9 Commits

Author SHA1 Message Date
80b42c302e Add missing pre/postInstall hooks to intel 2023
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CI / build:all (pull_request) Failing after 15s
2025-10-07 16:32:33 +02:00
b7ea574cda Trace addition to nix-support/private 2025-10-07 16:32:33 +02:00
2864857393 Add nix-support/private to unfree derivation outputs 2025-10-07 16:32:33 +02:00
1d838ffbbd Add skeleton meta to intel 2023 2025-10-07 16:31:28 +02:00
e101159e0e Add meta to packages 2025-10-07 16:31:28 +02:00
fd9e72949b Add maintainers 2025-10-07 16:27:02 +02:00
c5563ab111 Fix nanos6 cross-compilation for riscv
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CI / build:all (pull_request) Successful in 16s
2025-10-07 16:21:35 +02:00
a8bfb6dcd7 Fix cross compilation for lmbench 2025-10-07 16:21:35 +02:00
93e94cd370 Disable papi when cross compiling
Even if we do an override to papi get the proper configure flags for
cross-compiling, the memory fences are not defined for risc-v:

mb.h:67:2: error: #error Need to define rmb for this architecture!
2025-10-07 16:21:35 +02:00
90 changed files with 498 additions and 1683 deletions

View File

@@ -12,9 +12,4 @@ jobs:
runs-on: native
steps:
- uses: https://gitea.com/ScMi1/checkout@v1.4
- run: nix build -L --no-link --print-out-paths .#bsc.ci.all
build:cross:
runs-on: native
steps:
- uses: https://gitea.com/ScMi1/checkout@v1.4
- run: nix build -L --no-link --print-out-paths .#bsc.ci.cross
- run: nix build -L --no-link --print-out-paths .#bsc-ci.all

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@@ -1,30 +0,0 @@
# Maintainers
## Role of a maintainer
The responsibilities of maintainers are quite lax, and similar in spirit to
[nixpkgs' maintainers][1]:
The main responsibility of a maintainer is to keep the packages they
maintain in a functioning state, and keep up with updates. In order to do
that, they are empowered to make decisions over the packages they maintain.
That being said, the maintainer is not alone in proposing changes to the
packages. Anybody (both bots and humans) can send PRs to bump or tweak the
package.
In practice, this means that when updating or proposing changes to a package,
we will notify maintainers by mentioning them in Gitea so they can test changes
and give feedback.
Since we do bi-yearly release cycles, there is no expectation from maintainers
to update packages at each upstream release. Nevertheless, on each release cycle
we may request help from maintainers when updating or testing their packages.
## Becoming a maintainer
You'll have to add yourself in the `maintainers.nix` list; your username should
match your `bsc.es` email. Then you can add yourself to the `meta.maintainers`
of any package you are interested in maintaining.
[1]: [https://github.com/NixOS/nixpkgs/tree/nixos-25.05/maintainers]

90
flake.lock generated
View File

@@ -1,25 +1,107 @@
{
"nodes": {
"agenix": {
"inputs": {
"darwin": "darwin",
"home-manager": "home-manager",
"nixpkgs": [
"nixpkgs"
],
"systems": "systems"
},
"locked": {
"lastModified": 1750173260,
"narHash": "sha256-9P1FziAwl5+3edkfFcr5HeGtQUtrSdk/MksX39GieoA=",
"owner": "ryantm",
"repo": "agenix",
"rev": "531beac616433bac6f9e2a19feb8e99a22a66baf",
"type": "github"
},
"original": {
"owner": "ryantm",
"repo": "agenix",
"type": "github"
}
},
"darwin": {
"inputs": {
"nixpkgs": [
"agenix",
"nixpkgs"
]
},
"locked": {
"lastModified": 1744478979,
"narHash": "sha256-dyN+teG9G82G+m+PX/aSAagkC+vUv0SgUw3XkPhQodQ=",
"owner": "lnl7",
"repo": "nix-darwin",
"rev": "43975d782b418ebf4969e9ccba82466728c2851b",
"type": "github"
},
"original": {
"owner": "lnl7",
"ref": "master",
"repo": "nix-darwin",
"type": "github"
}
},
"home-manager": {
"inputs": {
"nixpkgs": [
"agenix",
"nixpkgs"
]
},
"locked": {
"lastModified": 1745494811,
"narHash": "sha256-YZCh2o9Ua1n9uCvrvi5pRxtuVNml8X2a03qIFfRKpFs=",
"owner": "nix-community",
"repo": "home-manager",
"rev": "abfad3d2958c9e6300a883bd443512c55dfeb1be",
"type": "github"
},
"original": {
"owner": "nix-community",
"repo": "home-manager",
"type": "github"
}
},
"nixpkgs": {
"locked": {
"lastModified": 1767634882,
"narHash": "sha256-2GffSfQxe3sedHzK+sTKlYo/NTIAGzbFCIsNMUPAAnk=",
"lastModified": 1752436162,
"narHash": "sha256-Kt1UIPi7kZqkSc5HVj6UY5YLHHEzPBkgpNUByuyxtlw=",
"owner": "NixOS",
"repo": "nixpkgs",
"rev": "3c9db02515ef1d9b6b709fc60ba9a540957f661c",
"rev": "dfcd5b901dbab46c9c6e80b265648481aafb01f8",
"type": "github"
},
"original": {
"owner": "NixOS",
"ref": "nixos-25.11",
"ref": "nixos-25.05",
"repo": "nixpkgs",
"type": "github"
}
},
"root": {
"inputs": {
"agenix": "agenix",
"nixpkgs": "nixpkgs"
}
},
"systems": {
"locked": {
"lastModified": 1681028828,
"narHash": "sha256-Vy1rq5AaRuLzOxct8nz4T6wlgyUR7zLU309k9mBC768=",
"owner": "nix-systems",
"repo": "default",
"rev": "da67096a3b9bf56a91d16901293e51ba5b49a27e",
"type": "github"
},
"original": {
"owner": "nix-systems",
"repo": "default",
"type": "github"
}
}
},
"root": "root",

View File

@@ -1,13 +1,15 @@
{
inputs = {
nixpkgs.url = "github:NixOS/nixpkgs/nixos-25.11";
nixpkgs.url = "github:NixOS/nixpkgs/nixos-25.05";
agenix.url = "github:ryantm/agenix";
agenix.inputs.nixpkgs.follows = "nixpkgs";
};
outputs = { self, nixpkgs, ... }:
outputs = { self, nixpkgs, agenix, ... }:
let
mkConf = name: nixpkgs.lib.nixosSystem {
system = "x86_64-linux";
specialArgs = { inherit nixpkgs; theFlake = self; };
specialArgs = { inherit nixpkgs agenix; theFlake = self; };
modules = [ "${self.outPath}/m/${name}/configuration.nix" ];
};
# For now we only support x86
@@ -40,13 +42,13 @@ in
# full nixpkgs with our overlay applied
legacyPackages.${system} = pkgs;
hydraJobs = self.legacyPackages.${system}.bsc.hydraJobs;
hydraJobs = {
inherit (self.legacyPackages.${system}.bsc-ci) tests pkgs cross;
};
# propagate nixpkgs lib, so we can do bscpkgs.lib
lib = nixpkgs.lib // {
maintainers = nixpkgs.lib.maintainers // {
bsc = import ./pkgs/maintainers.nix;
};
bsc.maintainers = import ./maintainers/maintainer-list.nix;
};
};
}

View File

@@ -57,18 +57,6 @@
};
};
services.fail2ban = {
enable = true;
maxretry = 5;
bantime-increment = {
enable = true; # Double ban time on each attack
maxtime = "7d"; # Ban up to a week
};
};
# Disable SSH login with password, allow only keypair
services.openssh.settings.PasswordAuthentication = false;
networking.firewall = {
extraCommands = ''
# Blackhole BSC vulnerability scanner (OpenVAS) as it is spamming our

View File

@@ -24,7 +24,7 @@
address = "10.0.40.40";
prefixLength = 24;
} ];
interfaces.ibs785.ipv4.addresses = [ {
interfaces.ibp5s0.ipv4.addresses = [ {
address = "10.0.42.40";
prefixLength = 24;
} ];

View File

@@ -11,7 +11,6 @@
./base/hw.nix
./base/net.nix
./base/nix.nix
./base/sys-devices.nix
./base/ntp.nix
./base/rev.nix
./base/ssh.nix

View File

@@ -1,8 +1,9 @@
{ pkgs, ... }:
{ agenix, ... }:
{
imports = [ ../../module/agenix.nix ];
imports = [ agenix.nixosModules.default ];
# Add agenix to system packages
environment.systemPackages = [ pkgs.agenix ];
environment.systemPackages = [
agenix.packages.x86_64-linux.default
];
}

View File

@@ -1,12 +1,12 @@
{ pkgs, ... }:
{ pkgs, config, ... }:
{
environment.systemPackages = with pkgs; [
vim wget git htop tmux pciutils tcpdump ripgrep nix-index nixos-option
nix-diff ipmitool freeipmi ethtool lm_sensors cmake gnumake file tree
ncdu perf ldns pv
# From jungle overlay
osumb nixgen
ncdu config.boot.kernelPackages.perf ldns pv
# From bsckgs overlay
osumb
];
programs.direnv.enable = true;

View File

@@ -1,9 +0,0 @@
{
nix.settings.system-features = [ "sys-devices" ];
programs.nix-required-mounts.enable = true;
programs.nix-required-mounts.allowedPatterns.sys-devices.paths = [
"/sys/devices/system/cpu"
"/sys/devices/system/node"
];
}

View File

@@ -139,7 +139,6 @@
openssh.authorizedKeys.keys = [
"ssh-ed25519 AAAAC3NzaC1lZDI1NTE5AAAAIKGt0ESYxekBiHJQowmKpfdouw0hVm3N7tUMtAaeLejK vincent@varch"
];
shell = pkgs.zsh;
};
pmartin1 = {
@@ -181,19 +180,6 @@
"ssh-ed25519 AAAAC3NzaC1lZDI1NTE5AAAAIFmMqKqPg4uocNOr3O41kLbZMOMJn3m2ZdN1JvTR96z3 bsccns@arnau-bsc"
];
};
aaguirre = {
uid = 9655;
isNormalUser = true;
home = "/home/Computational/aaguirre";
description = "Alejandro Aguirre";
group = "Computational";
hosts = [ "apex" "hut" ];
hashedPassword = "$6$TXRXQT6jjBvxkxU6$E.sh5KspAm1qeG5Ct7OPHpo8REmbGDwjFGvqeGgTVz3GASGOAnPL7UMZsMAsAKBoahOw.v8LNno6XGrTEPzZH1";
openssh.authorizedKeys.keys = [
"ssh-ed25519 AAAAC3NzaC1lZDI1NTE5AAAAIOlRX7ZCnqtUJYCxKgWmgSrFCYuA2LHY96rVwqxXPl86 aaguirre@BSC-8488184117"
];
};
};
groups = {

View File

@@ -5,5 +5,5 @@
boot.kernelModules = [ "ipmi_watchdog" ];
# Enable systemd watchdog with 30 s interval
systemd.settings.Manager.RuntimeWatchdogSec = 30;
systemd.watchdog.runtimeTime = "30s";
}

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@@ -1,6 +1,11 @@
{ pkgs, lib, ... }:
{ config, pkgs, lib, ... }:
{
# add the perf tool
environment.systemPackages = with pkgs; [
config.boot.kernelPackages.perf
];
# allow non-root users to read tracing data from the kernel
boot.kernel.sysctl."kernel.perf_event_paranoid" = -2;
boot.kernel.sysctl."kernel.kptr_restrict" = 0;

View File

@@ -93,4 +93,20 @@
wantedBy = [ "multi-user.target" ];
serviceConfig.ExecStart = script;
};
# Only allow SSH connections from users who have a SLURM allocation
# See: https://slurm.schedmd.com/pam_slurm_adopt.html
security.pam.services.sshd.rules.account.slurm = {
control = "required";
enable = true;
modulePath = "${pkgs.slurm}/lib/security/pam_slurm_adopt.so";
args = [ "log_level=debug5" ];
order = 999999; # Make it last one
};
# Disable systemd session (pam_systemd.so) as it will conflict with the
# pam_slurm_adopt.so module. What happens is that the shell is first adopted
# into the slurmstepd task and then into the systemd session, which is not
# what we want, otherwise it will linger even if all jobs are gone.
security.pam.services.sshd.startSession = lib.mkForce false;
}

View File

@@ -17,7 +17,6 @@
./postgresql.nix
./nginx.nix
./p.nix
./ompss2-timer.nix
#./pxe.nix
];
@@ -45,7 +44,7 @@
address = "10.0.40.7";
prefixLength = 24;
} ];
interfaces.ibs785.ipv4.addresses = [ {
interfaces.ibp5s0.ipv4.addresses = [ {
address = "10.0.42.7";
prefixLength = 24;
} ];

View File

@@ -29,9 +29,6 @@
};
};
# Allow gitea user to send mail
users.users.gitea.extraGroups = [ "mail-robot" ];
services.gitea-actions-runner.instances = {
runrun = {
enable = true;

View File

@@ -1,11 +1,8 @@
{ config, lib, ... }:
{
# Robot user that can see the password to send mail from jungle-robot
users.groups.mail-robot = {};
age.secrets.jungleRobotPassword = {
file = ../../secrets/jungle-robot-password.age;
group = "mail-robot";
group = "gitea";
mode = "440";
};

View File

@@ -4,8 +4,8 @@ let
name = "jungle-web";
src = pkgs.fetchgit {
url = "https://jungle.bsc.es/git/rarias/jungle-website.git";
rev = "52abaf4d71652a9ef77a0b098db14ca33bffff4c";
hash = "sha256-/ul9GazbOrOkmlvSgDz/+2W+V+ir5725Y7mVLc3rb0M=";
rev = "739bf0175a7f05380fe7ad7023ff1d60db1710e1";
hash = "sha256-ea5DzhYTzZ9TmqD+x95rdNdLbxPnBluqlYH2NmBYmc4=";
};
buildInputs = [ pkgs.hugo ];
buildPhase = ''

View File

@@ -1,85 +0,0 @@
{ config, pkgs, ... }:
{
systemd.timers = {
"ompss2-closing" = {
wantedBy = [ "timers.target" ];
timerConfig = {
Unit = "ompss2-closing.service";
OnCalendar = [ "*-03-15 07:00:00" "*-09-15 07:00:00"];
};
};
"ompss2-freeze" = {
wantedBy = [ "timers.target" ];
timerConfig = {
Unit = "ompss2-freeze.service";
OnCalendar = [ "*-04-15 07:00:00" "*-10-15 07:00:00" ];
};
};
"ompss2-release" = {
wantedBy = [ "timers.target" ];
timerConfig = {
Unit = "ompss2-release.service";
OnCalendar = [ "*-05-15 07:00:00" "*-11-15 07:00:00" ];
};
};
};
systemd.services =
let
closing = pkgs.writeText "closing.txt"
''
Subject: OmpSs-2 release enters closing period
Hi,
You have one month to merge the remaining features for the next OmpSs-2
release. Please, identify what needs to be merged and discuss it in the next
OmpSs-2 meeting.
Thanks!,
Jungle robot
'';
freeze = pkgs.writeText "freeze.txt"
''
Subject: OmpSs-2 release enters freeze period
Hi,
The period to introduce new features or breaking changes is over, only bug
fixes are allowed now. During this time, please prepare the release notes
to be included in the next OmpSs-2 release.
Thanks!,
Jungle robot
'';
release = pkgs.writeText "release.txt"
''
Subject: OmpSs-2 release now
Hi,
The period to introduce bug fixes is now over. Please, proceed to do the
OmpSs-2 release.
Thanks!,
Jungle robot
'';
mkServ = name: mail: {
"ompss2-${name}" = {
script = ''
set -eu
set -o pipefail
cat ${mail} | ${config.security.wrapperDir}/sendmail star@bsc.es
'';
serviceConfig = {
Type = "oneshot";
DynamicUser = true;
Group = "mail-robot";
};
};
};
in
(mkServ "closing" closing) //
(mkServ "freeze" freeze) //
(mkServ "release" release);
}

View File

@@ -46,7 +46,7 @@
address = "10.0.40.42";
prefixLength = 24;
} ];
interfaces.ibs785.ipv4.addresses = [ {
interfaces.ibp5s0.ipv4.addresses = [ {
address = "10.0.42.42";
prefixLength = 24;
} ];

View File

@@ -1,357 +0,0 @@
{
config,
options,
lib,
pkgs,
...
}:
with lib;
let
cfg = config.age;
isDarwin = lib.attrsets.hasAttrByPath [ "environment" "darwinConfig" ] options;
ageBin = config.age.ageBin;
users = config.users.users;
sysusersEnabled =
if isDarwin then
false
else
options.systemd ? sysusers && (config.systemd.sysusers.enable || config.services.userborn.enable);
mountCommand =
if isDarwin then
''
if ! diskutil info "${cfg.secretsMountPoint}" &> /dev/null; then
num_sectors=1048576
dev=$(hdiutil attach -nomount ram://"$num_sectors" | sed 's/[[:space:]]*$//')
newfs_hfs -v agenix "$dev"
mount -t hfs -o nobrowse,nodev,nosuid,-m=0751 "$dev" "${cfg.secretsMountPoint}"
fi
''
else
''
grep -q "${cfg.secretsMountPoint} ramfs" /proc/mounts ||
mount -t ramfs none "${cfg.secretsMountPoint}" -o nodev,nosuid,mode=0751
'';
newGeneration = ''
_agenix_generation="$(basename "$(readlink ${cfg.secretsDir})" || echo 0)"
(( ++_agenix_generation ))
echo "[agenix] creating new generation in ${cfg.secretsMountPoint}/$_agenix_generation"
mkdir -p "${cfg.secretsMountPoint}"
chmod 0751 "${cfg.secretsMountPoint}"
${mountCommand}
mkdir -p "${cfg.secretsMountPoint}/$_agenix_generation"
chmod 0751 "${cfg.secretsMountPoint}/$_agenix_generation"
'';
chownGroup = if isDarwin then "admin" else "keys";
# chown the secrets mountpoint and the current generation to the keys group
# instead of leaving it root:root.
chownMountPoint = ''
chown :${chownGroup} "${cfg.secretsMountPoint}" "${cfg.secretsMountPoint}/$_agenix_generation"
'';
setTruePath = secretType: ''
${
if secretType.symlink then
''
_truePath="${cfg.secretsMountPoint}/$_agenix_generation/${secretType.name}"
''
else
''
_truePath="${secretType.path}"
''
}
'';
installSecret = secretType: ''
${setTruePath secretType}
echo "decrypting '${secretType.file}' to '$_truePath'..."
TMP_FILE="$_truePath.tmp"
IDENTITIES=()
for identity in ${toString cfg.identityPaths}; do
test -r "$identity" || continue
test -s "$identity" || continue
IDENTITIES+=(-i)
IDENTITIES+=("$identity")
done
test "''${#IDENTITIES[@]}" -eq 0 && echo "[agenix] WARNING: no readable identities found!"
mkdir -p "$(dirname "$_truePath")"
[ "${secretType.path}" != "${cfg.secretsDir}/${secretType.name}" ] && mkdir -p "$(dirname "${secretType.path}")"
(
umask u=r,g=,o=
test -f "${secretType.file}" || echo '[agenix] WARNING: encrypted file ${secretType.file} does not exist!'
test -d "$(dirname "$TMP_FILE")" || echo "[agenix] WARNING: $(dirname "$TMP_FILE") does not exist!"
LANG=${
config.i18n.defaultLocale or "C"
} ${ageBin} --decrypt "''${IDENTITIES[@]}" -o "$TMP_FILE" "${secretType.file}"
)
chmod ${secretType.mode} "$TMP_FILE"
mv -f "$TMP_FILE" "$_truePath"
${optionalString secretType.symlink ''
[ "${secretType.path}" != "${cfg.secretsDir}/${secretType.name}" ] && ln -sfT "${cfg.secretsDir}/${secretType.name}" "${secretType.path}"
''}
'';
testIdentities = map (path: ''
test -f ${path} || echo '[agenix] WARNING: config.age.identityPaths entry ${path} not present!'
'') cfg.identityPaths;
cleanupAndLink = ''
_agenix_generation="$(basename "$(readlink ${cfg.secretsDir})" || echo 0)"
(( ++_agenix_generation ))
echo "[agenix] symlinking new secrets to ${cfg.secretsDir} (generation $_agenix_generation)..."
ln -sfT "${cfg.secretsMountPoint}/$_agenix_generation" ${cfg.secretsDir}
(( _agenix_generation > 1 )) && {
echo "[agenix] removing old secrets (generation $(( _agenix_generation - 1 )))..."
rm -rf "${cfg.secretsMountPoint}/$(( _agenix_generation - 1 ))"
}
'';
installSecrets = builtins.concatStringsSep "\n" (
[ "echo '[agenix] decrypting secrets...'" ]
++ testIdentities
++ (map installSecret (builtins.attrValues cfg.secrets))
++ [ cleanupAndLink ]
);
chownSecret = secretType: ''
${setTruePath secretType}
chown ${secretType.owner}:${secretType.group} "$_truePath"
'';
chownSecrets = builtins.concatStringsSep "\n" (
[ "echo '[agenix] chowning...'" ]
++ [ chownMountPoint ]
++ (map chownSecret (builtins.attrValues cfg.secrets))
);
secretType = types.submodule (
{ config, ... }:
{
options = {
name = mkOption {
type = types.str;
default = config._module.args.name;
defaultText = literalExpression "config._module.args.name";
description = ''
Name of the file used in {option}`age.secretsDir`
'';
};
file = mkOption {
type = types.path;
description = ''
Age file the secret is loaded from.
'';
};
path = mkOption {
type = types.str;
default = "${cfg.secretsDir}/${config.name}";
defaultText = literalExpression ''
"''${cfg.secretsDir}/''${config.name}"
'';
description = ''
Path where the decrypted secret is installed.
'';
};
mode = mkOption {
type = types.str;
default = "0400";
description = ''
Permissions mode of the decrypted secret in a format understood by chmod.
'';
};
owner = mkOption {
type = types.str;
default = "0";
description = ''
User of the decrypted secret.
'';
};
group = mkOption {
type = types.str;
default = users.${config.owner}.group or "0";
defaultText = literalExpression ''
users.''${config.owner}.group or "0"
'';
description = ''
Group of the decrypted secret.
'';
};
symlink = mkEnableOption "symlinking secrets to their destination" // {
default = true;
};
};
}
);
in
{
imports = [
(mkRenamedOptionModule [ "age" "sshKeyPaths" ] [ "age" "identityPaths" ])
];
options.age = {
ageBin = mkOption {
type = types.str;
default = "${pkgs.age}/bin/age";
defaultText = literalExpression ''
"''${pkgs.age}/bin/age"
'';
description = ''
The age executable to use.
'';
};
secrets = mkOption {
type = types.attrsOf secretType;
default = { };
description = ''
Attrset of secrets.
'';
};
secretsDir = mkOption {
type = types.path;
default = "/run/agenix";
description = ''
Folder where secrets are symlinked to
'';
};
secretsMountPoint = mkOption {
type =
types.addCheck types.str (
s:
(builtins.match "[ \t\n]*" s) == null # non-empty
&& (builtins.match ".+/" s) == null
) # without trailing slash
// {
description = "${types.str.description} (with check: non-empty without trailing slash)";
};
default = "/run/agenix.d";
description = ''
Where secrets are created before they are symlinked to {option}`age.secretsDir`
'';
};
identityPaths = mkOption {
type = types.listOf types.path;
default =
if isDarwin then
[
"/etc/ssh/ssh_host_ed25519_key"
"/etc/ssh/ssh_host_rsa_key"
]
else if (config.services.openssh.enable or false) then
map (e: e.path) (
lib.filter (e: e.type == "rsa" || e.type == "ed25519") config.services.openssh.hostKeys
)
else
[ ];
defaultText = literalExpression ''
if isDarwin
then [
"/etc/ssh/ssh_host_ed25519_key"
"/etc/ssh/ssh_host_rsa_key"
]
else if (config.services.openssh.enable or false)
then map (e: e.path) (lib.filter (e: e.type == "rsa" || e.type == "ed25519") config.services.openssh.hostKeys)
else [];
'';
description = ''
Path to SSH keys to be used as identities in age decryption.
'';
};
};
config = mkIf (cfg.secrets != { }) (mkMerge [
{
assertions = [
{
assertion = cfg.identityPaths != [ ];
message = "age.identityPaths must be set, for example by enabling openssh.";
}
];
}
(optionalAttrs (!isDarwin) {
# When using sysusers we no longer be started as an activation script
# because those are started in initrd while sysusers is started later.
systemd.services.agenix-install-secrets = mkIf sysusersEnabled {
wantedBy = [ "sysinit.target" ];
after = [ "systemd-sysusers.service" ];
unitConfig.DefaultDependencies = "no";
path = [ pkgs.mount ];
serviceConfig = {
Type = "oneshot";
ExecStart = pkgs.writeShellScript "agenix-install" (concatLines [
newGeneration
installSecrets
chownSecrets
]);
RemainAfterExit = true;
};
};
# Create a new directory full of secrets for symlinking (this helps
# ensure removed secrets are actually removed, or at least become
# invalid symlinks).
system.activationScripts = mkIf (!sysusersEnabled) {
agenixNewGeneration = {
text = newGeneration;
deps = [
"specialfs"
];
};
agenixInstall = {
text = installSecrets;
deps = [
"agenixNewGeneration"
"specialfs"
];
};
# So user passwords can be encrypted.
users.deps = [ "agenixInstall" ];
# Change ownership and group after users and groups are made.
agenixChown = {
text = chownSecrets;
deps = [
"users"
"groups"
];
};
# So other activation scripts can depend on agenix being done.
agenix = {
text = "";
deps = [ "agenixChown" ];
};
};
})
(optionalAttrs isDarwin {
launchd.daemons.activate-agenix = {
script = ''
set -e
set -o pipefail
export PATH="${pkgs.gnugrep}/bin:${pkgs.coreutils}/bin:@out@/sw/bin:/usr/bin:/bin:/usr/sbin:/sbin"
${newGeneration}
${installSecrets}
${chownSecrets}
exit 0
'';
serviceConfig = {
RunAtLoad = true;
KeepAlive.SuccessfulExit = false;
};
};
})
]);
}

View File

@@ -1,10 +1,3 @@
{
services.nixseparatedebuginfod2 = {
enable = true;
substituters = [
"local:"
"https://cache.nixos.org"
"http://hut/cache"
];
};
services.nixseparatedebuginfod.enable = true;
}

View File

@@ -1,4 +1,4 @@
{ lib, pkgs, ... }:
{ lib, ... }:
{
imports = [
@@ -21,20 +21,4 @@
};
services.slurm.client.enable = true;
# Only allow SSH connections from users who have a SLURM allocation
# See: https://slurm.schedmd.com/pam_slurm_adopt.html
security.pam.services.sshd.rules.account.slurm = {
control = "required";
enable = true;
modulePath = "${pkgs.slurm}/lib/security/pam_slurm_adopt.so";
args = [ "log_level=debug5" ];
order = 999999; # Make it last one
};
# Disable systemd session (pam_systemd.so) as it will conflict with the
# pam_slurm_adopt.so module. What happens is that the shell is first adopted
# into the slurmstepd task and then into the systemd session, which is not
# what we want, otherwise it will linger even if all jobs are gone.
security.pam.services.sshd.startSession = lib.mkForce false;
}

View File

@@ -1,6 +1,31 @@
{ config, pkgs, ... }:
{
let
suspendProgram = pkgs.writeShellScript "suspend.sh" ''
exec 1>>/var/log/power_save.log 2>>/var/log/power_save.log
set -x
export "PATH=/run/current-system/sw/bin:$PATH"
echo "$(date) Suspend invoked $0 $*" >> /var/log/power_save.log
hosts=$(scontrol show hostnames $1)
for host in $hosts; do
echo Shutting down host: $host
ipmitool -I lanplus -H ''${host}-ipmi -P "" -U "" chassis power off
done
'';
resumeProgram = pkgs.writeShellScript "resume.sh" ''
exec 1>>/var/log/power_save.log 2>>/var/log/power_save.log
set -x
export "PATH=/run/current-system/sw/bin:$PATH"
echo "$(date) Suspend invoked $0 $*" >> /var/log/power_save.log
hosts=$(scontrol show hostnames $1)
for host in $hosts; do
echo Starting host: $host
ipmitool -I lanplus -H ''${host}-ipmi -P "" -U "" chassis power on
done
'';
in {
services.slurm = {
controlMachine = "apex";
clusterName = "jungle";
@@ -34,6 +59,16 @@
# the resources. Use the task/cgroup plugin to enable process containment.
TaskPlugin=task/affinity,task/cgroup
# Power off unused nodes until they are requested
SuspendProgram=${suspendProgram}
SuspendTimeout=60
ResumeProgram=${resumeProgram}
ResumeTimeout=300
SuspendExcNodes=fox
# Turn the nodes off after 1 hour of inactivity
SuspendTime=3600
# Reduce port range so we can allow only this range in the firewall
SrunPortRange=60000-61000
@@ -51,7 +86,9 @@
# when a task runs (srun) so we can ssh early.
PrologFlags=Alloc,Contain,X11
LaunchParameters=use_interactive_step
# LaunchParameters=ulimit_pam_adopt will set RLIMIT_RSS in processes
# adopted by the external step, similar to tasks running in regular steps
# LaunchParameters=ulimit_pam_adopt
SlurmdDebug=debug5
#DebugFlags=Protocol,Cgroup
'';

View File

@@ -20,7 +20,7 @@
address = "10.0.40.1";
prefixLength = 24;
} ];
interfaces.ibs785.ipv4.addresses = [ {
interfaces.ibp5s0.ipv4.addresses = [ {
address = "10.0.42.1";
prefixLength = 24;
} ];

View File

@@ -21,7 +21,7 @@
prefixLength = 24;
} ];
# Watch out! The OmniPath device is not in the same place here:
interfaces.ibs801.ipv4.addresses = [ {
interfaces.ibp129s0.ipv4.addresses = [ {
address = "10.0.42.2";
prefixLength = 24;
} ];

View File

@@ -27,7 +27,4 @@
};
};
};
# Allow gitea user to send mail
users.users.gitea.extraGroups = [ "mail-robot" ];
}

View File

@@ -4,8 +4,8 @@ let
name = "jungle-web";
src = pkgs.fetchgit {
url = "https://jungle.bsc.es/git/rarias/jungle-website.git";
rev = "52abaf4d71652a9ef77a0b098db14ca33bffff4c";
hash = "sha256-/ul9GazbOrOkmlvSgDz/+2W+V+ir5725Y7mVLc3rb0M=";
rev = "739bf0175a7f05380fe7ad7023ff1d60db1710e1";
hash = "sha256-ea5DzhYTzZ9TmqD+x95rdNdLbxPnBluqlYH2NmBYmc4=";
};
buildInputs = [ pkgs.hugo ];
buildPhase = ''

View File

@@ -3,5 +3,4 @@ builtins.mapAttrs (name: value: { email = name + "@bsc.es"; } // value) {
arocanon.name = "Aleix Roca";
rarias.name = "Rodrigo Arias";
rpenacob.name = "Raúl Peñacoba";
varcila.name = "Vincent Arcila";
}

View File

@@ -7,14 +7,40 @@ let
callPackage = final.callPackage;
bscPkgs = {
agenix = prev.callPackage ./pkgs/agenix/default.nix { };
# override stdenv to add a sentinel to know if a derivation comes
# from unfree sources.
stdenv = prev.stdenv // {
mkDerivation =
args:
let
originalDrv = prev.stdenv.mkDerivation args;
checkLicense = l: if builtins.isAttrs l then !(l.free or true) else false;
licenses = if builtins.isList args.meta.license then args.meta.license else [ args.meta.license ];
hasUnfreeLicense =
if args ? meta && args.meta ? license then builtins.any checkLicense licenses else false;
in
if hasUnfreeLicense then
builtins.traceVerbose "adding nix-support/private to ${originalDrv.name or originalDrv.pname}" (
originalDrv.overrideAttrs (old: {
postInstall = (old.postInstall or "") + ''
mkdir -p $out/nix-support
touch $out/nix-support/private
'';
}))
else
originalDrv;
};
amd-uprof = prev.callPackage ./pkgs/amd-uprof/default.nix { };
bench6 = callPackage ./pkgs/bench6/default.nix { };
bigotes = callPackage ./pkgs/bigotes/default.nix { };
clangOmpss2 = callPackage ./pkgs/llvm-ompss2/default.nix { };
clangOmpss2Nanos6 = callPackage ./pkgs/llvm-ompss2/default.nix { useNanos6 = true; };
clangOmpss2Nodes = callPackage ./pkgs/llvm-ompss2/default.nix { useNodes = true; useOpenmp = true; };
clangOmpss2NodesOmpv = callPackage ./pkgs/llvm-ompss2/default.nix { useNodes = true; useOpenmpV = true; };
clangOmpss2Nanos6 = callPackage ./pkgs/llvm-ompss2/default.nix { ompss2rt = final.nanos6; };
clangOmpss2Nodes = callPackage ./pkgs/llvm-ompss2/default.nix { ompss2rt = final.nodes; openmp = final.openmp; };
clangOmpss2NodesOmpv = callPackage ./pkgs/llvm-ompss2/default.nix { ompss2rt = final.nodes; openmp = final.openmpv; };
clangOmpss2Unwrapped = callPackage ./pkgs/llvm-ompss2/clang.nix { };
cudainfo = prev.callPackage ./pkgs/cudainfo/default.nix { };
#extrae = callPackage ./pkgs/extrae/default.nix { }; # Broken and outdated
@@ -30,15 +56,13 @@ let
amd-uprof-driver = _prev.callPackage ./pkgs/amd-uprof/driver.nix { };
});
lmbench = callPackage ./pkgs/lmbench/default.nix { };
# Broken and unmantained
# mcxx = callPackage ./pkgs/mcxx/default.nix { };
mcxx = callPackage ./pkgs/mcxx/default.nix { };
meteocat-exporter = prev.callPackage ./pkgs/meteocat-exporter/default.nix { };
mpi = final.mpich; # Set MPICH as default
mpich = callPackage ./pkgs/mpich/default.nix { mpich = prev.mpich; };
nanos6 = callPackage ./pkgs/nanos6/default.nix { };
nanos6Debug = final.nanos6.override { enableDebug = true; };
nixtools = callPackage ./pkgs/nixtools/default.nix { };
nixgen = callPackage ./pkgs/nixgen/default.nix { };
# Broken because of pkgsStatic.libcap
# See: https://github.com/NixOS/nixpkgs/pull/268791
#nix-wrap = callPackage ./pkgs/nix-wrap/default.nix { };
@@ -49,17 +73,15 @@ let
osumb = callPackage ./pkgs/osu/default.nix { };
ovni = callPackage ./pkgs/ovni/default.nix { };
ovniGit = final.ovni.override { useGit = true; };
papi = callPackage ./pkgs/papi/default.nix { papi = prev.papi; };
paraverKernel = callPackage ./pkgs/paraver/kernel.nix { };
prometheus-slurm-exporter = prev.callPackage ./pkgs/slurm-exporter/default.nix { };
#pscom = callPackage ./pkgs/parastation/pscom.nix { }; # Unmaintaned
#psmpi = callPackage ./pkgs/parastation/psmpi.nix { }; # Unmaintaned
slurm = import ./pkgs/slurm/default.nix { slurm = prev.slurm; };
sonar = callPackage ./pkgs/sonar/default.nix { };
stdenvClangOmpss2 = final.stdenv.override { cc = final.buildPackages.clangOmpss2; allowedRequisites = null; };
stdenvClangOmpss2Nanos6 = final.stdenv.override { cc = final.buildPackages.clangOmpss2Nanos6; allowedRequisites = null; };
stdenvClangOmpss2Nodes = final.stdenv.override { cc = final.buildPackages.clangOmpss2Nodes; allowedRequisites = null; };
stdenvClangOmpss2NodesOmpv = final.stdenv.override { cc = final.buildPackages.clangOmpss2NodesOmpv; allowedRequisites = null; };
stdenvClangOmpss2 = final.stdenv.override { cc = final.clangOmpss2; allowedRequisites = null; };
stdenvClangOmpss2Nanos6 = final.stdenv.override { cc = final.clangOmpss2Nanos6; allowedRequisites = null; };
stdenvClangOmpss2Nodes = final.stdenv.override { cc = final.clangOmpss2Nodes; allowedRequisites = null; };
stdenvClangOmpss2NodesOmpv = final.stdenv.override { cc = final.clangOmpss2NodesOmpv; allowedRequisites = null; };
tagaspi = callPackage ./pkgs/tagaspi/default.nix { };
tampi = callPackage ./pkgs/tampi/default.nix { };
upc-qaire-exporter = prev.callPackage ./pkgs/upc-qaire-exporter/default.nix { };
@@ -67,7 +89,7 @@ let
};
tests = rec {
hwloc = callPackage ./test/bugs/hwloc.nix { };
#hwloc = callPackage ./test/bugs/hwloc.nix { }; # Broken, no /sys
#sigsegv = callPackage ./test/reproducers/sigsegv.nix { };
hello-c = callPackage ./test/compilers/hello-c.nix { };
hello-cpp = callPackage ./test/compilers/hello-cpp.nix { };
@@ -99,20 +121,12 @@ let
};
};
# For now, only build toplevel packages in CI/Hydra
pkgsTopLevel = filterAttrs (_: isDerivation) bscPkgs;
pkgs = filterAttrs (_: isDerivation) bscPkgs;
# Native build in that platform doesn't imply cross build works
canCrossCompile = platform: default: pkg:
(isDerivation pkg) &&
# If meta.cross is undefined, use default
(pkg.meta.cross or default) &&
(meta.availableOn final.pkgsCross.${platform}.stdenv.hostPlatform pkg);
# For now only RISC-V
crossSet = genAttrs [ "riscv64" ] (platform:
filterAttrs (_: canCrossCompile platform true)
final.pkgsCross.${platform}.bsc.pkgsTopLevel);
crossTargets = [ "riscv64" ];
cross = prev.lib.genAttrs crossTargets (target:
final.pkgsCross.${target}.bsc-ci.pkgs
);
buildList = name: paths:
final.runCommandLocal name { } ''
@@ -126,38 +140,27 @@ let
printf '%s\n' $deps >$out
'';
pkgsList = buildList "ci-pkgs" (builtins.attrValues pkgsTopLevel);
testsList = buildList "ci-tests" (collect isDerivation tests);
allList = buildList' "ci-all" [ pkgsList testsList ];
# For now only RISC-V
crossList = buildList "ci-cross"
(filter
(canCrossCompile "riscv64" false) # opt-in (pkgs with: meta.cross = true)
(builtins.attrValues crossSet.riscv64));
crossList = builtins.mapAttrs (t: v: buildList t (builtins.attrValues v)) cross;
pkgsList = buildList "ci-pkgs" (builtins.attrValues pkgs);
testList = buildList "ci-tests" (collect isDerivation tests);
all = buildList' "ci-all" [ pkgsList testList ];
in bscPkgs // {
lib = prev.lib // {
maintainers = prev.lib.maintainers // {
bsc = import ./pkgs/maintainers.nix;
};
};
lib = prev.lib // {
bsc.maintainers = import ./maintainers/maintainer-list.nix;
};
# Prevent accidental usage of bsc-ci attribute
bsc-ci = throw "the bsc-ci attribute is deprecated, use bsc.ci";
# Prevent accidental usage of bsc attribute
bsc = throw "the bsc attribute is deprecated, packages are now in the root";
# Internal for our CI tests
bsc = {
# CI targets for nix build
ci = { pkgs = pkgsList; tests = testsList; all = allList; cross = crossList; };
# Direct access to package sets
tests = tests;
pkgs = bscPkgs;
pkgsTopLevel = pkgsTopLevel;
cross = crossSet;
# Hydra uses attribute sets of pkgs
hydraJobs = { tests = tests; pkgs = pkgsTopLevel; cross = crossSet; };
bsc-ci = {
inherit pkgs pkgsList;
inherit tests testList;
inherit cross crossList;
inherit all;
};
}

View File

@@ -1,212 +0,0 @@
#!/usr/bin/env bash
set -Eeuo pipefail
PACKAGE="agenix"
function show_help () {
echo "$PACKAGE - edit and rekey age secret files"
echo " "
echo "$PACKAGE -e FILE [-i PRIVATE_KEY]"
echo "$PACKAGE -r [-i PRIVATE_KEY]"
echo ' '
echo 'options:'
echo '-h, --help show help'
# shellcheck disable=SC2016
echo '-e, --edit FILE edits FILE using $EDITOR'
echo '-r, --rekey re-encrypts all secrets with specified recipients'
echo '-d, --decrypt FILE decrypts FILE to STDOUT'
echo '-i, --identity identity to use when decrypting'
echo '-v, --verbose verbose output'
echo ' '
echo 'FILE an age-encrypted file'
echo ' '
echo 'PRIVATE_KEY a path to a private SSH key used to decrypt file'
echo ' '
echo 'EDITOR environment variable of editor to use when editing FILE'
echo ' '
echo 'If STDIN is not interactive, EDITOR will be set to "cp /dev/stdin"'
echo ' '
echo 'RULES environment variable with path to Nix file specifying recipient public keys.'
echo "Defaults to './secrets.nix'"
echo ' '
echo "agenix version: @version@"
echo "age binary path: @ageBin@"
echo "age version: $(@ageBin@ --version)"
}
function warn() {
printf '%s\n' "$*" >&2
}
function err() {
warn "$*"
exit 1
}
test $# -eq 0 && (show_help && exit 1)
REKEY=0
DECRYPT_ONLY=0
DEFAULT_DECRYPT=(--decrypt)
while test $# -gt 0; do
case "$1" in
-h|--help)
show_help
exit 0
;;
-e|--edit)
shift
if test $# -gt 0; then
export FILE=$1
else
echo "no FILE specified"
exit 1
fi
shift
;;
-i|--identity)
shift
if test $# -gt 0; then
DEFAULT_DECRYPT+=(--identity "$1")
else
echo "no PRIVATE_KEY specified"
exit 1
fi
shift
;;
-r|--rekey)
shift
REKEY=1
;;
-d|--decrypt)
shift
DECRYPT_ONLY=1
if test $# -gt 0; then
export FILE=$1
else
echo "no FILE specified"
exit 1
fi
shift
;;
-v|--verbose)
shift
set -x
;;
*)
show_help
exit 1
;;
esac
done
RULES=${RULES:-./secrets.nix}
function cleanup {
if [ -n "${CLEARTEXT_DIR+x}" ]
then
rm -rf -- "$CLEARTEXT_DIR"
fi
if [ -n "${REENCRYPTED_DIR+x}" ]
then
rm -rf -- "$REENCRYPTED_DIR"
fi
}
trap "cleanup" 0 2 3 15
function keys {
(@nixInstantiate@ --json --eval --strict -E "(let rules = import $RULES; in rules.\"$1\".publicKeys)" | @jqBin@ -r .[]) || exit 1
}
function armor {
(@nixInstantiate@ --json --eval --strict -E "(let rules = import $RULES; in (builtins.hasAttr \"armor\" rules.\"$1\" && rules.\"$1\".armor))") || exit 1
}
function decrypt {
FILE=$1
KEYS=$2
if [ -z "$KEYS" ]
then
err "There is no rule for $FILE in $RULES."
fi
if [ -f "$FILE" ]
then
DECRYPT=("${DEFAULT_DECRYPT[@]}")
if [[ "${DECRYPT[*]}" != *"--identity"* ]]; then
if [ -f "$HOME/.ssh/id_rsa" ]; then
DECRYPT+=(--identity "$HOME/.ssh/id_rsa")
fi
if [ -f "$HOME/.ssh/id_ed25519" ]; then
DECRYPT+=(--identity "$HOME/.ssh/id_ed25519")
fi
fi
if [[ "${DECRYPT[*]}" != *"--identity"* ]]; then
err "No identity found to decrypt $FILE. Try adding an SSH key at $HOME/.ssh/id_rsa or $HOME/.ssh/id_ed25519 or using the --identity flag to specify a file."
fi
@ageBin@ "${DECRYPT[@]}" -- "$FILE" || exit 1
fi
}
function edit {
FILE=$1
KEYS=$(keys "$FILE") || exit 1
ARMOR=$(armor "$FILE") || exit 1
CLEARTEXT_DIR=$(@mktempBin@ -d)
CLEARTEXT_FILE="$CLEARTEXT_DIR/$(basename -- "$FILE")"
DEFAULT_DECRYPT+=(-o "$CLEARTEXT_FILE")
decrypt "$FILE" "$KEYS" || exit 1
[ ! -f "$CLEARTEXT_FILE" ] || cp -- "$CLEARTEXT_FILE" "$CLEARTEXT_FILE.before"
[ -t 0 ] || EDITOR='cp -- /dev/stdin'
$EDITOR "$CLEARTEXT_FILE"
if [ ! -f "$CLEARTEXT_FILE" ]
then
warn "$FILE wasn't created."
return
fi
[ -f "$FILE" ] && [ "$EDITOR" != ":" ] && @diffBin@ -q -- "$CLEARTEXT_FILE.before" "$CLEARTEXT_FILE" && warn "$FILE wasn't changed, skipping re-encryption." && return
ENCRYPT=()
if [[ "$ARMOR" == "true" ]]; then
ENCRYPT+=(--armor)
fi
while IFS= read -r key
do
if [ -n "$key" ]; then
ENCRYPT+=(--recipient "$key")
fi
done <<< "$KEYS"
REENCRYPTED_DIR=$(@mktempBin@ -d)
REENCRYPTED_FILE="$REENCRYPTED_DIR/$(basename -- "$FILE")"
ENCRYPT+=(-o "$REENCRYPTED_FILE")
@ageBin@ "${ENCRYPT[@]}" <"$CLEARTEXT_FILE" || exit 1
mkdir -p -- "$(dirname -- "$FILE")"
mv -f -- "$REENCRYPTED_FILE" "$FILE"
}
function rekey {
FILES=$( (@nixInstantiate@ --json --eval -E "(let rules = import $RULES; in builtins.attrNames rules)" | @jqBin@ -r .[]) || exit 1)
for FILE in $FILES
do
warn "rekeying $FILE..."
EDITOR=: edit "$FILE"
cleanup
done
}
[ $REKEY -eq 1 ] && rekey && exit 0
[ $DECRYPT_ONLY -eq 1 ] && DEFAULT_DECRYPT+=("-o" "-") && decrypt "${FILE}" "$(keys "$FILE")" && exit 0
edit "$FILE" && cleanup && exit 0

View File

@@ -1,66 +0,0 @@
{
lib,
stdenv,
age,
jq,
nix,
mktemp,
diffutils,
replaceVars,
ageBin ? "${age}/bin/age",
shellcheck,
}:
let
bin = "${placeholder "out"}/bin/agenix";
in
stdenv.mkDerivation rec {
pname = "agenix";
version = "0.15.0";
src = replaceVars ./agenix.sh {
inherit ageBin version;
jqBin = "${jq}/bin/jq";
nixInstantiate = "${nix}/bin/nix-instantiate";
mktempBin = "${mktemp}/bin/mktemp";
diffBin = "${diffutils}/bin/diff";
};
dontUnpack = true;
doInstallCheck = true;
installCheckInputs = [ shellcheck ];
postInstallCheck = ''
shellcheck ${bin}
${bin} -h | grep ${version}
test_tmp=$(mktemp -d 2>/dev/null || mktemp -d -t 'mytmpdir')
export HOME="$test_tmp/home"
export NIX_STORE_DIR="$test_tmp/nix/store"
export NIX_STATE_DIR="$test_tmp/nix/var"
mkdir -p "$HOME" "$NIX_STORE_DIR" "$NIX_STATE_DIR"
function cleanup {
rm -rf "$test_tmp"
}
trap "cleanup" 0 2 3 15
mkdir -p $HOME/.ssh
cp -r "${./example}" $HOME/secrets
chmod -R u+rw $HOME/secrets
(
umask u=rw,g=r,o=r
cp ${./example_keys/user1.pub} $HOME/.ssh/id_ed25519.pub
chown $UID $HOME/.ssh/id_ed25519.pub
)
(
umask u=rw,g=,o=
cp ${./example_keys/user1} $HOME/.ssh/id_ed25519
chown $UID $HOME/.ssh/id_ed25519
)
cd $HOME/secrets
test $(${bin} -d secret1.age) = "hello"
'';
installPhase = ''
install -D $src ${bin}
'';
meta.description = "age-encrypted secrets for NixOS";
}

View File

@@ -1,7 +0,0 @@
age-encryption.org/v1
-> ssh-ed25519 V3XmEA zirqdzZZ1E+sedBn7fbEHq4ntLEkokZ4GctarBBOHXY
Rvs5YHaAUeCZyNwPedubPcHClWYIuXXWA5zadXPWY6w
-> ssh-ed25519 KLPP8w BVp4rDkOYSQyn8oVeHFeinSqW+pdVtxBF9+5VM1yORY
bMwppAi8Nhz0328taU4AzUkTVyWtSLvFZG6c5W/Fs78
--- xCbqLhXAcOziO2wmbjTiSQfZvt5Rlsc4SCvF+iEzpQA
<EFBFBD>KB<EFBFBD><EFBFBD>/<2F>Z<><5A>r<EFBFBD>%<01><>4<EFBFBD><34><EFBFBD>Mq5<71><35>_<EFBFBD><5F>ݒ<><DD92><EFBFBD><EFBFBD><EFBFBD>11 ܨqM;& <20><>Lr<4C><72><EFBFBD>f<EFBFBD><66><EFBFBD>]>N

View File

@@ -1,7 +0,0 @@
-----BEGIN AGE ENCRYPTED FILE-----
YWdlLWVuY3J5cHRpb24ub3JnL3YxCi0+IHNzaC1lZDI1NTE5IFYzWG1FQSBpZkZW
aFpLNnJxc0VUMHRmZ2dZS0pjMGVENnR3OHd5K0RiT1RjRUhibFZBCnN5UG5vUjA3
SXpsNGtiVUw4T0tIVFo5Wkk5QS9NQlBndzVvektiQ0ozc0kKLS0tIGxyY1Q4dEZ1
VGZEanJyTFNta2JNRmpZb2FnK2JyS1hSVml1UGdMNWZKQXMKYla+wTXcRedyZoEb
LVWaSx49WoUTU0KBPJg9RArxaeC23GoCDzR/aM/1DvYU
-----END AGE ENCRYPTED FILE-----

View File

@@ -1,9 +0,0 @@
age-encryption.org/v1
-> ssh-ed25519 KLPP8w s1DYZRlZuSsyhmZCF1lFB+E9vB8bZ/+ZhBRlx8nprwE
nmYVCsVBrX2CFXXPU+D+bbkkIe/foofp+xoUrg9DHZw
-> ssh-ed25519 V3XmEA Pwv3oCwcY0DX8rY48UNfsj9RumWsn4dbgorYHCwObgI
FKxRYkL3JHtJxUwymWDF0rAtJ33BivDI6IfPsfumM90
-> V'v(/u$-grease em/Vgf 2qDuk
7I3iiQLPGi1COML9u/JeYkr7EqbSLoU
--- 57WJRigUGtmcObrssS3s4PvmR8wgh1AOC/ijJn1s3xI
<EFBFBD>'K<>ƷY&<26>7G<37>O<EFBFBD><4F>Fj<13>k<EFBFBD>X<EFBFBD><58>BnuJ<75><4A>:9<>(<><7F><EFBFBD>X<EFBFBD>#<23>A<EFBFBD><41><EFBFBD><EFBFBD>ڧj<DAA7>,<02>_<17><><EFBFBD>?<3F>Z<EFBFBD><17>v<EFBFBD><76>V<EFBFBD>96]oks~%<25>c <04>e^C<>%JQ5<51><H<>z}<7D>C<EFBFBD>,<2C>p<EFBFBD><70>*!W<><57><EFBFBD>A<EFBFBD><41><EFBFBD>҅dC<15>K)<10><>-<2D>y

Binary file not shown.

View File

@@ -1,5 +0,0 @@
age-encryption.org/v1
-> ssh-ed25519 V3XmEA OB4+1FbPhQ3r6iGksM7peWX5it8NClpXIq/o5nnP7GA
FmHVUj+A5i5+bDFgySQskmlvynnosJiWUTJmBRiNA9I
--- tP+3mFVtd7ogVu1Lkboh55zoi5a77Ht08Uc/QuIviv4
<EFBFBD><EFBFBD>X<EFBFBD>{<7B><>O<EFBFBD><4F><1F><04>tMXx<58>vӪ(<28>I<EFBFBD>myP<79><50><EFBFBD><EFBFBD>+3<>S3i

View File

@@ -1,23 +0,0 @@
let
user1 = "ssh-ed25519 AAAAC3NzaC1lZDI1NTE5AAAAIL0idNvgGiucWgup/mP78zyC23uFjYq0evcWdjGQUaBH";
system1 = "ssh-ed25519 AAAAC3NzaC1lZDI1NTE5AAAAIPJDyIr/FSz1cJdcoW69R+NrWzwGK/+3gJpqD1t8L2zE";
in
{
"secret1.age".publicKeys = [
user1
system1
];
"secret2.age".publicKeys = [ user1 ];
"passwordfile-user1.age".publicKeys = [
user1
system1
];
"-leading-hyphen-filename.age".publicKeys = [
user1
system1
];
"armored-secret.age" = {
publicKeys = [ user1 ];
armor = true;
};
}

View File

@@ -1,7 +0,0 @@
-----BEGIN OPENSSH PRIVATE KEY-----
b3BlbnNzaC1rZXktdjEAAAAABG5vbmUAAAAEbm9uZQAAAAAAAAABAAAAMwAAAAtzc2gtZW
QyNTUxOQAAACDyQ8iK/xUs9XCXXKFuvUfja1s8Biv/t4Caag9bfC9sxAAAAJA3yvCWN8rw
lgAAAAtzc2gtZWQyNTUxOQAAACDyQ8iK/xUs9XCXXKFuvUfja1s8Biv/t4Caag9bfC9sxA
AAAEA+J2V6AG1NriAIvnNKRauIEh1JE9HSdhvKJ68a5Fm0w/JDyIr/FSz1cJdcoW69R+Nr
WzwGK/+3gJpqD1t8L2zEAAAADHJ5YW50bUBob21lMQE=
-----END OPENSSH PRIVATE KEY-----

View File

@@ -1 +0,0 @@
ssh-ed25519 AAAAC3NzaC1lZDI1NTE5AAAAIPJDyIr/FSz1cJdcoW69R+NrWzwGK/+3gJpqD1t8L2zE

View File

@@ -1,7 +0,0 @@
-----BEGIN OPENSSH PRIVATE KEY-----
b3BlbnNzaC1rZXktdjEAAAAABG5vbmUAAAAEbm9uZQAAAAAAAAABAAAAMwAAAAtzc2gtZW
QyNTUxOQAAACC9InTb4BornFoLqf5j+/M8gtt7hY2KtHr3FnYxkFGgRwAAAJC2JJ8htiSf
IQAAAAtzc2gtZWQyNTUxOQAAACC9InTb4BornFoLqf5j+/M8gtt7hY2KtHr3FnYxkFGgRw
AAAEDxt5gC/s53IxiKAjfZJVCCcFIsdeERdIgbYhLO719+Kb0idNvgGiucWgup/mP78zyC
23uFjYq0evcWdjGQUaBHAAAADHJ5YW50bUBob21lMQE=
-----END OPENSSH PRIVATE KEY-----

View File

@@ -1 +0,0 @@
ssh-ed25519 AAAAC3NzaC1lZDI1NTE5AAAAIL0idNvgGiucWgup/mP78zyC23uFjYq0evcWdjGQUaBH

View File

@@ -1,23 +0,0 @@
#!/bin/sh
set -e
# All operations are done relative to root
GITROOT=$(git rev-parse --show-toplevel)
cd "$GITROOT"
REVISION=${1:-main}
TMPCLONE=$(mktemp -d)
trap "rm -rf ${TMPCLONE}" EXIT
git clone https://github.com/ryantm/agenix.git --revision="$REVISION" "$TMPCLONE" --depth=1
cp "${TMPCLONE}/pkgs/agenix.sh" pkgs/agenix/agenix.sh
cp "${TMPCLONE}/pkgs/agenix.nix" pkgs/agenix/default.nix
sed -i 's#../example#./example#' pkgs/agenix/default.nix
cp "${TMPCLONE}/example/"* pkgs/agenix/example/
cp "${TMPCLONE}/example_keys/"* pkgs/agenix/example_keys/
cp "${TMPCLONE}/modules/age.nix" m/module/agenix.nix

View File

@@ -47,7 +47,6 @@ in
inherit version;
src = uprofSrc;
dontStrip = true;
strictDeps = true;
phases = [ "installPhase" "fixupPhase" ];
nativeBuildInputs = [ autoPatchelfHook radare2 ];
buildInputs = [
@@ -87,13 +86,4 @@ in
patchelf --add-needed libnuma.so $out/bin/AMDuProfPcm
set +x
'';
meta = {
description = "Performance analysis tool-suite for x86 based applications";
homepage = "https://www.amd.com/es/developer/uprof.html";
platforms = [ "x86_64-linux" ];
license = lib.licenses.unfree;
maintainers = with lib.maintainers.bsc; [ rarias varcila ];
};
}

View File

@@ -18,9 +18,8 @@ in stdenv.mkDerivation {
set +x
'';
hardeningDisable = [ "pic" "format" ];
strictDeps = true;
nativeBuildInputs = kernel.moduleBuildDependencies;
patches = [ ./makefile.patch ./hrtimer.patch ./remove-wr-rdmsrq.patch ];
patches = [ ./makefile.patch ./hrtimer.patch ];
makeFlags = [
"KERNEL_VERSION=${kernel.modDirVersion}"
"KERNEL_DIR=${kernel.dev}/lib/modules/${kernel.modDirVersion}/build"
@@ -30,7 +29,5 @@ in stdenv.mkDerivation {
description = "AMD Power Profiler Driver";
homepage = "https://www.amd.com/es/developer/uprof.html";
platforms = lib.platforms.linux;
license = lib.licenses.unfree;
maintainers = with lib.maintainers.bsc; [ rarias varcila ];
};
}

View File

@@ -1,20 +0,0 @@
diff --git a/inc/PwrProfAsm.h b/inc/PwrProfAsm.h
index d77770a..c93a0e9 100644
--- a/inc/PwrProfAsm.h
+++ b/inc/PwrProfAsm.h
@@ -347,6 +347,7 @@
#endif
+/*
#define rdmsrq(msr,val1,val2,val3,val4) ({ \
__asm__ __volatile__( \
"rdmsr\n" \
@@ -362,6 +363,7 @@
:"c"(msr), "a"(val1), "d"(val2), "S"(val3), "D"(val4) \
); \
})
+*/
#define rdmsrpw(msr,val1,val2,val3,val4) ({ \
__asm__ __volatile__( \

View File

@@ -59,13 +59,12 @@ stdenv.mkDerivation rec {
];
hardeningDisable = [ "all" ];
dontStrip = true;
strictDeps = true;
meta = {
meta = with lib; {
homepage = "https://gitlab.pm.bsc.es/rarias/bench6";
description = "Set of micro-benchmarks for OmpSs-2 and several mini-apps";
maintainers = with lib.maintainers.bsc; [ rarias ];
platforms = lib.platforms.linux;
license = lib.licenses.gpl3Plus;
maintainers = with maintainers.bsc; [ rarias ];
platforms = platforms.linux;
license = licenses.gpl3;
};
}

View File

@@ -16,13 +16,11 @@ stdenv.mkDerivation {
};
nativeBuildInputs = [ cmake ];
strictDeps = true;
meta = {
meta = with lib; {
homepage = "https://github.com/rodarima/bigotes";
description = "Versatile benchmark tool";
maintainers = with lib.maintainers.bsc; [ rarias ];
platforms = lib.platforms.linux;
license = lib.licenses.gpl3Plus;
maintainers = with maintainers.bsc; [ rarias ];
platforms = platforms.linux;
license = licenses.gpl3;
};
}

View File

@@ -1,6 +1,5 @@
{
stdenv
, lib
, cudatoolkit
, cudaPackages
, autoAddDriverRunpath
@@ -10,13 +9,10 @@
stdenv.mkDerivation (finalAttrs: {
name = "cudainfo";
src = ./.;
strictDeps = true;
nativeBuildInputs = [
cudatoolkit # Required for nvcc
autoAddDriverRunpath
];
buildInputs = [
(lib.getOutput "static" cudaPackages.cuda_cudart) # Required for -lcudart_static
cudatoolkit # Required for nvcc
cudaPackages.cuda_cudart.static # Required for -lcudart_static
autoAddDriverRunpath
];
installPhase = ''
mkdir -p $out/bin
@@ -26,7 +22,6 @@ stdenv.mkDerivation (finalAttrs: {
name = "cudainfo-test";
requiredSystemFeatures = [ "cuda" ];
dontBuild = true;
strictDeps = true;
nativeCheckInputs = [
finalAttrs.finalPackage # The cudainfo package from above
strace # When it fails, it will show the trace
@@ -45,9 +40,4 @@ stdenv.mkDerivation (finalAttrs: {
'';
installPhase = "touch $out";
};
meta = {
platforms = [ "x86_64-linux" ];
maintainers = with lib.maintainers.bsc; [ rarias ];
};
})

View File

@@ -20,7 +20,7 @@
#, python3Packages
, installShellFiles
, symlinkJoin
, enablePapi ? true
, enablePapi ? stdenv.hostPlatform == stdenv.buildPlatform # Disabled when cross-compiling
}:
let
@@ -112,12 +112,11 @@ stdenv.mkDerivation rec {
# else []
# );
meta = {
meta = with lib; {
homepage = "https://github.com/bsc-performance-tools/extrae";
description = "Instrumentation framework to generate execution traces of the most used parallel runtimes";
maintainers = [ ];
broken = true;
platforms = lib.platforms.linux;
license = lib.licenses.lgpl21Plus;
maintainers = with maintainers.bsc; [ rarias ];
platforms = platforms.linux;
license = licenses.lgpl21Plus;
};
}

View File

@@ -9,6 +9,7 @@
, automake
, libtool
, mpi
, rsync
, gfortran
}:
@@ -33,7 +34,6 @@ stdenv.mkDerivation rec {
};
enableParallelBuilding = true;
strictDeps = true;
patches = [ ./rdma-core.patch ./max-mem.patch ];
@@ -44,33 +44,21 @@ stdenv.mkDerivation rec {
configureFlags = [
"--with-infiniband=${rdma-core-all}"
"--with-mpi=yes" # fixes mpi detection when cross-compiling
"--with-mpi=${mpiAll}"
"--with-slurm"
"CFLAGS=-fPIC"
"CXXFLAGS=-fPIC"
];
nativeBuildInputs = [
autoconf
automake
gfortran
libtool
];
buildInputs = [
slurm
mpiAll
rdma-core-all
];
buildInputs = [ slurm mpiAll rdma-core-all autoconf automake libtool rsync gfortran ];
hardeningDisable = [ "all" ];
meta = {
meta = with lib; {
homepage = "https://pm.bsc.es/gitlab/interoperability/extern/GPI-2";
description = "GPI-2 extended for supporting Task-Aware GASPI (TAGASPI) library";
maintainers = with lib.maintainers.bsc; [ rarias ];
platforms = lib.platforms.linux;
license = lib.licenses.gpl3Plus;
cross = false; # infiniband detection does not work
maintainers = with maintainers.bsc; [ rarias ];
platforms = platforms.linux;
license = licenses.gpl3;
};
}

View File

@@ -61,11 +61,11 @@ stdenv.mkDerivation rec {
popd
'';
meta = {
meta = with lib; {
homepage = "https://www.intel.com/content/www/us/en/developer/tools/overview.html";
description = "Intel compiler";
maintainers = with lib.maintainers.bsc; [ rarias ];
platforms = lib.platforms.linux;
license = lib.licenses.unfree;
maintainers = with maintainers.bsc; [ rarias ];
platforms = platforms.linux;
license = licenses.unfree;
};
}

View File

@@ -145,12 +145,12 @@ in
popd
'';
meta = {
meta = with lib; {
homepage = "https://www.intel.com/content/www/us/en/developer/tools/overview.html";
description = "Intel compiler";
maintainers = with lib.maintainers.bsc; [ rarias ];
platforms = lib.platforms.linux;
license = lib.licenses.unfree;
maintainers = with maintainers.bsc; [ rarias ];
platforms = platforms.linux;
license = licenses.unfree;
};
}

View File

@@ -103,11 +103,11 @@ stdenv.mkDerivation rec {
echo "Patched RPATH in libfabric.so to: $(patchelf --print-rpath $out/lib/libfabric.so)"
'';
meta = {
meta = with lib; {
homepage = "https://www.intel.com/content/www/us/en/developer/tools/overview.html";
description = "Intel MPI";
maintainers = with lib.maintainers.bsc; [ rarias ];
platforms = lib.platforms.linux;
license = lib.licenses.unfree;
description = "Intel compiler";
maintainers = with maintainers.bsc; [ rarias ];
platforms = platforms.linux;
license = licenses.unfree;
};
}

View File

@@ -10,7 +10,7 @@
, zlib
, autoPatchelfHook
, libfabric
, gcc
, gcc13
, wrapCCWith
}:
@@ -26,12 +26,7 @@
let
meta = {
description = "Intel oneapi hpckit package component";
homepage = "https://www.intel.com/content/www/us/en/developer/tools/oneapi/hpc-toolkit-download.html";
license = lib.licenses.unfree;
maintainers = with lib.maintainers.bsc; [ abonerib ];
};
gcc = gcc13;
v = {
hpckit = "2023.1.0";
@@ -48,11 +43,15 @@ let
];
phases = [ "installPhase" ];
installPhase = ''
runHook preInstall
awk -F': ' '\
BEGIN { print "[ {" } \
NR>1 && /^Package: / { print "} {"; } \
/: / { printf "%s = \"%s\";\n", $1, $2 } \
END { print "} ]" }' $srcs > $out
runHook postInstall
'';
};
@@ -86,14 +85,23 @@ let
nativeBuildInputs = [ dpkg ];
phases = [ "installPhase" ];
installPhase = ''
runHook preInstall
mkdir -p $out
for src in $srcs; do
echo "unpacking $src"
dpkg -x $src $out
done
runHook postInstall
'';
inherit meta;
meta = {
description = "";
homepage = "";
license = lib.licenses.unfree;
maintainers = with lib.maintainers; [ ];
};
};
joinDebs = name: names:
@@ -128,8 +136,9 @@ let
phases = [ "installPhase" "fixupPhase" ];
dontStrip = true;
strictDeps = true;
installPhase = ''
runHook preInstall
mkdir -p $out/{bin,etc,lib,include}
mkdir -p $out/share/man
@@ -146,6 +155,8 @@ let
# Broken due missing libze_loader.so.1
rsync -a --exclude IMB-MPI1-GPU bin/ $out/bin/
popd
runHook postInstall
'';
preFixup = ''
for i in $out/bin/mpi* ; do
@@ -154,7 +165,12 @@ let
done
'';
inherit meta;
meta = {
description = "";
homepage = "";
license = lib.licenses.unfree;
maintainers = with lib.maintainers; [ ];
};
};
intel-tbb = stdenv.mkDerivation rec {
@@ -180,11 +196,12 @@ let
];
phases = [ "installPhase" "fixupPhase" ];
dontStrip = true;
strictDeps = true;
autoPatchelfIgnoreMissingDeps = [ "libhwloc.so.5" ];
installPhase = ''
runHook preInstall
mkdir -p $out/lib
cd $src
@@ -193,9 +210,16 @@ let
# Libraries
rsync -a lib/intel64/gcc4.8/ $out/lib/
popd
runHook postInstall
'';
inherit meta;
meta = {
description = "";
homepage = "";
license = lib.licenses.unfree;
maintainers = with lib.maintainers; [ ];
};
};
intel-compiler-shared = stdenv.mkDerivation rec {
@@ -224,11 +248,12 @@ let
];
phases = [ "installPhase" "fixupPhase" ];
dontStrip = true;
strictDeps = true;
autoPatchelfIgnoreMissingDeps = [ "libsycl.so.6" ];
installPhase = ''
runHook preInstall
mkdir -p $out/{bin,lib,include}
mkdir -p $out/share/man
@@ -253,9 +278,16 @@ let
rsync -a compiler/include/ $out/include/
popd
popd
runHook postInstall
'';
inherit meta;
meta = {
description = "";
homepage = "";
license = lib.licenses.unfree;
maintainers = with lib.maintainers; [ ];
};
};
@@ -292,9 +324,10 @@ let
phases = [ "installPhase" "fixupPhase" ];
dontStrip = true;
strictDeps = true;
installPhase = ''
runHook preInstall
mkdir -p $out/{bin,lib,include}
mkdir -p $out/share/man
@@ -320,10 +353,18 @@ let
# Fix lib_lin
ln -s $out/lib $out/lib_lin
popd
runHook postInstall
'';
inherit meta;
meta = {
description = "";
homepage = "";
license = lib.licenses.unfree;
maintainers = with lib.maintainers; [ ];
};
};
intel-compiler = stdenv.mkDerivation rec {
@@ -381,9 +422,10 @@ let
phases = [ "installPhase" "fixupPhase" ];
dontStrip = true;
strictDeps = true;
installPhase = ''
runHook preInstall
mkdir -p $out/{bin,lib}
mkdir -p $out/share/man
@@ -411,9 +453,16 @@ let
# Manuals
rsync -a documentation/en/man/common/ $out/share/man/
popd
runHook postInstall
'';
inherit meta;
meta = {
description = "";
homepage = "";
license = lib.licenses.unfree;
maintainers = with lib.maintainers; [ ];
};
};
wrapIntel = { cc, mygcc, extraBuild ? "", extraInstall ? "" }:

View File

@@ -1,9 +1,9 @@
{
stdenv
, llvmPackages_latest
llvmPackages_latest
, lib
, fetchFromGitHub
, cmake
, bash
, python3
, perl
, which
@@ -11,26 +11,24 @@
, libffi
, zlib
, pkg-config
, gcc # needed to set the rpath of libstdc++ for clang-tblgen
, enableDebug ? false
, useGit ? false
, gitUrl ? "ssh://git@bscpm04.bsc.es/llvm-ompss/llvm-mono.git"
, gitBranch ? "master"
, gitCommit ? "872ba63f86edaefc9787984ef3fae9f2f94e0124" # github-release-2025.11
, gitCommit ? "880e2341c56bad1dc14e8c369fb3356bec19018e"
}:
let
llvmPackages = llvmPackages_latest;
llvmStdenv = llvmPackages.stdenv;
# needed to set the rpath of libstdc++ for clang-tblgen
gcc = stdenv.cc;
stdenv = llvmPackages_latest.stdenv;
release = rec {
version = "2025.11";
version = "2025.06";
src = fetchFromGitHub {
owner = "bsc-pm";
repo = "llvm";
rev = "refs/tags/github-release-${version}";
hash = "sha256-UgwMTUkM9Z87dDH205swZFBeFhrcbLAxginViG40pBM=";
hash = "sha256-ww9PpRmtz/M9IyLiZ8rAehx2UW4VpQt+svf4XfKBzKo=";
};
};
@@ -45,12 +43,11 @@ let
source = if (useGit) then git else release;
in llvmStdenv.mkDerivation {
in stdenv.mkDerivation {
pname = "clang-ompss2";
inherit (source) src version;
enableParallelBuilding = true;
strictDeps = true;
passthru = {
CC = "clang";
@@ -63,12 +60,13 @@ in llvmStdenv.mkDerivation {
};
nativeBuildInputs = [
bash
cmake
elfutils
llvmPackages.lld
perl
llvmPackages_latest.lld
pkg-config
python3
perl
which
zlib
];
@@ -99,13 +97,8 @@ in llvmStdenv.mkDerivation {
cd build
cmakeDir="../llvm"
cmakeFlagsArray=(
"-DLLVM_HOST_TRIPLE=${llvmStdenv.targetPlatform.config}"
'' + (if "${llvmStdenv.targetPlatform.config}" == "riscv64-unknown-linux-gnu" then ''
"-DLLVM_DEFAULT_TARGET_TRIPLE=riscv64-unknown-linux-gnu"
"-DLLVM_TARGETS_TO_BUILD=RISCV"
'' else ''
"-DLLVM_HOST_TRIPLE=${stdenv.targetPlatform.config}"
"-DLLVM_TARGETS_TO_BUILD=host"
'') + ''
"-DLLVM_BUILD_LLVM_DYLIB=ON"
"-DLLVM_LINK_LLVM_DYLIB=ON"
# Required to run clang-ast-dump and clang-tblgen during build
@@ -114,8 +107,7 @@ in llvmStdenv.mkDerivation {
"-DCMAKE_CXX_FLAGS_DEBUG=-g -ggnu-pubnames"
"-DCMAKE_EXE_LINKER_FLAGS_DEBUG=-Wl,--gdb-index"
"-DLLVM_LIT_ARGS=-sv --xunit-xml-output=xunit.xml"
"-DLLVM_ENABLE_PROJECTS=clang;lld"
"-DLLVM_ENABLE_RUNTIMES=compiler-rt"
"-DLLVM_ENABLE_PROJECTS=clang;compiler-rt;lld"
"-DLLVM_ENABLE_ASSERTIONS=ON"
"-DLLVM_INSTALL_TOOLCHAIN_ONLY=ON"
"-DCMAKE_INSTALL_BINDIR=bin"
@@ -134,12 +126,4 @@ in llvmStdenv.mkDerivation {
# nanos6 installation, but this is would require a recompilation of clang each
# time nanos6 is changed. Better to use the environment variable NANOS6_HOME,
# and specify nanos6 at run time.
meta = {
homepage = "https://gitlab.pm.bsc.es/llvm-ompss/llvm-mono";
description = "C language family frontend for LLVM (for OmpSs-2)";
maintainers = with lib.maintainers.bsc; [ rpenacob ];
platforms = lib.platforms.linux;
license = [ lib.licenses.asl20 lib.licenses.llvm-exception ];
};
}

View File

@@ -3,61 +3,44 @@
, lib
, gcc
, clangOmpss2Unwrapped
, openmp
, useOpenmp ? false
, openmpv
, useOpenmpV ? false
, nanos6
, useNanos6 ? false
, nodes
, useNodes ? false
, openmp ? null
, wrapCCWith
, llvmPackages_latest
, ompss2rt ? null
}:
with lib;
let
getSplice = target: pkg: if pkg ? "__spliced" && pkg.__spliced ? target then pkg.__spliced."${target}" else pkg;
getSpliceTargetTarget = getSplice "targetTarget";
omp = if useOpenmp then openmp else if useOpenmpV then openmpv else null;
ompss2rtUnspliced = if useNanos6 then nanos6 else if useNodes then nodes else null;
ompss2rt = getSpliceTargetTarget ompss2rtUnspliced;
usingNodesAndOmpv = omp != null && ompss2rt != null && (omp.pname == "openmp-v" && ompss2rt.pname == "nodes");
sameNosvUnspliced = omp != null && ompss2rtUnspliced != null && omp.nosv == ompss2rtUnspliced.nosv;
sameNosvSpliced = (getSpliceTargetTarget omp.nosv) == ompss2rt.nosv;
usingNodesAndOmpv = (openmp.pname == "openmp-v" && ompss2rt.pname == "nodes");
sameNosv = openmp.nosv == ompss2rt.nosv;
in
assert assertMsg (usingNodesAndOmpv -> sameNosvUnspliced) "OpenMP-V and NODES must share the same nOS-V before splice";
assert assertMsg (usingNodesAndOmpv -> sameNosvSpliced) "OpenMP-V and NODES must share the same nOS-V after splice";
assert assertMsg (useOpenmp -> !useOpenmpV) "Either OpenMP or OpenMP-V may be enabled, but not both";
assert assertMsg (useNanos6 -> !useNodes) "Either Nanos6 or NODES may be enabled, but not both";
assert assertMsg (usingNodesAndOmpv -> sameNosv) "OpenMP-V and NODES must share the same nOS-V";
let
homevar = if ompss2rt.pname == "nanos6" then "NANOS6_HOME" else "NODES_HOME";
rtname = if ompss2rt.pname == "nanos6" then "libnanos6" else "libnodes";
ompname = if omp.pname == "openmp-v" then "libompv" else "libomp";
ompname = if openmp.pname == "openmp-v" then "libompv" else "libomp";
# We need to replace the lld linker from bintools with our linker just built,
# otherwise we run into incompatibility issues when mixing compiler and linker
# versions.
bintools-unwrapped = llvmPackages_latest.bintools-unwrapped.override {
bintools-unwrapped = llvmPackages_latest.tools.bintools-unwrapped.override {
lld = clangOmpss2Unwrapped;
};
bintools = llvmPackages_latest.bintools.override {
bintools = llvmPackages_latest.tools.bintools.override {
bintools = bintools-unwrapped;
};
targetConfig = stdenv.targetPlatform.config;
inherit gcc;
cc = clangOmpss2Unwrapped;
gccVersion = with versions; let v = gcc.version; in concatStringsSep "." [(major v) (minor v) (patch v)];
in (wrapCCWith {
in wrapCCWith {
inherit cc bintools;
# extraPackages adds packages to depsTargetTargetPropagated
extraPackages = optional (omp != null) omp;
extraPackages = optional (openmp != null) openmp;
extraBuildCommands = ''
echo "-target ${targetConfig}" >> $out/nix-support/cc-cflags
echo "-B${gcc.cc}/lib/gcc/${targetConfig}/${gccVersion}" >> $out/nix-support/cc-cflags
@@ -73,15 +56,15 @@ in (wrapCCWith {
echo "--gcc-toolchain=${gcc}" >> $out/nix-support/cc-cflags
wrap ${targetConfig}clang++ $wrapper $ccPath/clang++
wrap ${targetConfig}clang $wrapper $ccPath/clang
wrap clang++ $wrapper $ccPath/clang++
'' + optionalString (omp != null) ''
'' + optionalString (openmp != null) ''
echo "export OPENMP_RUNTIME=${ompname}" >> $out/nix-support/cc-wrapper-hook
'' + optionalString (ompss2rt != null) ''
echo "export OMPSS2_RUNTIME=${rtname}" >> $out/nix-support/cc-wrapper-hook
echo "export ${homevar}=${ompss2rt}" >> $out/nix-support/cc-wrapper-hook
'' + optionalString (ompss2rt != null && ompss2rt.pname == "nodes") ''
echo "export NOSV_HOME=${ompss2rt}" >> $out/nix-support/cc-wrapper-hook
echo "export NOSV_HOME=${ompss2rt.nosv}" >> $out/nix-support/cc-wrapper-hook
'';
}).overrideAttrs (prev: { passthru = (prev.passthru or {}) // { inherit ompss2rt; }; })
}

View File

@@ -39,9 +39,7 @@ stdenv.mkDerivation rec {
perl
pkg-config
python3
];
buildInputs = lib.optionals enableNosv [
] ++ lib.optionals enableNosv [
nosv
] ++ lib.optionals enableOvni [
ovni
@@ -56,7 +54,6 @@ stdenv.mkDerivation rec {
dontStrip = enableDebug;
separateDebugInfo = true;
strictDeps = true;
cmakeFlags = [
"-DLIBOMP_OMPD_SUPPORT=OFF"
@@ -74,38 +71,8 @@ stdenv.mkDerivation rec {
rm -f $out/libllvmrt/libomp.*
'';
doInstallCheck = true;
# There are not cmake flags to force nOS-V, it enables it when found through
# pkg-config. If enableNosv is set, but we fail to find it at build time,
# the build will succeed but won't use nOS-V (libompv won't be created).
# This is a sanity check to ensure that after install we have the proper
# files.
installCheckPhase =
if enableNosv then
''
test -f $out/lib/libompv.so
test -f $out/libllvmrt/libompv.so
test ! -f $out/lib/libomp.so
test ! -f $out/libllvmrt/libomp.so
''
else
''
test -f $out/lib/libomp.so
test -f $out/libllvmrt/libomp.so
test ! -f $out/lib/libompv.so
test ! -f $out/libllvmrt/libompv.so
'';
passthru = {
inherit nosv;
};
meta = {
homepage = "https://gitlab.pm.bsc.es/llvm-ompss/llvm-mono";
description = "Support for the OpenMP language (with nOS-V)";
maintainers = with lib.maintainers.bsc; [ rpenacob ];
platforms = lib.platforms.linux;
license = [ lib.licenses.asl20 lib.licenses.llvm-exception ];
};
}

View File

@@ -22,12 +22,15 @@ stdenv.mkDerivation rec {
'';
buildInputs = [ libtirpc ];
patches = [ ./fix-install.patch ./gcc-14.patch ];
patches = [
./fix-install.patch
./gcc-14.patch
./fix-cross.patch
];
hardeningDisable = [ "all" ];
enableParallelBuilding = false;
strictDeps = true;
preBuild = ''
makeFlagsArray+=(
@@ -36,16 +39,15 @@ stdenv.mkDerivation rec {
CFLAGS=-Wno-implicit-int
CPPFLAGS=-I${libtirpc.dev}/include/tirpc
LDFLAGS=-ltirpc
CC=$CC
AR=$AR
CC=${stdenv.cc.targetPrefix}cc
AR=${stdenv.cc.targetPrefix}ar
)
'';
meta = {
description = "lmbench";
homepage = "https://github.com/intel/lmbench";
maintainers = with lib.maintainers.bsc; [ rarias ];
homepage = "http://www.bitmover.com/lmbench/";
maintainers = [ ];
platforms = lib.platforms.all;
license = lib.licenses.gpl2Plus;
};
}

View File

@@ -0,0 +1,13 @@
diff --git a/src/Makefile b/src/Makefile
index 2555014..356eeb3 100644
--- a/src/Makefile
+++ b/src/Makefile
@@ -36,7 +36,7 @@ SHELL=/bin/sh
CC=`../scripts/compiler`
MAKE=`../scripts/make`
-AR=ar
+AR?=ar
ARCREATE=cr
# base of installation location

View File

@@ -64,12 +64,11 @@ stdenv.mkDerivation rec {
# "--enable-bison-regeneration"
];
meta = {
broken = true;
meta = with lib; {
homepage = "https://github.com/bsc-pm/mcxx";
description = "C/C++/Fortran source-to-source compilation infrastructure aimed at fast prototyping";
maintainers = with lib.maintainers.bsc; [ rpenacob ];
platforms = lib.platforms.linux;
license = lib.licenses.gpl3Plus;
maintainers = with maintainers.bsc; [ rpenacob ];
platforms = platforms.linux;
license = licenses.gpl3Plus;
};
}

View File

@@ -59,11 +59,11 @@ stdenv.mkDerivation rec {
# "--enable-bison-regeneration"
];
meta = {
meta = with lib; {
homepage = "https://github.com/bsc-pm/mcxx";
description = "C/C++/Fortran source-to-source compilation infrastructure aimed at fast prototyping";
maintainers = with lib.maintainers.bsc; [ rpenacob ];
platforms = lib.platforms.linux;
license = lib.licenses.gpl3Plus;
maintainers = with maintainers.bsc; [ rpenacob ];
platforms = platforms.linux;
license = licenses.gpl3Plus;
};
}

View File

@@ -58,11 +58,11 @@ stdenv.mkDerivation rec {
# make generate_builtins_ia32 GXX_X86_BUILTINS=${gcc}/bin/g++
#'';
#
meta = {
meta = with lib; {
homepage = "https://github.com/bsc-pm/mcxx";
description = "C/C++/Fortran source-to-source compilation infrastructure aimed at fast prototyping";
maintainers = with lib.maintainers.bsc; [ rarias ];
platforms = lib.platforms.linux;
license = lib.licenses.gpl3Plus;
maintainers = with maintainers.bsc; [ rarias ];
platforms = platforms.linux;
license = licenses.gpl3Plus;
};
}

View File

@@ -1,15 +1,12 @@
{ python3Packages, lib }:
python3Packages.buildPythonApplication {
python3Packages.buildPythonApplication rec {
pname = "meteocat-exporter";
version = "1.0";
pyproject = true;
src = ./.;
doCheck = false;
strictDeps = true;
build-system = with python3Packages; [
setuptools

View File

@@ -6,13 +6,6 @@
, pmix
, gfortran
, symlinkJoin
# Disabled when cross-compiling
# To fix cross compilation, we should fill the values in:
# https://github.com/pmodels/mpich/blob/main/maint/fcrosscompile/cross_values.txt.in
# For each arch
, enableFortran ? stdenv.hostPlatform == stdenv.buildPlatform
, perl
, targetPackages
}:
let
@@ -22,13 +15,10 @@ let
paths = [ pmix.dev pmix.out ];
};
in mpich.overrideAttrs (old: {
buildInputs = old.buildInputs ++ [
buildInput = old.buildInputs ++ [
libfabric
pmixAll
];
nativeBuildInputs = old.nativeBuildInputs ++ [
perl
];
configureFlags = [
"--enable-shared"
"--enable-sharedlib"
@@ -41,22 +31,10 @@ in mpich.overrideAttrs (old: {
] ++ lib.optionals (lib.versionAtLeast gfortran.version "10") [
"FFLAGS=-fallow-argument-mismatch" # https://github.com/pmodels/mpich/issues/4300
"FCFLAGS=-fallow-argument-mismatch"
] ++ lib.optionals (!enableFortran) [
"--disable-fortran"
];
preFixup = ''
sed -i 's:^CC=.*:CC=${targetPackages.stdenv.cc}/bin/${targetPackages.stdenv.cc.targetPrefix}cc:' $out/bin/mpicc
sed -i 's:^CXX=.*:CXX=${targetPackages.stdenv.cc}/bin/${targetPackages.stdenv.cc.targetPrefix}c++:' $out/bin/mpicxx
'' + lib.optionalString enableFortran ''
sed -i 's:^FC=.*:FC=${targetPackages.gfortran or gfortran}/bin/${targetPackages.gfortran.targetPrefix or gfortran.targetPrefix}gfortran:' $out/bin/mpifort
'';
hardeningDisable = [ "all" ];
strictDeps = true;
meta = old.meta // {
maintainers = old.meta.maintainers ++ (with lib.maintainers.bsc; [ rarias ]);
cross = true;
};
})

View File

@@ -16,7 +16,7 @@
, jemallocNanos6 ? null
, cachelineBytes ? 64
, enableGlibcxxDebug ? false
, enablePapi ? true
, enablePapi ? stdenv.hostPlatform == stdenv.buildPlatform # Disabled when cross-compiling
, useGit ? false
, gitUrl ? "ssh://git@bscpm04.bsc.es/nanos6/nanos6"
, gitBranch ? "master"
@@ -78,10 +78,7 @@ in
] ++
(optional enableJemalloc "--with-jemalloc=${jemallocNanos6}") ++
(optional enableGlibcxxDebug "CXXFLAGS=-D_GLIBCXX_DEBUG") ++
# Most nanos6 api symbols are resolved at runtime, so prefer
# ifunc by default
(optional isCross "--with-symbol-resolution=ifunc") ++
(optional enablePapi "--with-papi=${papi}");
(optional isCross "--with-symbol-resolution=ifunc");
postConfigure = lib.optionalString (!enableDebug) ''
# Disable debug
@@ -96,14 +93,16 @@ in
dontStrip = enableDebug;
separateDebugInfo = true;
strictDeps = true;
nativeBuildInputs = [
autoconf
automake
libtool
pkg-config
];
# TODO: papi_version is needed for configure:
# ./configure: line 27378: papi_version: command not found
# This probably breaks cross-compilation
] ++ lib.optionals enablePapi [ papi ];
buildInputs = [
boost
@@ -118,12 +117,12 @@ in
echo "export NANOS6_HOME=$out" >> $out/nix-support/setup-hook
'';
meta = {
meta = with lib; {
homepage = "https://github.com/bsc-pm/nanos6";
description = "Nanos6 runtime for OmpSs-2" +
optionalString (enableDebug) " (with debug symbols)";
maintainers = with lib.maintainers.bsc; [ rarias ];
platforms = lib.platforms.linux;
license = lib.licenses.gpl3Plus;
maintainers = with maintainers.bsc; [ rarias ];
platforms = platforms.linux;
license = licenses.gpl3;
};
})

View File

@@ -8,6 +8,6 @@ jemalloc.overrideAttrs (old: {
hardeningDisable = [ "all" ];
meta = old.meta // {
description = old.meta.description + " (for Nanos6)";
maintainers = (old.meta.maintainers or []) ++ (with lib.maintainers.bsc; [ rarias ]);
maintainers = old.meta.maintainers // (with lib.maintainers.bsc; [ rarias ]);
};
})

View File

@@ -88,13 +88,12 @@ stdenv.mkDerivation rec {
cp ${nix_conf} $out/share/nix.conf
'';
meta = {
meta = with lib; {
homepage = null;
description = "nix bubblewrap wrapper";
maintainers = [ ];
broken = true;
platforms = lib.platforms.linux;
license = lib.licenses.mit;
maintainers = with maintainers.bsc; [ rarias ];
platforms = platforms.linux;
license = licenses.gpl3Plus; # TODO: license?
};
}

View File

@@ -1,23 +0,0 @@
{
stdenv
, lib
}:
stdenv.mkDerivation {
pname = "nixgen";
version = "0.0.1";
src = ./nixgen;
dontUnpack = true;
strictDeps = true;
phases = [ "installPhase" ];
installPhase = ''
mkdir -p $out/bin
cp -a $src $out/bin/nixgen
'';
meta = {
description = "Quickly generate flake.nix from command line";
maintainers = with lib.maintainers.bsc; [ rarias ];
platforms = lib.platforms.linux;
license = lib.licenses.gpl3Plus;
};
}

View File

@@ -1,97 +0,0 @@
#!/bin/sh
#
# Copyright (c) 2025, Barcelona Supercomputing Center (BSC)
# SPDX-License-Identifier: GPL-3.0+
# Author: Rodrigo Arias Mallo <rodrigo.arias@bsc.es>
function usage() {
echo "USAGE: nixgen [-f] [package [...]] [-b package [...]]" >&2
echo " Generates a flake.nix file with the given packages." >&2
echo " After flake.nix is created, use 'nix develop' to enter the shell." >&2
echo "OPTIONS" >&2
echo " -f Overwrite existing flake.nix (default: no)." >&2
echo " packages... Add these packages to the shell." >&2
echo " -b packages... Add the dependencies needed to build these packages." >&2
echo "EXAMPLE" >&2
echo " $ nixgen ovni bigotes -b nosv tampi" >&2
echo " Adds the packages ovni and bigotes as well as all required dependencies" >&2
echo " to build nosv and tampi." >&2
echo "AUTHOR" >&2
echo " Rodrigo Arias Mallo <rodrigo.arias@bsc.es>" >&2
exit 1
}
mode=package
packages=
inputsFrom=
force=
if [[ $# -eq 0 ]]; then
usage
fi
while [[ $# -gt 0 ]]; do
case $1 in -b)
mode=build
shift
;;
-f)
force=1
shift
;;
-h)
usage
;;
-*|--*)
echo "error: unknown option $1" >&2
exit 1
;;
*)
if [ "$mode" == "package" ]; then
packages+="${packages:+ }$1"
else
inputsFrom+="${inputsFrom:+ }$1"
fi
shift
;;
esac
done
if [ ! "$force" -a -e flake.nix ]; then
echo "error: flake.nix exists, force overwrite with -f" >&2
exit 1
fi
cat > flake.nix <<EOF
{
inputs.jungle.url = "git+https://jungle.bsc.es/git/rarias/jungle";
outputs = { self, jungle }:
let
nixpkgs = jungle.inputs.nixpkgs;
customOverlay = (final: prev: {
# Example overlay, for now empty
});
pkgs = import nixpkgs {
system = "x86_64-linux";
overlays = [
# Apply jungle overlay to get our BSC custom packages
jungle.outputs.bscOverlay
# And on top apply our local changes to customize for cluster
customOverlay
];
};
in {
devShells.x86_64-linux.default = pkgs.mkShell {
pname = "devshell";
# Include these packages in the shell
packages = with pkgs; [
$packages
];
# The dependencies needed to build these packages will be also included
inputsFrom = with pkgs; [
$inputsFrom
];
};
};
}
EOF

View File

@@ -16,12 +16,12 @@ stdenv.mkDerivation rec {
makeFlags = [ "DESTDIR=$(out)" ];
preBuild = "env";
dontPatchShebangs = true;
strictDeps = true;
meta = {
meta = with lib; {
homepage = "https://gitlab.pm.bsc.es/rarias/nixtools";
description = "nix bubblewrap wrapper";
maintainers = with lib.maintainers.bsc; [ rarias ];
platforms = lib.platforms.linux;
maintainers = with maintainers.bsc; [ rarias ];
platforms = platforms.linux;
license = licenses.gpl3Plus; # TODO: license?
};
}

View File

@@ -3,6 +3,7 @@
, lib
, fetchFromGitHub
, pkg-config
, perl
, numactl
, hwloc
, boost
@@ -10,23 +11,22 @@
, ovni
, nosv
, clangOmpss2
, which
, useGit ? false
, gitUrl ? "ssh://git@gitlab-internal.bsc.es/nos-v/nodes.git"
, gitBranch ? "master"
, gitCommit ? "511489e71504a44381e0930562e7ac80ac69a848" # version-1.4
, gitCommit ? "6002ec9ae6eb876d962cc34366952a3b26599ba6"
}:
with lib;
let
release = rec {
version = "1.4";
version = "1.3";
src = fetchFromGitHub {
owner = "bsc-pm";
repo = "nodes";
rev = "version-${version}";
hash = "sha256-+lR/R0l3fGZO3XG7whMorFW2y2YZ0ZFnLeOHyQYrAsQ=";
hash = "sha256-cFb9pxcjtkMmH0CsGgUO9LTdXDNh7MCqicgGWawLrsU=";
};
};
@@ -48,7 +48,6 @@ in
enableParallelBuilding = true;
dontStrip = true;
separateDebugInfo = true;
strictDeps = true;
configureFlags = [
"--with-nosv=${nosv}"
@@ -60,7 +59,6 @@ in
doCheck = false;
nativeCheckInputs = [
clangOmpss2
which
];
# The "bindnow" flags are incompatible with ifunc resolution mechanism. We
@@ -84,11 +82,11 @@ in
inherit nosv;
};
meta = {
meta = with lib; {
homepage = "https://gitlab.bsc.es/nos-v/nodes";
description = "Runtime library designed to work on top of the nOS-V runtime";
maintainers = with lib.maintainers.bsc; [ abonerib rarias ];
platforms = lib.platforms.linux;
license = lib.licenses.gpl3Plus;
maintainers = with maintainers.bsc; [ rarias ];
platforms = platforms.linux;
license = licenses.gpl3Plus;
};
}

View File

@@ -7,25 +7,25 @@
, numactl
, hwloc
, papi
, enablePapi ? true
, enablePapi ? stdenv.hostPlatform == stdenv.buildPlatform # Disabled when cross-compiling
, cacheline ? 64 # bits
, ovni ? null
, useGit ? false
, gitUrl ? "git@gitlab-internal.bsc.es:nos-v/nos-v.git"
, gitBranch ? "master"
, gitCommit ? "1108e4786b58e0feb9a16fa093010b763eb2f8e8" # version 4.0.0
, gitCommit ? "9f47063873c3aa9d6a47482a82c5000a8c813dd8"
}:
with lib;
let
release = rec {
version = "4.0.0";
version = "3.2.0";
src = fetchFromGitHub {
owner = "bsc-pm";
repo = "nos-v";
rev = "${version}";
hash = "sha256-llaq73bd/YxLVKNlMebnUHKa4z3sdcsuDUoVwUxNuw8=";
hash = "sha256-yaz92426EM8trdkBJlISmAoG9KJCDTvoAW/HKrasvOw=";
};
};
@@ -40,17 +40,16 @@ let
source = if (useGit) then git else release;
in
stdenv.mkDerivation {
stdenv.mkDerivation rec {
pname = "nosv";
inherit (source) src version;
hardeningDisable = [ "all" ];
dontStrip = true;
separateDebugInfo = true;
strictDeps = true;
configureFlags = [
"--with-ovni=${ovni}"
"CACHELINE_WIDTH=${toString cacheline}"
] ++ lib.optionals enablePapi [ "--with-papi=${papi}" ];
];
nativeBuildInputs = [
autoreconfHook
pkg-config
@@ -60,13 +59,12 @@ in
hwloc
ovni
] ++ lib.optionals enablePapi [ papi ];
patches = [ ./fix-papi.patch ];
meta = {
meta = with lib; {
homepage = "https://gitlab.bsc.es/nos-v/nos-v";
description = "Tasking library enables the co-execution of multiple applications with system-wide scheduling and a centralized management of resources";
maintainers = with lib.maintainers.bsc; [ abonerib rarias ];
platforms = lib.platforms.linux;
license = lib.licenses.gpl3Plus;
maintainers = with maintainers.bsc; [ abonerib ];
platforms = platforms.linux;
license = licenses.gpl3Plus;
};
}

View File

@@ -1,136 +0,0 @@
Commit ID: c09633f172ce4075e0a05a33f6dcbe8e03e1202a
Change ID: onmwypnnrysktutwsvotqovzponvwrxs
Bookmarks: fix/papi fix/papi@git fix/papi@origin
Author : Aleix Boné <aleix.boneribo@bsc.es> (2025-12-10 11:14:14)
Committer: Aleix Boné <aleix.boneribo@bsc.es> (2025-12-12 12:56:48)
Improve PAPI m4 module for cross compilation
diff --git a/m4/papi.m4 b/m4/papi.m4
index de90584870..8398f856f5 100644
--- a/m4/papi.m4
+++ b/m4/papi.m4
@@ -1,6 +1,6 @@
# This file is part of Nanos6 and is licensed under the terms contained in the COPYING file.
#
-# Copyright (C) 2021-2022 Barcelona Supercomputing Center (BSC)
+# Copyright (C) 2021-2025 Barcelona Supercomputing Center (BSC)
AC_DEFUN([AC_CHECK_PAPI],
[
@@ -8,34 +8,38 @@
[papi],
[AS_HELP_STRING([--with-papi=prefix], [specify the installation prefix of PAPI])],
[ ac_cv_use_papi_prefix=$withval ],
- [ ac_cv_use_papi_prefix="" ]
+ [ ac_cv_use_papi_prefix="check" ]
)
if test x"${ac_cv_use_papi_prefix}" = x"no"; then
AC_MSG_CHECKING([the PAPI installation prefix])
AC_MSG_RESULT([${ac_cv_use_papi_prefix}])
ac_use_papi=no
- elif test x"${ac_cv_use_papi_prefix}" != x"" ; then
- AC_MSG_CHECKING([the PAPI installation prefix])
- AC_MSG_RESULT([${ac_cv_use_papi_prefix}])
- papi_LIBS="-L${ac_cv_use_papi_prefix}/lib -lpapi -Wl,-rpath,${ac_cv_use_papi_prefix}/lib"
- papi_CFLAGS="-I$ac_cv_use_papi_prefix/include"
- ac_use_papi=yes
- else
+ elif test x"${ac_cv_use_papi_prefix}" = x""; then
+ AC_MSG_RESULT([invalid prefix])
+ AC_MSG_ERROR([papi prefix specified but empty])
+ elif test x"${ac_cv_use_papi_prefix}" = x"yes" -o x"${ac_cv_use_papi_prefix}" = x"check"; then
PKG_CHECK_MODULES(
[papi],
- [papi],
+ [papi >= 5.6.0],
[
AC_MSG_CHECKING([the PAPI installation prefix])
AC_MSG_RESULT([retrieved from pkg-config])
papi_CFLAGS="${papi_CFLAGS}"
ac_use_papi=yes
+ ac_papi_version_correct=yes
], [
AC_MSG_CHECKING([the PAPI installation prefix])
AC_MSG_RESULT([not available])
ac_use_papi=no
]
)
+ else
+ AC_MSG_CHECKING([the PAPI installation prefix])
+ AC_MSG_RESULT([${ac_cv_use_papi_prefix}])
+ papi_LIBS="-L${ac_cv_use_papi_prefix}/lib -lpapi -Wl,-rpath,${ac_cv_use_papi_prefix}/lib"
+ papi_CFLAGS="-I$ac_cv_use_papi_prefix/include"
+ ac_use_papi=yes
fi
if test x"${ac_use_papi}" = x"yes" ; then
@@ -53,10 +57,10 @@
ac_use_papi=yes
],
[
- if test x"${ac_cv_use_papi_prefix}" != x"" ; then
- AC_MSG_ERROR([PAPI cannot be found.])
+ if test x"${ac_cv_use_papi_prefix}" = x"yes" ; then
+ AC_MSG_ERROR([PAPI >= 5.6.0 cannot be found.])
else
- AC_MSG_WARN([PAPI cannot be found.])
+ AC_MSG_WARN([PAPI >= 5.6.0 not available.])
fi
ac_use_papi=no
]
@@ -64,30 +68,38 @@
CFLAGS="${ac_save_CFLAGS}"
LIBS="${ac_save_LIBS}"
+ elif test x"${ac_cv_use_papi_prefix}" = x"yes" ; then
+ AC_MSG_ERROR([PAPI >= 5.6.0 cannot be found.])
fi
- if test x"${ac_use_papi}" = x"yes" ; then
- if test x"${ac_cv_use_papi_prefix}" != x"" ; then
+ if test x"${ac_use_papi}" = x"yes" -a x"${ac_papi_version_correct}" != x"yes" ; then
+ if test x"${ac_cv_use_papi_prefix}" != x"yes" -a x"${ac_cv_use_papi_prefix}" != x"check" ; then
papiBinary=${ac_cv_use_papi_prefix}/bin/papi_version
else
papiBinary=papi_version
fi
- papiVersion=`$papiBinary | sed 's/[[^0-9.]]*\([[0-9.]]*\).*/\1/'`
- AX_COMPARE_VERSION(
- [[${papiVersion}]],
- [[ge]],
- [[5.6.0]],
- [[ac_papi_version_correct=yes]],
- [[ac_papi_version_correct=no]]
- )
- if test x"${ac_papi_version_correct}" != x"yes" ; then
- AC_MSG_ERROR([PAPI version must be >= 5.6.0.])
- ac_use_papi=no
+ if test x"$cross_compiling" = x"yes" ; then
+ AC_MSG_WARN([Cross-compiling detected, skipping PAPI version check])
else
- AC_MSG_CHECKING([if the PAPI version >= 5.6.0.])
- AC_MSG_RESULT([${ac_papi_version_correct}])
+ papiVersion=`$papiBinary | sed 's/[[^0-9.]]*\([[0-9.]]*\).*/\1/'`
+
+ AX_COMPARE_VERSION(
+ [[${papiVersion}]],
+ [[ge]],
+ [[5.6.0]],
+ [[ac_papi_version_correct=yes]],
+ [[ac_papi_version_correct=no]]
+ )
+
+ if test x"${ac_papi_version_correct}" != x"yes" ; then
+ AC_MSG_ERROR([PAPI version must be >= 5.6.0.])
+ ac_use_papi=no
+ else
+ AC_MSG_CHECKING([if the PAPI version >= 5.6.0.])
+ AC_MSG_RESULT([${ac_papi_version_correct}])
+ fi
fi
fi

View File

@@ -24,7 +24,6 @@ stdenv.mkDerivation rec {
doCheck = true;
enableParallelBuilding = true;
strictDeps = true;
nativeBuildInputs = [ mpiAll ];
buildInputs = [ mpiAll ];
hardeningDisable = [ "all" ];
@@ -33,11 +32,6 @@ stdenv.mkDerivation rec {
"CXX=mpicxx"
];
env = {
MPICH_CC="${stdenv.cc}/bin/${stdenv.cc.targetPrefix}cc";
MPICH_CXX="${stdenv.cc}/bin/${stdenv.cc.targetPrefix}c++";
};
postInstall = ''
mkdir -p $out/bin
for f in $(find $out -executable -type f); do
@@ -50,6 +44,5 @@ stdenv.mkDerivation rec {
homepage = "http://mvapich.cse.ohio-state.edu/benchmarks/";
maintainers = [ ];
platforms = lib.platforms.all;
cross = true;
};
}

View File

@@ -7,7 +7,7 @@
, useGit ? false
, gitBranch ? "master"
, gitUrl ? "ssh://git@bscpm04.bsc.es/rarias/ovni.git"
, gitCommit ? "06432668f346c8bdc1006fabc23e94ccb81b0d8b" # version 1.13.0
, gitCommit ? "e4f62382076f0cf0b1d08175cf57cc0bc51abc61"
, enableDebug ? false
# Only enable MPI if the build is native (fails on cross-compilation)
, useMpi ? (stdenv.buildPlatform.canExecute stdenv.hostPlatform)
@@ -15,13 +15,13 @@
let
release = rec {
version = "1.13.0";
version = "1.12.0";
src = fetchFromGitHub {
owner = "bsc-pm";
repo = "ovni";
rev = "${version}";
hash = "sha256-0l2ryIyWNiZqeYdVlnj/WnQGS3xFCY4ICG8JedX424w=";
} // { shortRev = "0643266"; };
hash = "sha256-H04JvsVKrdqr3ON7JhU0g17jjlg/jzQ7eTfx9vUNd3E=";
} // { shortRev = "a73afcf"; };
};
git = rec {
@@ -40,7 +40,6 @@ in
inherit (source) src version;
dontStrip = true;
separateDebugInfo = true;
strictDeps = true;
postPatch = ''
patchShebangs --build test/
'';
@@ -57,12 +56,11 @@ in
checkTarget = "test";
hardeningDisable = [ "all" ];
meta = {
meta = with lib; {
homepage = "https://ovni.readthedocs.io";
description = "Obtuse but Versatile Nanoscale Instrumentation";
maintainers = with lib.maintainers.bsc; [ rarias ];
platforms = lib.platforms.linux;
license = lib.licenses.gpl3Plus;
cross = true;
maintainers = with maintainers.bsc; [ rarias ];
platforms = platforms.linux;
license = licenses.gpl3Plus;
};
}

View File

@@ -1,22 +0,0 @@
{
stdenv,
papi,
}:
if stdenv.hostPlatform == stdenv.buildPlatform then
papi
else
papi.overrideAttrs (old: {
configureFlags = (old.configureFlags or [ ]) ++ [
"--enable-perf_event_uncore=no"
"--with-sysdetect=no"
"--with-ffsll"
"--with-tls=__thread"
"--with-virtualtimer=clock_thread_cputime_id"
"--with-walltimer=clock_realtime"
"--with-perf-events"
"--with-CPU=${stdenv.hostPlatform.uname.processor}"
"--with-arch=${stdenv.hostPlatform.uname.processor}"
];
patches = (old.patches or [ ]) ++ [ ./fix-ar-cross.patch ];
})

View File

@@ -1,19 +0,0 @@
diff --git a/sde_lib/Makefile b/sde_lib/Makefile
index 8518f92..90a9953 100644
--- a/sde_lib/Makefile
+++ b/sde_lib/Makefile
@@ -1,4 +1,5 @@
CC ?= gcc
+AR ?= ar
SDE_INC = -I. -I..
SDE_LD = -ldl -pthread
CFLAGS += -Wextra -Wall -O2
@@ -18,7 +19,7 @@ dynamic: $(DOBJS)
rm -f *_d.o
static: $(SOBJS)
- ar rs libsde.a $(SOBJS)
+ $(AR) rs libsde.a $(SOBJS)
rm -f *_s.o
clean:

View File

@@ -12,7 +12,7 @@
, paraverKernel
, openssl
, glibcLocales
, wrapGAppsHook3
, wrapGAppsHook
}:
let
@@ -47,7 +47,6 @@ stdenv.mkDerivation rec {
dontStrip = true;
enableParallelBuilding = true;
strictDeps = true;
preConfigure = ''
export CFLAGS="-O3"
@@ -65,7 +64,7 @@ stdenv.mkDerivation rec {
autoconf
automake
autoreconfHook
wrapGAppsHook3
wrapGAppsHook
];
buildInputs = [
@@ -91,17 +90,11 @@ stdenv.mkDerivation rec {
mv $out/share/doc/wxparaver_help_contents/man $out/share/man/man1
'';
meta = {
homepage = "https://tools.bsc.es/paraver";
downloadPage = "https://github.com/bsc-performance-tools/wxparaver";
description = "Performance analyzer based on event traces";
longDescription = ''
Trace-based visualization and analysis tool designed to study quantitative
detailed metrics and obtain qualitative knowledge of the performance of
applications, libraries, processors and whole architectures
'';
maintainers = with lib.maintainers.bsc; [ rarias ];
platforms = lib.platforms.linux;
license = lib.licenses.lgpl21Plus;
meta = with lib; {
homepage = "https://github.com/bsc-performance-tools/wxparaver";
description = "Trace-based visualization and analysis tool designed to study quantitative detailed metrics and obtain qualitative knowledge of the performance of applications, libraries, processors and whole architectures";
maintainers = with maintainers.bsc; [ rarias ];
platforms = platforms.linux;
license = licenses.lgpl21Plus;
};
}

View File

@@ -1,6 +1,5 @@
{
stdenv
, lib
, fetchFromGitHub
, autoreconfHook
, boost
@@ -34,7 +33,6 @@ stdenv.mkDerivation rec {
enableParallelBuilding = true;
dontStrip = true;
strictDeps = true;
preConfigure = ''
export CFLAGS="-O3 -DPARALLEL_ENABLED"
@@ -59,13 +57,4 @@ stdenv.mkDerivation rec {
xml2
zlib
];
meta = {
homepage = "https://tools.bsc.es/paraver";
downloadPage = "https://github.com/bsc-performance-tools/paraver-kernel";
description = "Kernel library used by wxparaver";
maintainers = with lib.maintainers.bsc; [ rarias ];
platforms = lib.platforms.linux;
license = lib.licenses.lgpl21Plus;
};
}

View File

@@ -13,7 +13,6 @@ buildGoModule rec {
vendorHash = "sha256-A1dd9T9SIEHDCiVT2UwV6T02BSLh9ej6LC/2l54hgwI=";
doCheck = false;
strictDeps = true;
meta = with lib; {
description = "Prometheus SLURM Exporter";

View File

@@ -18,7 +18,6 @@ stdenv.mkDerivation rec {
};
hardeningDisable = [ "all" ];
dontStrip = true;
strictDeps = true;
configureFlags = [ "--with-ovni=${ovni}" ];
nativeBuildInputs = [
@@ -30,12 +29,11 @@ stdenv.mkDerivation rec {
mpi
];
meta = {
meta = with lib; {
homepage = "https://github.com/bsc-pm/sonar";
description = "Set of runtime libraries which instrument parallel programming models through the ovni instrumentation library";
maintainers = with lib.maintainers.bsc; [ rarias ];
platforms = lib.platforms.linux;
license = lib.licenses.mit;
cross = true;
maintainers = with maintainers.bsc; [ rarias ];
platforms = platforms.linux;
license = licenses.mit;
};
}

View File

@@ -5,19 +5,27 @@
, automake
, autoconf
, libtool
, mpi
, autoreconfHook
, gpi-2
, boost
, numactl
, rdma-core
, gfortran
, symlinkJoin
}:
let
mpiAll = symlinkJoin {
name = "mpi-all";
paths = [ mpi.all ];
};
in
stdenv.mkDerivation rec {
pname = "tagaspi";
enableParallelBuilding = true;
separateDebugInfo = true;
strictDeps = true;
version = "2.0";
src = fetchFromGitHub {
@@ -27,18 +35,16 @@ stdenv.mkDerivation rec {
hash = "sha256-RGG/Re2uM293HduZfGzKUWioDtwnSYYdfeG9pVrX9EM=";
};
nativeBuildInputs = [
buildInputs = [
autoreconfHook
automake
autoconf
libtool
gfortran
];
buildInputs = [
boost
numactl
rdma-core
gfortran
mpiAll
];
dontDisableStatic = true;
@@ -51,12 +57,11 @@ stdenv.mkDerivation rec {
hardeningDisable = [ "all" ];
meta = {
meta = with lib; {
homepage = "https://github.com/bsc-pm/tagaspi";
description = "Task-Aware GASPI";
maintainers = with lib.maintainers.bsc; [ rarias ];
platforms = lib.platforms.linux;
license = lib.licenses.gpl3Plus;
cross = false; # gpi-2 cannot cross
maintainers = with maintainers.bsc; [ rarias ];
platforms = platforms.linux;
license = licenses.gpl3Plus;
};
}

View File

@@ -45,7 +45,6 @@ in stdenv.mkDerivation {
inherit (source) src version;
enableParallelBuilding = true;
separateDebugInfo = true;
strictDeps = true;
nativeBuildInputs = [
autoconf
@@ -63,12 +62,11 @@ in stdenv.mkDerivation {
dontDisableStatic = true;
hardeningDisable = [ "all" ];
meta = {
meta = with lib; {
homepage = "https://github.com/bsc-pm/tampi";
description = "Task-Aware MPI";
maintainers = with lib.maintainers.bsc; [ rarias ];
platforms = lib.platforms.linux;
license = lib.licenses.gpl3Plus;
cross = true;
maintainers = with maintainers.bsc; [ rarias ];
platforms = platforms.linux;
license = licenses.gpl3Plus;
};
}

View File

@@ -1,15 +1,12 @@
{ python3Packages, lib }:
python3Packages.buildPythonApplication {
python3Packages.buildPythonApplication rec {
pname = "upc-qaire-exporter";
version = "1.0";
pyproject = true;
src = ./.;
doCheck = false;
strictDeps = true;
build-system = with python3Packages; [
setuptools

View File

@@ -6,7 +6,6 @@
stdenv.mkDerivation {
name = "hwloc-test";
requiredSystemFeatures = [ "sys-devices" ];
src = ./.;
@@ -15,7 +14,7 @@ stdenv.mkDerivation {
buildPhase = ''
ls -l /sys
gcc -lhwloc hwloc.c -o hwloc
strace ./hwloc > $out
strace ./hwloc
'';
}

View File

@@ -23,6 +23,10 @@ in stdenv.mkDerivation {
dontUnpack = true;
dontConfigure = true;
# nOS-V requires access to /sys/devices to request NUMA information. It will
# fail to run otherwise, so we disable the sandbox for this test.
__noChroot = true;
buildInputs = [ openmp ];
buildPhase = ''

View File

@@ -36,8 +36,9 @@ in stdenv.mkDerivation {
dontUnpack = true;
dontConfigure = true;
# nOS-V requires access to /sys/devices to request NUMA information
requiredSystemFeatures = [ "sys-devices" ];
# nOS-V requires access to /sys/devices to request NUMA information. It will
# fail to run otherwise, so we disable the sandbox for this test.
__noChroot = true;
buildInputs = [ nosv ];

View File

@@ -24,8 +24,9 @@ in stdenv.mkDerivation {
dontUnpack = true;
dontConfigure = true;
# nOS-V requires access to /sys/devices to request NUMA information
requiredSystemFeatures = [ "sys-devices" ];
# nOS-V requires access to /sys/devices to request NUMA information. It will
# fail to run otherwise, so we disable the sandbox for this test.
__noChroot = true;
buildPhase = ''
set -x

View File

@@ -25,10 +25,9 @@ stdenv.mkDerivation rec {
hardeningDisable = [ "all" ];
#NIX_DEBUG = 1;
buildInputs = [ ]; #strace gdb;
# NODES requires access to /sys/devices to request NUMA information
requiredSystemFeatures = [ "sys-devices" ];
# NODES requires access to /sys/devices to request NUMA information. It will
# fail to run otherwise, so we disable the sandbox for this test.
__noChroot = true;
buildPhase = ''
set -x
#$CC -v