2 Commits

Author SHA1 Message Date
e9754aa8d7 Add meta to packages
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2025-10-10 12:47:05 +02:00
aa72d04a83 Add maintainers 2025-10-10 12:45:52 +02:00
63 changed files with 224 additions and 1235 deletions

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@@ -1,30 +0,0 @@
# Maintainers
## Role of a maintainer
The responsibilities of maintainers are quite lax, and similar in spirit to
[nixpkgs' maintainers][1]:
The main responsibility of a maintainer is to keep the packages they
maintain in a functioning state, and keep up with updates. In order to do
that, they are empowered to make decisions over the packages they maintain.
That being said, the maintainer is not alone in proposing changes to the
packages. Anybody (both bots and humans) can send PRs to bump or tweak the
package.
In practice, this means that when updating or proposing changes to a package,
we will notify maintainers by mentioning them in Gitea so they can test changes
and give feedback.
Since we do bi-yearly release cycles, there is no expectation from maintainers
to update packages at each upstream release. Nevertheless, on each release cycle
we may request help from maintainers when updating or testing their packages.
## Becoming a maintainer
You'll have to add yourself in the `maintainers.nix` list; your username should
match your `bsc.es` email. Then you can add yourself to the `meta.maintainers`
of any package you are interested in maintaining.
[1]: [https://github.com/NixOS/nixpkgs/tree/nixos-25.05/maintainers]

90
flake.lock generated
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@@ -1,25 +1,107 @@
{
"nodes": {
"agenix": {
"inputs": {
"darwin": "darwin",
"home-manager": "home-manager",
"nixpkgs": [
"nixpkgs"
],
"systems": "systems"
},
"locked": {
"lastModified": 1750173260,
"narHash": "sha256-9P1FziAwl5+3edkfFcr5HeGtQUtrSdk/MksX39GieoA=",
"owner": "ryantm",
"repo": "agenix",
"rev": "531beac616433bac6f9e2a19feb8e99a22a66baf",
"type": "github"
},
"original": {
"owner": "ryantm",
"repo": "agenix",
"type": "github"
}
},
"darwin": {
"inputs": {
"nixpkgs": [
"agenix",
"nixpkgs"
]
},
"locked": {
"lastModified": 1744478979,
"narHash": "sha256-dyN+teG9G82G+m+PX/aSAagkC+vUv0SgUw3XkPhQodQ=",
"owner": "lnl7",
"repo": "nix-darwin",
"rev": "43975d782b418ebf4969e9ccba82466728c2851b",
"type": "github"
},
"original": {
"owner": "lnl7",
"ref": "master",
"repo": "nix-darwin",
"type": "github"
}
},
"home-manager": {
"inputs": {
"nixpkgs": [
"agenix",
"nixpkgs"
]
},
"locked": {
"lastModified": 1745494811,
"narHash": "sha256-YZCh2o9Ua1n9uCvrvi5pRxtuVNml8X2a03qIFfRKpFs=",
"owner": "nix-community",
"repo": "home-manager",
"rev": "abfad3d2958c9e6300a883bd443512c55dfeb1be",
"type": "github"
},
"original": {
"owner": "nix-community",
"repo": "home-manager",
"type": "github"
}
},
"nixpkgs": {
"locked": {
"lastModified": 1767634882,
"narHash": "sha256-2GffSfQxe3sedHzK+sTKlYo/NTIAGzbFCIsNMUPAAnk=",
"lastModified": 1752436162,
"narHash": "sha256-Kt1UIPi7kZqkSc5HVj6UY5YLHHEzPBkgpNUByuyxtlw=",
"owner": "NixOS",
"repo": "nixpkgs",
"rev": "3c9db02515ef1d9b6b709fc60ba9a540957f661c",
"rev": "dfcd5b901dbab46c9c6e80b265648481aafb01f8",
"type": "github"
},
"original": {
"owner": "NixOS",
"ref": "nixos-25.11",
"ref": "nixos-25.05",
"repo": "nixpkgs",
"type": "github"
}
},
"root": {
"inputs": {
"agenix": "agenix",
"nixpkgs": "nixpkgs"
}
},
"systems": {
"locked": {
"lastModified": 1681028828,
"narHash": "sha256-Vy1rq5AaRuLzOxct8nz4T6wlgyUR7zLU309k9mBC768=",
"owner": "nix-systems",
"repo": "default",
"rev": "da67096a3b9bf56a91d16901293e51ba5b49a27e",
"type": "github"
},
"original": {
"owner": "nix-systems",
"repo": "default",
"type": "github"
}
}
},
"root": "root",

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@@ -1,13 +1,15 @@
{
inputs = {
nixpkgs.url = "github:NixOS/nixpkgs/nixos-25.11";
nixpkgs.url = "github:NixOS/nixpkgs/nixos-25.05";
agenix.url = "github:ryantm/agenix";
agenix.inputs.nixpkgs.follows = "nixpkgs";
};
outputs = { self, nixpkgs, ... }:
outputs = { self, nixpkgs, agenix, ... }:
let
mkConf = name: nixpkgs.lib.nixosSystem {
system = "x86_64-linux";
specialArgs = { inherit nixpkgs; theFlake = self; };
specialArgs = { inherit nixpkgs agenix; theFlake = self; };
modules = [ "${self.outPath}/m/${name}/configuration.nix" ];
};
# For now we only support x86

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@@ -57,18 +57,6 @@
};
};
services.fail2ban = {
enable = true;
maxretry = 5;
bantime-increment = {
enable = true; # Double ban time on each attack
maxtime = "7d"; # Ban up to a week
};
};
# Disable SSH login with password, allow only keypair
services.openssh.settings.PasswordAuthentication = false;
networking.firewall = {
extraCommands = ''
# Blackhole BSC vulnerability scanner (OpenVAS) as it is spamming our

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@@ -24,7 +24,7 @@
address = "10.0.40.40";
prefixLength = 24;
} ];
interfaces.ibs785.ipv4.addresses = [ {
interfaces.ibp5s0.ipv4.addresses = [ {
address = "10.0.42.40";
prefixLength = 24;
} ];

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@@ -1,8 +1,9 @@
{ pkgs, ... }:
{ agenix, ... }:
{
imports = [ ../../module/agenix.nix ];
imports = [ agenix.nixosModules.default ];
# Add agenix to system packages
environment.systemPackages = [ pkgs.agenix ];
environment.systemPackages = [
agenix.packages.x86_64-linux.default
];
}

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@@ -1,36 +1,11 @@
{ pkgs, ... }:
{ pkgs, config, ... }:
{
environment.systemPackages = with pkgs; [
cmake
ethtool
file
freeipmi
git
gnumake
home-manager
htop
ipmitool
ldns
lm_sensors
ncdu
nix-diff
nix-index
nix-output-monitor
nixfmt-tree
nixos-option
pciutils
perf
pv
ripgrep
tcpdump
tmux
tree
vim
wget
# From jungle overlay
nixgen
vim wget git htop tmux pciutils tcpdump ripgrep nix-index nixos-option
nix-diff ipmitool freeipmi ethtool lm_sensors cmake gnumake file tree
ncdu config.boot.kernelPackages.perf ldns pv
# From bsckgs overlay
osumb
];

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@@ -139,7 +139,6 @@
openssh.authorizedKeys.keys = [
"ssh-ed25519 AAAAC3NzaC1lZDI1NTE5AAAAIKGt0ESYxekBiHJQowmKpfdouw0hVm3N7tUMtAaeLejK vincent@varch"
];
shell = pkgs.zsh;
};
pmartin1 = {
@@ -181,32 +180,6 @@
"ssh-ed25519 AAAAC3NzaC1lZDI1NTE5AAAAIFmMqKqPg4uocNOr3O41kLbZMOMJn3m2ZdN1JvTR96z3 bsccns@arnau-bsc"
];
};
aaguirre = {
uid = 9655;
isNormalUser = true;
home = "/home/Computational/aaguirre";
description = "Alejandro Aguirre";
group = "Computational";
hosts = [ "apex" "hut" ];
hashedPassword = "$6$TXRXQT6jjBvxkxU6$E.sh5KspAm1qeG5Ct7OPHpo8REmbGDwjFGvqeGgTVz3GASGOAnPL7UMZsMAsAKBoahOw.v8LNno6XGrTEPzZH1";
openssh.authorizedKeys.keys = [
"ssh-ed25519 AAAAC3NzaC1lZDI1NTE5AAAAIOlRX7ZCnqtUJYCxKgWmgSrFCYuA2LHY96rVwqxXPl86 aaguirre@BSC-8488184117"
];
};
emonteir = {
uid = 9656;
isNormalUser = true;
home = "/home/Computational/emonteir";
description = "Erwin Royson Monteiro";
group = "Computational";
hosts = [ "apex" "fox" ];
hashedPassword = "$6$0mU88zd3ZuK5NiJQ$DFWL5RMLH6esQM5UyhBCiiNryw4lDDmvJp7Usz3tmevnsiSJr6u0RsUKAnR/K8GRBFrV1.GocrgNjKjik5GY//";
openssh.authorizedKeys.keys = [
"ssh-ed25519 AAAAC3NzaC1lZDI1NTE5AAAAIOKZKot/Y3F5Wq9pQIXlCbyvQuVVeWMCsAC96Nd+LTcG erwin@Oreo"
];
};
};
groups = {

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@@ -5,5 +5,5 @@
boot.kernelModules = [ "ipmi_watchdog" ];
# Enable systemd watchdog with 30 s interval
systemd.settings.Manager.RuntimeWatchdogSec = 30;
systemd.watchdog.runtimeTime = "30s";
}

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@@ -1,6 +1,11 @@
{ pkgs, lib, ... }:
{ config, pkgs, lib, ... }:
{
# add the perf tool
environment.systemPackages = with pkgs; [
config.boot.kernelPackages.perf
];
# allow non-root users to read tracing data from the kernel
boot.kernel.sysctl."kernel.perf_event_paranoid" = -2;
boot.kernel.sysctl."kernel.kptr_restrict" = 0;

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@@ -93,4 +93,20 @@
wantedBy = [ "multi-user.target" ];
serviceConfig.ExecStart = script;
};
# Only allow SSH connections from users who have a SLURM allocation
# See: https://slurm.schedmd.com/pam_slurm_adopt.html
security.pam.services.sshd.rules.account.slurm = {
control = "required";
enable = true;
modulePath = "${pkgs.slurm}/lib/security/pam_slurm_adopt.so";
args = [ "log_level=debug5" ];
order = 999999; # Make it last one
};
# Disable systemd session (pam_systemd.so) as it will conflict with the
# pam_slurm_adopt.so module. What happens is that the shell is first adopted
# into the slurmstepd task and then into the systemd session, which is not
# what we want, otherwise it will linger even if all jobs are gone.
security.pam.services.sshd.startSession = lib.mkForce false;
}

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@@ -17,7 +17,6 @@
./postgresql.nix
./nginx.nix
./p.nix
./ompss2-timer.nix
#./pxe.nix
];
@@ -45,7 +44,7 @@
address = "10.0.40.7";
prefixLength = 24;
} ];
interfaces.ibs785.ipv4.addresses = [ {
interfaces.ibp5s0.ipv4.addresses = [ {
address = "10.0.42.7";
prefixLength = 24;
} ];

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@@ -29,9 +29,6 @@
};
};
# Allow gitea user to send mail
users.users.gitea.extraGroups = [ "mail-robot" ];
services.gitea-actions-runner.instances = {
runrun = {
enable = true;

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@@ -1,11 +1,8 @@
{ config, lib, ... }:
{
# Robot user that can see the password to send mail from jungle-robot
users.groups.mail-robot = {};
age.secrets.jungleRobotPassword = {
file = ../../secrets/jungle-robot-password.age;
group = "mail-robot";
group = "gitea";
mode = "440";
};

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@@ -4,8 +4,8 @@ let
name = "jungle-web";
src = pkgs.fetchgit {
url = "https://jungle.bsc.es/git/rarias/jungle-website.git";
rev = "5f18335d14126d2fef134c0cd441771436f7dfa1";
hash = "sha256-s9VBF91sQ7hg9+lrwNFPYgoXTTyXaQcAulCiGJgWERo=";
rev = "739bf0175a7f05380fe7ad7023ff1d60db1710e1";
hash = "sha256-ea5DzhYTzZ9TmqD+x95rdNdLbxPnBluqlYH2NmBYmc4=";
};
buildInputs = [ pkgs.hugo ];
buildPhase = ''

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@@ -1,85 +0,0 @@
{ config, pkgs, ... }:
{
systemd.timers = {
"ompss2-closing" = {
wantedBy = [ "timers.target" ];
timerConfig = {
Unit = "ompss2-closing.service";
OnCalendar = [ "*-03-15 07:00:00" "*-09-15 07:00:00"];
};
};
"ompss2-freeze" = {
wantedBy = [ "timers.target" ];
timerConfig = {
Unit = "ompss2-freeze.service";
OnCalendar = [ "*-04-15 07:00:00" "*-10-15 07:00:00" ];
};
};
"ompss2-release" = {
wantedBy = [ "timers.target" ];
timerConfig = {
Unit = "ompss2-release.service";
OnCalendar = [ "*-05-15 07:00:00" "*-11-15 07:00:00" ];
};
};
};
systemd.services =
let
closing = pkgs.writeText "closing.txt"
''
Subject: OmpSs-2 release enters closing period
Hi,
You have one month to merge the remaining features for the next OmpSs-2
release. Please, identify what needs to be merged and discuss it in the next
OmpSs-2 meeting.
Thanks!,
Jungle robot
'';
freeze = pkgs.writeText "freeze.txt"
''
Subject: OmpSs-2 release enters freeze period
Hi,
The period to introduce new features or breaking changes is over, only bug
fixes are allowed now. During this time, please prepare the release notes
to be included in the next OmpSs-2 release.
Thanks!,
Jungle robot
'';
release = pkgs.writeText "release.txt"
''
Subject: OmpSs-2 release now
Hi,
The period to introduce bug fixes is now over. Please, proceed to do the
OmpSs-2 release.
Thanks!,
Jungle robot
'';
mkServ = name: mail: {
"ompss2-${name}" = {
script = ''
set -eu
set -o pipefail
cat ${mail} | ${config.security.wrapperDir}/sendmail star@bsc.es
'';
serviceConfig = {
Type = "oneshot";
DynamicUser = true;
Group = "mail-robot";
};
};
};
in
(mkServ "closing" closing) //
(mkServ "freeze" freeze) //
(mkServ "release" release);
}

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@@ -46,7 +46,7 @@
address = "10.0.40.42";
prefixLength = 24;
} ];
interfaces.ibs785.ipv4.addresses = [ {
interfaces.ibp5s0.ipv4.addresses = [ {
address = "10.0.42.42";
prefixLength = 24;
} ];

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@@ -1,357 +0,0 @@
{
config,
options,
lib,
pkgs,
...
}:
with lib;
let
cfg = config.age;
isDarwin = lib.attrsets.hasAttrByPath [ "environment" "darwinConfig" ] options;
ageBin = config.age.ageBin;
users = config.users.users;
sysusersEnabled =
if isDarwin then
false
else
options.systemd ? sysusers && (config.systemd.sysusers.enable || config.services.userborn.enable);
mountCommand =
if isDarwin then
''
if ! diskutil info "${cfg.secretsMountPoint}" &> /dev/null; then
num_sectors=1048576
dev=$(hdiutil attach -nomount ram://"$num_sectors" | sed 's/[[:space:]]*$//')
newfs_hfs -v agenix "$dev"
mount -t hfs -o nobrowse,nodev,nosuid,-m=0751 "$dev" "${cfg.secretsMountPoint}"
fi
''
else
''
grep -q "${cfg.secretsMountPoint} ramfs" /proc/mounts ||
mount -t ramfs none "${cfg.secretsMountPoint}" -o nodev,nosuid,mode=0751
'';
newGeneration = ''
_agenix_generation="$(basename "$(readlink ${cfg.secretsDir})" || echo 0)"
(( ++_agenix_generation ))
echo "[agenix] creating new generation in ${cfg.secretsMountPoint}/$_agenix_generation"
mkdir -p "${cfg.secretsMountPoint}"
chmod 0751 "${cfg.secretsMountPoint}"
${mountCommand}
mkdir -p "${cfg.secretsMountPoint}/$_agenix_generation"
chmod 0751 "${cfg.secretsMountPoint}/$_agenix_generation"
'';
chownGroup = if isDarwin then "admin" else "keys";
# chown the secrets mountpoint and the current generation to the keys group
# instead of leaving it root:root.
chownMountPoint = ''
chown :${chownGroup} "${cfg.secretsMountPoint}" "${cfg.secretsMountPoint}/$_agenix_generation"
'';
setTruePath = secretType: ''
${
if secretType.symlink then
''
_truePath="${cfg.secretsMountPoint}/$_agenix_generation/${secretType.name}"
''
else
''
_truePath="${secretType.path}"
''
}
'';
installSecret = secretType: ''
${setTruePath secretType}
echo "decrypting '${secretType.file}' to '$_truePath'..."
TMP_FILE="$_truePath.tmp"
IDENTITIES=()
for identity in ${toString cfg.identityPaths}; do
test -r "$identity" || continue
test -s "$identity" || continue
IDENTITIES+=(-i)
IDENTITIES+=("$identity")
done
test "''${#IDENTITIES[@]}" -eq 0 && echo "[agenix] WARNING: no readable identities found!"
mkdir -p "$(dirname "$_truePath")"
[ "${secretType.path}" != "${cfg.secretsDir}/${secretType.name}" ] && mkdir -p "$(dirname "${secretType.path}")"
(
umask u=r,g=,o=
test -f "${secretType.file}" || echo '[agenix] WARNING: encrypted file ${secretType.file} does not exist!'
test -d "$(dirname "$TMP_FILE")" || echo "[agenix] WARNING: $(dirname "$TMP_FILE") does not exist!"
LANG=${
config.i18n.defaultLocale or "C"
} ${ageBin} --decrypt "''${IDENTITIES[@]}" -o "$TMP_FILE" "${secretType.file}"
)
chmod ${secretType.mode} "$TMP_FILE"
mv -f "$TMP_FILE" "$_truePath"
${optionalString secretType.symlink ''
[ "${secretType.path}" != "${cfg.secretsDir}/${secretType.name}" ] && ln -sfT "${cfg.secretsDir}/${secretType.name}" "${secretType.path}"
''}
'';
testIdentities = map (path: ''
test -f ${path} || echo '[agenix] WARNING: config.age.identityPaths entry ${path} not present!'
'') cfg.identityPaths;
cleanupAndLink = ''
_agenix_generation="$(basename "$(readlink ${cfg.secretsDir})" || echo 0)"
(( ++_agenix_generation ))
echo "[agenix] symlinking new secrets to ${cfg.secretsDir} (generation $_agenix_generation)..."
ln -sfT "${cfg.secretsMountPoint}/$_agenix_generation" ${cfg.secretsDir}
(( _agenix_generation > 1 )) && {
echo "[agenix] removing old secrets (generation $(( _agenix_generation - 1 )))..."
rm -rf "${cfg.secretsMountPoint}/$(( _agenix_generation - 1 ))"
}
'';
installSecrets = builtins.concatStringsSep "\n" (
[ "echo '[agenix] decrypting secrets...'" ]
++ testIdentities
++ (map installSecret (builtins.attrValues cfg.secrets))
++ [ cleanupAndLink ]
);
chownSecret = secretType: ''
${setTruePath secretType}
chown ${secretType.owner}:${secretType.group} "$_truePath"
'';
chownSecrets = builtins.concatStringsSep "\n" (
[ "echo '[agenix] chowning...'" ]
++ [ chownMountPoint ]
++ (map chownSecret (builtins.attrValues cfg.secrets))
);
secretType = types.submodule (
{ config, ... }:
{
options = {
name = mkOption {
type = types.str;
default = config._module.args.name;
defaultText = literalExpression "config._module.args.name";
description = ''
Name of the file used in {option}`age.secretsDir`
'';
};
file = mkOption {
type = types.path;
description = ''
Age file the secret is loaded from.
'';
};
path = mkOption {
type = types.str;
default = "${cfg.secretsDir}/${config.name}";
defaultText = literalExpression ''
"''${cfg.secretsDir}/''${config.name}"
'';
description = ''
Path where the decrypted secret is installed.
'';
};
mode = mkOption {
type = types.str;
default = "0400";
description = ''
Permissions mode of the decrypted secret in a format understood by chmod.
'';
};
owner = mkOption {
type = types.str;
default = "0";
description = ''
User of the decrypted secret.
'';
};
group = mkOption {
type = types.str;
default = users.${config.owner}.group or "0";
defaultText = literalExpression ''
users.''${config.owner}.group or "0"
'';
description = ''
Group of the decrypted secret.
'';
};
symlink = mkEnableOption "symlinking secrets to their destination" // {
default = true;
};
};
}
);
in
{
imports = [
(mkRenamedOptionModule [ "age" "sshKeyPaths" ] [ "age" "identityPaths" ])
];
options.age = {
ageBin = mkOption {
type = types.str;
default = "${pkgs.age}/bin/age";
defaultText = literalExpression ''
"''${pkgs.age}/bin/age"
'';
description = ''
The age executable to use.
'';
};
secrets = mkOption {
type = types.attrsOf secretType;
default = { };
description = ''
Attrset of secrets.
'';
};
secretsDir = mkOption {
type = types.path;
default = "/run/agenix";
description = ''
Folder where secrets are symlinked to
'';
};
secretsMountPoint = mkOption {
type =
types.addCheck types.str (
s:
(builtins.match "[ \t\n]*" s) == null # non-empty
&& (builtins.match ".+/" s) == null
) # without trailing slash
// {
description = "${types.str.description} (with check: non-empty without trailing slash)";
};
default = "/run/agenix.d";
description = ''
Where secrets are created before they are symlinked to {option}`age.secretsDir`
'';
};
identityPaths = mkOption {
type = types.listOf types.path;
default =
if isDarwin then
[
"/etc/ssh/ssh_host_ed25519_key"
"/etc/ssh/ssh_host_rsa_key"
]
else if (config.services.openssh.enable or false) then
map (e: e.path) (
lib.filter (e: e.type == "rsa" || e.type == "ed25519") config.services.openssh.hostKeys
)
else
[ ];
defaultText = literalExpression ''
if isDarwin
then [
"/etc/ssh/ssh_host_ed25519_key"
"/etc/ssh/ssh_host_rsa_key"
]
else if (config.services.openssh.enable or false)
then map (e: e.path) (lib.filter (e: e.type == "rsa" || e.type == "ed25519") config.services.openssh.hostKeys)
else [];
'';
description = ''
Path to SSH keys to be used as identities in age decryption.
'';
};
};
config = mkIf (cfg.secrets != { }) (mkMerge [
{
assertions = [
{
assertion = cfg.identityPaths != [ ];
message = "age.identityPaths must be set, for example by enabling openssh.";
}
];
}
(optionalAttrs (!isDarwin) {
# When using sysusers we no longer be started as an activation script
# because those are started in initrd while sysusers is started later.
systemd.services.agenix-install-secrets = mkIf sysusersEnabled {
wantedBy = [ "sysinit.target" ];
after = [ "systemd-sysusers.service" ];
unitConfig.DefaultDependencies = "no";
path = [ pkgs.mount ];
serviceConfig = {
Type = "oneshot";
ExecStart = pkgs.writeShellScript "agenix-install" (concatLines [
newGeneration
installSecrets
chownSecrets
]);
RemainAfterExit = true;
};
};
# Create a new directory full of secrets for symlinking (this helps
# ensure removed secrets are actually removed, or at least become
# invalid symlinks).
system.activationScripts = mkIf (!sysusersEnabled) {
agenixNewGeneration = {
text = newGeneration;
deps = [
"specialfs"
];
};
agenixInstall = {
text = installSecrets;
deps = [
"agenixNewGeneration"
"specialfs"
];
};
# So user passwords can be encrypted.
users.deps = [ "agenixInstall" ];
# Change ownership and group after users and groups are made.
agenixChown = {
text = chownSecrets;
deps = [
"users"
"groups"
];
};
# So other activation scripts can depend on agenix being done.
agenix = {
text = "";
deps = [ "agenixChown" ];
};
};
})
(optionalAttrs isDarwin {
launchd.daemons.activate-agenix = {
script = ''
set -e
set -o pipefail
export PATH="${pkgs.gnugrep}/bin:${pkgs.coreutils}/bin:@out@/sw/bin:/usr/bin:/bin:/usr/sbin:/sbin"
${newGeneration}
${installSecrets}
${chownSecrets}
exit 0
'';
serviceConfig = {
RunAtLoad = true;
KeepAlive.SuccessfulExit = false;
};
};
})
]);
}

View File

@@ -1,10 +1,3 @@
{
services.nixseparatedebuginfod2 = {
enable = true;
substituters = [
"local:"
"https://cache.nixos.org"
"http://hut/cache"
];
};
services.nixseparatedebuginfod.enable = true;
}

View File

@@ -1,4 +1,4 @@
{ lib, pkgs, ... }:
{ lib, ... }:
{
imports = [
@@ -21,20 +21,4 @@
};
services.slurm.client.enable = true;
# Only allow SSH connections from users who have a SLURM allocation
# See: https://slurm.schedmd.com/pam_slurm_adopt.html
security.pam.services.sshd.rules.account.slurm = {
control = "required";
enable = true;
modulePath = "${pkgs.slurm}/lib/security/pam_slurm_adopt.so";
args = [ "log_level=debug5" ];
order = 999999; # Make it last one
};
# Disable systemd session (pam_systemd.so) as it will conflict with the
# pam_slurm_adopt.so module. What happens is that the shell is first adopted
# into the slurmstepd task and then into the systemd session, which is not
# what we want, otherwise it will linger even if all jobs are gone.
security.pam.services.sshd.startSession = lib.mkForce false;
}

View File

@@ -1,6 +1,31 @@
{ config, pkgs, ... }:
{
let
suspendProgram = pkgs.writeShellScript "suspend.sh" ''
exec 1>>/var/log/power_save.log 2>>/var/log/power_save.log
set -x
export "PATH=/run/current-system/sw/bin:$PATH"
echo "$(date) Suspend invoked $0 $*" >> /var/log/power_save.log
hosts=$(scontrol show hostnames $1)
for host in $hosts; do
echo Shutting down host: $host
ipmitool -I lanplus -H ''${host}-ipmi -P "" -U "" chassis power off
done
'';
resumeProgram = pkgs.writeShellScript "resume.sh" ''
exec 1>>/var/log/power_save.log 2>>/var/log/power_save.log
set -x
export "PATH=/run/current-system/sw/bin:$PATH"
echo "$(date) Suspend invoked $0 $*" >> /var/log/power_save.log
hosts=$(scontrol show hostnames $1)
for host in $hosts; do
echo Starting host: $host
ipmitool -I lanplus -H ''${host}-ipmi -P "" -U "" chassis power on
done
'';
in {
services.slurm = {
controlMachine = "apex";
clusterName = "jungle";
@@ -34,6 +59,16 @@
# the resources. Use the task/cgroup plugin to enable process containment.
TaskPlugin=task/affinity,task/cgroup
# Power off unused nodes until they are requested
SuspendProgram=${suspendProgram}
SuspendTimeout=60
ResumeProgram=${resumeProgram}
ResumeTimeout=300
SuspendExcNodes=fox
# Turn the nodes off after 1 hour of inactivity
SuspendTime=3600
# Reduce port range so we can allow only this range in the firewall
SrunPortRange=60000-61000
@@ -51,7 +86,9 @@
# when a task runs (srun) so we can ssh early.
PrologFlags=Alloc,Contain,X11
LaunchParameters=use_interactive_step
# LaunchParameters=ulimit_pam_adopt will set RLIMIT_RSS in processes
# adopted by the external step, similar to tasks running in regular steps
# LaunchParameters=ulimit_pam_adopt
SlurmdDebug=debug5
#DebugFlags=Protocol,Cgroup
'';

View File

@@ -1,27 +0,0 @@
{ lib, pkgs, ... }:
{
# Allow user access to FTDI USB device
services.udev.packages = lib.singleton (pkgs.writeTextFile {
# Needs to be < 73
name = "60-ftdi-tc1.rules";
text = ''
# Bus 003 Device 003: ID 0403:6011 Future Technology Devices International, Ltd FT4232H Quad HS USB-UART/FIFO IC
# Use := to make sure it doesn't get changed later
SUBSYSTEMS=="usb", ATTRS{idVendor}=="0403", ATTRS{idProduct}=="6011", MODE:="0666"
'';
destination = "/etc/udev/rules.d/60-ftdi-tc1.rules";
});
# Allow access to USB for docker in GitLab runner
services.gitlab-runner = {
services.gitlab-bsc-docker = {
registrationFlags = [
# We need raw access to the USB port to reboot the board
"--docker-devices /dev/bus/usb/003/003"
# And TTY access for the serial port
"--docker-devices /dev/ttyUSB2"
];
};
};
}

View File

@@ -20,7 +20,7 @@
address = "10.0.40.1";
prefixLength = 24;
} ];
interfaces.ibs785.ipv4.addresses = [ {
interfaces.ibp5s0.ipv4.addresses = [ {
address = "10.0.42.1";
prefixLength = 24;
} ];

View File

@@ -21,7 +21,7 @@
prefixLength = 24;
} ];
# Watch out! The OmniPath device is not in the same place here:
interfaces.ibs801.ipv4.addresses = [ {
interfaces.ibp129s0.ipv4.addresses = [ {
address = "10.0.42.2";
prefixLength = 24;
} ];

View File

@@ -16,7 +16,6 @@
../module/p.nix
../module/vpn-dac.nix
../module/hut-substituter.nix
../module/tc1-board.nix
];
# Select the this using the ID to avoid mismatches

View File

@@ -27,7 +27,4 @@
};
};
};
# Allow gitea user to send mail
users.users.gitea.extraGroups = [ "mail-robot" ];
}

View File

@@ -4,8 +4,8 @@ let
name = "jungle-web";
src = pkgs.fetchgit {
url = "https://jungle.bsc.es/git/rarias/jungle-website.git";
rev = "5f18335d14126d2fef134c0cd441771436f7dfa1";
hash = "sha256-s9VBF91sQ7hg9+lrwNFPYgoXTTyXaQcAulCiGJgWERo=";
rev = "739bf0175a7f05380fe7ad7023ff1d60db1710e1";
hash = "sha256-ea5DzhYTzZ9TmqD+x95rdNdLbxPnBluqlYH2NmBYmc4=";
};
buildInputs = [ pkgs.hugo ];
buildPhase = ''

View File

@@ -7,7 +7,6 @@ let
callPackage = final.callPackage;
bscPkgs = {
agenix = prev.callPackage ./pkgs/agenix/default.nix { };
amd-uprof = prev.callPackage ./pkgs/amd-uprof/default.nix { };
bench6 = callPackage ./pkgs/bench6/default.nix { };
bigotes = callPackage ./pkgs/bigotes/default.nix { };
@@ -30,15 +29,13 @@ let
amd-uprof-driver = _prev.callPackage ./pkgs/amd-uprof/driver.nix { };
});
lmbench = callPackage ./pkgs/lmbench/default.nix { };
# Broken and unmantained
# mcxx = callPackage ./pkgs/mcxx/default.nix { };
mcxx = callPackage ./pkgs/mcxx/default.nix { };
meteocat-exporter = prev.callPackage ./pkgs/meteocat-exporter/default.nix { };
mpi = final.mpich; # Set MPICH as default
mpich = callPackage ./pkgs/mpich/default.nix { mpich = prev.mpich; };
nanos6 = callPackage ./pkgs/nanos6/default.nix { };
nanos6Debug = final.nanos6.override { enableDebug = true; };
nixtools = callPackage ./pkgs/nixtools/default.nix { };
nixgen = callPackage ./pkgs/nixgen/default.nix { };
# Broken because of pkgsStatic.libcap
# See: https://github.com/NixOS/nixpkgs/pull/268791
#nix-wrap = callPackage ./pkgs/nix-wrap/default.nix { };
@@ -53,7 +50,6 @@ let
prometheus-slurm-exporter = prev.callPackage ./pkgs/slurm-exporter/default.nix { };
#pscom = callPackage ./pkgs/parastation/pscom.nix { }; # Unmaintaned
#psmpi = callPackage ./pkgs/parastation/psmpi.nix { }; # Unmaintaned
slurm = import ./pkgs/slurm/default.nix { slurm = prev.slurm; };
sonar = callPackage ./pkgs/sonar/default.nix { };
stdenvClangOmpss2 = final.stdenv.override { cc = final.clangOmpss2; allowedRequisites = null; };
stdenvClangOmpss2Nanos6 = final.stdenv.override { cc = final.clangOmpss2Nanos6; allowedRequisites = null; };
@@ -102,16 +98,14 @@ let
pkgsTopLevel = filterAttrs (_: isDerivation) bscPkgs;
# Native build in that platform doesn't imply cross build works
canCrossCompile = platform: default: pkg:
canCrossCompile = platform: pkg:
(isDerivation pkg) &&
# If meta.cross is undefined, use default
(pkg.meta.cross or default) &&
(meta.availableOn final.pkgsCross.${platform}.stdenv.hostPlatform pkg);
# Must be defined explicitly
(pkg.meta.cross or false) &&
(meta.availableOn platform pkg);
# For now only RISC-V
crossSet = genAttrs [ "riscv64" ] (platform:
filterAttrs (_: canCrossCompile platform true)
final.pkgsCross.${platform}.bsc.pkgsTopLevel);
crossSet = { riscv64 = final.pkgsCross.riscv64.bsc.pkgsTopLevel; };
buildList = name: paths:
final.runCommandLocal name { } ''
@@ -131,7 +125,7 @@ let
# For now only RISC-V
crossList = buildList "ci-cross"
(filter
(canCrossCompile "riscv64" false) # opt-in (pkgs with: meta.cross = true)
(canCrossCompile final.pkgsCross.riscv64.stdenv.hostPlatform)
(builtins.attrValues crossSet.riscv64));
in bscPkgs // {

View File

@@ -1,212 +0,0 @@
#!/usr/bin/env bash
set -Eeuo pipefail
PACKAGE="agenix"
function show_help () {
echo "$PACKAGE - edit and rekey age secret files"
echo " "
echo "$PACKAGE -e FILE [-i PRIVATE_KEY]"
echo "$PACKAGE -r [-i PRIVATE_KEY]"
echo ' '
echo 'options:'
echo '-h, --help show help'
# shellcheck disable=SC2016
echo '-e, --edit FILE edits FILE using $EDITOR'
echo '-r, --rekey re-encrypts all secrets with specified recipients'
echo '-d, --decrypt FILE decrypts FILE to STDOUT'
echo '-i, --identity identity to use when decrypting'
echo '-v, --verbose verbose output'
echo ' '
echo 'FILE an age-encrypted file'
echo ' '
echo 'PRIVATE_KEY a path to a private SSH key used to decrypt file'
echo ' '
echo 'EDITOR environment variable of editor to use when editing FILE'
echo ' '
echo 'If STDIN is not interactive, EDITOR will be set to "cp /dev/stdin"'
echo ' '
echo 'RULES environment variable with path to Nix file specifying recipient public keys.'
echo "Defaults to './secrets.nix'"
echo ' '
echo "agenix version: @version@"
echo "age binary path: @ageBin@"
echo "age version: $(@ageBin@ --version)"
}
function warn() {
printf '%s\n' "$*" >&2
}
function err() {
warn "$*"
exit 1
}
test $# -eq 0 && (show_help && exit 1)
REKEY=0
DECRYPT_ONLY=0
DEFAULT_DECRYPT=(--decrypt)
while test $# -gt 0; do
case "$1" in
-h|--help)
show_help
exit 0
;;
-e|--edit)
shift
if test $# -gt 0; then
export FILE=$1
else
echo "no FILE specified"
exit 1
fi
shift
;;
-i|--identity)
shift
if test $# -gt 0; then
DEFAULT_DECRYPT+=(--identity "$1")
else
echo "no PRIVATE_KEY specified"
exit 1
fi
shift
;;
-r|--rekey)
shift
REKEY=1
;;
-d|--decrypt)
shift
DECRYPT_ONLY=1
if test $# -gt 0; then
export FILE=$1
else
echo "no FILE specified"
exit 1
fi
shift
;;
-v|--verbose)
shift
set -x
;;
*)
show_help
exit 1
;;
esac
done
RULES=${RULES:-./secrets.nix}
function cleanup {
if [ -n "${CLEARTEXT_DIR+x}" ]
then
rm -rf -- "$CLEARTEXT_DIR"
fi
if [ -n "${REENCRYPTED_DIR+x}" ]
then
rm -rf -- "$REENCRYPTED_DIR"
fi
}
trap "cleanup" 0 2 3 15
function keys {
(@nixInstantiate@ --json --eval --strict -E "(let rules = import $RULES; in rules.\"$1\".publicKeys)" | @jqBin@ -r .[]) || exit 1
}
function armor {
(@nixInstantiate@ --json --eval --strict -E "(let rules = import $RULES; in (builtins.hasAttr \"armor\" rules.\"$1\" && rules.\"$1\".armor))") || exit 1
}
function decrypt {
FILE=$1
KEYS=$2
if [ -z "$KEYS" ]
then
err "There is no rule for $FILE in $RULES."
fi
if [ -f "$FILE" ]
then
DECRYPT=("${DEFAULT_DECRYPT[@]}")
if [[ "${DECRYPT[*]}" != *"--identity"* ]]; then
if [ -f "$HOME/.ssh/id_rsa" ]; then
DECRYPT+=(--identity "$HOME/.ssh/id_rsa")
fi
if [ -f "$HOME/.ssh/id_ed25519" ]; then
DECRYPT+=(--identity "$HOME/.ssh/id_ed25519")
fi
fi
if [[ "${DECRYPT[*]}" != *"--identity"* ]]; then
err "No identity found to decrypt $FILE. Try adding an SSH key at $HOME/.ssh/id_rsa or $HOME/.ssh/id_ed25519 or using the --identity flag to specify a file."
fi
@ageBin@ "${DECRYPT[@]}" -- "$FILE" || exit 1
fi
}
function edit {
FILE=$1
KEYS=$(keys "$FILE") || exit 1
ARMOR=$(armor "$FILE") || exit 1
CLEARTEXT_DIR=$(@mktempBin@ -d)
CLEARTEXT_FILE="$CLEARTEXT_DIR/$(basename -- "$FILE")"
DEFAULT_DECRYPT+=(-o "$CLEARTEXT_FILE")
decrypt "$FILE" "$KEYS" || exit 1
[ ! -f "$CLEARTEXT_FILE" ] || cp -- "$CLEARTEXT_FILE" "$CLEARTEXT_FILE.before"
[ -t 0 ] || EDITOR='cp -- /dev/stdin'
$EDITOR "$CLEARTEXT_FILE"
if [ ! -f "$CLEARTEXT_FILE" ]
then
warn "$FILE wasn't created."
return
fi
[ -f "$FILE" ] && [ "$EDITOR" != ":" ] && @diffBin@ -q -- "$CLEARTEXT_FILE.before" "$CLEARTEXT_FILE" && warn "$FILE wasn't changed, skipping re-encryption." && return
ENCRYPT=()
if [[ "$ARMOR" == "true" ]]; then
ENCRYPT+=(--armor)
fi
while IFS= read -r key
do
if [ -n "$key" ]; then
ENCRYPT+=(--recipient "$key")
fi
done <<< "$KEYS"
REENCRYPTED_DIR=$(@mktempBin@ -d)
REENCRYPTED_FILE="$REENCRYPTED_DIR/$(basename -- "$FILE")"
ENCRYPT+=(-o "$REENCRYPTED_FILE")
@ageBin@ "${ENCRYPT[@]}" <"$CLEARTEXT_FILE" || exit 1
mkdir -p -- "$(dirname -- "$FILE")"
mv -f -- "$REENCRYPTED_FILE" "$FILE"
}
function rekey {
FILES=$( (@nixInstantiate@ --json --eval -E "(let rules = import $RULES; in builtins.attrNames rules)" | @jqBin@ -r .[]) || exit 1)
for FILE in $FILES
do
warn "rekeying $FILE..."
EDITOR=: edit "$FILE"
cleanup
done
}
[ $REKEY -eq 1 ] && rekey && exit 0
[ $DECRYPT_ONLY -eq 1 ] && DEFAULT_DECRYPT+=("-o" "-") && decrypt "${FILE}" "$(keys "$FILE")" && exit 0
edit "$FILE" && cleanup && exit 0

View File

@@ -1,66 +0,0 @@
{
lib,
stdenv,
age,
jq,
nix,
mktemp,
diffutils,
replaceVars,
ageBin ? "${age}/bin/age",
shellcheck,
}:
let
bin = "${placeholder "out"}/bin/agenix";
in
stdenv.mkDerivation rec {
pname = "agenix";
version = "0.15.0";
src = replaceVars ./agenix.sh {
inherit ageBin version;
jqBin = "${jq}/bin/jq";
nixInstantiate = "${nix}/bin/nix-instantiate";
mktempBin = "${mktemp}/bin/mktemp";
diffBin = "${diffutils}/bin/diff";
};
dontUnpack = true;
doInstallCheck = true;
installCheckInputs = [ shellcheck ];
postInstallCheck = ''
shellcheck ${bin}
${bin} -h | grep ${version}
test_tmp=$(mktemp -d 2>/dev/null || mktemp -d -t 'mytmpdir')
export HOME="$test_tmp/home"
export NIX_STORE_DIR="$test_tmp/nix/store"
export NIX_STATE_DIR="$test_tmp/nix/var"
mkdir -p "$HOME" "$NIX_STORE_DIR" "$NIX_STATE_DIR"
function cleanup {
rm -rf "$test_tmp"
}
trap "cleanup" 0 2 3 15
mkdir -p $HOME/.ssh
cp -r "${./example}" $HOME/secrets
chmod -R u+rw $HOME/secrets
(
umask u=rw,g=r,o=r
cp ${./example_keys/user1.pub} $HOME/.ssh/id_ed25519.pub
chown $UID $HOME/.ssh/id_ed25519.pub
)
(
umask u=rw,g=,o=
cp ${./example_keys/user1} $HOME/.ssh/id_ed25519
chown $UID $HOME/.ssh/id_ed25519
)
cd $HOME/secrets
test $(${bin} -d secret1.age) = "hello"
'';
installPhase = ''
install -D $src ${bin}
'';
meta.description = "age-encrypted secrets for NixOS";
}

View File

@@ -1,7 +0,0 @@
age-encryption.org/v1
-> ssh-ed25519 V3XmEA zirqdzZZ1E+sedBn7fbEHq4ntLEkokZ4GctarBBOHXY
Rvs5YHaAUeCZyNwPedubPcHClWYIuXXWA5zadXPWY6w
-> ssh-ed25519 KLPP8w BVp4rDkOYSQyn8oVeHFeinSqW+pdVtxBF9+5VM1yORY
bMwppAi8Nhz0328taU4AzUkTVyWtSLvFZG6c5W/Fs78
--- xCbqLhXAcOziO2wmbjTiSQfZvt5Rlsc4SCvF+iEzpQA
<EFBFBD>KB<EFBFBD><EFBFBD>/<2F>Z<><5A>r<EFBFBD>%<01><>4<EFBFBD><34><EFBFBD>Mq5<71><35>_<EFBFBD><5F>ݒ<><DD92><EFBFBD><EFBFBD><EFBFBD>11 ܨqM;& <20><>Lr<4C><72><EFBFBD>f<EFBFBD><66><EFBFBD>]>N

View File

@@ -1,7 +0,0 @@
-----BEGIN AGE ENCRYPTED FILE-----
YWdlLWVuY3J5cHRpb24ub3JnL3YxCi0+IHNzaC1lZDI1NTE5IFYzWG1FQSBpZkZW
aFpLNnJxc0VUMHRmZ2dZS0pjMGVENnR3OHd5K0RiT1RjRUhibFZBCnN5UG5vUjA3
SXpsNGtiVUw4T0tIVFo5Wkk5QS9NQlBndzVvektiQ0ozc0kKLS0tIGxyY1Q4dEZ1
VGZEanJyTFNta2JNRmpZb2FnK2JyS1hSVml1UGdMNWZKQXMKYla+wTXcRedyZoEb
LVWaSx49WoUTU0KBPJg9RArxaeC23GoCDzR/aM/1DvYU
-----END AGE ENCRYPTED FILE-----

View File

@@ -1,9 +0,0 @@
age-encryption.org/v1
-> ssh-ed25519 KLPP8w s1DYZRlZuSsyhmZCF1lFB+E9vB8bZ/+ZhBRlx8nprwE
nmYVCsVBrX2CFXXPU+D+bbkkIe/foofp+xoUrg9DHZw
-> ssh-ed25519 V3XmEA Pwv3oCwcY0DX8rY48UNfsj9RumWsn4dbgorYHCwObgI
FKxRYkL3JHtJxUwymWDF0rAtJ33BivDI6IfPsfumM90
-> V'v(/u$-grease em/Vgf 2qDuk
7I3iiQLPGi1COML9u/JeYkr7EqbSLoU
--- 57WJRigUGtmcObrssS3s4PvmR8wgh1AOC/ijJn1s3xI
<EFBFBD>'K<>ƷY&<26>7G<37>O<EFBFBD><4F>Fj<13>k<EFBFBD>X<EFBFBD><58>BnuJ<75><4A>:9<>(<><7F><EFBFBD>X<EFBFBD>#<23>A<EFBFBD><41><EFBFBD><EFBFBD>ڧj<DAA7>,<02>_<17><><EFBFBD>?<3F>Z<EFBFBD><17>v<EFBFBD><76>V<EFBFBD>96]oks~%<25>c <04>e^C<>%JQ5<51><H<>z}<7D>C<EFBFBD>,<2C>p<EFBFBD><70>*!W<><57><EFBFBD>A<EFBFBD><41><EFBFBD>҅dC<15>K)<10><>-<2D>y

Binary file not shown.

View File

@@ -1,5 +0,0 @@
age-encryption.org/v1
-> ssh-ed25519 V3XmEA OB4+1FbPhQ3r6iGksM7peWX5it8NClpXIq/o5nnP7GA
FmHVUj+A5i5+bDFgySQskmlvynnosJiWUTJmBRiNA9I
--- tP+3mFVtd7ogVu1Lkboh55zoi5a77Ht08Uc/QuIviv4
<EFBFBD><EFBFBD>X<EFBFBD>{<7B><>O<EFBFBD><4F><1F><04>tMXx<58>vӪ(<28>I<EFBFBD>myP<79><50><EFBFBD><EFBFBD>+3<>S3i

View File

@@ -1,23 +0,0 @@
let
user1 = "ssh-ed25519 AAAAC3NzaC1lZDI1NTE5AAAAIL0idNvgGiucWgup/mP78zyC23uFjYq0evcWdjGQUaBH";
system1 = "ssh-ed25519 AAAAC3NzaC1lZDI1NTE5AAAAIPJDyIr/FSz1cJdcoW69R+NrWzwGK/+3gJpqD1t8L2zE";
in
{
"secret1.age".publicKeys = [
user1
system1
];
"secret2.age".publicKeys = [ user1 ];
"passwordfile-user1.age".publicKeys = [
user1
system1
];
"-leading-hyphen-filename.age".publicKeys = [
user1
system1
];
"armored-secret.age" = {
publicKeys = [ user1 ];
armor = true;
};
}

View File

@@ -1,7 +0,0 @@
-----BEGIN OPENSSH PRIVATE KEY-----
b3BlbnNzaC1rZXktdjEAAAAABG5vbmUAAAAEbm9uZQAAAAAAAAABAAAAMwAAAAtzc2gtZW
QyNTUxOQAAACDyQ8iK/xUs9XCXXKFuvUfja1s8Biv/t4Caag9bfC9sxAAAAJA3yvCWN8rw
lgAAAAtzc2gtZWQyNTUxOQAAACDyQ8iK/xUs9XCXXKFuvUfja1s8Biv/t4Caag9bfC9sxA
AAAEA+J2V6AG1NriAIvnNKRauIEh1JE9HSdhvKJ68a5Fm0w/JDyIr/FSz1cJdcoW69R+Nr
WzwGK/+3gJpqD1t8L2zEAAAADHJ5YW50bUBob21lMQE=
-----END OPENSSH PRIVATE KEY-----

View File

@@ -1 +0,0 @@
ssh-ed25519 AAAAC3NzaC1lZDI1NTE5AAAAIPJDyIr/FSz1cJdcoW69R+NrWzwGK/+3gJpqD1t8L2zE

View File

@@ -1,7 +0,0 @@
-----BEGIN OPENSSH PRIVATE KEY-----
b3BlbnNzaC1rZXktdjEAAAAABG5vbmUAAAAEbm9uZQAAAAAAAAABAAAAMwAAAAtzc2gtZW
QyNTUxOQAAACC9InTb4BornFoLqf5j+/M8gtt7hY2KtHr3FnYxkFGgRwAAAJC2JJ8htiSf
IQAAAAtzc2gtZWQyNTUxOQAAACC9InTb4BornFoLqf5j+/M8gtt7hY2KtHr3FnYxkFGgRw
AAAEDxt5gC/s53IxiKAjfZJVCCcFIsdeERdIgbYhLO719+Kb0idNvgGiucWgup/mP78zyC
23uFjYq0evcWdjGQUaBHAAAADHJ5YW50bUBob21lMQE=
-----END OPENSSH PRIVATE KEY-----

View File

@@ -1 +0,0 @@
ssh-ed25519 AAAAC3NzaC1lZDI1NTE5AAAAIL0idNvgGiucWgup/mP78zyC23uFjYq0evcWdjGQUaBH

View File

@@ -1,23 +0,0 @@
#!/bin/sh
set -e
# All operations are done relative to root
GITROOT=$(git rev-parse --show-toplevel)
cd "$GITROOT"
REVISION=${1:-main}
TMPCLONE=$(mktemp -d)
trap "rm -rf ${TMPCLONE}" EXIT
git clone https://github.com/ryantm/agenix.git --revision="$REVISION" "$TMPCLONE" --depth=1
cp "${TMPCLONE}/pkgs/agenix.sh" pkgs/agenix/agenix.sh
cp "${TMPCLONE}/pkgs/agenix.nix" pkgs/agenix/default.nix
sed -i 's#../example#./example#' pkgs/agenix/default.nix
cp "${TMPCLONE}/example/"* pkgs/agenix/example/
cp "${TMPCLONE}/example_keys/"* pkgs/agenix/example_keys/
cp "${TMPCLONE}/modules/age.nix" m/module/agenix.nix

View File

@@ -90,7 +90,7 @@ in
meta = {
description = "Performance analysis tool-suite for x86 based applications";
homepage = "https://www.amd.com/es/developer/uprof.html";
platforms = [ "x86_64-linux" ];
platforms = lib.platforms.linux;
license = lib.licenses.unfree;
maintainers = with lib.maintainers.bsc; [ rarias varcila ];
};

View File

@@ -19,7 +19,7 @@ in stdenv.mkDerivation {
'';
hardeningDisable = [ "pic" "format" ];
nativeBuildInputs = kernel.moduleBuildDependencies;
patches = [ ./makefile.patch ./hrtimer.patch ./remove-wr-rdmsrq.patch ];
patches = [ ./makefile.patch ./hrtimer.patch ];
makeFlags = [
"KERNEL_VERSION=${kernel.modDirVersion}"
"KERNEL_DIR=${kernel.dev}/lib/modules/${kernel.modDirVersion}/build"

View File

@@ -1,20 +0,0 @@
diff --git a/inc/PwrProfAsm.h b/inc/PwrProfAsm.h
index d77770a..c93a0e9 100644
--- a/inc/PwrProfAsm.h
+++ b/inc/PwrProfAsm.h
@@ -347,6 +347,7 @@
#endif
+/*
#define rdmsrq(msr,val1,val2,val3,val4) ({ \
__asm__ __volatile__( \
"rdmsr\n" \
@@ -362,6 +363,7 @@
:"c"(msr), "a"(val1), "d"(val2), "S"(val3), "D"(val4) \
); \
})
+*/
#define rdmsrpw(msr,val1,val2,val3,val4) ({ \
__asm__ __volatile__( \

View File

@@ -1,6 +1,5 @@
{
stdenv
, lib
, cudatoolkit
, cudaPackages
, autoAddDriverRunpath
@@ -12,7 +11,7 @@ stdenv.mkDerivation (finalAttrs: {
src = ./.;
buildInputs = [
cudatoolkit # Required for nvcc
(lib.getOutput "static" cudaPackages.cuda_cudart) # Required for -lcudart_static
cudaPackages.cuda_cudart.static # Required for -lcudart_static
autoAddDriverRunpath
];
installPhase = ''
@@ -41,9 +40,4 @@ stdenv.mkDerivation (finalAttrs: {
'';
installPhase = "touch $out";
};
meta = {
platforms = [ "x86_64-linux" ];
maintainers = with lib.maintainers.bsc; [ rarias ];
};
})

View File

@@ -9,6 +9,7 @@
, automake
, libtool
, mpi
, rsync
, gfortran
}:
@@ -43,24 +44,13 @@ stdenv.mkDerivation rec {
configureFlags = [
"--with-infiniband=${rdma-core-all}"
"--with-mpi=yes" # fixes mpi detection when cross-compiling
"--with-mpi=${mpiAll}"
"--with-slurm"
"CFLAGS=-fPIC"
"CXXFLAGS=-fPIC"
];
nativeBuildInputs = [
autoconf
automake
gfortran
libtool
];
buildInputs = [
slurm
mpiAll
rdma-core-all
];
buildInputs = [ slurm mpiAll rdma-core-all autoconf automake libtool rsync gfortran ];
hardeningDisable = [ "all" ];
@@ -70,6 +60,5 @@ stdenv.mkDerivation rec {
maintainers = with lib.maintainers.bsc; [ rarias ];
platforms = lib.platforms.linux;
license = lib.licenses.gpl3Plus;
cross = false; # infiniband detection does not work
};
}

View File

@@ -10,7 +10,7 @@
, zlib
, autoPatchelfHook
, libfabric
, gcc
, gcc13
, wrapCCWith
}:
@@ -33,6 +33,8 @@ let
maintainers = with lib.maintainers.bsc; [ abonerib ];
};
gcc = gcc13;
v = {
hpckit = "2023.1.0";
compiler = "2023.1.0";

View File

@@ -16,19 +16,19 @@
, useGit ? false
, gitUrl ? "ssh://git@bscpm04.bsc.es/llvm-ompss/llvm-mono.git"
, gitBranch ? "master"
, gitCommit ? "872ba63f86edaefc9787984ef3fae9f2f94e0124" # github-release-2025.11
, gitCommit ? "880e2341c56bad1dc14e8c369fb3356bec19018e"
}:
let
stdenv = llvmPackages_latest.stdenv;
release = rec {
version = "2025.11";
version = "2025.06";
src = fetchFromGitHub {
owner = "bsc-pm";
repo = "llvm";
rev = "refs/tags/github-release-${version}";
hash = "sha256-UgwMTUkM9Z87dDH205swZFBeFhrcbLAxginViG40pBM=";
hash = "sha256-ww9PpRmtz/M9IyLiZ8rAehx2UW4VpQt+svf4XfKBzKo=";
};
};

View File

@@ -27,10 +27,10 @@ let
# We need to replace the lld linker from bintools with our linker just built,
# otherwise we run into incompatibility issues when mixing compiler and linker
# versions.
bintools-unwrapped = llvmPackages_latest.bintools-unwrapped.override {
bintools-unwrapped = llvmPackages_latest.tools.bintools-unwrapped.override {
lld = clangOmpss2Unwrapped;
};
bintools = llvmPackages_latest.bintools.override {
bintools = llvmPackages_latest.tools.bintools.override {
bintools = bintools-unwrapped;
};
targetConfig = stdenv.targetPlatform.config;

View File

@@ -65,7 +65,6 @@ stdenv.mkDerivation rec {
];
meta = {
broken = true;
homepage = "https://github.com/bsc-pm/mcxx";
description = "C/C++/Fortran source-to-source compilation infrastructure aimed at fast prototyping";
maintainers = with lib.maintainers.bsc; [ rpenacob ];

View File

@@ -1,11 +1,9 @@
{ python3Packages, lib }:
python3Packages.buildPythonApplication {
python3Packages.buildPythonApplication rec {
pname = "meteocat-exporter";
version = "1.0";
pyproject = true;
src = ./.;
doCheck = false;

View File

@@ -6,13 +6,6 @@
, pmix
, gfortran
, symlinkJoin
# Disabled when cross-compiling
# To fix cross compilation, we should fill the values in:
# https://github.com/pmodels/mpich/blob/main/maint/fcrosscompile/cross_values.txt.in
# For each arch
, enableFortran ? stdenv.hostPlatform == stdenv.buildPlatform
, perl
, targetPackages
}:
let
@@ -22,13 +15,10 @@ let
paths = [ pmix.dev pmix.out ];
};
in mpich.overrideAttrs (old: {
buildInputs = old.buildInputs ++ [
buildInput = old.buildInputs ++ [
libfabric
pmixAll
];
nativeBuildInputs = old.nativeBuildInputs ++ [
perl
];
configureFlags = [
"--enable-shared"
"--enable-sharedlib"
@@ -41,21 +31,10 @@ in mpich.overrideAttrs (old: {
] ++ lib.optionals (lib.versionAtLeast gfortran.version "10") [
"FFLAGS=-fallow-argument-mismatch" # https://github.com/pmodels/mpich/issues/4300
"FCFLAGS=-fallow-argument-mismatch"
] ++ lib.optionals (!enableFortran) [
"--disable-fortran"
];
preFixup = ''
sed -i 's:^CC=.*:CC=${targetPackages.stdenv.cc}/bin/${targetPackages.stdenv.cc.targetPrefix}cc:' $out/bin/mpicc
sed -i 's:^CXX=.*:CXX=${targetPackages.stdenv.cc}/bin/${targetPackages.stdenv.cc.targetPrefix}c++:' $out/bin/mpicxx
'' + lib.optionalString enableFortran ''
sed -i 's:^FC=.*:FC=${targetPackages.gfortran or gfortran}/bin/${targetPackages.gfortran.targetPrefix or gfortran.targetPrefix}gfortran:' $out/bin/mpifort
'';
hardeningDisable = [ "all" ];
meta = old.meta // {
maintainers = old.meta.maintainers ++ (with lib.maintainers.bsc; [ rarias ]);
cross = true;
};
})

View File

@@ -1,22 +0,0 @@
{
stdenv
, lib
}:
stdenv.mkDerivation {
pname = "nixgen";
version = "0.0.1";
src = ./nixgen;
dontUnpack = true;
phases = [ "installPhase" ];
installPhase = ''
mkdir -p $out/bin
cp -a $src $out/bin/nixgen
'';
meta = {
description = "Quickly generate flake.nix from command line";
maintainers = with lib.maintainers.bsc; [ rarias ];
platforms = lib.platforms.linux;
license = lib.licenses.gpl3Plus;
};
}

View File

@@ -1,97 +0,0 @@
#!/bin/sh
#
# Copyright (c) 2025, Barcelona Supercomputing Center (BSC)
# SPDX-License-Identifier: GPL-3.0+
# Author: Rodrigo Arias Mallo <rodrigo.arias@bsc.es>
function usage() {
echo "USAGE: nixgen [-f] [package [...]] [-b package [...]]" >&2
echo " Generates a flake.nix file with the given packages." >&2
echo " After flake.nix is created, use 'nix develop' to enter the shell." >&2
echo "OPTIONS" >&2
echo " -f Overwrite existing flake.nix (default: no)." >&2
echo " packages... Add these packages to the shell." >&2
echo " -b packages... Add the dependencies needed to build these packages." >&2
echo "EXAMPLE" >&2
echo " $ nixgen ovni bigotes -b nosv tampi" >&2
echo " Adds the packages ovni and bigotes as well as all required dependencies" >&2
echo " to build nosv and tampi." >&2
echo "AUTHOR" >&2
echo " Rodrigo Arias Mallo <rodrigo.arias@bsc.es>" >&2
exit 1
}
mode=package
packages=
inputsFrom=
force=
if [[ $# -eq 0 ]]; then
usage
fi
while [[ $# -gt 0 ]]; do
case $1 in -b)
mode=build
shift
;;
-f)
force=1
shift
;;
-h)
usage
;;
-*|--*)
echo "error: unknown option $1" >&2
exit 1
;;
*)
if [ "$mode" == "package" ]; then
packages+="${packages:+ }$1"
else
inputsFrom+="${inputsFrom:+ }$1"
fi
shift
;;
esac
done
if [ ! "$force" -a -e flake.nix ]; then
echo "error: flake.nix exists, force overwrite with -f" >&2
exit 1
fi
cat > flake.nix <<EOF
{
inputs.jungle.url = "git+https://jungle.bsc.es/git/rarias/jungle";
outputs = { self, jungle }:
let
nixpkgs = jungle.inputs.nixpkgs;
customOverlay = (final: prev: {
# Example overlay, for now empty
});
pkgs = import nixpkgs {
system = "x86_64-linux";
overlays = [
# Apply jungle overlay to get our BSC custom packages
jungle.outputs.bscOverlay
# And on top apply our local changes to customize for cluster
customOverlay
];
};
in {
devShells.x86_64-linux.default = pkgs.mkShell {
pname = "devshell";
# Include these packages in the shell
packages = with pkgs; [
$packages
];
# The dependencies needed to build these packages will be also included
inputsFrom = with pkgs; [
$inputsFrom
];
};
};
}
EOF

View File

@@ -3,6 +3,7 @@
, lib
, fetchFromGitHub
, pkg-config
, perl
, numactl
, hwloc
, boost
@@ -10,23 +11,22 @@
, ovni
, nosv
, clangOmpss2
, which
, useGit ? false
, gitUrl ? "ssh://git@gitlab-internal.bsc.es/nos-v/nodes.git"
, gitBranch ? "master"
, gitCommit ? "511489e71504a44381e0930562e7ac80ac69a848" # version-1.4
, gitCommit ? "6002ec9ae6eb876d962cc34366952a3b26599ba6"
}:
with lib;
let
release = rec {
version = "1.4";
version = "1.3";
src = fetchFromGitHub {
owner = "bsc-pm";
repo = "nodes";
rev = "version-${version}";
hash = "sha256-+lR/R0l3fGZO3XG7whMorFW2y2YZ0ZFnLeOHyQYrAsQ=";
hash = "sha256-cFb9pxcjtkMmH0CsGgUO9LTdXDNh7MCqicgGWawLrsU=";
};
};
@@ -59,7 +59,6 @@ in
doCheck = false;
nativeCheckInputs = [
clangOmpss2
which
];
# The "bindnow" flags are incompatible with ifunc resolution mechanism. We

View File

@@ -13,19 +13,19 @@
, useGit ? false
, gitUrl ? "git@gitlab-internal.bsc.es:nos-v/nos-v.git"
, gitBranch ? "master"
, gitCommit ? "1108e4786b58e0feb9a16fa093010b763eb2f8e8" # version 4.0.0
, gitCommit ? "9f47063873c3aa9d6a47482a82c5000a8c813dd8"
}:
with lib;
let
release = rec {
version = "4.0.0";
version = "3.2.0";
src = fetchFromGitHub {
owner = "bsc-pm";
repo = "nos-v";
rev = "${version}";
hash = "sha256-llaq73bd/YxLVKNlMebnUHKa4z3sdcsuDUoVwUxNuw8=";
hash = "sha256-yaz92426EM8trdkBJlISmAoG9KJCDTvoAW/HKrasvOw=";
};
};

View File

@@ -32,11 +32,6 @@ stdenv.mkDerivation rec {
"CXX=mpicxx"
];
env = {
MPICH_CC="${stdenv.cc}/bin/${stdenv.cc.targetPrefix}cc";
MPICH_CXX="${stdenv.cc}/bin/${stdenv.cc.targetPrefix}c++";
};
postInstall = ''
mkdir -p $out/bin
for f in $(find $out -executable -type f); do
@@ -49,6 +44,5 @@ stdenv.mkDerivation rec {
homepage = "http://mvapich.cse.ohio-state.edu/benchmarks/";
maintainers = [ ];
platforms = lib.platforms.all;
cross = true;
};
}

View File

@@ -7,7 +7,7 @@
, useGit ? false
, gitBranch ? "master"
, gitUrl ? "ssh://git@bscpm04.bsc.es/rarias/ovni.git"
, gitCommit ? "06432668f346c8bdc1006fabc23e94ccb81b0d8b" # version 1.13.0
, gitCommit ? "e4f62382076f0cf0b1d08175cf57cc0bc51abc61"
, enableDebug ? false
# Only enable MPI if the build is native (fails on cross-compilation)
, useMpi ? (stdenv.buildPlatform.canExecute stdenv.hostPlatform)
@@ -15,13 +15,13 @@
let
release = rec {
version = "1.13.0";
version = "1.12.0";
src = fetchFromGitHub {
owner = "bsc-pm";
repo = "ovni";
rev = "${version}";
hash = "sha256-0l2ryIyWNiZqeYdVlnj/WnQGS3xFCY4ICG8JedX424w=";
} // { shortRev = "0643266"; };
hash = "sha256-H04JvsVKrdqr3ON7JhU0g17jjlg/jzQ7eTfx9vUNd3E=";
} // { shortRev = "a73afcf"; };
};
git = rec {

View File

@@ -12,7 +12,7 @@
, paraverKernel
, openssl
, glibcLocales
, wrapGAppsHook3
, wrapGAppsHook
}:
let
@@ -64,7 +64,7 @@ stdenv.mkDerivation rec {
autoconf
automake
autoreconfHook
wrapGAppsHook3
wrapGAppsHook
];
buildInputs = [

View File

@@ -35,6 +35,5 @@ stdenv.mkDerivation rec {
maintainers = with lib.maintainers.bsc; [ rarias ];
platforms = lib.platforms.linux;
license = lib.licenses.mit;
cross = true;
};
}

View File

@@ -5,14 +5,23 @@
, automake
, autoconf
, libtool
, mpi
, autoreconfHook
, gpi-2
, boost
, numactl
, rdma-core
, gfortran
, symlinkJoin
}:
let
mpiAll = symlinkJoin {
name = "mpi-all";
paths = [ mpi.all ];
};
in
stdenv.mkDerivation rec {
pname = "tagaspi";
enableParallelBuilding = true;
@@ -26,18 +35,16 @@ stdenv.mkDerivation rec {
hash = "sha256-RGG/Re2uM293HduZfGzKUWioDtwnSYYdfeG9pVrX9EM=";
};
nativeBuildInputs = [
buildInputs = [
autoreconfHook
automake
autoconf
libtool
gfortran
];
buildInputs = [
boost
numactl
rdma-core
gfortran
mpiAll
];
dontDisableStatic = true;
@@ -56,6 +63,5 @@ stdenv.mkDerivation rec {
maintainers = with lib.maintainers.bsc; [ rarias ];
platforms = lib.platforms.linux;
license = lib.licenses.gpl3Plus;
cross = false; # gpi-2 cannot cross
};
}

View File

@@ -68,6 +68,5 @@ in stdenv.mkDerivation {
maintainers = with lib.maintainers.bsc; [ rarias ];
platforms = lib.platforms.linux;
license = lib.licenses.gpl3Plus;
cross = true;
};
}

View File

@@ -1,11 +1,9 @@
{ python3Packages, lib }:
python3Packages.buildPythonApplication {
python3Packages.buildPythonApplication rec {
pname = "upc-qaire-exporter";
version = "1.0";
pyproject = true;
src = ./.;
doCheck = false;