Fix C runtime objects path

Some gcc versions append an extension to the patch version number, but this extension is not part of the installation path. This patch removes the extension to the patch version.
Remove dangling ompv symlink
2025-05-28 15:11:25 +02:00 · 2025-05-28 15:03:22 +02:00
22 changed files with 114 additions and 417 deletions
--- a/default.nix
+++ b/default.nix
@@ -1,19 +1,11 @@
 let
  bscOverlay = import ./overlay.nix;

-  # read flake.lock and determine revision from there
-  lock = builtins.fromJSON (builtins.readFile ./flake.lock);
-  inherit (lock.nodes.nixpkgs.locked) rev narHash;
-  fetchedNixpkgs = builtins.fetchTarball {
-    url = "https://github.com/NixOS/nixpkgs/archive/${rev}.tar.gz";
-    sha256 = narHash;
+  # Pin the nixpkgs
+  nixpkgsPath = import ./nixpkgs.nix;
+
+  pkgs = import nixpkgsPath {
+    overlays = [ bscOverlay ];
  };
-in
-{ overlays ? [ ]
-, nixpkgs ? fetchedNixpkgs
-, ...
-}@attrs:
-import nixpkgs (
-  (builtins.removeAttrs attrs [ "overlays" "nixpkgs" ]) //
-  { overlays = [ bscOverlay ] ++ overlays; }
-)
+
+in pkgs
--- a/flake.lock
+++ b/flake.lock
@@ -2,10 +2,10 @@
  "nodes": {
    "nixpkgs": {
      "locked": {
-        "lastModified": 1752436162,
-        "narHash": "sha256-Kt1UIPi7kZqkSc5HVj6UY5YLHHEzPBkgpNUByuyxtlw=",
-        "path": "/nix/store/zk8v61cpk1wprp9ld5ayc1g5fq4pdkwv-source",
-        "rev": "dfcd5b901dbab46c9c6e80b265648481aafb01f8",
+        "lastModified": 1736867362,
+        "narHash": "sha256-i/UJ5I7HoqmFMwZEH6vAvBxOrjjOJNU739lnZnhUln8=",
+        "path": "/nix/store/2csx2kkb2hxyxhhmg2xs9jfyypikwwk6-source",
+        "rev": "9c6b49aeac36e2ed73a8c472f1546f6d9cf1addc",
        "type": "path"
      },
      "original": {
--- a/nixpkgs.nix
+++ b/nixpkgs.nix
@@ -0,0 +1,9 @@
+let
+  commit = "e4ad989506ec7d71f7302cc3067abd82730a4beb";
+in builtins.fetchTarball {
+    # Descriptive name to make the store path easier to identify
+    name = "nixpkgs-${commit}";
+    url = "https://github.com/nixos/nixpkgs/archive/${commit}.tar.gz";
+    # Hash obtained using `nix-prefetch-url --unpack <url>`
+    sha256 = "sha256-de9KYi8rSJpqvBfNwscWdalIJXPo8NjdIZcEJum1mH0=";
+}
--- a/overlay.nix
+++ b/overlay.nix
@@ -13,16 +13,15 @@ let
    bench6 = callPackage ./pkgs/bench6/default.nix { };
    bigotes = callPackage ./pkgs/bigotes/default.nix { };
    clangOmpss2 = callPackage ./pkgs/llvm-ompss2/default.nix { };
-    clangOmpss2Nanos6 = callPackage ./pkgs/llvm-ompss2/default.nix { useNanos6 = true; };
-    clangOmpss2Nodes = callPackage ./pkgs/llvm-ompss2/default.nix { useNodes = true; useOpenmp = true; };
-    clangOmpss2NodesOmpv = callPackage ./pkgs/llvm-ompss2/default.nix { useNodes = true; useOpenmpV = true; };
+    clangOmpss2Nanos6 = callPackage ./pkgs/llvm-ompss2/default.nix { ompss2rt = final.nanos6; };
+    clangOmpss2Nodes = callPackage ./pkgs/llvm-ompss2/default.nix { ompss2rt = final.nodes; openmp = final.openmp; };
+    clangOmpss2NodesOmpv = callPackage ./pkgs/llvm-ompss2/default.nix { ompss2rt = final.nodes; openmp = final.openmpv; };
    clangOmpss2Unwrapped = callPackage ./pkgs/llvm-ompss2/clang.nix { };
-
    #extrae = callPackage ./pkgs/extrae/default.nix { }; # Broken and outdated
-    #gpi-2 = callPackage ./pkgs/gpi-2/default.nix { }; # Broken: https://jungle.bsc.es/git/rarias/bscpkgs/issues/7
+    gpi-2 = callPackage ./pkgs/gpi-2/default.nix { };
    intelPackages_2023 = callPackage ./pkgs/intel-oneapi/2023.nix { };
    jemallocNanos6 = callPackage ./pkgs/nanos6/jemalloc.nix { };
-    lmbench = callPackage ./pkgs/lmbench/default.nix { };
+    #lmbench = callPackage ./pkgs/lmbench/default.nix { }; # Broken
    mcxx = callPackage ./pkgs/mcxx/default.nix { };
    nanos6 = callPackage ./pkgs/nanos6/default.nix { };
    nanos6Debug = final.nanos6.override { enableDebug = true; };
@@ -41,11 +40,11 @@ let
    #pscom = callPackage ./pkgs/parastation/pscom.nix { }; # Unmaintaned
    #psmpi = callPackage ./pkgs/parastation/psmpi.nix { }; # Unmaintaned
    sonar = callPackage ./pkgs/sonar/default.nix { };
-    stdenvClangOmpss2 = final.stdenv.override { cc = final.buildPackages.clangOmpss2; allowedRequisites = null; };
-    stdenvClangOmpss2Nanos6 = final.stdenv.override { cc = final.buildPackages.clangOmpss2Nanos6; allowedRequisites = null; };
-    stdenvClangOmpss2Nodes = final.stdenv.override { cc = final.buildPackages.clangOmpss2Nodes; allowedRequisites = null; };
-    stdenvClangOmpss2NodesOmpv = final.stdenv.override { cc = final.buildPackages.clangOmpss2NodesOmpv; allowedRequisites = null; };
-    #tagaspi = callPackage ./pkgs/tagaspi/default.nix { }; # Broken due gpi-2
+    stdenvClangOmpss2 = final.stdenv.override { cc = final.clangOmpss2; allowedRequisites = null; };
+    stdenvClangOmpss2Nanos6 = final.stdenv.override { cc = final.clangOmpss2Nanos6; allowedRequisites = null; };
+    stdenvClangOmpss2Nodes = final.stdenv.override { cc = final.clangOmpss2Nodes; allowedRequisites = null; };
+    stdenvClangOmpss2NodesOmpv = final.stdenv.override { cc = final.clangOmpss2NodesOmpv; allowedRequisites = null; };
+    tagaspi = callPackage ./pkgs/tagaspi/default.nix { };
    tampi = callPackage ./pkgs/tampi/default.nix { };
    wxparaver = callPackage ./pkgs/paraver/default.nix { };
  };
--- a/pkgs/bench6/default.nix
+++ b/pkgs/bench6/default.nix
@@ -1,20 +1,14 @@
 {
  stdenv
-, bigotes
 , cmake
 , clangOmpss2
-, openmp
-, openmpv
 , nanos6
 , nodes
-, nosv
 , mpi
 , tampi
-, openblas
-, ovni
 , gitBranch ? "master"
 , gitURL ? "ssh://git@bscpm04.bsc.es/rarias/bench6.git"
-, gitCommit ? "bf29a53113737c3aa74d2fe3d55f59868faea7b4"
+, gitCommit ? "1e6ce2aa8ad7b4eef38df1581d7ec48a8815f85d"
 }:

 stdenv.mkDerivation rec {
@@ -27,28 +21,9 @@ stdenv.mkDerivation rec {
    rev = gitCommit;
  };

-  buildInputs = [
-    bigotes
-    cmake
-    clangOmpss2
-    openmp
-    openmpv
-    nanos6
-    nodes
-    nosv
-    mpi
-    tampi
-    openblas
-    openblas.dev
-    ovni
-  ];
-
-  env = {
-    NANOS6_HOME = nanos6;
-    NODES_HOME = nodes;
-    NOSV_HOME = nosv;
-  };
+  buildInputs = [ cmake clangOmpss2 nanos6 nodes mpi tampi ];

+  enableParallelBuilding = false;
  cmakeFlags = [
    "-DCMAKE_C_COMPILER=clang"
    "-DCMAKE_CXX_COMPILER=clang++"
--- a/pkgs/intel-oneapi/2023.nix
+++ b/pkgs/intel-oneapi/2023.nix
@@ -1,5 +1,6 @@
 { stdenv
 , fetchurl
+, ncurses
 , lib
 , dpkg
 , rsync
@@ -9,9 +10,12 @@
 , hwloc
 , zlib
 , autoPatchelfHook
+, symlinkJoin
 , libfabric
-, gcc13
+, gcc
+, gcc7
 , wrapCCWith
+, linuxHeaders
 }:

 # The distribution of intel packages is a mess. We are doing the installation
@@ -26,8 +30,6 @@

 let

-  gcc = gcc13;
-
  v = {
    hpckit   = "2023.1.0";
    compiler = "2023.1.0";
@@ -312,7 +314,6 @@ let
      "intel-oneapi-compiler-dpcpp-cpp-and-cpp-classic-runtime-${version}"
      "intel-oneapi-compiler-dpcpp-cpp-classic-fortran-shared-runtime-${version}"
    ];
-    dontCheckForBrokenSymlinks = true;
    # From https://aur.archlinux.org/packages/intel-oneapi-compiler:
    # - intel-oneapi-compiler-cpp-eclipse-cfg-2023.0.0-25370_all.deb
    # + intel-oneapi-compiler-dpcpp-cpp-2023.0.0-2023.0.0-25370_amd64.deb
@@ -398,9 +399,7 @@ let
        echo "-L${cc}/lib" >> $out/nix-support/cc-ldflags

        # Need the gcc in the path
-        # FIXME: We should find a better way to modify the PATH instead of using
-        # this ugly hack. See https://jungle.bsc.es/git/rarias/bscpkgs/issues/9
-        echo 'path_backup="${mygcc}/bin:$path_backup"' >> $out/nix-support/cc-wrapper-hook
+        echo 'export "PATH=${mygcc}/bin:$PATH"' >> $out/nix-support/cc-wrapper-hook

        # Disable hardening by default
        echo "" > $out/nix-support/add-hardening.sh
--- a/pkgs/llvm-ompss2/clang.nix
+++ b/pkgs/llvm-ompss2/clang.nix
@@ -1,6 +1,5 @@
 {
-  stdenv
-, llvmPackages_latest
+  llvmPackages_latest
 , lib
 , fetchFromGitHub
 , cmake
@@ -12,26 +11,24 @@
 , libffi
 , zlib
 , pkg-config
+, gcc # needed to set the rpath of libstdc++ for clang-tblgen
 , enableDebug ? false
 , useGit ? false
 , gitUrl ? "ssh://git@bscpm04.bsc.es/llvm-ompss/llvm-mono.git"
 , gitBranch ? "master"
-, gitCommit ? "880e2341c56bad1dc14e8c369fb3356bec19018e"
+, gitCommit ? "8c0d267c04d7fc3fb923078f510fcd5f4719a6cc"
 }:

 let
-  llvmPackages = llvmPackages_latest;
-  llvmStdenv = llvmPackages.stdenv;
-  # needed to set the rpath of libstdc++ for clang-tblgen
-  gcc = stdenv.cc;
+  stdenv = llvmPackages_latest.stdenv;

  release = rec {
-    version = "2025.06";
+    version = "2024.11";
    src = fetchFromGitHub {
      owner = "bsc-pm";
      repo = "llvm";
      rev = "refs/tags/github-release-${version}";
-      hash = "sha256-ww9PpRmtz/M9IyLiZ8rAehx2UW4VpQt+svf4XfKBzKo=";
+      hash = "sha256-pF0qa987nLkIJPUrXh1srzBkLPfb31skIegD0bl34Kg=";
    };
  };

@@ -46,7 +43,7 @@ let

  source = if (useGit) then git else release;

-in llvmStdenv.mkDerivation rec {
+in stdenv.mkDerivation rec {
  pname = "clang-ompss2";
  inherit (source) src version;

@@ -60,23 +57,20 @@ in llvmStdenv.mkDerivation rec {

  isClangWithOmpss = true;

-  nativeBuildInputs = [
-    zlib
-    gcc.cc.lib # Required for libstdc++.so.6
-    cmake
-    python3
-    llvmPackages.lld
-  ];
+  nativeBuildInputs = [ zlib ];

  buildInputs = [
    which
    bash
+    python3
    perl
-    llvmPackages.lld
+    cmake
+    llvmPackages_latest.lld
    elfutils
    libffi
    pkg-config
    zlib
+    gcc.cc.lib # Required for libstdc++.so.6
  ];

  # Error with -D_FORTIFY_SOURCE=2, see https://bugs.gentoo.org/636604:
@@ -92,7 +86,6 @@ in llvmStdenv.mkDerivation rec {

  dontUseCmakeBuildDir = true;

-
  # Fix the host triple, as it has changed in a newer config.guess:
  # https://git.savannah.gnu.org/gitweb/?p=config.git;a=commitdiff;h=ca9bfb8cc75a2be1819d89c664a867785c96c9ba
  preConfigure = ''
@@ -100,13 +93,8 @@ in llvmStdenv.mkDerivation rec {
    cd build
    cmakeDir="../llvm"
    cmakeFlagsArray=(
-      "-DLLVM_HOST_TRIPLE=${llvmStdenv.targetPlatform.config}"
-    '' + (if "${llvmStdenv.targetPlatform.config}" == "riscv64-unknown-linux-gnu" then ''
-      "-DLLVM_DEFAULT_TARGET_TRIPLE=riscv64-unknown-linux-gnu"
-      "-DLLVM_TARGETS_TO_BUILD=RISCV"
-    '' else ''
+      "-DLLVM_HOST_TRIPLE=${stdenv.targetPlatform.config}"
      "-DLLVM_TARGETS_TO_BUILD=host"
-    '') + ''
      "-DLLVM_BUILD_LLVM_DYLIB=ON"
      "-DLLVM_LINK_LLVM_DYLIB=ON"
      # Required to run clang-ast-dump and clang-tblgen during build
@@ -115,8 +103,7 @@ in llvmStdenv.mkDerivation rec {
      "-DCMAKE_CXX_FLAGS_DEBUG=-g -ggnu-pubnames"
      "-DCMAKE_EXE_LINKER_FLAGS_DEBUG=-Wl,--gdb-index"
      "-DLLVM_LIT_ARGS=-sv --xunit-xml-output=xunit.xml"
-      "-DLLVM_ENABLE_PROJECTS=clang;lld"
-      #"-DLLVM_ENABLE_PROJECTS=clang;compiler-rt;lld"
+      "-DLLVM_ENABLE_PROJECTS=clang;compiler-rt;lld"
      "-DLLVM_ENABLE_ASSERTIONS=ON"
      "-DLLVM_INSTALL_TOOLCHAIN_ONLY=ON"
      "-DCMAKE_INSTALL_BINDIR=bin"
@@ -126,8 +113,8 @@ in llvmStdenv.mkDerivation rec {
      # install
      "-DCMAKE_INSTALL_RPATH_USE_LINK_PATH=ON"
      "-DCMAKE_INSTALL_RPATH=${zlib}/lib:${gcc.cc.lib}/lib"
-      #"-DLLVM_APPEND_VC_REV=ON"
-      #"-DLLVM_FORCE_VC_REVISION=${source.version}"
+      "-DLLVM_APPEND_VC_REV=ON"
+      "-DLLVM_FORCE_VC_REVISION=${source.version}"
    )
  '';

--- a/pkgs/llvm-ompss2/default.nix
+++ b/pkgs/llvm-ompss2/default.nix
@@ -3,43 +3,25 @@
 , lib
 , gcc
 , clangOmpss2Unwrapped
-
-, openmp
-, useOpenmp  ? false
-, openmpv
-, useOpenmpV ? false
-, nanos6
-, useNanos6 ? false
-, nodes
-, useNodes ? false
-
+, openmp ? null
 , wrapCCWith
 , llvmPackages_latest
+, ompss2rt ? null
 }:

 with lib;

 let
-  getSplice = target: pkg: if pkg ? "__spliced" && pkg.__spliced ? target then pkg.__spliced."${target}" else pkg;
-  #getSpliceTargetTarget = pkg: if pkg ? "__spliced" && pkg.__spliced ? "targetTarget" then pkg.__spliced.targetTarget else pkg;
-  getSpliceTargetTarget = getSplice "targetTarget";
-  omp = if useOpenmp then openmp else if useOpenmpV then openmpv else null;
-  ompss2rtUnspliced = if useNanos6 then nanos6 else if useNodes then nodes else null;
-  ompss2rt = getSpliceTargetTarget ompss2rtUnspliced;
-  usingNodesAndOmpv = (omp.pname == "openmp-v" && ompss2rt.pname == "nodes");
-  sameNosvUnspliced = omp.nosv == ompss2rtUnspliced.nosv;
-  sameNosvSpliced = (getSpliceTargetTarget omp.nosv) == ompss2rt.nosv;
+  usingNodesAndOmpv = (openmp.pname == "openmp-v" && ompss2rt.pname == "nodes");
+  sameNosv = openmp.nosv == ompss2rt.nosv;
 in

-assert assertMsg (usingNodesAndOmpv -> sameNosvUnspliced) "OpenMP-V and NODES must share the same nOS-V before splice";
-assert assertMsg (usingNodesAndOmpv -> sameNosvSpliced) "OpenMP-V and NODES must share the same nOS-V after splice";
-assert assertMsg (useOpenmp -> !useOpenmpV) "Either OpenMP or OpenMP-V may be enabled, but not both";
-assert assertMsg (useNanos6 -> !useNodes) "Either Nanos6 or NODES may be enabled, but not both";
+assert assertMsg (usingNodesAndOmpv -> sameNosv) "OpenMP-V and NODES must share the same nOS-V";

 let
  homevar = if ompss2rt.pname == "nanos6" then "NANOS6_HOME" else "NODES_HOME";
  rtname  = if ompss2rt.pname == "nanos6" then "libnanos6" else "libnodes";
-  ompname = if omp.pname == "openmp-v" then  "libompv" else "libomp";
+  ompname = if openmp.pname == "openmp-v" then  "libompv" else "libomp";


  # We need to replace the lld linker from bintools with our linker just built,
@@ -55,13 +37,12 @@ let
  inherit gcc;
  cc = clangOmpss2Unwrapped;
  gccVersion = with versions; let v = gcc.version; in concatStringsSep "." [(major v) (minor v) (patch v)];
-in (wrapCCWith {
+in wrapCCWith {
  inherit cc bintools;
  # extraPackages adds packages to depsTargetTargetPropagated
-  extraPackages = optional (omp != null) omp;
+  extraPackages = optional (openmp != null) openmp;
  extraBuildCommands = ''
    echo "-target ${targetConfig}" >> $out/nix-support/cc-cflags
-    #echo "-fuse-ld=lld" >> $out/nix-support/cc-cflags
    echo "-B${gcc.cc}/lib/gcc/${targetConfig}/${gccVersion}" >> $out/nix-support/cc-cflags
    echo "-L${gcc.cc}/lib/gcc/${targetConfig}/${gccVersion}" >> $out/nix-support/cc-ldflags
    echo "-L${gcc.cc.lib}/lib" >> $out/nix-support/cc-ldflags
@@ -75,17 +56,15 @@ in (wrapCCWith {

    echo "--gcc-toolchain=${gcc}" >> $out/nix-support/cc-cflags

-    wrap ${targetConfig}clang++  $wrapper $ccPath/clang++
-    wrap ${targetConfig}clang    $wrapper $ccPath/clang
+    wrap clang++  $wrapper $ccPath/clang++

-  '' + optionalString (omp != null) ''
+  '' + optionalString (openmp != null) ''
    echo "export OPENMP_RUNTIME=${ompname}" >> $out/nix-support/cc-wrapper-hook
  '' + optionalString (ompss2rt != null) ''
    echo "export OMPSS2_RUNTIME=${rtname}" >> $out/nix-support/cc-wrapper-hook
    echo "export ${homevar}=${ompss2rt}"   >> $out/nix-support/cc-wrapper-hook
  '' + optionalString (ompss2rt != null && ompss2rt.pname == "nodes") ''
-    echo "export NOSV_HOME=${ompss2rt}" >> $out/nix-support/cc-wrapper-hook
+    echo "export NOSV_HOME=${ompss2rt.nosv}" >> $out/nix-support/cc-wrapper-hook
  '';
-}) // { inherit ompss2rt; }
-
+}

--- a/pkgs/llvm-ompss2/openmp.nix
+++ b/pkgs/llvm-ompss2/openmp.nix
@@ -39,9 +39,6 @@ stdenv.mkDerivation rec {
    perl
    pkg-config
    python3
-  ];
-
-  buildInputs = [
  ] ++ lib.optionals enableNosv [
    nosv
  ] ++ lib.optionals enableOvni [
--- a/pkgs/lmbench/default.nix
+++ b/pkgs/lmbench/default.nix
@@ -1,41 +1,35 @@
 {
  lib,
  stdenv,
-  libtirpc,
  fetchFromGitHub
 }:

 stdenv.mkDerivation rec {
  pname = "lmbench";
-  version = "941a0dcc";
+  version = "701c6c35";

  # We use the intel repo as they have fixed some problems
  src = fetchFromGitHub {
    owner = "intel";
    repo = pname;
-    rev = "941a0dcc0e7bdd9bb0dee05d7f620e77da8c43af";
-    sha256 = "sha256-SzwplRBO3V0R3m3p15n71ivYBMGoLsajFK2TapYxdqk=";
+    rev = "701c6c35b0270d4634fb1dc5272721340322b8ed";
+    sha256 = "0sf6zk03knkardsfd6qx7drpm56nhg53n885cylkggk83r38idyr";
  };

+  postUnpack = ''
+    export sourceRoot="$sourceRoot/src"
+  '';
+
  postPatch = ''
    sed -i "s@/bin/rm@rm@g" $(find . -name Makefile)
  '';

-  buildInputs = [ libtirpc ];
-  patches = [ ./fix-install.patch ./gcc-14.patch ];
-
  hardeningDisable = [ "all" ];

  enableParallelBuilding = false;

  preBuild = ''
-    makeFlagsArray+=(
-      -C src
-      BASE=$out
-      CFLAGS=-Wno-implicit-int
-      CPPFLAGS=-I${libtirpc.dev}/include/tirpc
-      LDFLAGS=-ltirpc
-    )
+    makeFlagsArray+=(BASE=$out)
  '';

  meta = {
--- a/pkgs/lmbench/fix-install.patch
+++ b/pkgs/lmbench/fix-install.patch
@@ -1,10 +0,0 @@
--- a/src/Makefile
-+++ b/src/Makefile
-@@ -144,6 +144,7 @@ install-target:
- 	if [ ! -d $(BASE)/include ]; then mkdir $(BASE)/include; fi
- 	if [ ! -d $(BASE)/lib ]; then mkdir $(BASE)/lib; fi
- 	cp $(EXES) $(BASE)/bin
-+	cp $(OPT_EXES) $(BASE)/bin
- 	cp $(INCS) $(BASE)/include
- 	cp $O/lmbench.a $(BASE)/lib/libmbench.a
- 	cd ../doc; env MAKEFLAGS="$(MAKEFLAGS)" make CC="${CC}" OS="${OS}" BASE="$(BASE)" install
--- a/pkgs/lmbench/gcc-14.patch
+++ b/pkgs/lmbench/gcc-14.patch
@@ -1,77 +0,0 @@
-From a3c6e7d303cd8368e8d4e35be7cbc1997e801257 Mon Sep 17 00:00:00 2001
-From: Rodrigo Arias Mallo <rodrigo.arias@bsc.es>
-Date: Mon, 21 Jul 2025 17:38:58 +0200
-Subject: [PATCH] Misc fixes to build with gcc 14
-
---
- src/bench.h      | 2 ++
- src/lat_select.c | 2 +-
- src/lib_debug.c  | 1 +
- src/lib_sched.c  | 2 +-
- src/lib_timing.c | 2 +-
- 5 files changed, 6 insertions(+), 3 deletions(-)
-
-diff --git a/src/bench.h b/src/bench.h
-index 8166408..4da9079 100644
--- a/src/bench.h
-+++ b/src/bench.h
-@@ -320,4 +320,6 @@ extern int handle_scheduler(int childno, int benchproc, int nbenchprocs);
- extern char *rpc_xact_1();
- extern char *client_rpc_xact_1();
- 
-+void lmbench_usage(int argc, char *argv[], char* usage);
-+
- #endif /* _BENCH_H */
-diff --git a/src/lat_select.c b/src/lat_select.c
-index 583b505..39df369 100644
--- a/src/lat_select.c
-+++ b/src/lat_select.c
-@@ -164,7 +164,7 @@ doit(iter_t iterations, void * cookie)
- 	state_t * 	state = (state_t *)cookie;
- 	fd_set		nosave;
- 	static struct timeval tv;
-	static count = 0;
-+	static int count = 0;
- 	
- 	tv.tv_sec = 0;
- 	tv.tv_usec = 0;
-diff --git a/src/lib_debug.c b/src/lib_debug.c
-index e8347dd..cf65312 100644
--- a/src/lib_debug.c
-+++ b/src/lib_debug.c
-@@ -1,5 +1,6 @@
- #include "bench.h"
- #include "lib_debug.h"
-+#include <math.h>
- 
- /*
-  * return micro-seconds / iteration at the the fraction point.
-diff --git a/src/lib_sched.c b/src/lib_sched.c
-index aa83ae0..4f16bbf 100644
--- a/src/lib_sched.c
-+++ b/src/lib_sched.c
-@@ -91,7 +91,7 @@ handle_scheduler(int childno, int benchproc, int nbenchprocs)
- 			     childno * (nbenchprocs + 1) + benchproc);
- 	} else {
- 		/* default action: do nothing */
-		return;
-+		return 0;
- 	}
- 
- 	return sched_pin(cpu % sched_ncpus());
-diff --git a/src/lib_timing.c b/src/lib_timing.c
-index af8cf68..7ec9652 100644
--- a/src/lib_timing.c
-+++ b/src/lib_timing.c
-@@ -1623,7 +1623,7 @@ bread(void* buf, long nbytes)
- void
- touch(char *buf, int nbytes)
- {
-	static	psize;
-+	static int psize;
- 
- 	if (!psize) {
- 		psize = getpagesize();
-- 
-2.49.0
-
--- a/pkgs/nanos6/default.nix
+++ b/pkgs/nanos6/default.nix
@@ -19,7 +19,7 @@
 , useGit ? false
 , gitUrl ? "ssh://git@bscpm04.bsc.es/nanos6/nanos6"
 , gitBranch ? "master"
-, gitCommit ? "f82762b66c82b5174a8eaad33f6c2f335ac759b4"
+, gitCommit ? "9f54c988e0a8b9c011d9d526acdb8d76f18fcae4"
 }:

 assert enableJemalloc -> (jemallocNanos6 != null);
@@ -28,12 +28,12 @@ with lib;

 let
  release = rec {
-    version = "4.3";
+    version = "4.2";
    src = fetchFromGitHub {
      owner = "bsc-pm";
      repo = "nanos6";
      rev = "version-${version}";
-      hash = "sha256-/c6WiKBsAo/01uvMRmjv0PMucbrgvaGmbxlPE6q+dfE=";
+      hash = "sha256-tBrRGLCjSFYdmVGPAC2DzYY6HJyZGUOMeykujafn7+4=";
    };
  };

--- a/pkgs/nosv/default.nix
+++ b/pkgs/nosv/default.nix
@@ -11,19 +11,19 @@
 , useGit ? false
 , gitUrl ? "git@gitlab-internal.bsc.es:nos-v/nos-v.git"
 , gitBranch ? "master"
-, gitCommit ? "9f47063873c3aa9d6a47482a82c5000a8c813dd8"
+, gitCommit ? "cfd361bd1dd30c96da405e6bbaa7e78f5f93dfda"
 }:

 with lib;

 let
  release = rec {
-    version = "3.2.0";
+    version = "3.1.0";
    src = fetchFromGitHub {
      owner = "bsc-pm";
      repo = "nos-v";
      rev = "${version}";
-      hash = "sha256-yaz92426EM8trdkBJlISmAoG9KJCDTvoAW/HKrasvOw=";
+      hash = "sha256-Pkre+ZZsREDxJLCoIoPN1HQDuUa2H1IQyKB3omg6qaU=";
    };
  };

--- a/pkgs/ovni/default.nix
+++ b/pkgs/ovni/default.nix
@@ -7,7 +7,7 @@
 , useGit ? false
 , gitBranch ? "master"
 , gitUrl ? "ssh://git@bscpm04.bsc.es/rarias/ovni.git"
-, gitCommit ? "e4f62382076f0cf0b1d08175cf57cc0bc51abc61"
+, gitCommit ? "a7103f8510d1ec124c3e01ceb47d1e443e98bbf4"
 , enableDebug ? false
 # Only enable MPI if the build is native (fails on cross-compilation)
 , useMpi ? (stdenv.buildPlatform.canExecute stdenv.hostPlatform)
@@ -17,13 +17,13 @@ with lib;

 let
  release = rec {
-    version = "1.12.0";
+    version = "1.11.0";
    src = fetchFromGitHub {
      owner = "bsc-pm";
      repo = "ovni";
      rev = "${version}";
-      hash = "sha256-H04JvsVKrdqr3ON7JhU0g17jjlg/jzQ7eTfx9vUNd3E=";
-    } // { shortRev = "a73afcf"; };
+      hash = "sha256-DEZUK1dvbPGH5WYkZ2hpP5PShkMxXkHOqMwgYUHHxeM=";
+    } // { shortRev = "a7103f8"; };
  };

  git = rec {
--- a/pkgs/paraver/default.nix
+++ b/pkgs/paraver/default.nix
@@ -1,6 +1,5 @@
 {
  stdenv
-, fetchFromGitHub
 , autoreconfHook
 , boost
 , libxml2
@@ -19,23 +18,14 @@ let
 in
 stdenv.mkDerivation rec {
  pname = "wxparaver";
-  version = "4.12.0";
+  version = "4.11.2";

-  src = fetchFromGitHub {
-    owner = "bsc-performance-tools";
-    repo = "wxparaver";
-    rev = "v${version}";
-    sha256 = "sha256-YsO5gsuEFQdki3lQudEqgo5WXOt/fPdvNw5OxZQ86Zo=";
+  src = builtins.fetchGit {
+    url = "https://github.com/bsc-performance-tools/wxparaver.git";
+    rev = "129e6b4a4f061e5a319049db8db1620f5de3bd70"; # v4.11.2 (missing tag)
+    ref = "master";
  };

-  patches = [
-    ./do-not-steal-focus-on-redraw.patch
-
-    # Fix for boost >=1.87 (thanks to gamezelda)
-    # https://aur.archlinux.org/cgit/aur.git/commit/?h=wxparaver&id=b0dcd08c472536e0a1a3cc1dfbc4c77d9f5e0d47
-    ./fix-boost-87.patch
-  ];
-
  hardeningDisable = [ "all" ];

  # Fix the PARAVER_HOME variable
--- a/pkgs/paraver/do-not-steal-focus-on-redraw.patch
+++ b/pkgs/paraver/do-not-steal-focus-on-redraw.patch
@@ -1,26 +0,0 @@
-From 2b185e1b5ce52808b3026334851dbcd5a640ed4d Mon Sep 17 00:00:00 2001
-From: aleixbonerib <aleix.boneribo@bsc.es>
-Date: Mon, 10 Jun 2024 20:59:45 +0200
-Subject: [PATCH] fix: do not set focus on redraw
-
-Some wm can change the window size without focusing. Right now, when the
-plot is resized it takes back focus.
---
- src/gtimeline.cpp | 1 -
- 1 file changed, 1 deletion(-)
-
-diff --git a/src/gtimeline.cpp b/src/gtimeline.cpp
-index 23ebef2..a896066 100644
--- a/src/gtimeline.cpp
-+++ b/src/gtimeline.cpp
-@@ -899,7 +899,6 @@ void gTimeline::redraw()
- 
-   drawZone->Refresh();
- 
-  SetFocus();
- }
- 
- 
-- 
-2.44.1
-
--- a/pkgs/paraver/dont-expand-colors.patch
+++ b/pkgs/paraver/dont-expand-colors.patch
@@ -11,7 +11,7 @@ diff --git a/api/semanticcolor.cpp b/api/semanticcolor.cpp
 index 9f86960..22859eb 100644
 --- a/api/semanticcolor.cpp
 +++ b/api/semanticcolor.cpp
-@@ -295,8 +295,9 @@ rgb SemanticColor::getColor( PRV_UINT32 pos ) const
+@@ -232,8 +232,9 @@ rgb CodeColor::getColor( PRV_UINT32 pos ) const
 {
   if( pos == 0 && ParaverConfig::getInstance()->getColorsTimelineUseZero() )
     return ParaverConfig::getInstance()->getColorsTimelineColorZero();
@@ -22,26 +22,26 @@ index 9f86960..22859eb 100644
 +  return colors[ pos + 1 ];
 }
 
- void SemanticColor::setColor( PRV_UINT32 whichPos, rgb whichColor )
-@@ -314,6 +315,12 @@ void SemanticColor::setColor( PRV_UINT32 whichPos, rgb whichColor )
+ void CodeColor::setColor( PRV_UINT32 whichPos, rgb whichColor )
+@@ -250,6 +251,12 @@ void CodeColor::setColor( PRV_UINT32 whichPos, rgb whichColor )
   colors[ whichPos ] = whichColor;
 }
 
-+void SemanticColor::cutAfter( PRV_UINT32 pos )
+void CodeColor::cutAfter( PRV_UINT32 pos )
 +{
 +  if ( pos < colors.size() )
 +    colors.erase( colors.begin() + pos, colors.end() );
 +}
 +
- void SemanticColor::setCustomColor( TSemanticValue whichValue, rgb color ) 
+ void CodeColor::setCustomColor( TSemanticValue whichValue, rgb color ) 
 {
   customPalette[ whichValue ] = color;
 diff --git a/api/semanticcolor.h b/api/semanticcolor.h
 index a079556..bddf3d8 100644
 --- a/api/semanticcolor.h
 +++ b/api/semanticcolor.h
-@@ -114,6 +114,7 @@ class SemanticColor
-     // Code Color methods
+@@ -98,6 +98,7 @@ class CodeColor: public SemanticColor
+ 
     PRV_UINT32 getNumColors() const;
     void setColor( PRV_UINT32 pos, rgb color );
 +    void cutAfter( PRV_UINT32 pos );
@@ -61,7 +61,7 @@ index b0d2050..ee2ab69 100644
   for ( auto it : semanticColors )
   {
     std::tie( tmpColor.red, tmpColor.green, tmpColor.blue ) = it.second;
-     mySemanticColor.setColor( it.first, tmpColor );
+     myCodeColor.setColor( it.first, tmpColor );
 +	if (it.first > maxValue)
 +      maxValue = it.first;
   }
@@ -69,7 +69,7 @@ index b0d2050..ee2ab69 100644
 +  // Cut the palette after the highest defined value, so there are no
 +  // extra expanded values
 +  if ( !pcfParser.expandColors )
-+	mySemanticColor.cutAfter(maxValue);
+	myCodeColor.cutAfter(maxValue);
 +
   myEventLabels = EventLabels( pcfParser );
   myStateLabels = StateLabels( pcfParser );
--- a/pkgs/paraver/fix-boost-87.patch
+++ b/pkgs/paraver/fix-boost-87.patch
@@ -1,87 +0,0 @@
-From 7ecd888e2ebb9e8c5582851d3c50bff61022708e Mon Sep 17 00:00:00 2001
-From: =?UTF-8?q?Joan=20Bruguera=20Mic=C3=B3?= <joanbrugueram@gmail.com>
-Date: Sat, 29 Mar 2025 18:14:25 +0000
-Subject: [PATCH] tutorialsdownload: Fix Boost ASIO 1.87.0 removals
-
---
- src/tutorialsdownload.cpp | 25 ++++++++++++-------------
- 1 file changed, 12 insertions(+), 13 deletions(-)
-
-diff --git a/src/tutorialsdownload.cpp b/src/tutorialsdownload.cpp
-index a1921fd..6ce9dc2 100644
--- a/src/tutorialsdownload.cpp
-+++ b/src/tutorialsdownload.cpp
-@@ -121,13 +121,13 @@ void TutorialsProgress::updateInstall( int whichValue )
- class client
- {
-   public:
-    client( boost::asio::io_service& io_service,
-+    client( boost::asio::io_context& io_context,
-             boost::asio::ssl::context& context,
-             const std::string& server, const std::string& path,
-             ofstream& storeFile,
-             TutorialsProgress *progress )
-            : resolver_( io_service ),
-              socket_( io_service, context ),
-+            : resolver_( io_context ),
-+              socket_( io_context, context ),
-               store_( storeFile ),
-               progress_( progress )
-     {
-@@ -143,8 +143,7 @@ class client
- 
-         // Start an asynchronous resolve to translate the server and service names
-         // into a list of endpoints.
-        tcp::resolver::query query( server, "https" );
-        resolver_.async_resolve( query,
-+        resolver_.async_resolve( server, "https",
-                                  boost::bind( &client::handle_resolve,
-                                               this,
-                                               boost::asio::placeholders::error,
-@@ -154,7 +153,7 @@ class client
-   private:
- 
-     void handle_resolve( const boost::system::error_code& err,
-                         tcp::resolver::iterator endpoint_iterator )
-+                         const tcp::resolver::results_type& endpoints )
-     {
-       if ( !err )
-       {
-@@ -162,7 +161,7 @@ class client
-         socket_.set_verify_callback( boost::bind( &client::verify_certificate, this, _1, _2 ) );
- 
-         boost::asio::async_connect( socket_.lowest_layer(), 
-                                    endpoint_iterator,
-+                                    endpoints,
-                                     boost::bind( &client::handle_connect, 
-                                                  this,
-                                                  boost::asio::placeholders::error ) );
-@@ -536,9 +535,9 @@ bool TutorialsDownload::downloadTutorialsList() const
-     boost::asio::ssl::context ctx( boost::asio::ssl::context::sslv23 );
-     ctx.set_default_verify_paths();
- 
-    boost::asio::io_service io_service;
-    client c( io_service, ctx, server, path, storeFile, nullptr );
-    io_service.run();
-+    boost::asio::io_context io_context;
-+    client c( io_context, ctx, server, path, storeFile, nullptr );
-+    io_context.run();
- 
-     doneDownload = true;
-   }
-@@ -580,9 +579,9 @@ bool TutorialsDownload::download( const TutorialData& whichTutorial, string& tut
-     boost::asio::ssl::context ctx( boost::asio::ssl::context::sslv23 );
-     ctx.set_default_verify_paths();
- 
-    boost::asio::io_service io_service;
-    client c( io_service, ctx, std::string( server.mb_str() ), std::string( path.mb_str() ), storeFile, &progress );
-    io_service.run();
-+    boost::asio::io_context io_context;
-+    client c( io_context, ctx, std::string( server.mb_str() ), std::string( path.mb_str() ), storeFile, &progress );
-+    io_context.run();
-   }
-   catch ( ParaverKernelException& e )
-   {
-- 
-2.49.0
-
--- a/pkgs/paraver/fix-libxml2-deprecation.patch
+++ b/pkgs/paraver/fix-libxml2-deprecation.patch
@@ -1,23 +0,0 @@
-commit 60aa3ffa05f6b40db191a880e9e622d608744c1f
-Author: Aleix Boné <aleix.boneribo@bsc.es>
-Date:   Sun Jul 21 12:11:30 2025 +0200
-
-    fix libxml2 deprecated macro
-
-diff --git a/configure.ac b/configure.ac
-index 7fe1876..3ce1091 100644
--- a/configure.ac
-+++ b/configure.ac
-@@ -46,7 +46,10 @@ AC_PROG_CPP
- AC_PROG_CXXCPP
- AC_PROG_SED
- 
-AM_PATH_XML2
-+PKG_PROG_PKG_CONFIG
-+PKG_CHECK_MODULES([XML], [libxml-2.0])
-+
-+AC_SUBST(XML_CPPFLAGS, $XML_CFLAGS)
- 
- AX_BOOST_BASE(1.36)
- AX_BOOST_SERIALIZATION
-
--- a/pkgs/paraver/kernel.nix
+++ b/pkgs/paraver/kernel.nix
@@ -1,32 +1,32 @@
 {
  stdenv
-, fetchFromGitHub
 , autoreconfHook
 , boost
 , libxml2
 , xml2
+, wxGTK32
 , autoconf
 , automake
 , pkg-config
 , zlib
 }:

+let
+  wx = wxGTK32;
+in
 stdenv.mkDerivation rec {
  pname = "paraver-kernel";
-  version = "4.12.0";
+  version = "${src.shortRev}";

-  src = fetchFromGitHub {
-    owner = "bsc-performance-tools";
-    repo = "paraver-kernel";
-    rev = "v${version}";
-    sha256 = "sha256-Xs7g8ITZhPt00v7o2WlTddbou8C8Rc9kBMFpl2WsCS4=";
+  src = builtins.fetchGit {
+    url = "https://github.com/bsc-performance-tools/paraver-kernel.git";
+    rev = "2e167da3cee78ca11e31b74faefb23f12bac2b8c"; # master (missing tag)
+    ref = "master";
  };

  patches = [
    # https://github.com/bsc-performance-tools/paraver-kernel/pull/11
-    # TODO: add this back if it's still relevant
-    # ./dont-expand-colors.patch
-    ./fix-libxml2-deprecation.patch
+    ./dont-expand-colors.patch
  ];

  hardeningDisable = [ "all" ];
--- a/pkgs/tampi/default.nix
+++ b/pkgs/tampi/default.nix
@@ -15,7 +15,7 @@
 , useGit ? false
 , gitUrl ? "ssh://git@bscpm04.bsc.es/interoperability/tampi.git"
 , gitBranch ? "master"
-, gitCommit ? "f6455db9d3124ae36e715a4874fd49720e79f20a"
+, gitCommit ? "a5c93bf8ab045b71ad4a8d5e2c991ce774db5cbc"
 }:

 with lib;
@@ -24,12 +24,12 @@ assert enableOvni -> (ovni != null);

 let
  release = rec {
-    version = "4.1";
+    version = "4.0";
    src = fetchFromGitHub {
      owner = "bsc-pm";
      repo = "tampi";
      rev = "v${version}";
-      hash = "sha256-SwfPSnwcZnRnSgNvCD5sFSUJRpWINqI5I4adj5Hh+XY=";
+      hash = "sha256-R7ew5tsrxGReTvOeeZe1FD0oThBhOHoDGv6Mo2sbmDg=";
    };
  };
  git = rec {
@@ -46,16 +46,15 @@ in stdenv.mkDerivation rec {
  inherit (source) src version;
  enableParallelBuilding = true;
  separateDebugInfo = true;
-  nativeBuildInputs = [
+  buildInputs = [
    autoreconfHook
    automake
    autoconf
    libtool
    gnumake
-  ];
-  buildInputs = [
    boost
    mpi
+    gcc
  ] ++ optional (enableOvni) ovni;
  configureFlags = optional (enableOvni) "--with-ovni=${ovni}";
  dontDisableStatic = true;
Author	SHA1	Message	Date
Aleix Roca Nonell	169ec60e71	Fix C runtime objects path Some gcc versions append an extension to the patch version number, but this extension is not part of the installation path. This patch removes the extension to the patch version.	2025-05-28 15:11:25 +02:00
Aleix Roca Nonell	b72fef45ff	Remove dangling ompv symlink	2025-05-28 15:03:22 +02:00