Add fetchGitMirror function

Reviewed-by: Rodrigo Arias Mallo <rodrigo.arias@bsc.es>

m/common/base/env.nix

@@ -5,8 +5,8 @@
     vim wget git htop tmux pciutils tcpdump ripgrep nix-index nixos-option
     nix-diff ipmitool freeipmi ethtool lm_sensors cmake gnumake file tree
     ncdu config.boot.kernelPackages.perf ldns pv
-    # From bsckgs overlay
-    osumb
+    # From jungle overlay
+    osumb nixgen
   ];
 
   programs.direnv.enable = true;

m/fox/configuration.nix

@@ -93,20 +93,4 @@
     wantedBy = [ "multi-user.target" ];
     serviceConfig.ExecStart = script;
   };
-
-  # Only allow SSH connections from users who have a SLURM allocation
-  # See: https://slurm.schedmd.com/pam_slurm_adopt.html
-  security.pam.services.sshd.rules.account.slurm = {
-    control = "required";
-    enable = true;
-    modulePath = "${pkgs.slurm}/lib/security/pam_slurm_adopt.so";
-    args = [ "log_level=debug5" ];
-    order = 999999; # Make it last one
-  };
-
-  # Disable systemd session (pam_systemd.so) as it will conflict with the
-  # pam_slurm_adopt.so module. What happens is that the shell is first adopted
-  # into the slurmstepd task and then into the systemd session, which is not
-  # what we want, otherwise it will linger even if all jobs are gone.
-  security.pam.services.sshd.startSession = lib.mkForce false;
 }

m/module/slurm-client.nix

@@ -1,4 +1,4 @@
-{ lib, ... }:
+{ lib, pkgs, ... }:
 
 {
   imports = [
@@ -21,4 +21,20 @@
   };
 
   services.slurm.client.enable = true;
+
+  # Only allow SSH connections from users who have a SLURM allocation
+  # See: https://slurm.schedmd.com/pam_slurm_adopt.html
+  security.pam.services.sshd.rules.account.slurm = {
+    control = "required";
+    enable = true;
+    modulePath = "${pkgs.slurm}/lib/security/pam_slurm_adopt.so";
+    args = [ "log_level=debug5" ];
+    order = 999999; # Make it last one
+  };
+
+  # Disable systemd session (pam_systemd.so) as it will conflict with the
+  # pam_slurm_adopt.so module. What happens is that the shell is first adopted
+  # into the slurmstepd task and then into the systemd session, which is not
+  # what we want, otherwise it will linger even if all jobs are gone.
+  security.pam.services.sshd.startSession = lib.mkForce false;
 }

m/module/slurm-common.nix

@@ -1,31 +1,6 @@
 { config, pkgs, ... }:
 
-let
-  suspendProgram = pkgs.writeShellScript "suspend.sh" ''
-    exec 1>>/var/log/power_save.log 2>>/var/log/power_save.log
-    set -x
-    export "PATH=/run/current-system/sw/bin:$PATH"
-    echo "$(date) Suspend invoked $0 $*" >> /var/log/power_save.log
-    hosts=$(scontrol show hostnames $1)
-    for host in $hosts; do
-      echo Shutting down host: $host
-      ipmitool -I lanplus -H ''${host}-ipmi -P "" -U "" chassis power off
-    done
-  '';
-
-  resumeProgram = pkgs.writeShellScript "resume.sh" ''
-    exec 1>>/var/log/power_save.log 2>>/var/log/power_save.log
-    set -x
-    export "PATH=/run/current-system/sw/bin:$PATH"
-    echo "$(date) Suspend invoked $0 $*" >> /var/log/power_save.log
-    hosts=$(scontrol show hostnames $1)
-    for host in $hosts; do
-      echo Starting host: $host
-      ipmitool -I lanplus -H ''${host}-ipmi -P "" -U "" chassis power on
-    done
-  '';
-
-in {
+{
   services.slurm = {
     controlMachine = "apex";
     clusterName = "jungle";
@@ -59,16 +34,6 @@ in {
       # the resources. Use the task/cgroup plugin to enable process containment.
       TaskPlugin=task/affinity,task/cgroup
 
-      # Power off unused nodes until they are requested
-      SuspendProgram=${suspendProgram}
-      SuspendTimeout=60
-      ResumeProgram=${resumeProgram}
-      ResumeTimeout=300
-      SuspendExcNodes=fox
-
-      # Turn the nodes off after 1 hour of inactivity
-      SuspendTime=3600
-
       # Reduce port range so we can allow only this range in the firewall
       SrunPortRange=60000-61000
 

overlay.nix

@@ -1,9 +1,8 @@
 final: /* Future last stage */
 prev:  /* Previous stage */
 
-with final.lib;
-
 let
+  lib = prev.lib;
   callPackage = final.callPackage;
 
   bscPkgs = {
@@ -36,7 +35,9 @@ let
     mpich = callPackage ./pkgs/mpich/default.nix { mpich = prev.mpich; };
     nanos6 = callPackage ./pkgs/nanos6/default.nix { };
     nanos6Debug = final.nanos6.override { enableDebug = true; };
+    nix = callPackage ./pkgs/nix/default.nix { nix = prev.nix; };
     nixtools = callPackage ./pkgs/nixtools/default.nix { };
+    nixgen = callPackage ./pkgs/nixgen/default.nix { };
     # Broken because of pkgsStatic.libcap
     # See: https://github.com/NixOS/nixpkgs/pull/268791
     #nix-wrap = callPackage ./pkgs/nix-wrap/default.nix { };
@@ -96,18 +97,23 @@ let
     };
   };
 
+  # Load our custom lib functions with import, callPackage fails.
+  lib' = import ./pkgs/lib.nix { lib = prev.lib; };
+
   # For now, only build toplevel packages in CI/Hydra
-  pkgsTopLevel = filterAttrs (_: isDerivation) bscPkgs;
+  pkgsTopLevel = lib.filterAttrs (_: lib.isDerivation) bscPkgs;
 
   # Native build in that platform doesn't imply cross build works
-  canCrossCompile = platform: pkg:
+  canCrossCompile = platform: default: pkg:
     (isDerivation pkg) &&
-    # Must be defined explicitly
-    (pkg.meta.cross or false) &&
-    (meta.availableOn platform pkg);
+    # If meta.cross is undefined, use default
+    (pkg.meta.cross or default) &&
+    (meta.availableOn final.pkgsCross.${platform}.stdenv.hostPlatform pkg);
 
   # For now only RISC-V
-  crossSet = { riscv64 = final.pkgsCross.riscv64.bsc.pkgsTopLevel; };
+  crossSet = genAttrs [ "riscv64" ] (platform:
+    filterAttrs (_: canCrossCompile platform true)
+      final.pkgsCross.${platform}.bsc.pkgsTopLevel);
 
   buildList = name: paths:
     final.runCommandLocal name { } ''
@@ -122,21 +128,17 @@ let
     '';
 
   pkgsList = buildList "ci-pkgs" (builtins.attrValues pkgsTopLevel);
-  testsList = buildList "ci-tests" (collect isDerivation tests);
+  testsList = buildList "ci-tests" (lib.collect lib.isDerivation tests);
   allList = buildList' "ci-all" [ pkgsList testsList ];
   # For now only RISC-V
   crossList = buildList "ci-cross"
     (filter
-      (canCrossCompile final.pkgsCross.riscv64.stdenv.hostPlatform)
+      (canCrossCompile "riscv64" false) # opt-in (pkgs with: meta.cross = true)
         (builtins.attrValues crossSet.riscv64));
 
 in bscPkgs // {
 
-  lib = prev.lib // {
-    maintainers = prev.lib.maintainers // {
-      bsc = import ./pkgs/maintainers.nix;
-    };
-  };
+  lib = lib';
 
   # Prevent accidental usage of bsc-ci attribute
   bsc-ci = throw "the bsc-ci attribute is deprecated, use bsc.ci";

pkgs/amd-uprof/default.nix

@@ -90,7 +90,7 @@ in
     meta = {
       description = "Performance analysis tool-suite for x86 based applications";
       homepage = "https://www.amd.com/es/developer/uprof.html";
-      platforms = lib.platforms.linux;
+      platforms = [ "x86_64-linux" ];
       license = lib.licenses.unfree;
       maintainers = with lib.maintainers.bsc; [ rarias varcila ];
     };

pkgs/bench6/default.nix

@@ -14,16 +14,19 @@
 , openblas
 , ovni
 , gitBranch ? "master"
-, gitURL ? "ssh://git@bscpm04.bsc.es/rarias/bench6.git"
 , gitCommit ? "bf29a53113737c3aa74d2fe3d55f59868faea7b4"
+, gitUrls ? [
+  "ssh://git@bscpm04.bsc.es/rarias/bench6.git"
+  "https://github.com/rodarima/bench6.git"
+]
 }:
 
 stdenv.mkDerivation rec {
   pname = "bench6";
   version = "${src.shortRev}";
 
-  src = builtins.fetchGit {
-    url = gitURL;
+  src = lib.fetchGitMirror {
+    urls = gitUrls;
     ref = gitBranch;
     rev = gitCommit;
   };

pkgs/cudainfo/default.nix

@@ -1,5 +1,6 @@
 {
   stdenv
+, lib
 , cudatoolkit
 , cudaPackages
 , autoAddDriverRunpath
@@ -40,4 +41,9 @@ stdenv.mkDerivation (finalAttrs: {
     '';
     installPhase = "touch $out";
   };
+
+  meta = {
+    platforms = [ "x86_64-linux" ];
+    maintainers = with lib.maintainers.bsc; [ rarias ];
+  };
 })

pkgs/gpi-2/default.nix

@@ -9,7 +9,6 @@
 , automake
 , libtool
 , mpi
-, rsync
 , gfortran
 }:
 
@@ -44,13 +43,24 @@ stdenv.mkDerivation rec {
 
   configureFlags = [
     "--with-infiniband=${rdma-core-all}"
-    "--with-mpi=${mpiAll}"
+    "--with-mpi=yes" # fixes mpi detection when cross-compiling
     "--with-slurm"
     "CFLAGS=-fPIC"
     "CXXFLAGS=-fPIC"
   ];
 
-  buildInputs = [ slurm mpiAll rdma-core-all autoconf automake libtool rsync gfortran ];
+  nativeBuildInputs = [
+    autoconf
+    automake
+    gfortran
+    libtool
+  ];
+
+  buildInputs = [
+    slurm
+    mpiAll
+    rdma-core-all
+  ];
 
   hardeningDisable = [ "all" ];
 
@@ -60,5 +70,6 @@ stdenv.mkDerivation rec {
     maintainers = with lib.maintainers.bsc; [ rarias ];
     platforms = lib.platforms.linux;
     license = lib.licenses.gpl3Plus;
+    cross = false; # infiniband detection does not work
   };
 }

pkgs/lib.nix

@@ -0,0 +1,30 @@
+{ lib }:
+
+let
+  # If not supported, fall back to tryEval, which will fail in the first case.
+  safeCatchAll = if (builtins ? catchAll)
+    then builtins.catchAll
+    else e: (builtins.tryEval e) // { msg = ""; };
+in lib.extend (_: lib: {
+  # Same as fetchGit but accepts a list of mirror urls
+  fetchGitMirror = { urls, ... } @ args:
+  let
+    cleanArgs = lib.removeAttrs args [ "urls" ];
+    fetchUrl = url: builtins.fetchGit (cleanArgs // { inherit url; });
+    safeFetch = url: safeCatchAll (fetchUrl url);
+    complain = url:
+    let
+      r = safeFetch url;
+    in
+      if (r.success) then r
+      else lib.warn "cannot fetch ${url}, trying next
+      mirror:${builtins.replaceStrings ["\n" ] ["\n> "] ("\n"+r.msg)}" r;
+    fetchList = lib.map (url: complain url) urls;
+    bad = throw "cannot fetch from any mirror";
+    good = lib.findFirst (e: e.success) bad fetchList;
+  in good.value;
+
+  maintainers = lib.maintainers // {
+    bsc = import ./maintainers.nix;
+  };
+})

pkgs/llvm-ompss2/clang.nix

@@ -16,19 +16,19 @@
 , useGit ? false
 , gitUrl ? "ssh://git@bscpm04.bsc.es/llvm-ompss/llvm-mono.git"
 , gitBranch ? "master"
-, gitCommit ? "880e2341c56bad1dc14e8c369fb3356bec19018e"
+, gitCommit ? "872ba63f86edaefc9787984ef3fae9f2f94e0124" # github-release-2025.11
 }:
 
 let
   stdenv = llvmPackages_latest.stdenv;
 
   release = rec {
-    version = "2025.06";
+    version = "2025.11";
     src = fetchFromGitHub {
       owner = "bsc-pm";
       repo = "llvm";
       rev = "refs/tags/github-release-${version}";
-      hash = "sha256-ww9PpRmtz/M9IyLiZ8rAehx2UW4VpQt+svf4XfKBzKo=";
+      hash = "sha256-UgwMTUkM9Z87dDH205swZFBeFhrcbLAxginViG40pBM=";
     };
   };
 

pkgs/mpich/default.nix

@@ -6,6 +6,13 @@
 , pmix
 , gfortran
 , symlinkJoin
+# Disabled when cross-compiling
+# To fix cross compilation, we should fill the values in:
+# https://github.com/pmodels/mpich/blob/main/maint/fcrosscompile/cross_values.txt.in
+# For each arch
+, enableFortran ? stdenv.hostPlatform == stdenv.buildPlatform
+, perl
+, targetPackages
 }:
 
 let
@@ -15,10 +22,13 @@ let
     paths = [ pmix.dev pmix.out ];
   };
 in mpich.overrideAttrs (old: {
-  buildInput = old.buildInputs ++ [
+  buildInputs = old.buildInputs ++ [
     libfabric
     pmixAll
   ];
+  nativeBuildInputs = old.nativeBuildInputs ++ [
+    perl
+  ];
   configureFlags = [
     "--enable-shared"
     "--enable-sharedlib"
@@ -31,10 +41,21 @@ in mpich.overrideAttrs (old: {
   ] ++ lib.optionals (lib.versionAtLeast gfortran.version "10") [
     "FFLAGS=-fallow-argument-mismatch" # https://github.com/pmodels/mpich/issues/4300
     "FCFLAGS=-fallow-argument-mismatch"
+  ] ++ lib.optionals (!enableFortran) [
+    "--disable-fortran"
   ];
+
+  preFixup = ''
+    sed -i 's:^CC=.*:CC=${targetPackages.stdenv.cc}/bin/${targetPackages.stdenv.cc.targetPrefix}cc:' $out/bin/mpicc
+    sed -i 's:^CXX=.*:CXX=${targetPackages.stdenv.cc}/bin/${targetPackages.stdenv.cc.targetPrefix}c++:' $out/bin/mpicxx
+  '' + lib.optionalString enableFortran ''
+    sed -i 's:^FC=.*:FC=${targetPackages.gfortran or gfortran}/bin/${targetPackages.gfortran.targetPrefix or gfortran.targetPrefix}gfortran:' $out/bin/mpifort
+  '';
+
   hardeningDisable = [ "all" ];
 
   meta = old.meta // {
     maintainers = old.meta.maintainers ++ (with lib.maintainers.bsc; [ rarias ]);
+    cross = true;
   };
 })

pkgs/nix/add-catchAll.patch

@@ -0,0 +1,64 @@
+From 3aa73c21e3afc91522a6121b0d591af6925b4ba6 Mon Sep 17 00:00:00 2001
+From: Rodrigo Arias Mallo <rodarima@gmail.com>
+Date: Mon, 13 Oct 2025 16:05:30 +0200
+Subject: [PATCH] Add builtins.catchAll to catch all types of errors
+
+Allows fetching multiple Git repositories with builtin.fetchGit and
+catching any errors thrown by the builtin, in opposition to the builtin
+tryEval.
+---
+ src/libexpr/primops.cc | 38 ++++++++++++++++++++++++++++++++++++++
+ 1 file changed, 38 insertions(+)
+
+diff --git a/src/libexpr/primops.cc b/src/libexpr/primops.cc
+index 36a67a39d..3b26f9f43 100644
+--- a/src/libexpr/primops.cc
++++ b/src/libexpr/primops.cc
+@@ -849,6 +849,44 @@ static RegisterPrimOp primop_tryEval({
+     .fun = prim_tryEval,
+ });
+ 
++/* Like tryEval but catch all errors. Success => {success=true; value=something;},
++ * else => {success=false; value=false;} */
++static void prim_catchAll(EvalState & state, const PosIdx pos, Value * * args, Value & v)
++{
++    auto attrs = state.buildBindings(3);
++    try {
++        state.forceValue(*args[0], pos);
++        attrs.insert(state.sValue, args[0]);
++        attrs.alloc("success").mkBool(true);
++        attrs.alloc("msg").mkNull();
++    } catch (Error & e) {
++        attrs.alloc(state.sValue).mkBool(false);
++        attrs.alloc("success").mkBool(false);
++        attrs.alloc("msg").mkString(e.msg());
++    }
++    v.mkAttrs(attrs);
++}
++
++static RegisterPrimOp primop_catchAll({
++    .name = "__catchAll",
++    .args = {"e"},
++    .doc = R"(
++      Try to shallowly evaluate *e*. Return a set containing the
++      attributes `success` (`true` if *e* evaluated successfully,
++      `false` if an error was thrown) and `value`, equalling *e* if
++      successful and `false` otherwise. In contrast with `tryEval`,
++      `catchAll` will prevent all errors from being thrown, including
++      for those created by `abort` and type errors generated by
++      builtins. Also note that this doesn't evaluate *e* deeply, so
++      `let e = { x = throw ""; }; in (builtins.catchAll e).success`
++      will be `true`. Using `builtins.deepSeq` one can get the expected
++      result: `let e = { x = throw ""; }; in
++      (builtins.catchAll (builtins.deepSeq e e)).success` will be
++      `false`.
++    )",
++    .fun = prim_catchAll,
++});
++
+ /* Return an environment variable.  Use with care. */
+ static void prim_getEnv(EvalState & state, const PosIdx pos, Value * * args, Value & v)
+ {
+-- 
+2.51.0
+

pkgs/nix/default.nix

@@ -1,219 +1,7 @@
-{ lib, fetchurl, fetchFromGitHub, callPackage
-, storeDir ? "/nix/store"
-, stateDir ? "/nix/var"
-, confDir ? "/etc"
-, boehmgc
-, stdenv, llvmPackages_6
-}:
+{ nix }:
 
-let
-
-common =
-  { lib, stdenv, fetchpatch, perl, curl, bzip2, sqlite, openssl ? null, xz
-  , bash, coreutils, gzip, gnutar
-  , pkg-config, boehmgc, perlPackages, libsodium, brotli, boost, editline, nlohmann_json
-  , autoreconfHook, autoconf-archive, bison, flex, libxml2, libxslt, docbook5, docbook_xsl_ns
-  , jq, libarchive, rustc, cargo
-  # Used by tests
-  , gmock
-  , busybox-sandbox-shell
-  , storeDir
-  , stateDir
-  , confDir
-  , withLibseccomp ? lib.any (lib.meta.platformMatch stdenv.hostPlatform) libseccomp.meta.platforms, libseccomp
-  , withAWS ? stdenv.isLinux || stdenv.isDarwin, aws-sdk-cpp
-
-  , name, suffix ? "", src, crates ? null
-
-  }:
-  let
-     sh = busybox-sandbox-shell;
-     nix = stdenv.mkDerivation rec {
-      inherit name src;
-      version = lib.getVersion name;
-
-      is24 = lib.versionAtLeast version "2.4pre";
-      isExactly23 = lib.versionAtLeast version "2.3" && lib.versionOlder version "2.4";
-
-      VERSION_SUFFIX = suffix;
-
-      outputs = [ "out" "dev" "man" "doc" ];
-
-      nativeBuildInputs =
-        [ pkg-config ]
-        ++ lib.optionals is24 [ autoreconfHook autoconf-archive bison flex libxml2 libxslt
-                                docbook5 docbook_xsl_ns jq gmock ];
-
-      buildInputs =
-        [ curl openssl sqlite xz bzip2 nlohmann_json
-          brotli boost editline
-        ]
-        ++ lib.optional (stdenv.isLinux || stdenv.isDarwin) libsodium
-        ++ lib.optionals is24 [ libarchive rustc cargo ]
-        ++ lib.optional withLibseccomp libseccomp
-        ++ lib.optional withAWS
-            ((aws-sdk-cpp.override {
-              apis = ["s3" "transfer"];
-              customMemoryManagement = false;
-            }).overrideDerivation (args: {
-              patches = args.patches or [] ++ [(fetchpatch {
-                url = "https://github.com/edolstra/aws-sdk-cpp/commit/7d58e303159b2fb343af9a1ec4512238efa147c7.patch";
-                sha256 = "103phn6kyvs1yc7fibyin3lgxz699qakhw671kl207484im55id1";
-              })];
-            }));
-
-      propagatedBuildInputs = [ boehmgc ];
-
-      # Seems to be required when using std::atomic with 64-bit types
-      NIX_LDFLAGS = lib.optionalString (stdenv.hostPlatform.system == "armv5tel-linux" || stdenv.hostPlatform.system == "armv6l-linux") "-latomic";
-
-      preConfigure =
-        # Copy libboost_context so we don't get all of Boost in our closure.
-        # https://github.com/NixOS/nixpkgs/issues/45462
-        ''
-          mkdir -p $out/lib
-          cp -pd ${boost}/lib/{libboost_context*,libboost_thread*,libboost_system*} $out/lib
-          rm -f $out/lib/*.a
-          ${lib.optionalString stdenv.isLinux ''
-            chmod u+w $out/lib/*.so.*
-            patchelf --set-rpath $out/lib:${stdenv.cc.cc.lib}/lib $out/lib/libboost_thread.so.*
-          ''}
-        '' +
-        # Unpack the Rust crates.
-        lib.optionalString is24 ''
-          tar xvf ${crates} -C nix-rust/
-          mv nix-rust/nix-vendored-crates* nix-rust/vendor
-        '' +
-        # For Nix-2.3, patch around an issue where the Nix configure step pulls in the
-        # build system's bash and other utilities when cross-compiling
-        lib.optionalString (stdenv.buildPlatform != stdenv.hostPlatform && isExactly23) ''
-          mkdir tmp/
-          substitute corepkgs/config.nix.in tmp/config.nix.in \
-            --subst-var-by bash ${bash}/bin/bash \
-            --subst-var-by coreutils ${coreutils}/bin \
-            --subst-var-by bzip2 ${bzip2}/bin/bzip2 \
-            --subst-var-by gzip ${gzip}/bin/gzip \
-            --subst-var-by xz ${xz}/bin/xz \
-            --subst-var-by tar ${gnutar}/bin/tar \
-            --subst-var-by tr ${coreutils}/bin/tr
-          mv tmp/config.nix.in corepkgs/config.nix.in
-          '';
-
-      configureFlags =
-        [ "--with-store-dir=${storeDir}"
-          "--localstatedir=${stateDir}"
-          "--sysconfdir=${confDir}"
-          "--disable-init-state"
-          "--enable-gc"
-        ]
-        ++ lib.optionals stdenv.isLinux [
-          "--with-sandbox-shell=${sh}/bin/busybox"
-        ]
-        ++ lib.optional (
-            stdenv.hostPlatform != stdenv.buildPlatform && stdenv.hostPlatform ? nix && stdenv.hostPlatform.nix ? system
-        ) ''--with-system=${stdenv.hostPlatform.nix.system}''
-           # RISC-V support in progress https://github.com/seccomp/libseccomp/pull/50
-        ++ lib.optional (!withLibseccomp) "--disable-seccomp-sandboxing";
-
-      makeFlags = [ "profiledir=$(out)/etc/profile.d" ];
-
-      installFlags = [ "sysconfdir=$(out)/etc" ];
-
-      doInstallCheck = false;
-
-      # socket path becomes too long otherwise
-      #preInstallCheck = lib.optional stdenv.isDarwin ''
-      #  export TMPDIR=$NIX_BUILD_TOP
-      #'';
-
-      separateDebugInfo = stdenv.isLinux;
-
-      enableParallelBuilding = true;
-
-      meta = {
-        description = "Powerful package manager that makes package management reliable and reproducible";
-        longDescription = ''
-          Nix is a powerful package manager for Linux and other Unix systems that
-          makes package management reliable and reproducible. It provides atomic
-          upgrades and rollbacks, side-by-side installation of multiple versions of
-          a package, multi-user package management and easy setup of build
-          environments.
-        '';
-        homepage = "https://nixos.org/";
-        license = lib.licenses.lgpl2Plus;
-        maintainers = [ lib.maintainers.eelco ];
-        platforms = lib.platforms.unix;
-        outputsToInstall = [ "out" "man" ];
-      };
-
-      passthru = {
-        perl-bindings = stdenv.mkDerivation {
-          pname = "nix-perl";
-          inherit version;
-
-          inherit src;
-
-          postUnpack = "sourceRoot=$sourceRoot/perl";
-
-          # This is not cross-compile safe, don't have time to fix right now
-          # but noting for future travellers.
-          nativeBuildInputs =
-            [ perl pkg-config curl nix libsodium boost autoreconfHook autoconf-archive ];
-
-          configureFlags =
-            [ "--with-dbi=${perlPackages.DBI}/${perl.libPrefix}"
-              "--with-dbd-sqlite=${perlPackages.DBDSQLite}/${perl.libPrefix}"
+nix.overrideAttrs (old: {
+  patches = (old.patches or []) ++ [
+    ./add-catchAll.patch
   ];
-
-          preConfigure = "export NIX_STATE_DIR=$TMPDIR";
-
-          preBuild = "unset NIX_INDENT_MAKE";
-        };
-      };
-    };
-  in nix;
-
-in rec {
-
-  nix = nixUnstable;
-
-  nixUnstable = lib.lowPrio (callPackage common rec {
-    name = "nix-2.4${suffix}";
-    suffix = "pre7534_b92f58f6";
-
-    #src = /home/Computational/rarias/nix/nix-rodarima;
-    src = fetchFromGitHub {
-      owner = "rodarima";
-      repo = "nix";
-      rev = "3a642187c33ed46d952d3a50a83b2576b704fab7";
-      sha256 = "0s8is2czpkcj1x1kcjqgbnsbbl03w3fwjjiclsd44zh1ij3wb90s";
-    };
-
-    crates = fetchurl {
-      url = "https://hydra.nixos.org/build/118797694/download/1/nix-vendored-crates-2.4pre7534_b92f58f6.tar.xz";
-      sha256 = "a4c2612bbd81732bbb899bc0c230e07b16f6b6150ffbb19c4907dedbbc2bf9fc";
-    };
-
-    inherit storeDir stateDir confDir boehmgc;
-  });
-
-  nixFlakes = lib.lowPrio (callPackage common rec {
-    name = "nix-2.4${suffix}";
-    suffix = "pre20200521_00b562c";
-
-    src = fetchFromGitHub {
-      owner = "NixOS";
-      repo = "nix";
-      rev = "00b562c87ec4c3bbe514f5dc1f4d1c41f66f66bf";
-      sha256 = "0s8is2czpkcj1x1kcjqgbnsbbl03w3fwjjiclsd44zh1ij3wb90s";
-    };
-
-    crates = fetchurl {
-      url = "https://hydra.nixos.org/build/118093786/download/1/nix-vendored-crates-2.4pre20200501_941f952.tar.xz";
-      sha256 = "060f4n5srdbb8vsj0m14aqch7im79a4h5g3nrs41p1xc602vhcdl";
-    };
-
-    inherit storeDir stateDir confDir boehmgc;
-  });
-
-}
+})

pkgs/nixgen/default.nix

@@ -0,0 +1,22 @@
+{
+  stdenv
+, lib
+}:
+
+stdenv.mkDerivation {
+  pname = "nixgen";
+  version = "0.0.1";
+  src = ./nixgen;
+  dontUnpack = true;
+  phases = [ "installPhase" ];
+  installPhase = ''
+    mkdir -p $out/bin
+    cp -a $src $out/bin/nixgen
+  '';
+  meta = {
+    description = "Quickly generate flake.nix from command line";
+    maintainers = with lib.maintainers.bsc; [ rarias ];
+    platforms = lib.platforms.linux;
+    license = lib.licenses.gpl3Plus;
+  };
+}

pkgs/nixgen/nixgen

@@ -0,0 +1,97 @@
+#!/bin/sh
+#
+# Copyright (c) 2025, Barcelona Supercomputing Center (BSC)
+# SPDX-License-Identifier: GPL-3.0+
+# Author: Rodrigo Arias Mallo <rodrigo.arias@bsc.es>
+
+function usage() {
+  echo "USAGE: nixgen [-f] [package [...]] [-b package [...]]" >&2
+  echo "  Generates a flake.nix file with the given packages." >&2
+  echo "  After flake.nix is created, use 'nix develop' to enter the shell." >&2
+  echo "OPTIONS" >&2
+  echo "  -f               Overwrite existing flake.nix (default: no)." >&2
+  echo "  packages...      Add these packages to the shell." >&2
+  echo "  -b packages...   Add the dependencies needed to build these packages." >&2
+  echo "EXAMPLE" >&2
+  echo "  $ nixgen ovni bigotes -b nosv tampi" >&2
+  echo "  Adds the packages ovni and bigotes as well as all required dependencies" >&2
+  echo "  to build nosv and tampi." >&2
+  echo "AUTHOR" >&2
+  echo "  Rodrigo Arias Mallo <rodrigo.arias@bsc.es>" >&2
+  exit 1
+}
+
+mode=package
+packages=
+inputsFrom=
+force=
+
+if [[ $# -eq 0 ]]; then
+  usage
+fi
+
+while [[ $# -gt 0 ]]; do
+    case $1 in -b)
+      mode=build
+      shift
+      ;;
+    -f)
+      force=1
+      shift
+      ;;
+    -h)
+      usage
+      ;;
+    -*|--*)
+      echo "error: unknown option $1" >&2
+      exit 1
+      ;;
+    *)
+      if [ "$mode" == "package" ]; then
+        packages+="${packages:+ }$1"
+      else
+        inputsFrom+="${inputsFrom:+ }$1"
+      fi
+      shift
+      ;;
+  esac
+done
+
+if [ ! "$force" -a -e flake.nix ]; then
+  echo "error: flake.nix exists, force overwrite with -f" >&2
+  exit 1
+fi
+
+cat > flake.nix <<EOF
+{
+  inputs.jungle.url = "git+https://jungle.bsc.es/git/rarias/jungle";
+  outputs = { self, jungle }:
+  let
+    nixpkgs = jungle.inputs.nixpkgs;
+    customOverlay = (final: prev: {
+      # Example overlay, for now empty
+    });
+    pkgs = import nixpkgs {
+      system = "x86_64-linux";
+      overlays = [
+        # Apply jungle overlay to get our BSC custom packages
+        jungle.outputs.bscOverlay
+        # And on top apply our local changes to customize for cluster
+        customOverlay
+      ];
+    };
+  in {
+    devShells.x86_64-linux.default = pkgs.mkShell {
+      pname = "devshell";
+      # Include these packages in the shell
+      packages = with pkgs; [
+        $packages
+      ];
+      # The dependencies needed to build these packages will be also included
+      inputsFrom = with pkgs; [
+        $inputsFrom
+      ];
+    };
+  };
+}
+EOF

pkgs/nodes/default.nix

@@ -14,19 +14,19 @@
 , useGit ? false
 , gitUrl ? "ssh://git@gitlab-internal.bsc.es/nos-v/nodes.git"
 , gitBranch ? "master"
-, gitCommit ? "6002ec9ae6eb876d962cc34366952a3b26599ba6"
+, gitCommit ? "511489e71504a44381e0930562e7ac80ac69a848" # version-1.4
 }:
 
 with lib;
 
 let
   release = rec {
-    version = "1.3";
+    version = "1.4";
     src = fetchFromGitHub {
       owner = "bsc-pm";
       repo = "nodes";
       rev = "version-${version}";
-      hash = "sha256-cFb9pxcjtkMmH0CsGgUO9LTdXDNh7MCqicgGWawLrsU=";
+      hash = "sha256-+lR/R0l3fGZO3XG7whMorFW2y2YZ0ZFnLeOHyQYrAsQ=";
     };
   };
 

pkgs/nosv/default.nix

@@ -13,19 +13,19 @@
 , useGit ? false
 , gitUrl ? "git@gitlab-internal.bsc.es:nos-v/nos-v.git"
 , gitBranch ? "master"
-, gitCommit ? "9f47063873c3aa9d6a47482a82c5000a8c813dd8"
+, gitCommit ? "1108e4786b58e0feb9a16fa093010b763eb2f8e8" # version 4.0.0
 }:
 
 with lib;
 
 let
   release = rec {
-    version = "3.2.0";
+    version = "4.0.0";
     src = fetchFromGitHub {
       owner = "bsc-pm";
       repo = "nos-v";
       rev = "${version}";
-      hash = "sha256-yaz92426EM8trdkBJlISmAoG9KJCDTvoAW/HKrasvOw=";
+      hash = "sha256-llaq73bd/YxLVKNlMebnUHKa4z3sdcsuDUoVwUxNuw8=";
     };
   };
 

pkgs/osu/default.nix

@@ -32,6 +32,11 @@ stdenv.mkDerivation rec {
       "CXX=mpicxx"
   ];
 
+  env = {
+    MPICH_CC="${stdenv.cc}/bin/${stdenv.cc.targetPrefix}cc";
+    MPICH_CXX="${stdenv.cc}/bin/${stdenv.cc.targetPrefix}c++";
+  };
+
   postInstall = ''
     mkdir -p $out/bin
     for f in $(find $out -executable -type f); do
@@ -44,5 +49,6 @@ stdenv.mkDerivation rec {
     homepage = "http://mvapich.cse.ohio-state.edu/benchmarks/";
     maintainers = [ ];
     platforms = lib.platforms.all;
+    cross = true;
   };
 }

pkgs/ovni/default.nix

@@ -7,7 +7,7 @@
 , useGit ? false
 , gitBranch ? "master"
 , gitUrl ? "ssh://git@bscpm04.bsc.es/rarias/ovni.git"
-, gitCommit ? "e4f62382076f0cf0b1d08175cf57cc0bc51abc61"
+, gitCommit ? "06432668f346c8bdc1006fabc23e94ccb81b0d8b" # version 1.13.0
 , enableDebug ? false
 # Only enable MPI if the build is native (fails on cross-compilation)
 , useMpi ? (stdenv.buildPlatform.canExecute stdenv.hostPlatform)
@@ -15,13 +15,13 @@
 
 let
   release = rec {
-    version = "1.12.0";
+    version = "1.13.0";
     src = fetchFromGitHub {
       owner = "bsc-pm";
       repo = "ovni";
       rev = "${version}";
-      hash = "sha256-H04JvsVKrdqr3ON7JhU0g17jjlg/jzQ7eTfx9vUNd3E=";
-    } // { shortRev = "a73afcf"; };
+      hash = "sha256-0l2ryIyWNiZqeYdVlnj/WnQGS3xFCY4ICG8JedX424w=";
+    } // { shortRev = "0643266"; };
   };
 
   git = rec {

pkgs/sonar/default.nix

@@ -35,5 +35,6 @@ stdenv.mkDerivation rec {
     maintainers = with lib.maintainers.bsc; [ rarias ];
     platforms = lib.platforms.linux;
     license = lib.licenses.mit;
+    cross = true;
   };
 }

pkgs/tagaspi/default.nix

@@ -5,23 +5,14 @@
 , automake
 , autoconf
 , libtool
-, mpi
 , autoreconfHook
 , gpi-2
 , boost
 , numactl
 , rdma-core
 , gfortran
-, symlinkJoin
 }:
 
-let
-  mpiAll = symlinkJoin {
-    name = "mpi-all";
-    paths = [ mpi.all ];
-  };
-in
-
 stdenv.mkDerivation rec {
   pname = "tagaspi";
   enableParallelBuilding = true;
@@ -35,16 +26,18 @@ stdenv.mkDerivation rec {
     hash = "sha256-RGG/Re2uM293HduZfGzKUWioDtwnSYYdfeG9pVrX9EM=";
   };
 
-  buildInputs = [
+  nativeBuildInputs = [
     autoreconfHook
     automake
     autoconf
     libtool
+    gfortran
+  ];
+
+  buildInputs = [
     boost
     numactl
     rdma-core
-    gfortran
-    mpiAll
   ];
 
   dontDisableStatic = true;
@@ -63,5 +56,6 @@ stdenv.mkDerivation rec {
     maintainers = with lib.maintainers.bsc; [ rarias ];
     platforms = lib.platforms.linux;
     license = lib.licenses.gpl3Plus;
+    cross = false; # gpi-2 cannot cross
   };
 }

pkgs/tampi/default.nix

@@ -68,5 +68,6 @@ in stdenv.mkDerivation {
     maintainers = with lib.maintainers.bsc; [ rarias ];
     platforms = lib.platforms.linux;
     license = lib.licenses.gpl3Plus;
+    cross = true;
   };
 }