-    # doc generation causes Fortran wrapper generation which hard-codes gcc
-    ++ optional (!withDoc) "--disable-doc";
-
-  enableParallelBuilding = true;
-
-  checkInputs = [ perl ];
-
-  meta = with lib; {
-    description = "Fastest Fourier Transform in the West library";
-    homepage = "http://www.fftw.org/";
-    license = licenses.gpl2Plus;
-    maintainers = [ maintainers.spwhitt ];
-    platforms = platforms.unix;
-  };
-}

pkgs/gpi-2/default.nix

@@ -1,75 +0,0 @@
-{
-  stdenv
-, lib
-, fetchurl
-, symlinkJoin
-, slurm
-, rdma-core
-, autoconf
-, automake
-, libtool
-, mpi
-, gfortran
-}:
-
-let
-  rdma-core-all = symlinkJoin {
-    name ="rdma-core-all";
-    paths = [ rdma-core.dev rdma-core.out ];
-  };
-  mpiAll = symlinkJoin {
-    name = "mpi-all";
-    paths = [ mpi.all ];
-  };
-in
-
-stdenv.mkDerivation rec {
-  pname = "GPI-2";
-  version = "tagaspi-2021.11";
-
-  src = fetchurl {
-    url = "https://pm.bsc.es/gitlab/interoperability/extern/GPI-2/-/archive/${version}/GPI-2-${version}.tar.gz";
-    hash = "sha256-eY2wpyTpnOXRoAcYoAP82Jq9Q7p5WwDpMj+f1vEX5zw=";
-  };
-
-  enableParallelBuilding = true;
-
-  patches = [ ./rdma-core.patch ./max-mem.patch ];
-
-  preConfigure = ''
-    patchShebangs autogen.sh
-    ./autogen.sh
-  '';
-
-  configureFlags = [
-    "--with-infiniband=${rdma-core-all}"
-    "--with-mpi=yes" # fixes mpi detection when cross-compiling
-    "--with-slurm"
-    "CFLAGS=-fPIC"
-    "CXXFLAGS=-fPIC"
-  ];
-
-  nativeBuildInputs = [
-    autoconf
-    automake
-    gfortran
-    libtool
-  ];
-
-  buildInputs = [
-    slurm
-    mpiAll
-    rdma-core-all
-  ];
-
-  hardeningDisable = [ "all" ];
-
-  meta = {
-    homepage = "https://pm.bsc.es/gitlab/interoperability/extern/GPI-2";
-    description = "GPI-2 extended for supporting Task-Aware GASPI (TAGASPI) library";
-    maintainers = with lib.maintainers.bsc; [ rarias ];
-    platforms = lib.platforms.linux;
-    license = lib.licenses.gpl3Plus;
-    cross = false; # infiniband detection does not work
-  };
-}

pkgs/gpi-2/max-mem.patch

@@ -1,10 +0,0 @@
---- a/tests/tests/segments/max_mem.c	2025-09-12 13:30:53.449353591 +0200
-+++ b/tests/tests/segments/max_mem.c	2025-09-12 13:33:49.750352401 +0200
-@@ -1,5 +1,7 @@
- #include <test_utils.h>
- 
-+gaspi_size_t gaspi_get_system_mem (void);
-+
- /* Test allocates 45% of system memory and creates a segment that
-    large or if several ranks per node exist, divided among that
-    number */

pkgs/gpi-2/rdma-core.patch

@@ -1,12 +0,0 @@
---- a/src/devices/ib/GPI2_IB.h	2025-09-12 13:25:31.564181121 +0200
-+++ b/src/devices/ib/GPI2_IB.h	2025-09-12 13:24:49.105422150 +0200
-@@ -26,6 +26,9 @@ along with GPI-2. If not, see <http://ww
- 
- #include "GPI2_Dev.h"
- 
-+/* Missing prototype as driver.h is now private */
-+int ibv_read_sysfs_file(const char *dir, const char *file, char *buf, size_t size);
-+
- #define GASPI_GID_INDEX   (0)
- #define PORT_LINK_UP      (5)
- #define MAX_INLINE_BYTES  (128)

pkgs/groff/0001-Fix-cross-compilation-by-looking-for-ar.patch

@@ -1,46 +0,0 @@
-From 1454525f70b43a6957b7c9e1870e997368787da3 Mon Sep 17 00:00:00 2001
-From: Samuel Dionne-Riel <samuel@dionne-riel.com>
-Date: Fri, 8 Nov 2019 21:59:21 -0500
-Subject: [PATCH] Fix cross-compilation by looking for `ar`.
-
----
- Makefile.am  | 2 +-
- configure.ac | 2 ++
- 2 files changed, 3 insertions(+), 1 deletion(-)
-
-diff --git a/Makefile.am b/Makefile.am
-index d18c49b8..b1b53338 100644
---- a/Makefile.am
-+++ b/Makefile.am
-@@ -494,7 +494,7 @@ CCC=@CXX@
- # INSTALL_INFO
- # LN_S
- 
--AR=ar
-+AR=@AR@
- ETAGS=etags
- ETAGSFLAGS=
- # Flag that tells etags to assume C++.
-diff --git a/configure.ac b/configure.ac
-index 28e75f17..2449b9f5 100644
---- a/configure.ac
-+++ b/configure.ac
-@@ -37,6 +37,7 @@ AC_CONFIG_AUX_DIR([build-aux])
- 
- AC_CONFIG_HEADERS([src/include/config.h:src/include/config.hin])
- AC_CONFIG_SRCDIR([src/roff/groff/groff.cpp])
-+AC_CONFIG_MACRO_DIR([m4])
- 
- AC_USE_SYSTEM_EXTENSIONS
- 
-@@ -72,6 +73,7 @@ GROFF_DOC_CHECK
- GROFF_MAKEINFO
- GROFF_TEXI2DVI
- AC_PROG_RANLIB
-+AC_CHECK_TOOL([AR], [ar], [ar])
- GROFF_INSTALL_SH
- GROFF_INSTALL_INFO
- AC_PROG_INSTALL
--- 
-2.23.0
-

pkgs/groff/default.nix

@@ -1,127 +0,0 @@
-{ stdenv, lib, fetchurl, perl
-, ghostscript #for postscript and html output
-, psutils, netpbm #for html output
-, buildPackages
-, autoreconfHook
-, pkg-config
-, texinfo
-}:
-
-stdenv.mkDerivation rec {
-  pname = "groff";
-  version = "1.22.4";
-
-  src = fetchurl {
-    url = "mirror://gnu/groff/${pname}-${version}.tar.gz";
-    sha256 = "14q2mldnr1vx0l9lqp9v2f6iww24gj28iyh4j2211hyynx67p3p7";
-  };
-
-  enableParallelBuilding = false;
-
-  patches = [
-    ./0001-Fix-cross-compilation-by-looking-for-ar.patch
-  ];
-
-  postPatch = lib.optionalString (psutils != null) ''
-    substituteInPlace src/preproc/html/pre-html.cpp \
-      --replace "psselect" "${psutils}/bin/psselect"
-  '' + lib.optionalString (netpbm != null) ''
-    substituteInPlace src/preproc/html/pre-html.cpp \
-      --replace "pnmcut" "${lib.getBin netpbm}/bin/pnmcut" \
-      --replace "pnmcrop" "${lib.getBin netpbm}/bin/pnmcrop" \
-      --replace "pnmtopng" "${lib.getBin netpbm}/bin/pnmtopng"
-    substituteInPlace tmac/www.tmac.in \
-      --replace "pnmcrop" "${lib.getBin netpbm}/bin/pnmcrop" \
-      --replace "pngtopnm" "${lib.getBin netpbm}/bin/pngtopnm" \
-      --replace "@PNMTOPS_NOSETPAGE@" "${lib.getBin netpbm}/bin/pnmtops -nosetpage"
-  '';
-
-  buildInputs = [ ghostscript psutils netpbm perl ];
-  nativeBuildInputs = [ autoreconfHook pkg-config texinfo ];
-
-  # Builds running without a chroot environment may detect the presence
-  # of /usr/X11 in the host system, leading to an impure build of the
-  # package. To avoid this issue, X11 support is explicitly disabled.
-  # Note: If we ever want to *enable* X11 support, then we'll probably
-  # have to pass "--with-appresdir", too.
-  configureFlags = [
-    "--without-x"
-  ] ++ lib.optionals (ghostscript != null) [
-    "--with-gs=${ghostscript}/bin/gs"
-  ] ++ lib.optionals (stdenv.buildPlatform != stdenv.hostPlatform) [
-    "ac_cv_path_PERL=${buildPackages.perl}/bin/perl"
-  ];
-
-  makeFlags = lib.optionals (stdenv.buildPlatform != stdenv.hostPlatform) [
-    # Trick to get the build system find the proper 'native' groff
-    # http://www.mail-archive.com/bug-groff@gnu.org/msg01335.html
-    "GROFF_BIN_PATH=${buildPackages.groff}/bin"
-    "GROFFBIN=${buildPackages.groff}/bin/groff"
-  ];
-
-  doCheck = true;
-
-  postInstall = ''
-    for f in 'man.local' 'mdoc.local'; do
-        cat '${./site.tmac}' >>"$out/share/groff/site-tmac/$f"
-    done
-
-    moveToOutput bin/gropdf $out
-    moveToOutput bin/pdfmom $out
-    moveToOutput bin/roff2text $out
-    moveToOutput bin/roff2pdf $out
-    moveToOutput bin/roff2ps $out
-    moveToOutput bin/roff2dvi $out
-    moveToOutput bin/roff2ps $out
-    moveToOutput bin/roff2html $out
-    moveToOutput bin/glilypond $out
-    moveToOutput bin/mmroff $out
-    moveToOutput bin/roff2x $out
-    moveToOutput bin/afmtodit $out
-    moveToOutput bin/gperl $out
-    moveToOutput bin/chem $out
-    moveToOutput share/groff/${version}/font/devpdf $out
-
-    # idk if this is needed, but Fedora does it
-    moveToOutput share/groff/${version}/tmac/pdf.tmac $out
-
-    moveToOutput bin/gpinyin $out
-    moveToOutput lib/groff/gpinyin $out
-    substituteInPlace $out/bin/gpinyin \
-      --replace $out/lib/groff/gpinyin $out/lib/groff/gpinyin
-
-    moveToOutput bin/groffer $out
-    moveToOutput lib/groff/groffer $out
-    substituteInPlace $out/bin/groffer \
-      --replace $out/lib/groff/groffer $out/lib/groff/groffer
-
-    moveToOutput bin/grog $out
-    moveToOutput lib/groff/grog $out
-    substituteInPlace $out/bin/grog \
-      --replace $out/lib/groff/grog $out/lib/groff/grog
-
-  '' + lib.optionalString (stdenv.buildPlatform != stdenv.hostPlatform) ''
-    find $out/ -type f -print0 | xargs --null sed -i 's|${buildPackages.perl}|${perl}|'
-  '';
-
-  meta = with lib; {
-    homepage = "https://www.gnu.org/software/groff/";
-    description = "GNU Troff, a typesetting package that reads plain text and produces formatted output";
-    license = licenses.gpl3Plus;
-    platforms = platforms.all;
-    maintainers = with maintainers; [ pSub ];
-
-    longDescription = ''
-      groff is the GNU implementation of troff, a document formatting
-      system.  Included in this release are implementations of troff,
-      pic, eqn, tbl, grn, refer, -man, -mdoc, -mom, and -ms macros,
-      and drivers for PostScript, TeX dvi format, HP LaserJet 4
-      printers, Canon CAPSL printers, HTML and XHTML format (beta
-      status), and typewriter-like devices.  Also included is a
-      modified version of the Berkeley -me macros, the enhanced
-      version gxditview of the X11 xditview previewer, and an
-      implementation of the -mm macros.
-    '';
-
-  };
-}

pkgs/groff/site.tmac

@@ -1,16 +0,0 @@
-.
-.if n \{\
-.  \" Character translations for non-keyboard
-.  \" characters - to make them searchable
-.  if '\*[.T]'utf8' \{\
-.    char \- \N'45'
-.    char - \N'45'
-.    char ' \N'39'
-.    char \' \N'39'
-.  \}
-.
-.  \" Shut off SGR by default (groff colors)
-.  \" Require GROFF_SGR envvar defined to turn it on
-.  if '\V[GROFF_SGR]'' \
-.    output x X tty: sgr 0
-.\}

pkgs/hwloc/1.11.6/default.nix

@@ -1,70 +0,0 @@
-{ stdenv, lib, fetchurl, pkg-config, expat, ncurses
-, pciutils, numactl }:
-
-with lib;
-
-stdenv.mkDerivation rec {
-  name = "hwloc-1.11.6";
-
-  src = fetchurl {
-    url = "http://www.open-mpi.org/software/hwloc/v1.11/downloads/${name}.tar.bz2";
-    sha256 = "1yl7dm2qplwmnidd712zy12qfvxk28k8ccs694n42ybwdjwzg1bn";
-  };
-
-  nativeBuildInputs = [ pkg-config ];
-
-  # Filter out `null' inputs.  This allows users to `.override' the
-  # derivation and set optional dependencies to `null'.
-  buildInputs = filter (x: x != null)
-   ([ expat ncurses ]
-     ++  (optionals stdenv.isLinux [ numactl ]));
-
-  propagatedBuildInputs =
-    # Since `libpci' appears in `hwloc.pc', it must be propagated.
-    optional stdenv.isLinux pciutils;
-
-  enableParallelBuilding = true;
-
-  postInstall =
-    optionalString (stdenv.isLinux && numactl != null)
-      '' if [ -d "${numactl}/lib64" ]
-         then
-             numalibdir="${numactl}/lib64"
-         else
-             numalibdir="${numactl}/lib"
-             test -d "$numalibdir"
-         fi
-
-         sed -i "$out/lib/libhwloc.la" \
-             -e "s|-lnuma|-L$numalibdir -lnuma|g"
-      '';
-
-  # Checks disabled because they're impure (hardware dependent) and
-  # fail on some build machines.
-  doCheck = false;
-
-  meta = {
-    description = "Portable abstraction of hierarchical architectures for high-performance computing";
-    longDescription = ''
-       hwloc provides a portable abstraction (across OS,
-       versions, architectures, ...) of the hierarchical topology of
-       modern architectures, including NUMA memory nodes, sockets,
-       shared caches, cores and simultaneous multithreading.  It also
-       gathers various attributes such as cache and memory
-       information.  It primarily aims at helping high-performance
-       computing applications with gathering information about the
-       hardware so as to exploit it accordingly and efficiently.
-
-       hwloc may display the topology in multiple convenient
-       formats.  It also offers a powerful programming interface to
-       gather information about the hardware, bind processes, and much
-       more.
-    '';
-
-    # http://www.open-mpi.org/projects/hwloc/license.php
-    license = licenses.bsd3;
-    homepage = http://www.open-mpi.org/projects/hwloc/;
-    maintainers = [ ];
-    platforms = platforms.all;
-  };
-}

pkgs/intel-compiler/default.nix

@@ -1,40 +0,0 @@
-{
-  stdenv
-, gcc
-, iccUnwrapped
-, wrapCCWith
-, intelLicense
-}:
-
-let
-  targetConfig = stdenv.targetPlatform.config;
-  inherit gcc;
-in wrapCCWith rec {
-  cc = iccUnwrapped;
-  extraBuildCommands = ''
-    echo "-B${gcc.cc}/lib/gcc/${targetConfig}/${gcc.version}" >> $out/nix-support/cc-cflags
-    echo "-isystem ${iccUnwrapped}/include" >> $out/nix-support/cc-cflags
-    echo "-isystem ${iccUnwrapped}/include/intel64" >> $out/nix-support/cc-cflags
-    echo "-L${gcc.cc}/lib/gcc/${targetConfig}/${gcc.version}" >> $out/nix-support/cc-ldflags
-    echo "-L${gcc.cc.lib}/lib" >> $out/nix-support/cc-ldflags
-
-    cat "${iccUnwrapped}/nix-support/propagated-build-inputs" >> \
-      $out/nix-support/propagated-build-inputs
-
-    echo "export INTEL_LICENSE_FILE=${intelLicense}" \
-      >> $out/nix-support/setup-hook
-
-    # Create the wrappers for icc and icpc
-    if [ -e $ccPath/icc ]; then
-      wrap icc  $wrapper $ccPath/icc
-    fi
-
-    if [ -e $ccPath/icpc ]; then
-      wrap icpc $wrapper $ccPath/icpc
-    fi
-
-    if [ -e $ccPath/ifort ]; then
-      wrap ifort $wrapper $ccPath/ifort
-    fi
-  '';
-}

pkgs/intel-compiler/icc2020.nix

@@ -1,71 +0,0 @@
-{ stdenv
-, lib
-, fetchurl
-, rpmextract
-, autoPatchelfHook
-, gcc
-, intel-mpi
-}:
-
-stdenv.mkDerivation rec {
-  version = "${year}.${v_a}.${v_b}";
-  name = "intel-compiler-${version}";
-
-  passthru = {
-    CC = "icc";
-    CXX = "icpc";
-  };
-
-  # From Arch Linux PKGBUILD
-  dir_nr="17114";
-  year="2020";
-  v_a="4";
-  v_b="304";
-  update="4";
-  composer_xe_dir="compilers_and_libraries_${year}.${v_a}.${v_b}";
-  tgz="parallel_studio_xe_2020_update${update}_professional_edition.tgz";
-
-  src = fetchurl {
-    url = "https://registrationcenter-download.intel.com/akdlm/irc_nas/tec/${dir_nr}/${tgz}";
-    sha256 = "1rn9kk5bjj0jfv853b09dxrx7kzvv8dlyzw3hl9ijx9mqr09lrzr";
-  };
-
-  buildInputs = [
-    rpmextract
-    autoPatchelfHook
-    gcc.cc.lib
-    gcc
-    intel-mpi
-  ];
-
-  # The gcc package is required for building other programs
-  propagatedBuildInputs = [ gcc ];
-
-  installPhase = ''
-    pwd
-    ls -l rpm
-    rpmextract rpm/intel-icc-*.rpm
-    rpmextract rpm/intel-comp-*.rpm
-    rpmextract rpm/intel-c-comp-*.rpm
-    rpmextract rpm/intel-openmp*.rpm
-    rpmextract rpm/intel-ifort*.rpm
-
-    mkdir -p $out/{bin,lib,include}
-
-    pushd ./opt/intel/${composer_xe_dir}/linux/
-      cp -a bin/intel64/* $out/bin/
-      cp -a compiler/include/* $out/include/
-      cp -a compiler/lib/intel64_lin/* $out/lib/
-      ln -s lib $out/lib_lin
-      rm $out/lib/*.dbg
-    popd
-  '';
-
-  meta = {
-    homepage = "https://www.intel.com/content/www/us/en/developer/tools/overview.html";
-    description = "Intel compiler";
-    maintainers = with lib.maintainers.bsc; [ rarias ];
-    platforms = lib.platforms.linux;
-    license = lib.licenses.unfree;
-  };
-}

pkgs/intel-compiler/icc2021.nix

@@ -1,156 +0,0 @@
-{ stdenv
-, lib
-, fetchurl
-, dpkg
-, rsync
-, libffi
-, libelf
-, libxml2
-, hwloc
-, autoPatchelfHook
-}:
-
-with lib;
-
-let
-
-  getsrc = url: sha256: fetchurl { inherit url sha256; };
-
-  version = "2021.2.0";
-  _debpkgrel = "610";
-  tbbrel = "357";
-
-  # Shorhands
-  main     = "intel-oneapi-dpcpp-cpp";
-  compiler = "intel-oneapi-compiler-dpcpp-cpp";
-  shared   = "intel-oneapi-compiler-shared";
-  openmp   = "intel-oneapi-openmp";
-  tbb      = "intel-oneapi-tbb";
-
-  # From Arch Linux PKGBUILD:
-  # https://aur.archlinux.org/cgit/aur.git/tree/PKGBUILD?h=intel-oneapi-compiler-dpcpp-cpp
-  debs = [
-    # From intel-oneapi-compiler-dpcpp-cpp
-    "${main}-${version}-${version}-${_debpkgrel}_amd64.deb"
-    "${compiler}-common-${version}-${version}-${_debpkgrel}_all.deb"
-    "${compiler}-runtime-${version}-${version}-${_debpkgrel}_amd64.deb"
-
-    # From intel-oneapi-compiler-shared
-    "${shared}-${version}-${version}-${_debpkgrel}_amd64.deb"
-    "${shared}-runtime-${version}-${version}-${_debpkgrel}_amd64.deb"
-    "${shared}-common-${version}-${version}-${_debpkgrel}_all.deb"
-    "${shared}-common-runtime-${version}-${version}-${_debpkgrel}_all.deb"
-    "${compiler}-classic-fortran-shared-runtime-${version}-${version}-${_debpkgrel}_amd64.deb"
-
-    # From intel-oneapi-openmp
-    "${openmp}-${version}-${version}-${_debpkgrel}_amd64.deb"
-    "${openmp}-common-${version}-${version}-${_debpkgrel}_all.deb"
-
-    # From intel-oneapi-tbb
-    "${tbb}-${version}-${version}-${tbbrel}_amd64.deb"
-    "${tbb}-devel-${version}-${version}-${tbbrel}_amd64.deb"
-    "${tbb}-common-${version}-${version}-${tbbrel}_all.deb"
-    "${tbb}-common-devel-${version}-${version}-${tbbrel}_all.deb"
-  ];
-
-  apthost = "https://apt.repos.intel.com/oneapi/pool/main/";
-  urls = map (x: apthost + x) debs;
-
-  sums = [
-    # From intel-oneapi-compiler-dpcpp-cpp
-    "0pwsfzkazr9yf6v6lgwb3p2in6ch3rlcc9qcfarkyqn052p760kk"
-    "0vzsanldhs4ym4gsfn0zjqm03x53ma1zjkj24hpkhpsvlr2r069w"
-    "0nx62v6g0wl70lqdh7sh7gfgxbynhrrips9gpj9if60ngz6fm21m"
-
-    # From intel-oneapi-compiler-shared
-    "1al80pcy2r3q2r2pm04sva7rd3z6y287mkdv5jq4p5bfd8yi14d4"
-    "07rp0cjmbgj48wly9dm6ibxzbsanmgrsjjqr7mx688ms6qbhv314"
-    "1pf4xckyyhssjknhs6hwampjsz2qjlg81jw2fc441zaccwf25yf3"
-    "0hk0x4wq60g9wnn9j051v25zcmbasjdzp34xfvrihmcvyws0s69g"
-    "0dhbw8kshw4abqc9zf891z5ic0x13x3kvhk56nrqkqgcfwps9w8a"
-
-    # From intel-oneapi-openmp
-    "1wqy2sjwlqdh72zhfrxl9pm106hjzfdbbm98cxigbg20fb5lbv5a"
-    "19nbqypvqcf8c3mwriaqrmp5igjpwvwrb9mq2fxa5i40w7bhlxjl"
-
-    # From intel-oneapi-tbb
-    "1dpii3g861kimky0x7dqcj6hg7zb6i5kw1wgwrxdc5yxhi5slbm9"
-    "0bl1flm6w0w9nzrh34ig4p9qz2gbdgw9q14as2pwp8flicd8p899"
-    "0w3kip6q713v1xlfc10ai4v15cbwmbqrv8r1f5x6pfqdbb0bpmbv"
-    "0v95nmddyi0mjjdvm07w9fm3vq4a0wkx7zxlyzn2f4xg38qc5j73"
-  ];
-
-in
-  stdenv.mkDerivation {
-    inherit version;
-    name = "intel-compiler-${version}";
-
-    passthru = {
-      CC = "icc";
-      CXX = "icpc";
-    };
-
-    srcs = zipListsWith getsrc urls sums;
-
-    buildInputs = [
-      dpkg
-      rsync
-      libffi
-      libelf
-      libxml2
-      hwloc
-      autoPatchelfHook
-      stdenv.cc.cc.lib
-    ];
-
-    dontBuild = true;
-    dontStrip = true;
-
-    # The gcc package is required for building other programs
-    #propagatedBuildInputs = [ gcc ];
-
-    unpackCmd = ''
-      dpkg -x $curSrc .
-    '';
-
-    # FIXME: Some dependencies are missing
-    autoPatchelfIgnoreMissingDeps = true;
-    #autoPatchelfIgnoreMissingDeps = [ "*" ];
-
-    # Compiler
-    installPhase = ''
-      mkdir -p $out/{bin,lib,include}
-
-      pushd intel/oneapi/compiler/${version}/linux
-        # Binaries
-        rsync -a bin/ $out/bin/
-        rsync -a bin/intel64/ $out/bin/
-
-        # Libraries
-        rsync -a --exclude=oclfpga lib/ $out/lib/
-        rsync -a compiler/lib/intel64_lin/ $out/lib/
-
-        # Headers
-        rsync -a include/ $out/include/
-        rsync -a compiler/include/ $out/include/
-      popd
-
-      # TBB
-      pushd intel/oneapi/tbb/${version}
-        # Libraries
-        rsync -a lib/intel64/gcc4.8/ $out/lib/
-
-        # Headers
-        rsync -a include/ $out/include/
-      popd
-    '';
-
-    meta = {
-      homepage = "https://www.intel.com/content/www/us/en/developer/tools/overview.html";
-      description = "Intel compiler";
-      maintainers = with lib.maintainers.bsc; [ rarias ];
-      platforms = lib.platforms.linux;
-      license = lib.licenses.unfree;
-    };
-
-  }

pkgs/intel-compiler/license.nix

@@ -1,39 +0,0 @@
-{ stdenv
-, requireFile
-}:
-
-stdenv.mkDerivation rec {
-  name = "intel-compiler-license";
-  version = "2019.7.217";
-
-  src = requireFile {
-    name = "license.lic";
-    sha256 = "0rgmsqkhpqcfny8j7msa4sgz3prhh248ylh69gjh12dkra77prsj";
-    message = ''
-      The Intel Compiler requires a license. You can get one (free of charge) if
-      you meet the requeriments at the website:
-
-        https://software.intel.com/content/www/us/en/develop/articles/qualify-for-free-software.html#opensourcecontributor
-
-      Or you can use your own license. Add it to the store with:
-
-        $ nix-store --add-fixed sha256 license.lic
-        /nix/store/2p9v0nvsl3scshjx348z6j32rh7ac0db-license.lic
-
-      Notice that the name must match exactly "license.lic".
-
-      Then update the hash in the bsc/intel-compiler/license.nix file using the
-      nix-hash command with:
-
-        $ nix-hash --type sha256 --base32 --flat /nix/store/2p9v0nvsl3scshjx348z6j32rh7ac0db-license.lic
-        06g2xgm1lch6zqfkhb768wacdx46kf61mfvj5wfpyssw0anr0x9q
-    '';
-  };
-
-  dontUnpack = true;
-
-  installPhase = ''
-    mkdir -p $out
-    cp $src $out/
-  '';
-}

pkgs/intel-compiler/wrapper2021.nix

@@ -1,29 +0,0 @@
-{
-  stdenv
-, gcc
-, iccUnwrapped
-, wrapCCWith
-}:
-
-let
-  targetConfig = stdenv.targetPlatform.config;
-  inherit gcc;
-in wrapCCWith rec {
-  cc = iccUnwrapped;
-  extraBuildCommands = ''
-    echo "-B${gcc.cc}/lib/gcc/${targetConfig}/${gcc.version}" >> $out/nix-support/cc-cflags
-    echo "-isystem ${iccUnwrapped}/include" >> $out/nix-support/cc-cflags
-    echo "-isystem ${iccUnwrapped}/include/icc" >> $out/nix-support/cc-cflags
-    echo "-isystem ${gcc.cc}/include/c++/${gcc.version}" >> $out/nix-support/cc-cflags
-    echo "-isystem ${gcc.cc}/include/c++/${gcc.version}/${targetConfig}" >> $out/nix-support/cc-cflags
-
-    echo "-L${iccUnwrapped}/lib" >> $out/nix-support/cc-ldflags
-    echo "-L${gcc.cc}/lib/gcc/${targetConfig}/${gcc.version}" >> $out/nix-support/cc-ldflags
-    echo "-L${gcc.cc.lib}/lib" >> $out/nix-support/cc-ldflags
-
-    # Create the wrappers for icx*
-    wrap lld  $wrapper $ccPath/lld
-    wrap icx  $wrapper $ccPath/icx
-    wrap icpx  $wrapper $ccPath/icpx
-  '';
-}

pkgs/intel-mpi/default.nix

@@ -1,113 +0,0 @@
-{ stdenv
-, lib
-, rpmextract
-, gcc
-, zlib
-, ucx
-, numactl
-, rdma-core
-, libpsm2
-, patchelf
-, autoPatchelfHook
-, enableDebug ? false
-# The _mt version seems to cause seg-faults and deadlocks with the libpsm2
-# provider library with programs that call the MPI library without any locking
-# mechanism. See https://pm.bsc.es/gitlab/rarias/bscpkgs/-/issues/28. By
-# default, we use the non-mt variant, which provides a big lock. If you want to
-# use it, take a look at the I_MPI_THREAD_SPLIT env-var as well.
-, enableMt ? false
-}:
-
-let
-
-  lib_variant = (if enableDebug then "debug" else "release");
-
-  # See https://software.intel.com/content/www/us/en/develop/documentation/mpi-developer-reference-linux/top/environment-variable-reference/other-environment-variables.html
-  lib_mt = (if enableMt then "_mt" else "");
-  lib_name = "${lib_variant}${lib_mt}";
-
-in
-
-stdenv.mkDerivation rec {
-  name = "intel-mpi-${version}";
-  version = "2019.10.317";
-  dir_nr = "17534";
-
-  src = builtins.fetchTarball {
-    url = "http://registrationcenter-download.intel.com/akdlm/irc_nas/tec/${dir_nr}/l_mpi_${version}.tgz";
-    sha256 = "00nimgqywr20dv1ns5kg4r8539gvharn0xfj48i7mhbg8kwf8s08";
-  };
-
-  buildInputs = [
-    rpmextract
-    autoPatchelfHook
-    gcc.cc.lib
-    zlib
-    ucx
-    numactl
-    rdma-core
-    libpsm2
-    patchelf
-  ];
-
-  postUnpack = ''
-    pushd $sourceRoot
-      rpmextract rpm/intel-mpi-*.rpm
-      # Predictable name
-      mv opt/intel/compilers_and_libraries_* opt/intel/compilers_and_libraries
-    popd
-    sourceRoot="$sourceRoot/opt/intel/compilers_and_libraries/linux/mpi/intel64"
-  '';
-
-  patches = [
-    ./mpicc.patch
-    ./mpicxx.patch
-  ];
-
-  postPatch = ''
-    for i in bin/mpi* ; do
-      echo "Fixing paths in $i"
-      sed -i "s:I_MPI_SUBSTITUTE_INSTALLDIR:$out:g" "$i"
-    done     
-  '';
-
-  dontBuild = true;
-
-  installPhase = ''
-    mkdir -p $out
-    mv etc $out
-    mv bin $out 
-    mv include $out 
-    mkdir $out/lib
-    cp -a lib/lib* $out/lib
-    cp -a lib/${lib_name}/lib* $out/lib
-    cp -a libfabric/lib/* $out/lib
-    cp -a libfabric/lib/prov/* $out/lib
-    cp -a libfabric/bin/* $out/bin
-    ln -s . $out/intel64
-    rm $out/lib/libmpi.dbg
-
-    # Fixup Intel PSM2 library missing (now located at PSMX2)
-    ln -s $out/lib/libpsmx2-fi.so $out/lib/libpsm2-fi.so
-  '';
-
-  dontAutoPatchelf = true;
-
-  # The rpath of libfabric.so bundled with Intel MPI is patched to include the
-  # rdma-core lib path, as is required for dlopen to find the rdma components.
-  # TODO: Try the upstream libfabric library with rdma support, so we can avoid
-  # this hack.
-  postFixup = ''
-    autoPatchelf -- $out
-    patchelf --set-rpath "$out/lib:${rdma-core}/lib:${libpsm2}/lib" $out/lib/libfabric.so
-    echo "Patched RPATH in libfabric.so to: $(patchelf --print-rpath $out/lib/libfabric.so)"
-  '';
-
-  meta = {
-    homepage = "https://www.intel.com/content/www/us/en/developer/tools/overview.html";
-    description = "Intel MPI";
-    maintainers = with lib.maintainers.bsc; [ rarias ];
-    platforms = lib.platforms.linux;
-    license = lib.licenses.unfree;
-  };
-}

pkgs/intel-mpi/mpicc.patch

@@ -1,20 +0,0 @@
---- a/bin/mpicc	2021-02-04 18:15:11.233632360 +0100
-+++ b/bin/mpicc	2021-02-05 09:33:49.493598479 +0100
-@@ -50,7 +50,7 @@
- if [ x"$opt_args" == x"" ]; then
-     case "${compiler_short_name}" in
-     icc|icx)    "$dir"/mpiicc -cc=$compiler_name "$@" ;;
--    cc|*gcc*|clang*) "$dir"/mpigcc -cc=$compiler_name "$@" ;;
-+    cc|*gcc*|clang*|mcc|echo) "$dir"/mpigcc -cc=$compiler_name "$@" ;;
-     mpicc)  "$dir"/mpigcc "$@" ;;    
-     *)  
-             echo "Error: unsupported compiler name '$compiler_name'."
-@@ -60,7 +60,7 @@
- else
-     case "${compiler_short_name}" in
-     icc|icx)    "$dir"/mpiicc -cc=$compiler_name "$@" $opt_args ;;
--    cc|*gcc*|clang*) "$dir"/mpigcc -cc=$compiler_name "$@" $opt_args ;;
-+    cc|*gcc*|clang*|mcc|echo) "$dir"/mpigcc -cc=$compiler_name "$@" $opt_args ;;
-     mpicc)  "$dir"/mpigcc "$@" $opt_args ;;    
-     *)  
-             echo "Error: unsupported compiler name '$compiler_name'."

pkgs/intel-mpi/mpicxx.patch

@@ -1,20 +0,0 @@
---- a/bin/mpicxx	2021-02-04 18:15:11.233632360 +0100
-+++ b/bin/mpicxx	2021-02-05 09:36:21.396922569 +0100
-@@ -50,7 +50,7 @@
- if [ x"$opt_args" == x"" ]; then
-     case "${compiler_short_name}" in
-     icc|icpc|dpcpp)   "$dir"/mpiicpc -cxx=$compiler_name "$@" ;;
--    *g++*)        "$dir"/mpigxx -cxx=$compiler_name "$@" ;;
-+    *g++*|clang*++|mcxx|echo) "$dir"/mpigxx -cxx=$compiler_name "$@" ;;
-     mpicxx)     "$dir"/mpigxx "$@" ;;
-     *)  
-             echo "Error: unsupported compiler name '$compiler_name'."
-@@ -60,7 +60,7 @@
- else
-     case "${compiler_short_name}" in
-     icc|icpc|dpcpp)   "$dir"/mpiicpc -cxx=$compiler_name "$@" $opt_args ;;
--    *g++*)        "$dir"/mpigxx -cxx=$compiler_name "$@" $opt_args ;;
-+    *g++*|clang*++|mcxx|echo) "$dir"/mpigxx -cxx=$compiler_name "$@" $opt_args ;;
-     mpicxx)     "$dir"/mpigxx "$@" $opt_args ;;
-     *)  
-             echo "Error: unsupported compiler name '$compiler_name'."

pkgs/intel-oneapi/2023.nix

@@ -1,511 +0,0 @@
-{ stdenv
-, fetchurl
-, lib
-, dpkg
-, rsync
-, libffi_3_3
-, libelf
-, libxml2
-, hwloc
-, zlib
-, autoPatchelfHook
-, libfabric
-, gcc13
-, wrapCCWith
-}:
-
-# The distribution of intel packages is a mess. We are doing the installation
-# based on the .deb metapackage "intel-hpckit", and follow de dependencies,
-# which have mismatching versions.
-
-# Bruno Bzeznik (bzizou) went through the madness of using their .sh installer,
-# pulling all the X dependencies here:
-# https://github.com/Gricad/nur-packages/blob/4b67c8ad0ce1baa1d2f53ba41ae5bca8e00a9a63/pkgs/intel/oneapi.nix
-
-# But this is an attempt to install the packages from the APT repo
-
-let
-
-  meta = {
-    description = "Intel oneapi hpckit package component";
-    homepage = "https://www.intel.com/content/www/us/en/developer/tools/oneapi/hpc-toolkit-download.html";
-    license = lib.licenses.unfree;
-    maintainers = with lib.maintainers.bsc; [ abonerib ];
-  };
-
-  gcc = gcc13;
-
-  v = {
-    hpckit   = "2023.1.0";
-    compiler = "2023.1.0";
-    tbb      = "2021.9.0";
-    mpi      = "2021.9.0";
-  };
-
-  aptPackageIndex = stdenv.mkDerivation {
-    name = "intel-oneapi-packages";
-    srcs = [
-      # Run update.sh to update the package lists
-      ./amd64-packages ./all-packages
-    ];
-    phases = [ "installPhase" ];
-    installPhase = ''
-      awk -F': ' '\
-        BEGIN   { print "[ {" } \
-        NR>1 && /^Package: / { print "} {"; } \
-        /: /    { printf "%s = \"%s\";\n", $1, $2 } \
-        END     { print "} ]" }' $srcs > $out
-    '';
-  };
-
-  aptPackages = import aptPackageIndex;
-
-  apthost = "https://apt.repos.intel.com/oneapi/";
-
-  getSum = pkgList: name:
-  let
-    matches = lib.filter (x: name == x.Package) pkgList;
-    #n = lib.length matches;
-    #match = builtins.trace (name + " -- ${builtins.toString n}") (lib.elemAt matches 0);
-    match = lib.elemAt matches 0;
-  in
-    match.SHA256;
-
-  getUrl = pkgList: name:
-  let
-    matches = lib.filter (x: name == x.Package) pkgList;
-    #match = assert lib.length matches == 1; lib.elemAt matches 0;
-    n = lib.length matches;
-    match =
-      #builtins.trace (name + " -- n=${builtins.toString n}")
-      (lib.elemAt matches 0);
-  in
-    apthost + match.Filename;
-
-  uncompressDebs = debs: name: stdenv.mkDerivation {
-    name = name;
-    srcs = debs;
-    nativeBuildInputs = [ dpkg ];
-    phases = [ "installPhase" ];
-    installPhase = ''
-      mkdir -p $out
-      for src in $srcs; do
-        echo "unpacking $src"
-        dpkg -x $src $out
-      done
-    '';
-
-    inherit meta;
-  };
-
-  joinDebs = name: names:
-  let
-    urls = builtins.map (x: getUrl aptPackages x) names;
-    sums = builtins.map (x: getSum aptPackages x) names;
-    getsrc = url: sha256: builtins.fetchurl { inherit url sha256; };
-    debs = lib.zipListsWith getsrc urls sums;
-  in
-    uncompressDebs debs "${name}-source";
-
-
-  intel-mpi = stdenv.mkDerivation rec {
-    version = v.mpi;
-    pname = "intel-mpi";
-
-    src = joinDebs pname [
-      "intel-oneapi-mpi-devel-${version}"
-      "intel-oneapi-mpi-${version}"
-    ];
-
-    nativeBuildInputs = [
-      autoPatchelfHook
-      rsync
-    ];
-
-    buildInputs = [
-      libfabric
-      zlib
-      stdenv.cc.cc.lib
-    ];
-
-    phases = [ "installPhase" "fixupPhase" ];
-    dontStrip = true;
-    installPhase = ''
-      mkdir -p $out/{bin,etc,lib,include}
-      mkdir -p $out/share/man
-
-      cd $src
-
-      # MPI
-      pushd opt/intel/oneapi/mpi/${version}
-        rsync -a man/ $out/share/man/
-        rsync -a etc/ $out/etc/
-        rsync -a include/ $out/include/
-        cp -a lib/lib* $out/lib/
-        # Copy the actual libmpi.so from release
-        cp -a lib/release/lib* $out/lib
-        # Broken due missing libze_loader.so.1
-        rsync -a --exclude IMB-MPI1-GPU bin/ $out/bin/
-      popd
-    '';
-    preFixup = ''
-      for i in $out/bin/mpi* ; do
-        echo "Fixing paths in $i"
-        sed -i "s:I_MPI_SUBSTITUTE_INSTALLDIR:$out:g" "$i"
-      done
-    '';
-
-    inherit meta;
-  };
-
-  intel-tbb = stdenv.mkDerivation rec {
-    version = v.tbb;
-    pname = "intel-tbb";
-    src = joinDebs pname [
-      "intel-oneapi-tbb-${version}"
-      "intel-oneapi-tbb-common-${version}"
-    ];
-
-    buildInputs = [
-      intel-mpi
-      libffi_3_3
-      libelf
-      libxml2
-      hwloc
-      stdenv.cc.cc.lib
-    ];
-
-    nativeBuildInputs = [
-      autoPatchelfHook
-      rsync
-    ];
-    phases = [ "installPhase" "fixupPhase" ];
-    dontStrip = true;
-
-    autoPatchelfIgnoreMissingDeps = [ "libhwloc.so.5" ];
-
-    installPhase = ''
-      mkdir -p $out/lib
-
-      cd $src
-
-      pushd opt/intel/oneapi/tbb/${version}
-        # Libraries
-        rsync -a lib/intel64/gcc4.8/ $out/lib/
-      popd
-    '';
-
-    inherit meta;
-  };
-
-  intel-compiler-shared = stdenv.mkDerivation rec {
-    version = v.compiler;
-    pname = "intel-compiler-shared";
-    src = joinDebs pname [
-      "intel-oneapi-compiler-shared-${version}"
-      "intel-oneapi-compiler-shared-common-${version}"
-      "intel-oneapi-compiler-shared-runtime-${version}"
-    ];
-
-    buildInputs = [
-      intel-mpi
-      intel-tbb
-      libffi_3_3
-      libelf
-      libxml2
-      zlib
-      hwloc
-      stdenv.cc.cc.lib
-    ];
-
-    nativeBuildInputs = [
-      autoPatchelfHook
-      rsync
-    ];
-    phases = [ "installPhase" "fixupPhase" ];
-    dontStrip = true;
-
-    autoPatchelfIgnoreMissingDeps = [ "libsycl.so.6" ];
-
-    installPhase = ''
-      mkdir -p $out/{bin,lib,include}
-      mkdir -p $out/share/man
-
-      cd $src
-
-      # Compiler
-      pushd opt/intel/oneapi/compiler/${version}
-        pushd linux
-          # Binaries
-          rsync -a bin/ $out/bin/
-          rsync -a --exclude libcilkrts.so.5 bin/intel64/ $out/bin/
-
-          # Libraries
-          rsync -a lib/ $out/lib/
-          rsync -a lib/x64/ $out/lib/
-          rsync -a compiler/lib/intel64_lin/ $out/lib/
-          chmod +w $out/lib
-          cp bin/intel64/libcilkrts.so.5 $out/lib/
-          ln -s $out/lib/libcilkrts.so.5 $out/lib/libcilkrts.so
-
-          # Headers
-          rsync -a compiler/include/ $out/include/
-        popd
-      popd
-    '';
-
-    inherit meta;
-  };
-
-
-  intel-compiler-fortran = stdenv.mkDerivation rec {
-    version = v.compiler;
-    pname = "intel-fortran";
-    src = joinDebs pname [
-      "intel-oneapi-compiler-fortran-${version}"
-      "intel-oneapi-compiler-fortran-common-${version}"
-      "intel-oneapi-compiler-fortran-runtime-${version}"
-
-      "intel-oneapi-compiler-dpcpp-cpp-classic-fortran-shared-runtime-${version}"
-      #"intel-oneapi-compiler-dpcpp-cpp-and-cpp-classic-${version}"
-      #"intel-oneapi-compiler-dpcpp-cpp-and-cpp-classic-runtime-${version}"
-    ];
-
-    langFortran = true;
-
-    buildInputs = [
-      intel-mpi
-      intel-compiler-shared
-      libffi_3_3
-      libelf
-      libxml2
-      hwloc
-      stdenv.cc.cc.lib
-    ];
-
-    nativeBuildInputs = [
-      autoPatchelfHook
-      rsync
-    ];
-
-    phases = [ "installPhase" "fixupPhase" ];
-
-    dontStrip = true;
-
-    installPhase = ''
-      mkdir -p $out/{bin,lib,include}
-      mkdir -p $out/share/man
-
-      cd $src
-
-      # Compiler
-      pushd opt/intel/oneapi/compiler/${version}
-        pushd linux
-          # Binaries
-          rsync -a bin/ $out/bin/
-          rsync -a bin/intel64/ $out/bin/
-
-          # Libraries
-          rsync -a lib/ $out/lib/
-          rsync -a compiler/lib/intel64_lin/ $out/lib/
-
-          # Headers
-          rsync -a compiler/include/ $out/include/
-        popd
-
-        # Manuals
-        rsync -a documentation/en/man/common/ $out/share/man/
-
-        # Fix lib_lin
-        ln -s $out/lib $out/lib_lin
-      popd
-    '';
-
-    inherit meta;
-  };
-
-  intel-compiler = stdenv.mkDerivation rec {
-    version = v.compiler;
-    pname = "intel-compiler";
-    src = joinDebs pname [
-      # C/C++
-      "intel-oneapi-dpcpp-cpp-${version}"
-      "intel-oneapi-compiler-dpcpp-cpp-${version}"
-      "intel-oneapi-compiler-dpcpp-cpp-common-${version}"
-      "intel-oneapi-compiler-dpcpp-cpp-runtime-${version}"
-      "intel-oneapi-compiler-dpcpp-cpp-and-cpp-classic-${version}"
-      "intel-oneapi-compiler-dpcpp-cpp-and-cpp-classic-common-${version}"
-      "intel-oneapi-compiler-dpcpp-cpp-and-cpp-classic-runtime-${version}"
-      "intel-oneapi-compiler-dpcpp-cpp-classic-fortran-shared-runtime-${version}"
-    ];
-    dontCheckForBrokenSymlinks = true;
-    # From https://aur.archlinux.org/packages/intel-oneapi-compiler:
-    # - intel-oneapi-compiler-cpp-eclipse-cfg-2023.0.0-25370_all.deb
-    # + intel-oneapi-compiler-dpcpp-cpp-2023.0.0-2023.0.0-25370_amd64.deb
-    # x intel-oneapi-compiler-dpcpp-cpp-and-cpp-classic-2023.0.0-2023.0.0-25370_amd64.deb (empty)
-    # + intel-oneapi-compiler-dpcpp-cpp-and-cpp-classic-2023.0.0-25370_amd64.deb
-    # + intel-oneapi-compiler-dpcpp-cpp-and-cpp-classic-common-2023.0.0-2023.0.0-25370_all.deb
-    # + intel-oneapi-compiler-dpcpp-cpp-and-cpp-classic-runtime-2023.0.0-2023.0.0-25370_amd64.deb
-    # + intel-oneapi-compiler-dpcpp-cpp-classic-fortran-shared-runtime-2023.0.0-2023.0.0-25370_amd64.deb
-    # + intel-oneapi-compiler-dpcpp-cpp-common-2023.0.0-2023.0.0-25370_all.deb
-    # + intel-oneapi-compiler-dpcpp-cpp-runtime-2023.0.0-2023.0.0-25370_amd64.deb
-    # - intel-oneapi-compiler-dpcpp-eclipse-cfg-2023.0.0-25370_all.deb
-    # - intel-oneapi-compiler-fortran-2023.0.0-2023.0.0-25370_amd64.deb
-    # - intel-oneapi-compiler-fortran-common-2023.0.0-2023.0.0-25370_all.deb
-    # - intel-oneapi-compiler-fortran-runtime-2023.0.0-2023.0.0-25370_amd64.deb
-    # - intel-oneapi-compiler-fortran-runtime-2023.0.0-25370_amd64.deb
-    # - intel-oneapi-compiler-shared-2023.0.0-2023.0.0-25370_amd64.deb
-    # - intel-oneapi-compiler-shared-common-2023.0.0-2023.0.0-25370_all.deb
-    # - intel-oneapi-compiler-shared-runtime-2023.0.0-2023.0.0-25370_amd64.deb
-    # - intel-oneapi-dpcpp-cpp-2023.0.0-2023.0.0-25370_amd64.deb
-    # - intel-oneapi-openmp-2023.0.0-2023.0.0-25370_amd64.deb
-    # - intel-oneapi-openmp-common-2023.0.0-2023.0.0-25370_all.deb
-
-    buildInputs = [
-      intel-compiler-shared
-      libffi_3_3
-      libelf
-      libxml2
-      hwloc
-      stdenv.cc.cc.lib
-    ];
-
-    nativeBuildInputs = [
-      autoPatchelfHook
-      rsync
-    ];
-    autoPatchelfIgnoreMissingDeps = [ "libtbb.so.12" "libtbbmalloc.so.2" "libze_loader.so.1" ];
-
-    phases = [ "installPhase" "fixupPhase" ];
-
-    dontStrip = true;
-
-    installPhase = ''
-      mkdir -p $out/{bin,lib}
-      mkdir -p $out/share/man
-
-      cd $src
-
-      # Compiler
-      pushd opt/intel/oneapi/compiler/${version}
-        pushd linux
-          # Binaries
-          rsync -a bin/ $out/bin/
-          rsync -a bin-llvm/ $out/bin/
-          rsync -a bin/intel64/ $out/bin/
-
-          # Libraries
-          rsync -a --exclude oclfpga lib/ $out/lib/
-          rsync -a compiler/lib/intel64_lin/ $out/lib/
-
-          # Headers
-          rsync -a compiler/include/ $out/include/ # Intrinsics for icc
-          rsync -a include/ $out/include/
-          chmod +w $out/include
-          ln -s $out/lib/clang/16.0.0/include/ $out/include/icx # For icx
-        popd
-
-        # Manuals
-        rsync -a documentation/en/man/common/ $out/share/man/
-      popd
-    '';
-
-    inherit meta;
-  };
-
-  wrapIntel = { cc, mygcc, extraBuild ? "", extraInstall ? "" }:
-    let
-      targetConfig = stdenv.targetPlatform.config;
-    in (wrapCCWith {
-      cc = cc;
-      extraBuildCommands = ''
-        echo "-isystem ${cc}/include" >> $out/nix-support/cc-cflags
-        echo "-isystem ${cc}/include/intel64" >> $out/nix-support/cc-cflags
-
-        echo "-L${mygcc.cc}/lib/gcc/${targetConfig}/${mygcc.version}" >> $out/nix-support/cc-ldflags
-        echo "-L${mygcc.cc.lib}/lib" >> $out/nix-support/cc-ldflags
-        echo "-L${intel-compiler-shared}/lib" >> $out/nix-support/cc-ldflags
-        echo "-L${cc}/lib" >> $out/nix-support/cc-ldflags
-
-        # Need the gcc in the path
-        # FIXME: We should find a better way to modify the PATH instead of using
-        # this ugly hack. See https://jungle.bsc.es/git/rarias/bscpkgs/issues/9
-        echo 'path_backup="${mygcc}/bin:$path_backup"' >> $out/nix-support/cc-wrapper-hook
-
-        # Disable hardening by default
-        echo "" > $out/nix-support/add-hardening.sh
-      '' + extraBuild;
-    }).overrideAttrs (old: {
-      installPhase = old.installPhase + extraInstall;
-    });
-
-  icx-wrapper = wrapIntel rec {
-    cc = intel-compiler;
-    mygcc = gcc;
-    extraBuild = ''
-      wrap icx  $wrapper $ccPath/icx
-      wrap icpx $wrapper $ccPath/icpx
-      echo "-isystem ${cc}/include/icx" >> $out/nix-support/cc-cflags
-      echo "--gcc-toolchain=${mygcc.cc}" >> $out/nix-support/cc-cflags
-    '';
-    extraInstall = ''
-      export named_cc="icx"
-      export named_cxx="icpx"
-    '';
-  };
-
-  # Legacy
-  icc-wrapper = wrapIntel rec {
-    cc = intel-compiler;
-    # Intel icc classic compiler tries to behave like the gcc found in $PATH.
-    # EVEN if it doesn't support some of the features. See:
-    # https://community.intel.com/t5/Intel-C-Compiler/builtin-shuffle-GCC-compatibility-and-has-builtin/td-p/1143619
-    mygcc = gcc;
-    extraBuild = ''
-      wrap icc  $wrapper $ccPath/icc
-      wrap icpc $wrapper $ccPath/icpc
-      echo "-isystem ${cc}/include/icc" >> $out/nix-support/cc-cflags
-    '';
-    extraInstall = ''
-      export named_cc="icc"
-      export named_cxx="icpc"
-    '';
-  };
-
-  ifort-wrapper = wrapIntel rec {
-    cc = intel-compiler-fortran;
-    mygcc = gcc;
-    extraBuild = ''
-      wrap ifort  $wrapper $ccPath/ifort
-    '';
-    extraInstall = ''
-      export named_fc="ifort"
-    '';
-  };
-
-  stdenv-icc = stdenv.override {
-    cc = icc-wrapper;
-    allowedRequisites = null;
-  };
-
-  stdenv-icx = stdenv.override {
-    cc = icx-wrapper;
-    allowedRequisites = null;
-  };
-
-  stdenv-ifort = stdenv.override {
-    cc = ifort-wrapper;
-    allowedRequisites = null;
-  };
-
-in
-  {
-    inherit intel-mpi;
-    icx = icx-wrapper;
-    icc = icc-wrapper;
-    ifort = ifort-wrapper;
-
-    stdenv = stdenv-icx;
-    stdenv-icc = stdenv-icc;
-    stdenv-ifort = stdenv-ifort;
-  }

pkgs/intel-oneapi/update.sh

@@ -1,4 +0,0 @@
-#!/bin/sh
-
-curl https://apt.repos.intel.com/oneapi/dists/all/main/binary-amd64/Packages -o amd64-packages
-curl https://apt.repos.intel.com/oneapi/dists/all/main/binary-all/Packages -o all-packages

pkgs/libpsm2/default.nix

@@ -1,44 +0,0 @@
-{ stdenv, lib, fetchFromGitHub, numactl, pkg-config }:
-
-let
-  version = "11.2.185";
-in
-stdenv.mkDerivation {
-  pname = "libpsm2";
-  inherit version;
-
-  preConfigure= ''
-    export UDEVDIR=$out/etc/udev
-    substituteInPlace ./Makefile --replace "udevrulesdir}" "prefix}/etc/udev";
-  '';
-
-  enableParallelBuilding = true;
-
-  buildInputs = [ numactl pkg-config ];
-
-  installFlags = [ 
-    "DESTDIR=$(out)"
-    "UDEVDIR=/etc/udev"
-    "LIBPSM2_COMPAT_CONF_DIR=/etc"
-  ];
-
-  src = fetchFromGitHub {
-    owner = "intel";
-    repo = "opa-psm2";
-    rev = "PSM2_${version}";
-    sha256 = "062hg4r6gz7pla9df70nqs5i2a3mp1wszmp4l0g771fykhhrxsjg";
-  };
-
-  postInstall = ''
-    mv $out/usr/* $out
-    rmdir $out/usr
-  '';
-
-  meta = with lib; {
-    homepage = "https://github.com/intel/opa-psm2";
-    description = "The PSM2 library supports a number of fabric media and stacks";
-    license = with licenses; [ gpl2 bsd3 ];
-   platforms = [ "x86_64-linux" ];
-    maintainers = [ maintainers.bzizou ];
-  };
-}

pkgs/llvm-ompss2/clang.nix

@@ -1,137 +0,0 @@
-{
-  llvmPackages_latest
-, lib
-, fetchFromGitHub
-, cmake
-, bash
-, python3
-, perl
-, which
-, elfutils
-, libffi
-, zlib
-, pkg-config
-, gcc # needed to set the rpath of libstdc++ for clang-tblgen
-, enableDebug ? false
-, useGit ? false
-, gitUrl ? "ssh://git@bscpm04.bsc.es/llvm-ompss/llvm-mono.git"
-, gitBranch ? "master"
-, gitCommit ? "872ba63f86edaefc9787984ef3fae9f2f94e0124" # github-release-2025.11
-}:
-
-let
-  stdenv = llvmPackages_latest.stdenv;
-
-  release = rec {
-    version = "2025.11";
-    src = fetchFromGitHub {
-      owner = "bsc-pm";
-      repo = "llvm";
-      rev = "refs/tags/github-release-${version}";
-      hash = "sha256-UgwMTUkM9Z87dDH205swZFBeFhrcbLAxginViG40pBM=";
-    };
-  };
-
-  git = rec {
-    version = src.shortRev;
-    src = builtins.fetchGit {
-      url = gitUrl;
-      ref = gitBranch;
-      rev = gitCommit;
-    };
-  };
-
-  source = if (useGit) then git else release;
-
-in stdenv.mkDerivation {
-  pname = "clang-ompss2";
-  inherit (source) src version;
-
-  enableParallelBuilding = true;
-
-  passthru = {
-    CC = "clang";
-    CXX = "clang++";
-
-    isClang = true;
-    isClangWithOmpss = true;
-
-    inherit gcc zlib;
-  };
-
-  nativeBuildInputs = [
-    bash
-    cmake
-    elfutils
-    llvmPackages_latest.lld
-    pkg-config
-    python3
-    perl
-    which
-    zlib
-  ];
-
-  buildInputs = [
-    libffi
-    zlib
-    gcc.cc.lib # Required for libstdc++.so.6
-  ];
-
-  # Error with -D_FORTIFY_SOURCE=2, see https://bugs.gentoo.org/636604:
-  # /build/source/compiler-rt/lib/tsan/dd/dd_interceptors.cpp:225:20:
-  # error: redefinition of 'realpath'
-  # Requires disabling the "fortify" set of flags, however, for performance we
-  # disable all:
-  hardeningDisable = [ "all" ];
-
-  cmakeBuildType = if enableDebug then "Debug" else "Release";
-
-  dontStrip = enableDebug;
-
-  dontUseCmakeBuildDir = true;
-
-  # Fix the host triple, as it has changed in a newer config.guess:
-  # https://git.savannah.gnu.org/gitweb/?p=config.git;a=commitdiff;h=ca9bfb8cc75a2be1819d89c664a867785c96c9ba
-  preConfigure = ''
-    mkdir -p build
-    cd build
-    cmakeDir="../llvm"
-    cmakeFlagsArray=(
-      "-DLLVM_HOST_TRIPLE=${stdenv.targetPlatform.config}"
-      "-DLLVM_TARGETS_TO_BUILD=host"
-      "-DLLVM_BUILD_LLVM_DYLIB=ON"
-      "-DLLVM_LINK_LLVM_DYLIB=ON"
-      # Required to run clang-ast-dump and clang-tblgen during build
-      "-DCMAKE_BUILD_RPATH=$PWD/lib:${zlib}/lib:${gcc.cc.lib}/lib"
-      "-DLLVM_ENABLE_LLD=ON"
-      "-DCMAKE_CXX_FLAGS_DEBUG=-g -ggnu-pubnames"
-      "-DCMAKE_EXE_LINKER_FLAGS_DEBUG=-Wl,--gdb-index"
-      "-DLLVM_LIT_ARGS=-sv --xunit-xml-output=xunit.xml"
-      "-DLLVM_ENABLE_PROJECTS=clang;compiler-rt;lld"
-      "-DLLVM_ENABLE_ASSERTIONS=ON"
-      "-DLLVM_INSTALL_TOOLCHAIN_ONLY=ON"
-      "-DCMAKE_INSTALL_BINDIR=bin"
-      "-DLLVM_ENABLE_ZLIB=FORCE_ON"
-      "-DLLVM_ENABLE_LIBXML2=OFF"
-      # Set the rpath to include external libraries (zlib) both on build and
-      # install
-      "-DCMAKE_INSTALL_RPATH_USE_LINK_PATH=ON"
-      "-DCMAKE_INSTALL_RPATH=${zlib}/lib:${gcc.cc.lib}/lib"
-      "-DLLVM_APPEND_VC_REV=ON"
-      "-DLLVM_FORCE_VC_REVISION=${source.version}"
-    )
-  '';
-
-# About "-DCLANG_DEFAULT_NANOS6_HOME=${nanos6}", we could specify a default
-# nanos6 installation, but this is would require a recompilation of clang each
-# time nanos6 is changed. Better to use the environment variable NANOS6_HOME,
-# and specify nanos6 at run time.
-
-  meta = {
-    homepage = "https://gitlab.pm.bsc.es/llvm-ompss/llvm-mono";
-    description = "C language family frontend for LLVM (for OmpSs-2)";
-    maintainers = with lib.maintainers.bsc; [ rpenacob ];
-    platforms = lib.platforms.linux;
-    license = [ lib.licenses.asl20 lib.licenses.llvm-exception ];
-  };
-}

pkgs/llvm-ompss2/default.nix

@@ -1,70 +0,0 @@
-{
-  stdenv
-, lib
-, gcc
-, clangOmpss2Unwrapped
-, openmp ? null
-, wrapCCWith
-, llvmPackages_latest
-, ompss2rt ? null
-}:
-
-with lib;
-
-let
-  usingNodesAndOmpv = (openmp.pname == "openmp-v" && ompss2rt.pname == "nodes");
-  sameNosv = openmp.nosv == ompss2rt.nosv;
-in
-
-assert assertMsg (usingNodesAndOmpv -> sameNosv) "OpenMP-V and NODES must share the same nOS-V";
-
-let
-  homevar = if ompss2rt.pname == "nanos6" then "NANOS6_HOME" else "NODES_HOME";
-  rtname  = if ompss2rt.pname == "nanos6" then "libnanos6" else "libnodes";
-  ompname = if openmp.pname == "openmp-v" then  "libompv" else "libomp";
-
-
-  # We need to replace the lld linker from bintools with our linker just built,
-  # otherwise we run into incompatibility issues when mixing compiler and linker
-  # versions.
-  bintools-unwrapped = llvmPackages_latest.tools.bintools-unwrapped.override {
-    lld = clangOmpss2Unwrapped;
-  };
-  bintools = llvmPackages_latest.tools.bintools.override {
-    bintools = bintools-unwrapped;
-  };
-  targetConfig = stdenv.targetPlatform.config;
-  inherit gcc;
-  cc = clangOmpss2Unwrapped;
-  gccVersion = with versions; let v = gcc.version; in concatStringsSep "." [(major v) (minor v) (patch v)];
-in wrapCCWith {
-  inherit cc bintools;
-  # extraPackages adds packages to depsTargetTargetPropagated
-  extraPackages = optional (openmp != null) openmp;
-  extraBuildCommands = ''
-    echo "-target ${targetConfig}" >> $out/nix-support/cc-cflags
-    echo "-B${gcc.cc}/lib/gcc/${targetConfig}/${gccVersion}" >> $out/nix-support/cc-cflags
-    echo "-L${gcc.cc}/lib/gcc/${targetConfig}/${gccVersion}" >> $out/nix-support/cc-ldflags
-    echo "-L${gcc.cc.lib}/lib" >> $out/nix-support/cc-ldflags
-
-    for dir in ${gcc.cc}/include/c++/*; do
-      echo "-isystem $dir" >> $out/nix-support/libcxx-cxxflags
-    done
-    for dir in ${gcc.cc}/include/c++/*/${targetConfig}; do
-      echo "-isystem $dir" >> $out/nix-support/libcxx-cxxflags
-    done
-
-    echo "--gcc-toolchain=${gcc}" >> $out/nix-support/cc-cflags
-
-    wrap clang++  $wrapper $ccPath/clang++
-
-  '' + optionalString (openmp != null) ''
-    echo "export OPENMP_RUNTIME=${ompname}" >> $out/nix-support/cc-wrapper-hook
-  '' + optionalString (ompss2rt != null) ''
-    echo "export OMPSS2_RUNTIME=${rtname}" >> $out/nix-support/cc-wrapper-hook
-    echo "export ${homevar}=${ompss2rt}"   >> $out/nix-support/cc-wrapper-hook
-  '' + optionalString (ompss2rt != null && ompss2rt.pname == "nodes") ''
-    echo "export NOSV_HOME=${ompss2rt.nosv}" >> $out/nix-support/cc-wrapper-hook
-  '';
-}
-

pkgs/llvm-ompss2/openmp.nix

@@ -1,86 +0,0 @@
-{ lib
-, llvmPackages_latest
-, monorepoSrc
-, runCommand
-, cmake
-, ninja
-, llvm
-, perl
-, pkg-config
-, version
-, nosv
-, ovni
-, python3
-, enableNosv ? false
-, enableDebug ? false
-, enableOvni ? false
-}:
-
-assert enableOvni -> enableNosv;
-
-let
-  stdenv = llvmPackages_latest.stdenv;
-in
-stdenv.mkDerivation rec {
-  pname = "openmp" + (lib.optionalString enableNosv "-v");
-  inherit version;
-
-  src = runCommand "${pname}-src" {} ''
-    mkdir -p "$out"
-    cp -r ${monorepoSrc}/cmake "$out"
-    cp -r ${monorepoSrc}/openmp "$out"
-  '';
-
-  sourceRoot = "${src.name}/openmp";
-
-  nativeBuildInputs = [
-    cmake
-    ninja
-    perl
-    pkg-config
-    python3
-  ] ++ lib.optionals enableNosv [
-    nosv
-  ] ++ lib.optionals enableOvni [
-    ovni
-  ];
-
-  doCheck = false;
-
-  hardeningDisable = [ "all" ];
-
-  cmakeBuildType = if enableDebug then "Debug" else "Release";
-
-  dontStrip = enableDebug;
-
-  separateDebugInfo = true;
-
-  cmakeFlags = [
-    "-DLIBOMP_OMPD_SUPPORT=OFF"
-    "-DOPENMP_ENABLE_LIBOMPTARGET=OFF"
-  ];
-
-  # Remove support for GNU and Intel Openmp.
-  # Also, remove libomp if building with nosv, as there is no support to build
-  # only one runtime at a time.
-  postInstall = ''
-    rm -f $out/lib/libgomp*
-    rm -f $out/lib/libiomp*
-  '' + lib.optionalString enableNosv ''
-    rm -f $out/lib/libomp.*
-    rm -f $out/libllvmrt/libomp.*
-  '';
-
-  passthru = {
-    inherit nosv;
-  };
-
-  meta = {
-    homepage = "https://gitlab.pm.bsc.es/llvm-ompss/llvm-mono";
-    description = "Support for the OpenMP language (with nOS-V)";
-    maintainers = with lib.maintainers.bsc; [ rpenacob ];
-    platforms = lib.platforms.linux;
-    license = [ lib.licenses.asl20 lib.licenses.llvm-exception ];
-  };
-}
-

pkgs/lmbench/default.nix

@@ -1,50 +0,0 @@
-{
-  lib,
-  stdenv,
-  libtirpc,
-  fetchFromGitHub
-}:
-
-stdenv.mkDerivation rec {
-  pname = "lmbench";
-  version = "941a0dcc";
-
-  # We use the intel repo as they have fixed some problems
-  src = fetchFromGitHub {
-    owner = "intel";
-    repo = pname;
-    rev = "941a0dcc0e7bdd9bb0dee05d7f620e77da8c43af";
-    sha256 = "sha256-SzwplRBO3V0R3m3p15n71ivYBMGoLsajFK2TapYxdqk=";
-  };
-
-  postPatch = ''
-    sed -i "s@/bin/rm@rm@g" $(find . -name Makefile)
-  '';
-
-  buildInputs = [ libtirpc ];
-  patches = [ ./fix-install.patch ./gcc-14.patch ];
-
-  hardeningDisable = [ "all" ];
-
-  enableParallelBuilding = false;
-
-  preBuild = ''
-    makeFlagsArray+=(
-      -C src
-      BASE=$out
-      CFLAGS=-Wno-implicit-int
-      CPPFLAGS=-I${libtirpc.dev}/include/tirpc
-      LDFLAGS=-ltirpc
-      CC=$CC
-      AR=$AR
-    )
-  '';
-
-  meta = {
-    description = "lmbench";
-    homepage = "https://github.com/intel/lmbench";
-    maintainers = with lib.maintainers.bsc; [ rarias ];
-    platforms = lib.platforms.all;
-    license = lib.licenses.gpl2Plus;
-  };
-}

pkgs/lmbench/fix-install.patch

@@ -1,10 +0,0 @@
---- a/src/Makefile
-+++ b/src/Makefile
-@@ -144,6 +144,7 @@ install-target:
- 	if [ ! -d $(BASE)/include ]; then mkdir $(BASE)/include; fi
- 	if [ ! -d $(BASE)/lib ]; then mkdir $(BASE)/lib; fi
- 	cp $(EXES) $(BASE)/bin
-+	cp $(OPT_EXES) $(BASE)/bin
- 	cp $(INCS) $(BASE)/include
- 	cp $O/lmbench.a $(BASE)/lib/libmbench.a
- 	cd ../doc; env MAKEFLAGS="$(MAKEFLAGS)" make CC="${CC}" OS="${OS}" BASE="$(BASE)" install

pkgs/lmbench/gcc-14.patch

@@ -1,77 +0,0 @@
-From a3c6e7d303cd8368e8d4e35be7cbc1997e801257 Mon Sep 17 00:00:00 2001
-From: Rodrigo Arias Mallo <rodrigo.arias@bsc.es>
-Date: Mon, 21 Jul 2025 17:38:58 +0200
-Subject: [PATCH] Misc fixes to build with gcc 14
-
----
- src/bench.h      | 2 ++
- src/lat_select.c | 2 +-
- src/lib_debug.c  | 1 +
- src/lib_sched.c  | 2 +-
- src/lib_timing.c | 2 +-
- 5 files changed, 6 insertions(+), 3 deletions(-)
-
-diff --git a/src/bench.h b/src/bench.h
-index 8166408..4da9079 100644
---- a/src/bench.h
-+++ b/src/bench.h
-@@ -320,4 +320,6 @@ extern int handle_scheduler(int childno, int benchproc, int nbenchprocs);
- extern char *rpc_xact_1();
- extern char *client_rpc_xact_1();
- 
-+void lmbench_usage(int argc, char *argv[], char* usage);
-+
- #endif /* _BENCH_H */
-diff --git a/src/lat_select.c b/src/lat_select.c
-index 583b505..39df369 100644
---- a/src/lat_select.c
-+++ b/src/lat_select.c
-@@ -164,7 +164,7 @@ doit(iter_t iterations, void * cookie)
- 	state_t * 	state = (state_t *)cookie;
- 	fd_set		nosave;
- 	static struct timeval tv;
--	static count = 0;
-+	static int count = 0;
- 	
- 	tv.tv_sec = 0;
- 	tv.tv_usec = 0;
-diff --git a/src/lib_debug.c b/src/lib_debug.c
-index e8347dd..cf65312 100644
---- a/src/lib_debug.c
-+++ b/src/lib_debug.c
-@@ -1,5 +1,6 @@
- #include "bench.h"
- #include "lib_debug.h"
-+#include <math.h>
- 
- /*
-  * return micro-seconds / iteration at the the fraction point.
-diff --git a/src/lib_sched.c b/src/lib_sched.c
-index aa83ae0..4f16bbf 100644
---- a/src/lib_sched.c
-+++ b/src/lib_sched.c
-@@ -91,7 +91,7 @@ handle_scheduler(int childno, int benchproc, int nbenchprocs)
- 			     childno * (nbenchprocs + 1) + benchproc);
- 	} else {
- 		/* default action: do nothing */
--		return;
-+		return 0;
- 	}
- 
- 	return sched_pin(cpu % sched_ncpus());
-diff --git a/src/lib_timing.c b/src/lib_timing.c
-index af8cf68..7ec9652 100644
---- a/src/lib_timing.c
-+++ b/src/lib_timing.c
-@@ -1623,7 +1623,7 @@ bread(void* buf, long nbytes)
- void
- touch(char *buf, int nbytes)
- {
--	static	psize;
-+	static int psize;
- 
- 	if (!psize) {
- 		psize = getpagesize();
--- 
-2.49.0
-

pkgs/maintainers.nix

@@ -1,7 +0,0 @@
-builtins.mapAttrs (name: value: { email = name + "@bsc.es"; } // value) {
-  abonerib.name = "Aleix Boné";
-  arocanon.name = "Aleix Roca";
-  rarias.name = "Rodrigo Arias";
-  rpenacob.name = "Raúl Peñacoba";
-  varcila.name = "Vincent Arcila";
-}

pkgs/mcxx/default.nix

@@ -1,74 +0,0 @@
-{
-  stdenv
-, lib
-, fetchFromGitHub
-, autoreconfHook
-, nanos6
-, gperf
-, python3
-, gfortran
-, pkg-config
-, sqlite
-, flex
-, bison
-, gcc
-}:
-
-stdenv.mkDerivation rec {
-  pname = "mcxx";
-  version = "2023.11";
-
-  passthru = {
-    CC = "mcc";
-    CXX = "mcxx";
-  };
-
-  # mcxx doesn't use tags, so we pick the same version of the ompss2 release
-  src = fetchFromGitHub {
-    owner = "bsc-pm";
-    repo = pname;
-    rev = "github-release-${version}";
-    hash = "sha256-GyBvyy/HD3t9rHSXAYZRMhn4o4Nm/HFfjuOS8J0LPu8=";
-  };
-
-  enableParallelBuilding = true;
-
-  nativeBuildInputs = [
-    autoreconfHook
-    bison
-    flex
-    python3
-    gfortran
-    pkg-config
-    gperf
-    gcc
-  ];
-
-  buildInputs = [
-    nanos6
-    sqlite.dev
-  ];
-
-  patches = [ ./intel.patch ];
-
-  preConfigure = ''
-    export ICC=icc
-    export ICPC=icpc
-    export IFORT=ifort
-  '';
-
-  configureFlags = [
-    "--enable-ompss-2"
-    "--with-nanos6=${nanos6}"
-# Fails with "memory exhausted" with bison 3.7.1
-#    "--enable-bison-regeneration"
-  ];
-
-  meta = {
-    homepage = "https://github.com/bsc-pm/mcxx";
-    description = "C/C++/Fortran source-to-source compilation infrastructure aimed at fast prototyping";
-    maintainers = with lib.maintainers.bsc; [ rpenacob ];
-    platforms = lib.platforms.linux;
-    license = lib.licenses.gpl3Plus;
-  };
-}

pkgs/mcxx/git.nix

@@ -1,69 +0,0 @@
-{
-  stdenv
-, lib
-, fetchFromGitHub
-, autoreconfHook
-, nanos6
-, gperf
-, python
-, gfortran
-, pkg-config
-, sqlite
-, flex
-, bison
-, gcc
-}:
-
-stdenv.mkDerivation rec {
-  pname = "mcxx";
-  version = src.shortRev;
-
-  passthru = {
-    CC = "mcc";
-    CXX = "mcxx";
-  };
-
-  src = builtins.fetchGit {
-    url = "ssh://git@bscpm04.bsc.es/mercurium/mcxx";
-    ref = "master";
-  };
-
-  enableParallelBuilding = true;
-
-  buildInputs = [
-    autoreconfHook
-    nanos6
-    gperf
-    python
-    gfortran
-    pkg-config
-    sqlite.dev
-    bison
-    flex
-    gcc
-  ];
-
-  # TODO: Not sure if we need this patch anymore (?)
-  #patches = [ ./intel.patch ];
-
-  preConfigure = ''
-    export ICC=icc
-    export ICPC=icpc
-    export IFORT=ifort
-  '';
-
-  configureFlags = [
-    "--enable-ompss-2"
-    "--with-nanos6=${nanos6}"
-# Fails with "memory exhausted" with bison 3.7.1
-#    "--enable-bison-regeneration"
-  ];
-
-  meta = {
-    homepage = "https://github.com/bsc-pm/mcxx";
-    description = "C/C++/Fortran source-to-source compilation infrastructure aimed at fast prototyping";
-    maintainers = with lib.maintainers.bsc; [ rpenacob ];
-    platforms = lib.platforms.linux;
-    license = lib.licenses.gpl3Plus;
-  };
-}

pkgs/mcxx/intel.patch

@@ -1,19 +0,0 @@
---- a/configure.ac	2020-07-10 16:15:11.431606455 +0200
-+++ b/configure.ac	2020-07-10 16:15:24.291586572 +0200
-@@ -367,16 +367,6 @@
-   [ enable_intel_compilers="yes"])
- AC_MSG_RESULT([$enable_intel_compilers])
- 
--
--IFORT=
--ICC=
--ICPC=
--if test x"$enable_intel_compilers" = x"yes";
--then
--   AC_CHECK_PROG([IFORT], [ifort], [ifort])
--   AC_CHECK_PROG([ICC], [icc], [icc])
--   AC_CHECK_PROG([ICPC], [icpc], [icpc])
--fi
- dnl --------------- END Intel Compilers ---------------------
- 
- mic_compilation="no"

pkgs/mcxx/rarias.nix

@@ -1,68 +0,0 @@
-{ stdenv
-, lib
-, fetchgit
-, autoreconfHook
-, nanos6
-, gperf
-, python
-, gfortran
-, pkg-config
-, sqlite
-, flex
-, bison
-, gcc
-}:
-
-stdenv.mkDerivation rec {
-  name = "mcxx-rarias";
-  #version attribute ignored when using fetchgit:
-  #version = "2.2.0-70a299cf";
-
-  #src = /home/Computational/rarias/mcxx;
-  src = builtins.fetchGit {
-    url = "ssh://git@bscpm04.bsc.es/rarias/mcxx";
-    rev = "44129a6ac05b8f78b06e9e2eff71438b5ca4d29f";
-  };
-
-  enableParallelBuilding = true;
-
-  buildInputs = [
-    autoreconfHook
-    nanos6
-    gperf
-    python
-    gfortran
-    pkg-config
-    sqlite.dev
-    bison
-    flex
-    gcc
-  ];
-
-  patches = [ ./intel.patch ];
-
-  preConfigure = ''
-    export ICC=icc
-    export ICPC=icpc
-    export IFORT=ifort
-  '';
-
-  configureFlags = [
-    "--enable-ompss-2"
-    "--with-nanos6=${nanos6}"
-#    "--enable-bison-regeneration"
-  ];
-
-  # Regenerate ia32 builtins to add the ones for gcc9
-  #preBuild = ''
-  #  make generate_builtins_ia32 GXX_X86_BUILTINS=${gcc}/bin/g++
-  #'';
-  #
-  meta = {
-    homepage = "https://github.com/bsc-pm/mcxx";
-    description = "C/C++/Fortran source-to-source compilation infrastructure aimed at fast prototyping";
-    maintainers = with lib.maintainers.bsc; [ rarias ];
-    platforms = lib.platforms.linux;
-    license = lib.licenses.gpl3Plus;
-  };
-}

pkgs/mpich/default.nix

@@ -1,61 +0,0 @@
-{
-  stdenv
-, lib
-, libfabric
-, mpich
-, pmix
-, gfortran
-, symlinkJoin
-# Disabled when cross-compiling
-# To fix cross compilation, we should fill the values in:
-# https://github.com/pmodels/mpich/blob/main/maint/fcrosscompile/cross_values.txt.in
-# For each arch
-, enableFortran ? stdenv.hostPlatform == stdenv.buildPlatform
-, perl
-, targetPackages
-}:
-
-let
-  # pmix comes with the libraries in .out and headers in .dev
-  pmixAll = symlinkJoin {
-    name = "pmix-all";
-    paths = [ pmix.dev pmix.out ];
-  };
-in mpich.overrideAttrs (old: {
-  buildInputs = old.buildInputs ++ [
-    libfabric
-    pmixAll
-  ];
-  nativeBuildInputs = old.nativeBuildInputs ++ [
-    perl
-  ];
-  configureFlags = [
-    "--enable-shared"
-    "--enable-sharedlib"
-    "--with-pm=no"
-    "--with-device=ch4:ofi"
-    "--with-pmi=pmix"
-    "--with-pmix=${pmixAll}"
-    "--with-libfabric=${libfabric}"
-    "--enable-g=log"
-  ] ++ lib.optionals (lib.versionAtLeast gfortran.version "10") [
-    "FFLAGS=-fallow-argument-mismatch" # https://github.com/pmodels/mpich/issues/4300
-    "FCFLAGS=-fallow-argument-mismatch"
-  ] ++ lib.optionals (!enableFortran) [
-    "--disable-fortran"
-  ];
-
-  preFixup = ''
-    sed -i 's:^CC=.*:CC=${targetPackages.stdenv.cc}/bin/${targetPackages.stdenv.cc.targetPrefix}cc:' $out/bin/mpicc
-    sed -i 's:^CXX=.*:CXX=${targetPackages.stdenv.cc}/bin/${targetPackages.stdenv.cc.targetPrefix}c++:' $out/bin/mpicxx
-  '' + lib.optionalString enableFortran ''
-    sed -i 's:^FC=.*:FC=${targetPackages.gfortran or gfortran}/bin/${targetPackages.gfortran.targetPrefix or gfortran.targetPrefix}gfortran:' $out/bin/mpifort
-  '';
-
-  hardeningDisable = [ "all" ];
-
-  meta = old.meta // {
-    maintainers = old.meta.maintainers ++ (with lib.maintainers.bsc; [ rarias ]);
-    cross = true;
-  };
-})

pkgs/nanos6/0001-Add-missing-cstdint-include.patch

@@ -1,32 +0,0 @@
-From 6fc5bef066ac011d6b15a7c090f4498b0b730818 Mon Sep 17 00:00:00 2001
-From: Rodrigo Arias Mallo <rodrigo.arias@bsc.es>
-Date: Fri, 12 Apr 2024 14:44:43 +0200
-Subject: [PATCH] Add missing cstdint include
-
----
- src/dependencies/DataTrackingSupport.hpp | 3 ++-
- 1 file changed, 2 insertions(+), 1 deletion(-)
-
-diff --git a/src/dependencies/DataTrackingSupport.hpp b/src/dependencies/DataTrackingSupport.hpp
-index 56226085..cdfd5e1c 100644
---- a/src/dependencies/DataTrackingSupport.hpp
-+++ b/src/dependencies/DataTrackingSupport.hpp
-@@ -1,13 +1,14 @@
- /*
- 	This file is part of Nanos6 and is licensed under the terms contained in the COPYING file.
- 
--	Copyright (C) 2020 Barcelona Supercomputing Center (BSC)
-+	Copyright (C) 2020-2024 Barcelona Supercomputing Center (BSC)
- */
- 
- #ifndef DATA_TRACKING_SUPPORT_HPP
- #define DATA_TRACKING_SUPPORT_HPP
- 
- #include "support/config/ConfigVariable.hpp"
-+#include <cstdint>
- 
- class Task;
- 
--- 
-2.44.0
-

pkgs/nanos6/default.nix

@@ -1,130 +0,0 @@
-{
-  stdenv
-, lib
-, fetchFromGitHub
-, automake
-, autoconf
-, libtool
-, pkg-config
-, numactl
-, hwloc
-, papi
-, boost
-, ovni
-, enableDebug ? false
-, enableJemalloc ? true
-, jemallocNanos6 ? null
-, cachelineBytes ? 64
-, enableGlibcxxDebug ? false
-, enablePapi ? stdenv.hostPlatform == stdenv.buildPlatform # Disabled when cross-compiling
-, useGit ? false
-, gitUrl ? "ssh://git@bscpm04.bsc.es/nanos6/nanos6"
-, gitBranch ? "master"
-, gitCommit ? "f82762b66c82b5174a8eaad33f6c2f335ac759b4"
-}:
-
-assert enableJemalloc -> (jemallocNanos6 != null);
-
-with lib;
-
-let
-  release = rec {
-    version = "4.3";
-    src = fetchFromGitHub {
-      owner = "bsc-pm";
-      repo = "nanos6";
-      rev = "version-${version}";
-      hash = "sha256-/c6WiKBsAo/01uvMRmjv0PMucbrgvaGmbxlPE6q+dfE=";
-    };
-  };
-
-  git = rec {
-    version = src.shortRev;
-    src = builtins.fetchGit {
-      url = gitUrl;
-      ref = gitBranch;
-      rev = gitCommit;
-    };
-  };
-
-  source = if (useGit) then git else release;
-
-  isCross = stdenv.hostPlatform != stdenv.buildPlatform;
-in
-  stdenv.mkDerivation (source // {
-    pname = "nanos6";
-
-    prePatch = ''
-      patchShebangs scripts/generate_config.sh
-      patchShebangs autogen.sh
-    '';
-
-    enableParallelBuilding = true;
-
-    preConfigure = ''
-      export CACHELINE_WIDTH=${toString cachelineBytes}
-      ./autogen.sh
-    '' + lib.optionalString (useGit) ''
-      export NANOS6_GIT_VERSION=${gitCommit}
-      export NANOS6_GIT_BRANCH=${gitBranch}
-    '';
-
-    configureFlags = [
-      "--with-hwloc=${hwloc}"
-      "--disable-all-instrumentations"
-      "--enable-ovni-instrumentation"
-      "--with-ovni=${ovni}"
-      "--with-boost=${boost.dev}"
-    ] ++
-      (optional enableJemalloc "--with-jemalloc=${jemallocNanos6}") ++
-      (optional enableGlibcxxDebug "CXXFLAGS=-D_GLIBCXX_DEBUG") ++
-      # Most nanos6 api symbols are resolved at runtime, so prefer
-      # ifunc by default
-      (optional isCross "--with-symbol-resolution=ifunc");
-
-    postConfigure = lib.optionalString (!enableDebug) ''
-      # Disable debug
-      sed -i 's/\([a-zA-Z0-9_]*nanos6_debug[a-zA-Z0-9_]*\)\s*[+]\?=.*/\1 =/g' Makefile.am
-    '';
-
-    # The "bindnow" flags are incompatible with ifunc resolution mechanism. We
-    # disable all by default, which includes bindnow.
-    hardeningDisable = [ "all" ];
-
-    # Keep debug symbols in the debug variant of the library
-    dontStrip = enableDebug;
-    separateDebugInfo = true;
-
-    nativeBuildInputs = [
-      autoconf
-      automake
-      libtool
-      pkg-config
-
-      # TODO: papi_version is needed for configure:
-      # ./configure: line 27378: papi_version: command not found
-      # This probably breaks cross-compilation
-    ] ++ lib.optionals enablePapi [ papi ];
-
-    buildInputs = [
-      boost
-      numactl
-      hwloc
-      ovni
-    ] ++ lib.optionals enablePapi [ papi ];
-
-    # Create a script that sets NANOS6_HOME
-    postInstall = ''
-      mkdir -p $out/nix-support
-      echo "export NANOS6_HOME=$out" >> $out/nix-support/setup-hook
-    '';
-
-    meta = {
-      homepage = "https://github.com/bsc-pm/nanos6";
-      description = "Nanos6 runtime for OmpSs-2" +
-        optionalString (enableDebug) " (with debug symbols)";
-      maintainers = with lib.maintainers.bsc; [ rarias ];
-      platforms = lib.platforms.linux;
-      license = lib.licenses.gpl3Plus;
-    };
-  })

pkgs/nanos6/jemalloc.nix

@@ -1,13 +0,0 @@
-{ jemalloc, lib }:
-
-jemalloc.overrideAttrs (old: {
-  configureFlags = old.configureFlags ++ [
-    "--with-jemalloc-prefix=nanos6_je_"
-    "--enable-stats"
-  ];
-  hardeningDisable = [ "all" ];
-  meta = old.meta // {
-    description = old.meta.description + " (for Nanos6)";
-    maintainers = (old.meta.maintainers or []) ++ (with lib.maintainers.bsc; [ rarias ]);
-  };
-})

pkgs/nix-wrap/default.nix

@@ -1,100 +0,0 @@
-{
-  stdenv
-, lib
-, bashInteractive
-, busybox
-, nix
-, writeText
-, pkgsStatic
-}:
-
-let
-  bubblewrap = pkgsStatic.bubblewrap;
-  nixPrefix = "/gpfs/projects/bsc15/nix";
-  nixConfDir = "share";
-  nix_wrap_sh = writeText "nix-wrap.sh" ''
-    #!/usr/bin/env bash
-    #
-    busybox_bin="${nixPrefix}${busybox}/bin"
-    bubblewrap_bin="${nixPrefix}/${bubblewrap}/bin"
-
-    bashInteractive_bin="${bashInteractive}/bin"
-    nix_bin="${nix}/bin"
-    
-    rootdir=$(mktemp -d)
-    tmpdir=$(mktemp -d)
-    
-    args=(
-      --bind "$rootdir/" /
-      --bind "${nixPrefix}/nix" /nix
-      --bind "$busybox_bin" /bin
-      --dev-bind /dev /dev
-      --bind /boot /boot
-      --proc /proc
-      --bind /run /run
-      --bind /sys /sys
-      --bind "$tmpdir" /tmp
-      --bind "$PWD" "$PWD"
-      --bind /etc/host.conf /etc/host.conf
-      --bind /etc/hosts /etc/hosts
-      --bind /etc/networks /etc/networks
-      --bind /etc/passwd /etc/passwd
-      --bind /etc/group /etc/group
-      --bind /etc/nsswitch.conf /etc/nsswitch.conf
-      --bind /etc/resolv.conf /etc/resolv.conf
-    )
-    
-    export PATH="/bin:$bashInteractive_bin"
-    export PATH="$nix_bin:$PATH"
-    export TMPDIR=/tmp
-    export PS1="[nix-wrap] \u@\h \W $ "
-    export NIX_CONF_DIR=@out@/share
-
-    if [ $# -eq 0 ]; then
-      "$bubblewrap_bin/bwrap" ''${args[@]} /bin/sh
-    else
-      "$bubblewrap_bin/bwrap" ''${args[@]} "''${@}"
-    fi
-    
-  '';
-  nix_conf = writeText "nix.conf" ''
-    experimental-features = nix-command flakes
-    sandbox-fallback = false
-  '';
-
-in
-
-stdenv.mkDerivation rec {
-  version = "0.0.1";
-  name = "nix-wrap";
-  buildInputs = [
-    bashInteractive
-    busybox
-    nix
-  ];
-  src = null;
-  dontUnpack = true;
-  dontConfigure = true;
-  dontBuild = true;
-  dontPatchShebangs = true;
-  NIX_DEBUG = 0;
-
-  installPhase = ''
-    mkdir -p $out/bin
-    substituteAll ${nix_wrap_sh} $out/bin/nix-wrap
-    chmod +x $out/bin/nix-wrap
-
-    mkdir -p $out/share
-    cp ${nix_conf} $out/share/nix.conf
-  '';
-
-  meta = {
-    homepage = null;
-    description = "nix bubblewrap wrapper";
-    maintainers = [ ];
-    broken = true;
-    platforms = lib.platforms.linux;
-    license = lib.licenses.mit;
-  };
-}
-

pkgs/nix/default.nix

@@ -1,219 +0,0 @@
-{ lib, fetchurl, fetchFromGitHub, callPackage
-, storeDir ? "/nix/store"
-, stateDir ? "/nix/var"
-, confDir ? "/etc"
-, boehmgc
-, stdenv, llvmPackages_6
-}:
-
-let
-
-common =
-  { lib, stdenv, fetchpatch, perl, curl, bzip2, sqlite, openssl ? null, xz
-  , bash, coreutils, gzip, gnutar
-  , pkg-config, boehmgc, perlPackages, libsodium, brotli, boost, editline, nlohmann_json
-  , autoreconfHook, autoconf-archive, bison, flex, libxml2, libxslt, docbook5, docbook_xsl_ns
-  , jq, libarchive, rustc, cargo
-  # Used by tests
-  , gmock
-  , busybox-sandbox-shell
-  , storeDir
-  , stateDir
-  , confDir
-  , withLibseccomp ? lib.any (lib.meta.platformMatch stdenv.hostPlatform) libseccomp.meta.platforms, libseccomp
-  , withAWS ? stdenv.isLinux || stdenv.isDarwin, aws-sdk-cpp
-
-  , name, suffix ? "", src, crates ? null
-
-  }:
-  let
-     sh = busybox-sandbox-shell;
-     nix = stdenv.mkDerivation rec {
-      inherit name src;
-      version = lib.getVersion name;
-
-      is24 = lib.versionAtLeast version "2.4pre";
-      isExactly23 = lib.versionAtLeast version "2.3" && lib.versionOlder version "2.4";
-
-      VERSION_SUFFIX = suffix;
-
-      outputs = [ "out" "dev" "man" "doc" ];
-
-      nativeBuildInputs =
-        [ pkg-config ]
-        ++ lib.optionals is24 [ autoreconfHook autoconf-archive bison flex libxml2 libxslt
-                                docbook5 docbook_xsl_ns jq gmock ];
-
-      buildInputs =
-        [ curl openssl sqlite xz bzip2 nlohmann_json
-          brotli boost editline
-        ]
-        ++ lib.optional (stdenv.isLinux || stdenv.isDarwin) libsodium
-        ++ lib.optionals is24 [ libarchive rustc cargo ]
-        ++ lib.optional withLibseccomp libseccomp
-        ++ lib.optional withAWS
-            ((aws-sdk-cpp.override {
-              apis = ["s3" "transfer"];
-              customMemoryManagement = false;
-            }).overrideDerivation (args: {
-              patches = args.patches or [] ++ [(fetchpatch {
-                url = "https://github.com/edolstra/aws-sdk-cpp/commit/7d58e303159b2fb343af9a1ec4512238efa147c7.patch";
-                sha256 = "103phn6kyvs1yc7fibyin3lgxz699qakhw671kl207484im55id1";
-              })];
-            }));
-
-      propagatedBuildInputs = [ boehmgc ];
-
-      # Seems to be required when using std::atomic with 64-bit types
-      NIX_LDFLAGS = lib.optionalString (stdenv.hostPlatform.system == "armv5tel-linux" || stdenv.hostPlatform.system == "armv6l-linux") "-latomic";
-
-      preConfigure =
-        # Copy libboost_context so we don't get all of Boost in our closure.
-        # https://github.com/NixOS/nixpkgs/issues/45462
-        ''
-          mkdir -p $out/lib
-          cp -pd ${boost}/lib/{libboost_context*,libboost_thread*,libboost_system*} $out/lib
-          rm -f $out/lib/*.a
-          ${lib.optionalString stdenv.isLinux ''
-            chmod u+w $out/lib/*.so.*
-            patchelf --set-rpath $out/lib:${stdenv.cc.cc.lib}/lib $out/lib/libboost_thread.so.*
-          ''}
-        '' +
-        # Unpack the Rust crates.
-        lib.optionalString is24 ''
-          tar xvf ${crates} -C nix-rust/
-          mv nix-rust/nix-vendored-crates* nix-rust/vendor
-        '' +
-        # For Nix-2.3, patch around an issue where the Nix configure step pulls in the
-        # build system's bash and other utilities when cross-compiling
-        lib.optionalString (stdenv.buildPlatform != stdenv.hostPlatform && isExactly23) ''
-          mkdir tmp/
-          substitute corepkgs/config.nix.in tmp/config.nix.in \
-            --subst-var-by bash ${bash}/bin/bash \
-            --subst-var-by coreutils ${coreutils}/bin \
-            --subst-var-by bzip2 ${bzip2}/bin/bzip2 \
-            --subst-var-by gzip ${gzip}/bin/gzip \
-            --subst-var-by xz ${xz}/bin/xz \
-            --subst-var-by tar ${gnutar}/bin/tar \
-            --subst-var-by tr ${coreutils}/bin/tr
-          mv tmp/config.nix.in corepkgs/config.nix.in
-          '';
-
-      configureFlags =
-        [ "--with-store-dir=${storeDir}"
-          "--localstatedir=${stateDir}"
-          "--sysconfdir=${confDir}"
-          "--disable-init-state"
-          "--enable-gc"
-        ]
-        ++ lib.optionals stdenv.isLinux [
-          "--with-sandbox-shell=${sh}/bin/busybox"
-        ]
-        ++ lib.optional (
-            stdenv.hostPlatform != stdenv.buildPlatform && stdenv.hostPlatform ? nix && stdenv.hostPlatform.nix ? system
-        ) ''--with-system=${stdenv.hostPlatform.nix.system}''
-           # RISC-V support in progress https://github.com/seccomp/libseccomp/pull/50
-        ++ lib.optional (!withLibseccomp) "--disable-seccomp-sandboxing";
-
-      makeFlags = [ "profiledir=$(out)/etc/profile.d" ];
-
-      installFlags = [ "sysconfdir=$(out)/etc" ];
-
-      doInstallCheck = false;
-
-      # socket path becomes too long otherwise
-      #preInstallCheck = lib.optional stdenv.isDarwin ''
-      #  export TMPDIR=$NIX_BUILD_TOP
-      #'';
-
-      separateDebugInfo = stdenv.isLinux;
-
-      enableParallelBuilding = true;
-
-      meta = {
-        description = "Powerful package manager that makes package management reliable and reproducible";
-        longDescription = ''
-          Nix is a powerful package manager for Linux and other Unix systems that
-          makes package management reliable and reproducible. It provides atomic
-          upgrades and rollbacks, side-by-side installation of multiple versions of
-          a package, multi-user package management and easy setup of build
-          environments.
-        '';
-        homepage = "https://nixos.org/";
-        license = lib.licenses.lgpl2Plus;
-        maintainers = [ lib.maintainers.eelco ];
-        platforms = lib.platforms.unix;
-        outputsToInstall = [ "out" "man" ];
-      };
-
-      passthru = {
-        perl-bindings = stdenv.mkDerivation {
-          pname = "nix-perl";
-          inherit version;
-
-          inherit src;
-
-          postUnpack = "sourceRoot=$sourceRoot/perl";
-
-          # This is not cross-compile safe, don't have time to fix right now
-          # but noting for future travellers.
-          nativeBuildInputs =
-            [ perl pkg-config curl nix libsodium boost autoreconfHook autoconf-archive ];
-
-          configureFlags =
-            [ "--with-dbi=${perlPackages.DBI}/${perl.libPrefix}"
-              "--with-dbd-sqlite=${perlPackages.DBDSQLite}/${perl.libPrefix}"
-            ];
-
-          preConfigure = "export NIX_STATE_DIR=$TMPDIR";
-
-          preBuild = "unset NIX_INDENT_MAKE";
-        };
-      };
-    };
-  in nix;
-
-in rec {
-
-  nix = nixUnstable;
-
-  nixUnstable = lib.lowPrio (callPackage common rec {
-    name = "nix-2.4${suffix}";
-    suffix = "pre7534_b92f58f6";
-
-    #src = /home/Computational/rarias/nix/nix-rodarima;
-    src = fetchFromGitHub {
-      owner = "rodarima";
-      repo = "nix";
-      rev = "3a642187c33ed46d952d3a50a83b2576b704fab7";
-      sha256 = "0s8is2czpkcj1x1kcjqgbnsbbl03w3fwjjiclsd44zh1ij3wb90s";
-    };
-
-    crates = fetchurl {
-      url = "https://hydra.nixos.org/build/118797694/download/1/nix-vendored-crates-2.4pre7534_b92f58f6.tar.xz";
-      sha256 = "a4c2612bbd81732bbb899bc0c230e07b16f6b6150ffbb19c4907dedbbc2bf9fc";
-    };
-
-    inherit storeDir stateDir confDir boehmgc;
-  });
-
-  nixFlakes = lib.lowPrio (callPackage common rec {
-    name = "nix-2.4${suffix}";
-    suffix = "pre20200521_00b562c";
-
-    src = fetchFromGitHub {
-      owner = "NixOS";
-      repo = "nix";
-      rev = "00b562c87ec4c3bbe514f5dc1f4d1c41f66f66bf";
-      sha256 = "0s8is2czpkcj1x1kcjqgbnsbbl03w3fwjjiclsd44zh1ij3wb90s";
-    };
-
-    crates = fetchurl {
-      url = "https://hydra.nixos.org/build/118093786/download/1/nix-vendored-crates-2.4pre20200501_941f952.tar.xz";
-      sha256 = "060f4n5srdbb8vsj0m14aqch7im79a4h5g3nrs41p1xc602vhcdl";
-    };
-
-    inherit storeDir stateDir confDir boehmgc;
-  });
-
-}

pkgs/nix/static.nix

@@ -1,214 +0,0 @@
-{ lib, fetchurl, fetchFromGitHub, callPackage
-, storeDir ? "/nix/store"
-, stateDir ? "/nix/var"
-, confDir ? "/etc"
-, boehmgc
-, stdenv, llvmPackages_6
-, sandbox-shell ? "/bin/sh"
-}:
-
-let
-
-enableStatic = true;
-
-common =
-  { lib, stdenv, fetchpatch, perl, curl, bzip2, sqlite, openssl ? null, xz
-  , bash, coreutils, gzip, gnutar
-  , pkg-config, boehmgc, perlPackages, libsodium, brotli, boost, editline, nlohmann_json
-  , autoreconfHook, autoconf-archive, bison, flex, libxml2, libxslt, docbook5, docbook_xsl_ns
-  , jq, libarchive
-  # Used by tests
-  , gmock
-  , storeDir
-  , stateDir
-  , confDir
-  , withLibseccomp ? lib.any (lib.meta.platformMatch stdenv.hostPlatform) libseccomp.meta.platforms, libseccomp
-  , withAWS ? !enableStatic && (stdenv.isLinux || stdenv.isDarwin), aws-sdk-cpp
-  , enableStatic ? true
-  , name, suffix ? "", src
-
-  }:
-  let
-     nix = stdenv.mkDerivation rec {
-      inherit name src;
-      version = lib.getVersion name;
-
-      is24 = lib.versionAtLeast version "2.4pre";
-      isExactly23 = lib.versionAtLeast version "2.3" && lib.versionOlder version "2.4";
-
-      VERSION_SUFFIX = suffix;
-
-      outputs = [ "out" "dev" "man" "doc" ];
-
-      nativeBuildInputs =
-        [ pkg-config ]
-        ++ lib.optionals is24 [ autoreconfHook autoconf-archive bison flex libxml2 libxslt
-                                docbook5 docbook_xsl_ns jq ];
-
-      buildInputs =
-        [ curl openssl sqlite xz bzip2 nlohmann_json
-          brotli boost editline boehmgc
-        ]
-        ++ lib.optional (stdenv.isLinux || stdenv.isDarwin) libsodium
-        ++ lib.optionals is24 [ libarchive gmock ]
-        ++ lib.optional withLibseccomp libseccomp
-        ++ lib.optional withAWS
-            ((aws-sdk-cpp.override {
-              apis = ["s3" "transfer"];
-              customMemoryManagement = false;
-            }).overrideDerivation (args: {
-              patches = args.patches or [] ++ [(fetchpatch {
-                url = "https://github.com/edolstra/aws-sdk-cpp/commit/7d58e303159b2fb343af9a1ec4512238efa147c7.patch";
-                sha256 = "103phn6kyvs1yc7fibyin3lgxz699qakhw671kl207484im55id1";
-              })];
-            }));
-
-      propagatedBuildInputs = [ boehmgc ];
-
-      # Seems to be required when using std::atomic with 64-bit types
-      NIX_LDFLAGS =
-        # need to list libraries individually until
-        # https://github.com/NixOS/nix/commit/3e85c57a6cbf46d5f0fe8a89b368a43abd26daba
-        # is in a release
-          lib.optionalString enableStatic "-lssl -lbrotlicommon -lssh2 -lz -lnghttp2 -lcrypto"
-
-        # need to detect it here until
-        # https://github.com/NixOS/nix/commits/74b4737d8f0e1922ef5314a158271acf81cd79f8
-        # is in a release
-        + lib.optionalString (stdenv.hostPlatform.system == "armv5tel-linux" || stdenv.hostPlatform.system == "armv6l-linux") "-latomic";
-
-      preConfigure =
-        # Copy libboost_context so we don't get all of Boost in our closure.
-        # https://github.com/NixOS/nixpkgs/issues/45462
-        lib.optionalString (!enableStatic) ''
-          mkdir -p $out/lib
-          cp -pd ${boost}/lib/{libboost_context*,libboost_thread*,libboost_system*} $out/lib
-          rm -f $out/lib/*.a
-          ${lib.optionalString stdenv.isLinux ''
-            chmod u+w $out/lib/*.so.*
-            patchelf --set-rpath $out/lib:${stdenv.cc.cc.lib}/lib $out/lib/libboost_thread.so.*
-          ''}
-        '' +
-        # For Nix-2.3, patch around an issue where the Nix configure step pulls in the
-        # build system's bash and other utilities when cross-compiling
-        lib.optionalString (stdenv.buildPlatform != stdenv.hostPlatform && isExactly23) ''
-          mkdir tmp/
-          substitute corepkgs/config.nix.in tmp/config.nix.in \
-            --subst-var-by bash ${bash}/bin/bash \
-            --subst-var-by coreutils ${coreutils}/bin \
-            --subst-var-by bzip2 ${bzip2}/bin/bzip2 \
-            --subst-var-by gzip ${gzip}/bin/gzip \
-            --subst-var-by xz ${xz}/bin/xz \
-            --subst-var-by tar ${gnutar}/bin/tar \
-            --subst-var-by tr ${coreutils}/bin/tr
-          mv tmp/config.nix.in corepkgs/config.nix.in
-          '';
-
-      configureFlags =
-        [ "--with-store-dir=${storeDir}"
-          "--localstatedir=${stateDir}"
-          "--sysconfdir=${confDir}"
-          "--disable-init-state"
-          "--enable-gc"
-        ]
-        ++ lib.optionals stdenv.isLinux [
-          "--with-sandbox-shell=${sandbox-shell}"
-        ]
-        ++ lib.optional (
-            stdenv.hostPlatform != stdenv.buildPlatform && stdenv.hostPlatform ? nix && stdenv.hostPlatform.nix ? system
-        ) ''--with-system=${stdenv.hostPlatform.nix.system}''
-           # RISC-V support in progress https://github.com/seccomp/libseccomp/pull/50
-        ++ lib.optional (!withLibseccomp) "--disable-seccomp-sandboxing";
-
-      makeFlags = [ "profiledir=$(out)/etc/profile.d" ]
-        ++ lib.optional (stdenv.hostPlatform != stdenv.buildPlatform) "PRECOMPILE_HEADERS=0";
-
-      installFlags = [ "sysconfdir=$(out)/etc" ];
-
-      doInstallCheck = true; # not cross
-
-      # socket path becomes too long otherwise
-      preInstallCheck = lib.optional stdenv.isDarwin ''
-        export TMPDIR=$NIX_BUILD_TOP
-      '';
-
-      separateDebugInfo = stdenv.isLinux;
-
-      enableParallelBuilding = true;
-
-      meta = {
-        description = "Powerful package manager that makes package management reliable and reproducible";
-        longDescription = ''
-          Nix is a powerful package manager for Linux and other Unix systems that
-          makes package management reliable and reproducible. It provides atomic
-          upgrades and rollbacks, side-by-side installation of multiple versions of
-          a package, multi-user package management and easy setup of build
-          environments.
-        '';
-        homepage = "https://nixos.org/";
-        license = lib.licenses.lgpl2Plus;
-        maintainers = [ lib.maintainers.eelco ];
-        platforms = lib.platforms.unix;
-        outputsToInstall = [ "out" "man" ];
-      };
-
-      passthru = {
-        perl-bindings = stdenv.mkDerivation {
-          pname = "nix-perl";
-          inherit version;
-
-          inherit src;
-
-          postUnpack = "sourceRoot=$sourceRoot/perl";
-
-          # This is not cross-compile safe, don't have time to fix right now
-          # but noting for future travellers.
-          nativeBuildInputs =
-            [ perl pkg-config curl nix libsodium boost autoreconfHook autoconf-archive ];
-
-          configureFlags =
-            [ "--with-dbi=${perlPackages.DBI}/${perl.libPrefix}"
-              "--with-dbd-sqlite=${perlPackages.DBDSQLite}/${perl.libPrefix}"
-            ];
-
-          preConfigure = "export NIX_STATE_DIR=$TMPDIR";
-
-          preBuild = "unset NIX_INDENT_MAKE";
-        };
-      };
-    };
-  in nix;
-
-in rec {
-
-  nix = nixStable;
-
-  nixStable = callPackage common (rec {
-    name = "nix-2.3.7";
-    src = fetchurl {
-      url = "https://nixos.org/releases/nix/${name}/${name}.tar.xz";
-      sha256 = "dd8f52849414e5a878afe7e797aa4e22bab77c875d9da5a38d5f1bada704e596";
-    };
-
-    inherit storeDir stateDir confDir boehmgc;
-  } // lib.optionalAttrs stdenv.cc.isClang {
-    stdenv = llvmPackages_6.stdenv;
-  });
-
-  nixUnstable = lib.lowPrio (callPackage common rec {
-    name = "nix-2.4${suffix}";
-    suffix = "pre20200721_ff314f1";
-
-    src = fetchFromGitHub {
-      owner = "NixOS";
-      repo = "nix";
-      rev = "ff314f186e3f91d87af6ad96c0ae3b472494b940";
-      hash = "sha256-QibpLo4/gf2xYGoeQcgjZzH/qy5TBRVH+QCHgqOwur0=";
-    };
-
-    inherit storeDir stateDir confDir boehmgc;
-  });
-
-  nixFlakes = nixUnstable;
-
-}

pkgs/nix/upload.sh

@@ -1,17 +0,0 @@
-#!/bin/bash
-
-# This post build hook sends the closure of the just built derivation to the
-# target machine. In our case this is the MareNostrum4 cluster.
-
-# set -e fails as the profile runs some erroring programs
-# We need the profile to load nix in the $PATH
-. /etc/profile
-
-set -eu
-set -f # disable globbing
-export IFS=' '
-nixroot=/gpfs/projects/bsc15/nix
-store=$nixroot/nix/store
-target=ssh://mn
-
-nix copy --to $target $OUT_PATHS