Fetch website from its own git repository

Reviewed-by: Aleix Boné <abonerib@bsc.es>

.gitea/workflows/ci.yaml

@@ -1,20 +0,0 @@
-name: CI
-on:
-  push:
-    branches:
-      - master
-  pull_request:
-    branches:
-      - master
-
-jobs:
-  build:all:
-    runs-on: native
-    steps:
-      - uses: https://gitea.com/ScMi1/checkout@v1.4
-      - run: nix build -L --no-link --print-out-paths .#bsc.ci.all
-  build:cross:
-    runs-on: native
-    steps:
-      - uses: https://gitea.com/ScMi1/checkout@v1.4
-      - run: nix build -L --no-link --print-out-paths .#bsc.ci.cross

.gitignore

@@ -1,3 +1,3 @@
-**.swp
+*.swp
 /result
 /misc

.gitlab-ci.yml

@@ -1,6 +0,0 @@
-build:bsc-ci.all:
-  stage: build
-  tags:
-    - nix
-  script:
-    - nix build -L --no-link --print-out-paths .#bsc-ci.all

COPYING

@@ -1,21 +0,0 @@
-Copyright (c) 2020-2025 Barcelona Supercomputing Center
-Copyright (c) 2003-2020 Eelco Dolstra and the Nixpkgs/NixOS contributors
-
-Permission is hereby granted, free of charge, to any person obtaining
-a copy of this software and associated documentation files (the
-"Software"), to deal in the Software without restriction, including
-without limitation the rights to use, copy, modify, merge, publish,
-distribute, sublicense, and/or sell copies of the Software, and to
-permit persons to whom the Software is furnished to do so, subject to
-the following conditions:
-
-The above copyright notice and this permission notice shall be
-included in all copies or substantial portions of the Software.
-
-THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
-EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
-MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
-NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE
-LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION
-OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION
-WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.

README.md

@@ -1,9 +0,0 @@
-# Jungle
-
-This repository provides two components that can be used independently:
-
-- A Nix overlay with packages used at BSC (formerly known as bscpkgs). Access
-  them directly with `nix shell .#<pkgname>`.
-
-- NixOS configurations for jungle machines. Use `nixos-rebuild switch --flake .`
-  to upgrade the current machine.

default.nix

@@ -1,19 +0,0 @@
-let
-  bscOverlay = import ./overlay.nix;
-
-  # read flake.lock and determine revision from there
-  lock = builtins.fromJSON (builtins.readFile ./flake.lock);
-  inherit (lock.nodes.nixpkgs.locked) rev narHash;
-  fetchedNixpkgs = builtins.fetchTarball {
-    url = "https://github.com/NixOS/nixpkgs/archive/${rev}.tar.gz";
-    sha256 = narHash;
-  };
-in
-{ overlays ? [ ]
-, nixpkgs ? fetchedNixpkgs
-, ...
-}@attrs:
-import nixpkgs (
-  (builtins.removeAttrs attrs [ "overlays" "nixpkgs" ]) //
-  { overlays = [ bscOverlay ] ++ overlays; }
-)

doc/maintainers.md

@@ -1,30 +0,0 @@
-# Maintainers
-
-## Role of a maintainer
-The responsibilities of maintainers are quite lax, and similar in spirit to
-[nixpkgs' maintainers][1]:
-
-    The main responsibility of a maintainer is to keep the packages they
-    maintain in a functioning state, and keep up with updates. In order to do
-    that, they are empowered to make decisions over the packages they maintain.
-
-    That being said, the maintainer is not alone in proposing changes to the
-    packages. Anybody (both bots and humans) can send PRs to bump or tweak the
-    package.
-
-In practice, this means that when updating or proposing changes to a package,
-we will notify maintainers by mentioning them in Gitea so they can test changes
-and give feedback.
-
-Since we do bi-yearly release cycles, there is no expectation from maintainers
-to update packages at each upstream release. Nevertheless, on each release cycle
-we may request help from maintainers when updating or testing their packages.
-
-## Becoming a maintainer
-
-
-You'll have to add yourself in the `maintainers.nix` list; your username should
-match your `bsc.es` email. Then you can add yourself to the `meta.maintainers`
-of any package you are interested in maintaining.
-
-[1]: [https://github.com/NixOS/nixpkgs/tree/nixos-25.05/maintainers]

flake.lock

@@ -23,6 +23,26 @@
         "type": "github"
       }
     },
+    "bscpkgs": {
+      "inputs": {
+        "nixpkgs": [
+          "nixpkgs"
+        ]
+      },
+      "locked": {
+        "lastModified": 1749650500,
+        "narHash": "sha256-2MHfVPV6RA7qPSCtXh4+KK0F0UjN+J4z8//+n6NK7Xs=",
+        "ref": "refs/heads/master",
+        "rev": "9d1944c658929b6f98b3f3803fead4d1b91c4405",
+        "revCount": 961,
+        "type": "git",
+        "url": "https://git.sr.ht/~rodarima/bscpkgs"
+      },
+      "original": {
+        "type": "git",
+        "url": "https://git.sr.ht/~rodarima/bscpkgs"
+      }
+    },
     "darwin": {
       "inputs": {
         "nixpkgs": [
@@ -85,6 +105,7 @@
     "root": {
       "inputs": {
         "agenix": "agenix",
+        "bscpkgs": "bscpkgs",
         "nixpkgs": "nixpkgs"
       }
     },

flake.nix

@@ -3,22 +3,17 @@
     nixpkgs.url = "github:NixOS/nixpkgs/nixos-25.05";
     agenix.url = "github:ryantm/agenix";
     agenix.inputs.nixpkgs.follows = "nixpkgs";
+    bscpkgs.url = "git+https://git.sr.ht/~rodarima/bscpkgs";
+    bscpkgs.inputs.nixpkgs.follows = "nixpkgs";
   };
 
-  outputs = { self, nixpkgs, agenix, ... }:
+  outputs = { self, nixpkgs, agenix, bscpkgs, ... }:
 let
   mkConf = name: nixpkgs.lib.nixosSystem {
     system = "x86_64-linux";
-    specialArgs = { inherit nixpkgs agenix; theFlake = self; };
+    specialArgs = { inherit nixpkgs bscpkgs agenix; theFlake = self; };
     modules = [ "${self.outPath}/m/${name}/configuration.nix" ];
   };
-  # For now we only support x86
-  system = "x86_64-linux";
-  pkgs = import nixpkgs {
-    inherit system;
-    overlays = [ self.overlays.default ];
-    config.allowUnfree = true;
-  };
 in
   {
     nixosConfigurations = {
@@ -36,19 +31,9 @@ in
       weasel  = mkConf "weasel";
     };
 
-    bscOverlay = import ./overlay.nix;
-    overlays.default = self.bscOverlay;
-
-    # full nixpkgs with our overlay applied
-    legacyPackages.${system} = pkgs;
-
-    hydraJobs = self.legacyPackages.${system}.bsc.hydraJobs;
-
-    # propagate nixpkgs lib, so we can do bscpkgs.lib
-    lib = nixpkgs.lib // {
-      maintainers = nixpkgs.lib.maintainers // {
-        bsc = import ./pkgs/maintainers.nix;
-      };
+    packages.x86_64-linux = self.nixosConfigurations.hut.pkgs // {
+      bscpkgs = bscpkgs.packages.x86_64-linux;
+      nixpkgs = nixpkgs.legacyPackages.x86_64-linux;
     };
   };
 }

m/common/base.nix

@@ -11,7 +11,6 @@
     ./base/hw.nix
     ./base/net.nix
     ./base/nix.nix
-    ./base/sys-devices.nix
     ./base/ntp.nix
     ./base/rev.nix
     ./base/ssh.nix

m/common/base/nix.nix

@@ -1,8 +1,9 @@
-{ pkgs, nixpkgs, theFlake,  ... }:
+{ pkgs, nixpkgs, bscpkgs, theFlake,  ... }:
 
 {
   nixpkgs.overlays = [
-    (import ../../../overlay.nix)
+    bscpkgs.bscOverlay
+    (import ../../../pkgs/overlay.nix)
   ];
 
   nixpkgs.config.allowUnfree = true;

m/common/base/sys-devices.nix

@@ -1,9 +0,0 @@
-{
-  nix.settings.system-features = [ "sys-devices" ];
-
-  programs.nix-required-mounts.enable = true;
-  programs.nix-required-mounts.allowedPatterns.sys-devices.paths = [
-    "/sys/devices/system/cpu"
-    "/sys/devices/system/node"
-  ];
-}

m/fox/wireguard.nix

@@ -23,11 +23,11 @@
 
       peers = [
         # List of allowed peers.
-        {
+        { 
           name = "apex";
           publicKey = "VwhcN8vSOzdJEotQTpmPHBC52x3Hbv1lkFIyKubrnUA=";
           # List of IPs assigned to this peer within the tunnel subnet. Used to configure routing.
-          allowedIPs = [ "10.106.0.30/32" "10.0.40.7/32" ];
+          allowedIPs = [ "10.106.0.30/32" ];
         }
         {
           name = "raccoon";
@@ -40,7 +40,6 @@
 
   networking.hosts = {
     "10.106.0.30" = [ "apex" ];
-    "10.0.40.7" = [ "hut" ];
     "10.106.0.236" = [ "raccoon" ];
     "10.0.44.4" = [ "tent" ];
   };

overlay.nix

@@ -1,156 +0,0 @@
-final: /* Future last stage */
-prev:  /* Previous stage */
-
-with final.lib;
-
-let
-  callPackage = final.callPackage;
-
-  bscPkgs = {
-    amd-uprof = prev.callPackage ./pkgs/amd-uprof/default.nix { };
-    bench6 = callPackage ./pkgs/bench6/default.nix { };
-    bigotes = callPackage ./pkgs/bigotes/default.nix { };
-    clangOmpss2 = callPackage ./pkgs/llvm-ompss2/default.nix { };
-    clangOmpss2Nanos6 = callPackage ./pkgs/llvm-ompss2/default.nix { ompss2rt = final.nanos6; };
-    clangOmpss2Nodes = callPackage ./pkgs/llvm-ompss2/default.nix { ompss2rt = final.nodes; openmp = final.openmp; };
-    clangOmpss2NodesOmpv = callPackage ./pkgs/llvm-ompss2/default.nix { ompss2rt = final.nodes; openmp = final.openmpv; };
-    clangOmpss2Unwrapped = callPackage ./pkgs/llvm-ompss2/clang.nix { };
-    cudainfo = prev.callPackage ./pkgs/cudainfo/default.nix { };
-    #extrae = callPackage ./pkgs/extrae/default.nix { }; # Broken and outdated
-    gpi-2 = callPackage ./pkgs/gpi-2/default.nix { };
-    intelPackages_2023 = callPackage ./pkgs/intel-oneapi/2023.nix { };
-    jemallocNanos6 = callPackage ./pkgs/nanos6/jemalloc.nix { };
-    # FIXME: Extend this to all linuxPackages variants. Open problem, see:
-    # https://discourse.nixos.org/t/whats-the-right-way-to-make-a-custom-kernel-module-available/4636
-    linuxPackages = prev.linuxPackages.extend (_final: _prev: {
-      amd-uprof-driver = _prev.callPackage ./pkgs/amd-uprof/driver.nix { };
-    });
-    linuxPackages_latest = prev.linuxPackages_latest.extend(_final: _prev: {
-      amd-uprof-driver = _prev.callPackage ./pkgs/amd-uprof/driver.nix { };
-    });
-    lmbench = callPackage ./pkgs/lmbench/default.nix { };
-    mcxx = callPackage ./pkgs/mcxx/default.nix { };
-    meteocat-exporter = prev.callPackage ./pkgs/meteocat-exporter/default.nix { };
-    mpi = final.mpich; # Set MPICH as default
-    mpich = callPackage ./pkgs/mpich/default.nix { mpich = prev.mpich; };
-    nanos6 = callPackage ./pkgs/nanos6/default.nix { };
-    nanos6Debug = final.nanos6.override { enableDebug = true; };
-    nixtools = callPackage ./pkgs/nixtools/default.nix { };
-    # Broken because of pkgsStatic.libcap
-    # See: https://github.com/NixOS/nixpkgs/pull/268791
-    #nix-wrap = callPackage ./pkgs/nix-wrap/default.nix { };
-    nodes = callPackage ./pkgs/nodes/default.nix { };
-    nosv = callPackage ./pkgs/nosv/default.nix { };
-    openmp = callPackage ./pkgs/llvm-ompss2/openmp.nix { monorepoSrc = final.clangOmpss2Unwrapped.src; version = final.clangOmpss2Unwrapped.version; };
-    openmpv = final.openmp.override { enableNosv = true; enableOvni = true; };
-    osumb = callPackage ./pkgs/osu/default.nix { };
-    ovni = callPackage ./pkgs/ovni/default.nix { };
-    ovniGit = final.ovni.override { useGit = true; };
-    paraverKernel = callPackage ./pkgs/paraver/kernel.nix { };
-    prometheus-slurm-exporter = prev.callPackage ./pkgs/slurm-exporter/default.nix { };
-    #pscom = callPackage ./pkgs/parastation/pscom.nix { }; # Unmaintaned
-    #psmpi = callPackage ./pkgs/parastation/psmpi.nix { }; # Unmaintaned
-    sonar = callPackage ./pkgs/sonar/default.nix { };
-    stdenvClangOmpss2 = final.stdenv.override { cc = final.clangOmpss2; allowedRequisites = null; };
-    stdenvClangOmpss2Nanos6 = final.stdenv.override { cc = final.clangOmpss2Nanos6; allowedRequisites = null; };
-    stdenvClangOmpss2Nodes = final.stdenv.override { cc = final.clangOmpss2Nodes; allowedRequisites = null; };
-    stdenvClangOmpss2NodesOmpv = final.stdenv.override { cc = final.clangOmpss2NodesOmpv; allowedRequisites = null; };
-    tagaspi = callPackage ./pkgs/tagaspi/default.nix { };
-    tampi = callPackage ./pkgs/tampi/default.nix { };
-    upc-qaire-exporter = prev.callPackage ./pkgs/upc-qaire-exporter/default.nix { };
-    wxparaver = callPackage ./pkgs/paraver/default.nix { };
-  };
-
-  tests = rec {
-    hwloc = callPackage ./test/bugs/hwloc.nix { };
-    #sigsegv = callPackage ./test/reproducers/sigsegv.nix { };
-    hello-c = callPackage ./test/compilers/hello-c.nix { };
-    hello-cpp = callPackage ./test/compilers/hello-cpp.nix { };
-    lto = callPackage ./test/compilers/lto.nix { };
-    asan = callPackage ./test/compilers/asan.nix { };
-    intel2023-icx-c   = hello-c.override   { stdenv = final.intelPackages_2023.stdenv; };
-    intel2023-icc-c   = hello-c.override   { stdenv = final.intelPackages_2023.stdenv-icc; };
-    intel2023-icx-cpp = hello-cpp.override { stdenv = final.intelPackages_2023.stdenv; };
-    intel2023-icc-cpp = hello-cpp.override { stdenv = final.intelPackages_2023.stdenv-icc; };
-    intel2023-ifort   = callPackage ./test/compilers/hello-f.nix {
-      stdenv = final.intelPackages_2023.stdenv-ifort;
-    };
-    clangOmpss2-lto   = lto.override       { stdenv = final.stdenvClangOmpss2Nanos6; };
-    clangOmpss2-asan  = asan.override      { stdenv = final.stdenvClangOmpss2Nanos6; };
-    clangOmpss2-task  = callPackage ./test/compilers/ompss2.nix {
-      stdenv = final.stdenvClangOmpss2Nanos6;
-    };
-    clangNodes-task = callPackage ./test/compilers/ompss2.nix {
-      stdenv = final.stdenvClangOmpss2Nodes;
-    };
-    clangNosvOpenmp-task = callPackage ./test/compilers/clang-openmp.nix {
-      stdenv = final.stdenvClangOmpss2Nodes;
-    };
-    clangNosvOmpv-nosv = callPackage ./test/compilers/clang-openmp-nosv.nix {
-      stdenv = final.stdenvClangOmpss2NodesOmpv;
-    };
-    clangNosvOmpv-ld = callPackage ./test/compilers/clang-openmp-ld.nix {
-      stdenv = final.stdenvClangOmpss2NodesOmpv;
-    };
-  };
-
-  # For now, only build toplevel packages in CI/Hydra
-  pkgsTopLevel = filterAttrs (_: isDerivation) bscPkgs;
-
-  # Native build in that platform doesn't imply cross build works
-  canCrossCompile = platform: pkg:
-    (isDerivation pkg) &&
-    # Must be defined explicitly
-    (pkg.meta.cross or false) &&
-    (meta.availableOn platform pkg);
-
-  # For now only RISC-V
-  crossSet = { riscv64 = final.pkgsCross.riscv64.bsc.pkgsTopLevel; };
-
-  buildList = name: paths:
-    final.runCommandLocal name { } ''
-      printf '%s\n' ${toString paths} | tee $out
-    '';
-
-  buildList' = name: paths:
-    final.runCommandLocal name { } ''
-      deps="${toString paths}"
-      cat $deps
-      printf '%s\n' $deps >$out
-    '';
-
-  pkgsList = buildList "ci-pkgs" (builtins.attrValues pkgsTopLevel);
-  testsList = buildList "ci-tests" (collect isDerivation tests);
-  allList = buildList' "ci-all" [ pkgsList testsList ];
-  # For now only RISC-V
-  crossList = buildList "ci-cross"
-    (filter
-      (canCrossCompile final.pkgsCross.riscv64.stdenv.hostPlatform)
-        (builtins.attrValues crossSet.riscv64));
-
-in bscPkgs // {
-
-  lib = prev.lib // {
-    maintainers = prev.lib.maintainers // {
-      bsc = import ./pkgs/maintainers.nix;
-    };
-  };
-
-  # Prevent accidental usage of bsc-ci attribute
-  bsc-ci = throw "the bsc-ci attribute is deprecated, use bsc.ci";
-
-  # Internal for our CI tests
-  bsc = {
-    # CI targets for nix build
-    ci = { pkgs = pkgsList; tests = testsList; all = allList; cross = crossList; };
-
-    # Direct access to package sets
-    tests = tests;
-    pkgs = bscPkgs;
-    pkgsTopLevel = pkgsTopLevel;
-    cross = crossSet;
-
-    # Hydra uses attribute sets of pkgs
-    hydraJobs = { tests = tests; pkgs = pkgsTopLevel; cross = crossSet; };
-  };
-}

pkgs/amd-uprof/default.nix

@@ -86,13 +86,4 @@ in
       patchelf --add-needed libnuma.so $out/bin/AMDuProfPcm
       set +x
     '';
-
-    meta = {
-      description = "Performance analysis tool-suite for x86 based applications";
-      homepage = "https://www.amd.com/es/developer/uprof.html";
-      platforms = lib.platforms.linux;
-      license = lib.licenses.unfree;
-      maintainers = with lib.maintainers.bsc; [ rarias varcila ];
-    };
-
   }

pkgs/amd-uprof/driver.nix

@@ -29,7 +29,5 @@ in stdenv.mkDerivation {
     description = "AMD Power Profiler Driver";
     homepage = "https://www.amd.com/es/developer/uprof.html";
     platforms = lib.platforms.linux;
-    license = lib.licenses.unfree;
-    maintainers = with lib.maintainers.bsc; [ rarias varcila ];
   };
 }

pkgs/bench6/default.nix

@@ -1,70 +0,0 @@
-{
-  stdenv
-, lib
-, bigotes
-, cmake
-, clangOmpss2
-, openmp
-, openmpv
-, nanos6
-, nodes
-, nosv
-, mpi
-, tampi
-, openblas
-, ovni
-, gitBranch ? "master"
-, gitURL ? "ssh://git@bscpm04.bsc.es/rarias/bench6.git"
-, gitCommit ? "bf29a53113737c3aa74d2fe3d55f59868faea7b4"
-}:
-
-stdenv.mkDerivation rec {
-  pname = "bench6";
-  version = "${src.shortRev}";
-
-  src = builtins.fetchGit {
-    url = gitURL;
-    ref = gitBranch;
-    rev = gitCommit;
-  };
-
-  nativeBuildInputs = [
-    cmake
-    clangOmpss2
-  ];
-
-  buildInputs = [
-    bigotes
-    openmp
-    openmpv
-    nanos6
-    nodes
-    nosv
-    mpi
-    tampi
-    openblas
-    openblas.dev
-    ovni
-  ];
-
-  env = {
-    NANOS6_HOME = nanos6;
-    NODES_HOME = nodes;
-    NOSV_HOME = nosv;
-  };
-
-  cmakeFlags = [
-    "-DCMAKE_C_COMPILER=clang"
-    "-DCMAKE_CXX_COMPILER=clang++"
-  ];
-  hardeningDisable = [ "all" ];
-  dontStrip = true;
-
-  meta = {
-    homepage = "https://gitlab.pm.bsc.es/rarias/bench6";
-    description = "Set of micro-benchmarks for OmpSs-2 and several mini-apps";
-    maintainers = with lib.maintainers.bsc; [ rarias ];
-    platforms = lib.platforms.linux;
-    license = lib.licenses.gpl3Plus;
-  };
-}

pkgs/bigotes/default.nix

@@ -1,26 +0,0 @@
-{
-  stdenv
-, lib
-, fetchFromGitHub
-, cmake
-}:
-
-stdenv.mkDerivation {
-  pname = "bigotes";
-  version = "9dce13";
-  src = fetchFromGitHub {
-    owner = "rodarima";
-    repo = "bigotes";
-    rev = "9dce13446a8da30bea552d569d260d54e0188518";
-    sha256 = "sha256-ktxM3pXiL8YXSK+/IKWYadijhYXqGoLY6adLk36iigE=";
-  };
-  nativeBuildInputs = [ cmake ];
-
-  meta = {
-    homepage = "https://github.com/rodarima/bigotes";
-    description = "Versatile benchmark tool";
-    maintainers = with lib.maintainers.bsc; [ rarias ];
-    platforms = lib.platforms.linux;
-    license = lib.licenses.gpl3Plus;
-  };
-}

pkgs/extrae/PTR.patch

@@ -1,13 +0,0 @@
-diff --git a/src/merger/common/bfd_manager.c b/src/merger/common/bfd_manager.c
-index 5f9dacf9..5231e3eb 100644
---- a/src/merger/common/bfd_manager.c
-+++ b/src/merger/common/bfd_manager.c
-@@ -225,7 +225,7 @@ asymbol **BFDmanager_getDefaultSymbols (void)
-  *
-  * @return No return value.
-  */
--static void BFDmanager_findAddressInSection (bfd * abfd, asection * section, PTR data)
-+static void BFDmanager_findAddressInSection (bfd * abfd, asection * section, void * data)
- {
- #if HAVE_BFD_GET_SECTION_SIZE || HAVE_BFD_SECTION_SIZE || HAVE_BFD_GET_SECTION_SIZE_BEFORE_RELOC
- 	bfd_size_type size;

pkgs/extrae/default.nix

@@ -1,123 +0,0 @@
-{ stdenv
-, lib
-, fetchFromGitHub
-, boost
-, libdwarf
-, libelf
-, libxml2
-, libunwind
-, papi
-, binutils-unwrapped
-, libiberty
-, gfortran
-, xml2
-, which
-, libbfd
-, mpi ? null
-, cuda ? null
-, llvmPackages
-, autoreconfHook
-#, python3Packages
-, installShellFiles
-, symlinkJoin
-, enablePapi ? stdenv.hostPlatform == stdenv.buildPlatform # Disabled when cross-compiling
-}:
-
-let
-  libdwarfBundle = symlinkJoin {
-    name = "libdwarfBundle";
-    paths = [ libdwarf.dev libdwarf.lib libdwarf.out ];
-  };
-in
-
-stdenv.mkDerivation rec {
-  pname = "extrae";
-  version = "4.0.1";
-  src = fetchFromGitHub {
-    owner = "bsc-performance-tools";
-    repo = "extrae";
-    rev = "${version}";
-    sha256 = "SlMYxNQXJ0Xg90HmpnotUR3tEPVVBXhk1NtEBJwGBR4=";
-  };
-
-  patches = [
-    # FIXME: Waiting for German to merge this patch. Still not in master, merged
-    # on 2023-03-01 in devel branch (after 3 years), see:
-    # https://github.com/bsc-performance-tools/extrae/pull/45
-    ./use-command.patch
-    # https://github.com/bsc-performance-tools/extrae/issues/71
-    ./PTR.patch
-  ];
-
-  enableParallelBuilding = true;
-  hardeningDisable = [ "all" ];
-
-  nativeBuildInputs = [ installShellFiles ];
-
-  buildInputs = [
-    autoreconfHook
-    gfortran
-    libunwind
-    binutils-unwrapped
-    boost
-    boost.dev
-    libiberty
-    mpi
-    xml2
-    which
-    libxml2.dev
-    libbfd
-    #python3Packages.sphinx
-  ]
-  ++ lib.optional stdenv.cc.isClang llvmPackages.openmp;
-    
-  preConfigure = ''
-    configureFlagsArray=(
-      --enable-posix-clock
-      --with-binutils="${binutils-unwrapped} ${libiberty}"
-      --with-dwarf=${libdwarfBundle}
-      --with-elf=${libelf}
-      --with-boost=${boost.dev}
-      --enable-instrument-io
-      --enable-instrument-dynamic-memory
-      --without-memkind
-      --enable-merge-in-trace
-      --disable-online
-      --without-opencl
-      --enable-pebs-sampling
-      --enable-sampling
-      --with-unwind=${libunwind.dev}
-      --with-xml-prefix=${libxml2.dev}
-      ${lib.optionalString enablePapi "--with-papi=${papi}"}
-      ${if (mpi != null) then ''--with-mpi=${mpi}''
-        else ''--without-mpi''}
-      --without-dyninst)
-  '';
-
-  # Install the manuals only by hand, as we don't want to pull the complete
-  # LaTeX world
-
-  # FIXME: sphinx is broken
-  #postBuild = ''
-  #  make -C docs man
-  #'';
-  #
-  #postInstall = ''
-  #  installManPage docs/builds/man/*/*
-  #'';
-
-#  ++ (
-#    if (openmp)
-#    then [ "--enable-openmp" ]
-#    else []
-#  );
-
-  meta = {
-    homepage = "https://github.com/bsc-performance-tools/extrae";
-    description = "Instrumentation framework to generate execution traces of the most used parallel runtimes";
-    maintainers = [ ];
-    broken = true;
-    platforms = lib.platforms.linux;
-    license = lib.licenses.lgpl21Plus;
-  };
-}

pkgs/extrae/use-command.patch

@@ -1,24 +0,0 @@
-diff --git a/substitute b/substitute
-index d5615606..82ca91a5 100755
---- a/substitute
-+++ b/substitute
-@@ -16,7 +16,7 @@ UNAME=`uname`
- if [ "${UNAME}" = "Darwin" -o "${UNAME}" = "AIX" ] ; then
- 	TMPFILE=substitute-$$
- 	${SED} "s|${KEY}|${VALUE}|g" < ${FILE} >${TMPFILE}
--	/bin/mv -f ${TMPFILE} ${FILE}
-+	command mv -f ${TMPFILE} ${FILE}
- else
- 	${SED} "s|${KEY}|${VALUE}|g" -i ${FILE}
- fi
-diff --git a/substitute-all b/substitute-all
-index 48c6b76a..eda7a0f2 100755
---- a/substitute-all
-+++ b/substitute-all
-@@ -23,5 +23,5 @@ fi
- 
- echo "Applying modification in ${PATHTOCHANGE} - Key = ${KEY} for value = ${VALUE}"
- 
--/usr/bin/find ${PATHTOCHANGE} -type f -exec ${SCRIPT_LOCATION} "${SED}" "${KEY}" "${VALUE}" {} \;
-+command find ${PATHTOCHANGE} -type f -exec ${SCRIPT_LOCATION} "${SED}" "${KEY}" "${VALUE}" {} \;
- 

pkgs/gpi-2/default.nix

@@ -1,64 +0,0 @@
-{
-  stdenv
-, lib
-, fetchurl
-, symlinkJoin
-, slurm
-, rdma-core
-, autoconf
-, automake
-, libtool
-, mpi
-, rsync
-, gfortran
-}:
-
-let
-  rdma-core-all = symlinkJoin {
-    name ="rdma-core-all";
-    paths = [ rdma-core.dev rdma-core.out ];
-  };
-  mpiAll = symlinkJoin {
-    name = "mpi-all";
-    paths = [ mpi.all ];
-  };
-in
-
-stdenv.mkDerivation rec {
-  pname = "GPI-2";
-  version = "tagaspi-2021.11";
-
-  src = fetchurl {
-    url = "https://pm.bsc.es/gitlab/interoperability/extern/GPI-2/-/archive/${version}/GPI-2-${version}.tar.gz";
-    hash = "sha256-eY2wpyTpnOXRoAcYoAP82Jq9Q7p5WwDpMj+f1vEX5zw=";
-  };
-
-  enableParallelBuilding = true;
-
-  patches = [ ./rdma-core.patch ./max-mem.patch ];
-
-  preConfigure = ''
-    patchShebangs autogen.sh
-    ./autogen.sh
-  '';
-
-  configureFlags = [
-    "--with-infiniband=${rdma-core-all}"
-    "--with-mpi=${mpiAll}"
-    "--with-slurm"
-    "CFLAGS=-fPIC"
-    "CXXFLAGS=-fPIC"
-  ];
-
-  buildInputs = [ slurm mpiAll rdma-core-all autoconf automake libtool rsync gfortran ];
-
-  hardeningDisable = [ "all" ];
-
-  meta = {
-    homepage = "https://pm.bsc.es/gitlab/interoperability/extern/GPI-2";
-    description = "GPI-2 extended for supporting Task-Aware GASPI (TAGASPI) library";
-    maintainers = with lib.maintainers.bsc; [ rarias ];
-    platforms = lib.platforms.linux;
-    license = lib.licenses.gpl3Plus;
-  };
-}

pkgs/gpi-2/max-mem.patch

@@ -1,10 +0,0 @@
---- a/tests/tests/segments/max_mem.c	2025-09-12 13:30:53.449353591 +0200
-+++ b/tests/tests/segments/max_mem.c	2025-09-12 13:33:49.750352401 +0200
-@@ -1,5 +1,7 @@
- #include <test_utils.h>
- 
-+gaspi_size_t gaspi_get_system_mem (void);
-+
- /* Test allocates 45% of system memory and creates a segment that
-    large or if several ranks per node exist, divided among that
-    number */

pkgs/gpi-2/rdma-core.patch

@@ -1,12 +0,0 @@
---- a/src/devices/ib/GPI2_IB.h	2025-09-12 13:25:31.564181121 +0200
-+++ b/src/devices/ib/GPI2_IB.h	2025-09-12 13:24:49.105422150 +0200
-@@ -26,6 +26,9 @@ along with GPI-2. If not, see <http://ww
- 
- #include "GPI2_Dev.h"
- 
-+/* Missing prototype as driver.h is now private */
-+int ibv_read_sysfs_file(const char *dir, const char *file, char *buf, size_t size);
-+
- #define GASPI_GID_INDEX   (0)
- #define PORT_LINK_UP      (5)
- #define MAX_INLINE_BYTES  (128)

pkgs/intel-oneapi/2023.nix

@@ -1,511 +0,0 @@
-{ stdenv
-, fetchurl
-, lib
-, dpkg
-, rsync
-, libffi_3_3
-, libelf
-, libxml2
-, hwloc
-, zlib
-, autoPatchelfHook
-, libfabric
-, gcc13
-, wrapCCWith
-}:
-
-# The distribution of intel packages is a mess. We are doing the installation
-# based on the .deb metapackage "intel-hpckit", and follow de dependencies,
-# which have mismatching versions.
-
-# Bruno Bzeznik (bzizou) went through the madness of using their .sh installer,
-# pulling all the X dependencies here:
-# https://github.com/Gricad/nur-packages/blob/4b67c8ad0ce1baa1d2f53ba41ae5bca8e00a9a63/pkgs/intel/oneapi.nix
-
-# But this is an attempt to install the packages from the APT repo
-
-let
-
-  meta = {
-    description = "Intel oneapi hpckit package component";
-    homepage = "https://www.intel.com/content/www/us/en/developer/tools/oneapi/hpc-toolkit-download.html";
-    license = lib.licenses.unfree;
-    maintainers = with lib.maintainers.bsc; [ abonerib ];
-  };
-
-  gcc = gcc13;
-
-  v = {
-    hpckit   = "2023.1.0";
-    compiler = "2023.1.0";
-    tbb      = "2021.9.0";
-    mpi      = "2021.9.0";
-  };
-
-  aptPackageIndex = stdenv.mkDerivation {
-    name = "intel-oneapi-packages";
-    srcs = [
-      # Run update.sh to update the package lists
-      ./amd64-packages ./all-packages
-    ];
-    phases = [ "installPhase" ];
-    installPhase = ''
-      awk -F': ' '\
-        BEGIN   { print "[ {" } \
-        NR>1 && /^Package: / { print "} {"; } \
-        /: /    { printf "%s = \"%s\";\n", $1, $2 } \
-        END     { print "} ]" }' $srcs > $out
-    '';
-  };
-
-  aptPackages = import aptPackageIndex;
-
-  apthost = "https://apt.repos.intel.com/oneapi/";
-
-  getSum = pkgList: name:
-  let
-    matches = lib.filter (x: name == x.Package) pkgList;
-    #n = lib.length matches;
-    #match = builtins.trace (name + " -- ${builtins.toString n}") (lib.elemAt matches 0);
-    match = lib.elemAt matches 0;
-  in
-    match.SHA256;
-
-  getUrl = pkgList: name:
-  let
-    matches = lib.filter (x: name == x.Package) pkgList;
-    #match = assert lib.length matches == 1; lib.elemAt matches 0;
-    n = lib.length matches;
-    match =
-      #builtins.trace (name + " -- n=${builtins.toString n}")
-      (lib.elemAt matches 0);
-  in
-    apthost + match.Filename;
-
-  uncompressDebs = debs: name: stdenv.mkDerivation {
-    name = name;
-    srcs = debs;
-    nativeBuildInputs = [ dpkg ];
-    phases = [ "installPhase" ];
-    installPhase = ''
-      mkdir -p $out
-      for src in $srcs; do
-        echo "unpacking $src"
-        dpkg -x $src $out
-      done
-    '';
-
-    inherit meta;
-  };
-
-  joinDebs = name: names:
-  let
-    urls = builtins.map (x: getUrl aptPackages x) names;
-    sums = builtins.map (x: getSum aptPackages x) names;
-    getsrc = url: sha256: builtins.fetchurl { inherit url sha256; };
-    debs = lib.zipListsWith getsrc urls sums;
-  in
-    uncompressDebs debs "${name}-source";
-
-
-  intel-mpi = stdenv.mkDerivation rec {
-    version = v.mpi;
-    pname = "intel-mpi";
-
-    src = joinDebs pname [
-      "intel-oneapi-mpi-devel-${version}"
-      "intel-oneapi-mpi-${version}"
-    ];
-
-    nativeBuildInputs = [
-      autoPatchelfHook
-      rsync
-    ];
-
-    buildInputs = [
-      libfabric
-      zlib
-      stdenv.cc.cc.lib
-    ];
-
-    phases = [ "installPhase" "fixupPhase" ];
-    dontStrip = true;
-    installPhase = ''
-      mkdir -p $out/{bin,etc,lib,include}
-      mkdir -p $out/share/man
-
-      cd $src
-
-      # MPI
-      pushd opt/intel/oneapi/mpi/${version}
-        rsync -a man/ $out/share/man/
-        rsync -a etc/ $out/etc/
-        rsync -a include/ $out/include/
-        cp -a lib/lib* $out/lib/
-        # Copy the actual libmpi.so from release
-        cp -a lib/release/lib* $out/lib
-        # Broken due missing libze_loader.so.1
-        rsync -a --exclude IMB-MPI1-GPU bin/ $out/bin/
-      popd
-    '';
-    preFixup = ''
-      for i in $out/bin/mpi* ; do
-        echo "Fixing paths in $i"
-        sed -i "s:I_MPI_SUBSTITUTE_INSTALLDIR:$out:g" "$i"
-      done
-    '';
-
-    inherit meta;
-  };
-
-  intel-tbb = stdenv.mkDerivation rec {
-    version = v.tbb;
-    pname = "intel-tbb";
-    src = joinDebs pname [
-      "intel-oneapi-tbb-${version}"
-      "intel-oneapi-tbb-common-${version}"
-    ];
-
-    buildInputs = [
-      intel-mpi
-      libffi_3_3
-      libelf
-      libxml2
-      hwloc
-      stdenv.cc.cc.lib
-    ];
-
-    nativeBuildInputs = [
-      autoPatchelfHook
-      rsync
-    ];
-    phases = [ "installPhase" "fixupPhase" ];
-    dontStrip = true;
-
-    autoPatchelfIgnoreMissingDeps = [ "libhwloc.so.5" ];
-
-    installPhase = ''
-      mkdir -p $out/lib
-
-      cd $src
-
-      pushd opt/intel/oneapi/tbb/${version}
-        # Libraries
-        rsync -a lib/intel64/gcc4.8/ $out/lib/
-      popd
-    '';
-
-    inherit meta;
-  };
-
-  intel-compiler-shared = stdenv.mkDerivation rec {
-    version = v.compiler;
-    pname = "intel-compiler-shared";
-    src = joinDebs pname [
-      "intel-oneapi-compiler-shared-${version}"
-      "intel-oneapi-compiler-shared-common-${version}"
-      "intel-oneapi-compiler-shared-runtime-${version}"
-    ];
-
-    buildInputs = [
-      intel-mpi
-      intel-tbb
-      libffi_3_3
-      libelf
-      libxml2
-      zlib
-      hwloc
-      stdenv.cc.cc.lib
-    ];
-
-    nativeBuildInputs = [
-      autoPatchelfHook
-      rsync
-    ];
-    phases = [ "installPhase" "fixupPhase" ];
-    dontStrip = true;
-
-    autoPatchelfIgnoreMissingDeps = [ "libsycl.so.6" ];
-
-    installPhase = ''
-      mkdir -p $out/{bin,lib,include}
-      mkdir -p $out/share/man
-
-      cd $src
-
-      # Compiler
-      pushd opt/intel/oneapi/compiler/${version}
-        pushd linux
-          # Binaries
-          rsync -a bin/ $out/bin/
-          rsync -a --exclude libcilkrts.so.5 bin/intel64/ $out/bin/
-
-          # Libraries
-          rsync -a lib/ $out/lib/
-          rsync -a lib/x64/ $out/lib/
-          rsync -a compiler/lib/intel64_lin/ $out/lib/
-          chmod +w $out/lib
-          cp bin/intel64/libcilkrts.so.5 $out/lib/
-          ln -s $out/lib/libcilkrts.so.5 $out/lib/libcilkrts.so
-
-          # Headers
-          rsync -a compiler/include/ $out/include/
-        popd
-      popd
-    '';
-
-    inherit meta;
-  };
-
-
-  intel-compiler-fortran = stdenv.mkDerivation rec {
-    version = v.compiler;
-    pname = "intel-fortran";
-    src = joinDebs pname [
-      "intel-oneapi-compiler-fortran-${version}"
-      "intel-oneapi-compiler-fortran-common-${version}"
-      "intel-oneapi-compiler-fortran-runtime-${version}"
-
-      "intel-oneapi-compiler-dpcpp-cpp-classic-fortran-shared-runtime-${version}"
-      #"intel-oneapi-compiler-dpcpp-cpp-and-cpp-classic-${version}"
-      #"intel-oneapi-compiler-dpcpp-cpp-and-cpp-classic-runtime-${version}"
-    ];
-
-    langFortran = true;
-
-    buildInputs = [
-      intel-mpi
-      intel-compiler-shared
-      libffi_3_3
-      libelf
-      libxml2
-      hwloc
-      stdenv.cc.cc.lib
-    ];
-
-    nativeBuildInputs = [
-      autoPatchelfHook
-      rsync
-    ];
-
-    phases = [ "installPhase" "fixupPhase" ];
-
-    dontStrip = true;
-
-    installPhase = ''
-      mkdir -p $out/{bin,lib,include}
-      mkdir -p $out/share/man
-
-      cd $src
-
-      # Compiler
-      pushd opt/intel/oneapi/compiler/${version}
-        pushd linux
-          # Binaries
-          rsync -a bin/ $out/bin/
-          rsync -a bin/intel64/ $out/bin/
-
-          # Libraries
-          rsync -a lib/ $out/lib/
-          rsync -a compiler/lib/intel64_lin/ $out/lib/
-
-          # Headers
-          rsync -a compiler/include/ $out/include/
-        popd
-
-        # Manuals
-        rsync -a documentation/en/man/common/ $out/share/man/
-
-        # Fix lib_lin
-        ln -s $out/lib $out/lib_lin
-      popd
-    '';
-
-    inherit meta;
-  };
-
-  intel-compiler = stdenv.mkDerivation rec {
-    version = v.compiler;
-    pname = "intel-compiler";
-    src = joinDebs pname [
-      # C/C++
-      "intel-oneapi-dpcpp-cpp-${version}"
-      "intel-oneapi-compiler-dpcpp-cpp-${version}"
-      "intel-oneapi-compiler-dpcpp-cpp-common-${version}"
-      "intel-oneapi-compiler-dpcpp-cpp-runtime-${version}"
-      "intel-oneapi-compiler-dpcpp-cpp-and-cpp-classic-${version}"
-      "intel-oneapi-compiler-dpcpp-cpp-and-cpp-classic-common-${version}"
-      "intel-oneapi-compiler-dpcpp-cpp-and-cpp-classic-runtime-${version}"
-      "intel-oneapi-compiler-dpcpp-cpp-classic-fortran-shared-runtime-${version}"
-    ];
-    dontCheckForBrokenSymlinks = true;
-    # From https://aur.archlinux.org/packages/intel-oneapi-compiler:
-    # - intel-oneapi-compiler-cpp-eclipse-cfg-2023.0.0-25370_all.deb
-    # + intel-oneapi-compiler-dpcpp-cpp-2023.0.0-2023.0.0-25370_amd64.deb
-    # x intel-oneapi-compiler-dpcpp-cpp-and-cpp-classic-2023.0.0-2023.0.0-25370_amd64.deb (empty)
-    # + intel-oneapi-compiler-dpcpp-cpp-and-cpp-classic-2023.0.0-25370_amd64.deb
-    # + intel-oneapi-compiler-dpcpp-cpp-and-cpp-classic-common-2023.0.0-2023.0.0-25370_all.deb
-    # + intel-oneapi-compiler-dpcpp-cpp-and-cpp-classic-runtime-2023.0.0-2023.0.0-25370_amd64.deb
-    # + intel-oneapi-compiler-dpcpp-cpp-classic-fortran-shared-runtime-2023.0.0-2023.0.0-25370_amd64.deb
-    # + intel-oneapi-compiler-dpcpp-cpp-common-2023.0.0-2023.0.0-25370_all.deb
-    # + intel-oneapi-compiler-dpcpp-cpp-runtime-2023.0.0-2023.0.0-25370_amd64.deb
-    # - intel-oneapi-compiler-dpcpp-eclipse-cfg-2023.0.0-25370_all.deb
-    # - intel-oneapi-compiler-fortran-2023.0.0-2023.0.0-25370_amd64.deb
-    # - intel-oneapi-compiler-fortran-common-2023.0.0-2023.0.0-25370_all.deb
-    # - intel-oneapi-compiler-fortran-runtime-2023.0.0-2023.0.0-25370_amd64.deb
-    # - intel-oneapi-compiler-fortran-runtime-2023.0.0-25370_amd64.deb
-    # - intel-oneapi-compiler-shared-2023.0.0-2023.0.0-25370_amd64.deb
-    # - intel-oneapi-compiler-shared-common-2023.0.0-2023.0.0-25370_all.deb
-    # - intel-oneapi-compiler-shared-runtime-2023.0.0-2023.0.0-25370_amd64.deb
-    # - intel-oneapi-dpcpp-cpp-2023.0.0-2023.0.0-25370_amd64.deb
-    # - intel-oneapi-openmp-2023.0.0-2023.0.0-25370_amd64.deb
-    # - intel-oneapi-openmp-common-2023.0.0-2023.0.0-25370_all.deb
-
-    buildInputs = [
-      intel-compiler-shared
-      libffi_3_3
-      libelf
-      libxml2
-      hwloc
-      stdenv.cc.cc.lib
-    ];
-
-    nativeBuildInputs = [
-      autoPatchelfHook
-      rsync
-    ];
-    autoPatchelfIgnoreMissingDeps = [ "libtbb.so.12" "libtbbmalloc.so.2" "libze_loader.so.1" ];
-
-    phases = [ "installPhase" "fixupPhase" ];
-
-    dontStrip = true;
-
-    installPhase = ''
-      mkdir -p $out/{bin,lib}
-      mkdir -p $out/share/man
-
-      cd $src
-
-      # Compiler
-      pushd opt/intel/oneapi/compiler/${version}
-        pushd linux
-          # Binaries
-          rsync -a bin/ $out/bin/
-          rsync -a bin-llvm/ $out/bin/
-          rsync -a bin/intel64/ $out/bin/
-
-          # Libraries
-          rsync -a --exclude oclfpga lib/ $out/lib/
-          rsync -a compiler/lib/intel64_lin/ $out/lib/
-
-          # Headers
-          rsync -a compiler/include/ $out/include/ # Intrinsics for icc
-          rsync -a include/ $out/include/
-          chmod +w $out/include
-          ln -s $out/lib/clang/16.0.0/include/ $out/include/icx # For icx
-        popd
-
-        # Manuals
-        rsync -a documentation/en/man/common/ $out/share/man/
-      popd
-    '';
-
-    inherit meta;
-  };
-
-  wrapIntel = { cc, mygcc, extraBuild ? "", extraInstall ? "" }:
-    let
-      targetConfig = stdenv.targetPlatform.config;
-    in (wrapCCWith {
-      cc = cc;
-      extraBuildCommands = ''
-        echo "-isystem ${cc}/include" >> $out/nix-support/cc-cflags
-        echo "-isystem ${cc}/include/intel64" >> $out/nix-support/cc-cflags
-
-        echo "-L${mygcc.cc}/lib/gcc/${targetConfig}/${mygcc.version}" >> $out/nix-support/cc-ldflags
-        echo "-L${mygcc.cc.lib}/lib" >> $out/nix-support/cc-ldflags
-        echo "-L${intel-compiler-shared}/lib" >> $out/nix-support/cc-ldflags
-        echo "-L${cc}/lib" >> $out/nix-support/cc-ldflags
-
-        # Need the gcc in the path
-        # FIXME: We should find a better way to modify the PATH instead of using
-        # this ugly hack. See https://jungle.bsc.es/git/rarias/bscpkgs/issues/9
-        echo 'path_backup="${mygcc}/bin:$path_backup"' >> $out/nix-support/cc-wrapper-hook
-
-        # Disable hardening by default
-        echo "" > $out/nix-support/add-hardening.sh
-      '' + extraBuild;
-    }).overrideAttrs (old: {
-      installPhase = old.installPhase + extraInstall;
-    });
-
-  icx-wrapper = wrapIntel rec {
-    cc = intel-compiler;
-    mygcc = gcc;
-    extraBuild = ''
-      wrap icx  $wrapper $ccPath/icx
-      wrap icpx $wrapper $ccPath/icpx
-      echo "-isystem ${cc}/include/icx" >> $out/nix-support/cc-cflags
-      echo "--gcc-toolchain=${mygcc.cc}" >> $out/nix-support/cc-cflags
-    '';
-    extraInstall = ''
-      export named_cc="icx"
-      export named_cxx="icpx"
-    '';
-  };
-
-  # Legacy
-  icc-wrapper = wrapIntel rec {
-    cc = intel-compiler;
-    # Intel icc classic compiler tries to behave like the gcc found in $PATH.
-    # EVEN if it doesn't support some of the features. See:
-    # https://community.intel.com/t5/Intel-C-Compiler/builtin-shuffle-GCC-compatibility-and-has-builtin/td-p/1143619
-    mygcc = gcc;
-    extraBuild = ''
-      wrap icc  $wrapper $ccPath/icc
-      wrap icpc $wrapper $ccPath/icpc
-      echo "-isystem ${cc}/include/icc" >> $out/nix-support/cc-cflags
-    '';
-    extraInstall = ''
-      export named_cc="icc"
-      export named_cxx="icpc"
-    '';
-  };
-
-  ifort-wrapper = wrapIntel rec {
-    cc = intel-compiler-fortran;
-    mygcc = gcc;
-    extraBuild = ''
-      wrap ifort  $wrapper $ccPath/ifort
-    '';
-    extraInstall = ''
-      export named_fc="ifort"
-    '';
-  };
-
-  stdenv-icc = stdenv.override {
-    cc = icc-wrapper;
-    allowedRequisites = null;
-  };
-
-  stdenv-icx = stdenv.override {
-    cc = icx-wrapper;
-    allowedRequisites = null;
-  };
-
-  stdenv-ifort = stdenv.override {
-    cc = ifort-wrapper;
-    allowedRequisites = null;
-  };
-
-in
-  {
-    inherit intel-mpi;
-    icx = icx-wrapper;
-    icc = icc-wrapper;
-    ifort = ifort-wrapper;
-
-    stdenv = stdenv-icx;
-    stdenv-icc = stdenv-icc;
-    stdenv-ifort = stdenv-ifort;
-  }

pkgs/intel-oneapi/update.sh

@@ -1,4 +0,0 @@
-#!/bin/sh
-
-curl https://apt.repos.intel.com/oneapi/dists/all/main/binary-amd64/Packages -o amd64-packages
-curl https://apt.repos.intel.com/oneapi/dists/all/main/binary-all/Packages -o all-packages

pkgs/llvm-ompss2/clang.nix

@@ -1,137 +0,0 @@
-{
-  llvmPackages_latest
-, lib
-, fetchFromGitHub
-, cmake
-, bash
-, python3
-, perl
-, which
-, elfutils
-, libffi
-, zlib
-, pkg-config
-, gcc # needed to set the rpath of libstdc++ for clang-tblgen
-, enableDebug ? false
-, useGit ? false
-, gitUrl ? "ssh://git@bscpm04.bsc.es/llvm-ompss/llvm-mono.git"
-, gitBranch ? "master"
-, gitCommit ? "880e2341c56bad1dc14e8c369fb3356bec19018e"
-}:
-
-let
-  stdenv = llvmPackages_latest.stdenv;
-
-  release = rec {
-    version = "2025.06";
-    src = fetchFromGitHub {
-      owner = "bsc-pm";
-      repo = "llvm";
-      rev = "refs/tags/github-release-${version}";
-      hash = "sha256-ww9PpRmtz/M9IyLiZ8rAehx2UW4VpQt+svf4XfKBzKo=";
-    };
-  };
-
-  git = rec {
-    version = src.shortRev;
-    src = builtins.fetchGit {
-      url = gitUrl;
-      ref = gitBranch;
-      rev = gitCommit;
-    };
-  };
-
-  source = if (useGit) then git else release;
-
-in stdenv.mkDerivation {
-  pname = "clang-ompss2";
-  inherit (source) src version;
-
-  enableParallelBuilding = true;
-
-  passthru = {
-    CC = "clang";
-    CXX = "clang++";
-
-    isClang = true;
-    isClangWithOmpss = true;
-
-    inherit gcc zlib;
-  };
-
-  nativeBuildInputs = [
-    bash
-    cmake
-    elfutils
-    llvmPackages_latest.lld
-    pkg-config
-    python3
-    perl
-    which
-    zlib
-  ];
-
-  buildInputs = [
-    libffi
-    zlib
-    gcc.cc.lib # Required for libstdc++.so.6
-  ];
-
-  # Error with -D_FORTIFY_SOURCE=2, see https://bugs.gentoo.org/636604:
-  # /build/source/compiler-rt/lib/tsan/dd/dd_interceptors.cpp:225:20:
-  # error: redefinition of 'realpath'
-  # Requires disabling the "fortify" set of flags, however, for performance we
-  # disable all:
-  hardeningDisable = [ "all" ];
-
-  cmakeBuildType = if enableDebug then "Debug" else "Release";
-
-  dontStrip = enableDebug;
-
-  dontUseCmakeBuildDir = true;
-
-  # Fix the host triple, as it has changed in a newer config.guess:
-  # https://git.savannah.gnu.org/gitweb/?p=config.git;a=commitdiff;h=ca9bfb8cc75a2be1819d89c664a867785c96c9ba
-  preConfigure = ''
-    mkdir -p build
-    cd build
-    cmakeDir="../llvm"
-    cmakeFlagsArray=(
-      "-DLLVM_HOST_TRIPLE=${stdenv.targetPlatform.config}"
-      "-DLLVM_TARGETS_TO_BUILD=host"
-      "-DLLVM_BUILD_LLVM_DYLIB=ON"
-      "-DLLVM_LINK_LLVM_DYLIB=ON"
-      # Required to run clang-ast-dump and clang-tblgen during build
-      "-DCMAKE_BUILD_RPATH=$PWD/lib:${zlib}/lib:${gcc.cc.lib}/lib"
-      "-DLLVM_ENABLE_LLD=ON"
-      "-DCMAKE_CXX_FLAGS_DEBUG=-g -ggnu-pubnames"
-      "-DCMAKE_EXE_LINKER_FLAGS_DEBUG=-Wl,--gdb-index"
-      "-DLLVM_LIT_ARGS=-sv --xunit-xml-output=xunit.xml"
-      "-DLLVM_ENABLE_PROJECTS=clang;compiler-rt;lld"
-      "-DLLVM_ENABLE_ASSERTIONS=ON"
-      "-DLLVM_INSTALL_TOOLCHAIN_ONLY=ON"
-      "-DCMAKE_INSTALL_BINDIR=bin"
-      "-DLLVM_ENABLE_ZLIB=FORCE_ON"
-      "-DLLVM_ENABLE_LIBXML2=OFF"
-      # Set the rpath to include external libraries (zlib) both on build and
-      # install
-      "-DCMAKE_INSTALL_RPATH_USE_LINK_PATH=ON"
-      "-DCMAKE_INSTALL_RPATH=${zlib}/lib:${gcc.cc.lib}/lib"
-      "-DLLVM_APPEND_VC_REV=ON"
-      "-DLLVM_FORCE_VC_REVISION=${source.version}"
-    )
-  '';
-
-# About "-DCLANG_DEFAULT_NANOS6_HOME=${nanos6}", we could specify a default
-# nanos6 installation, but this is would require a recompilation of clang each
-# time nanos6 is changed. Better to use the environment variable NANOS6_HOME,
-# and specify nanos6 at run time.
-
-  meta = {
-    homepage = "https://gitlab.pm.bsc.es/llvm-ompss/llvm-mono";
-    description = "C language family frontend for LLVM (for OmpSs-2)";
-    maintainers = with lib.maintainers.bsc; [ rpenacob ];
-    platforms = lib.platforms.linux;
-    license = [ lib.licenses.asl20 lib.licenses.llvm-exception ];
-  };
-}

pkgs/llvm-ompss2/default.nix

@@ -1,70 +0,0 @@
-{
-  stdenv
-, lib
-, gcc
-, clangOmpss2Unwrapped
-, openmp ? null
-, wrapCCWith
-, llvmPackages_latest
-, ompss2rt ? null
-}:
-
-with lib;
-
-let
-  usingNodesAndOmpv = (openmp.pname == "openmp-v" && ompss2rt.pname == "nodes");
-  sameNosv = openmp.nosv == ompss2rt.nosv;
-in
-
-assert assertMsg (usingNodesAndOmpv -> sameNosv) "OpenMP-V and NODES must share the same nOS-V";
-
-let
-  homevar = if ompss2rt.pname == "nanos6" then "NANOS6_HOME" else "NODES_HOME";
-  rtname  = if ompss2rt.pname == "nanos6" then "libnanos6" else "libnodes";
-  ompname = if openmp.pname == "openmp-v" then  "libompv" else "libomp";
-
-
-  # We need to replace the lld linker from bintools with our linker just built,
-  # otherwise we run into incompatibility issues when mixing compiler and linker
-  # versions.
-  bintools-unwrapped = llvmPackages_latest.tools.bintools-unwrapped.override {
-    lld = clangOmpss2Unwrapped;
-  };
-  bintools = llvmPackages_latest.tools.bintools.override {
-    bintools = bintools-unwrapped;
-  };
-  targetConfig = stdenv.targetPlatform.config;
-  inherit gcc;
-  cc = clangOmpss2Unwrapped;
-  gccVersion = with versions; let v = gcc.version; in concatStringsSep "." [(major v) (minor v) (patch v)];
-in wrapCCWith {
-  inherit cc bintools;
-  # extraPackages adds packages to depsTargetTargetPropagated
-  extraPackages = optional (openmp != null) openmp;
-  extraBuildCommands = ''
-    echo "-target ${targetConfig}" >> $out/nix-support/cc-cflags
-    echo "-B${gcc.cc}/lib/gcc/${targetConfig}/${gccVersion}" >> $out/nix-support/cc-cflags
-    echo "-L${gcc.cc}/lib/gcc/${targetConfig}/${gccVersion}" >> $out/nix-support/cc-ldflags
-    echo "-L${gcc.cc.lib}/lib" >> $out/nix-support/cc-ldflags
-
-    for dir in ${gcc.cc}/include/c++/*; do
-      echo "-isystem $dir" >> $out/nix-support/libcxx-cxxflags
-    done
-    for dir in ${gcc.cc}/include/c++/*/${targetConfig}; do
-      echo "-isystem $dir" >> $out/nix-support/libcxx-cxxflags
-    done
-
-    echo "--gcc-toolchain=${gcc}" >> $out/nix-support/cc-cflags
-
-    wrap clang++  $wrapper $ccPath/clang++
-
-  '' + optionalString (openmp != null) ''
-    echo "export OPENMP_RUNTIME=${ompname}" >> $out/nix-support/cc-wrapper-hook
-  '' + optionalString (ompss2rt != null) ''
-    echo "export OMPSS2_RUNTIME=${rtname}" >> $out/nix-support/cc-wrapper-hook
-    echo "export ${homevar}=${ompss2rt}"   >> $out/nix-support/cc-wrapper-hook
-  '' + optionalString (ompss2rt != null && ompss2rt.pname == "nodes") ''
-    echo "export NOSV_HOME=${ompss2rt.nosv}" >> $out/nix-support/cc-wrapper-hook
-  '';
-}
-

pkgs/llvm-ompss2/openmp.nix

@@ -1,86 +0,0 @@
-{ lib
-, llvmPackages_latest
-, monorepoSrc
-, runCommand
-, cmake
-, ninja
-, llvm
-, perl
-, pkg-config
-, version
-, nosv
-, ovni
-, python3
-, enableNosv ? false
-, enableDebug ? false
-, enableOvni ? false
-}:
-
-assert enableOvni -> enableNosv;
-
-let
-  stdenv = llvmPackages_latest.stdenv;
-in
-stdenv.mkDerivation rec {
-  pname = "openmp" + (lib.optionalString enableNosv "-v");
-  inherit version;
-
-  src = runCommand "${pname}-src" {} ''
-    mkdir -p "$out"
-    cp -r ${monorepoSrc}/cmake "$out"
-    cp -r ${monorepoSrc}/openmp "$out"
-  '';
-
-  sourceRoot = "${src.name}/openmp";
-
-  nativeBuildInputs = [
-    cmake
-    ninja
-    perl
-    pkg-config
-    python3
-  ] ++ lib.optionals enableNosv [
-    nosv
-  ] ++ lib.optionals enableOvni [
-    ovni
-  ];
-
-  doCheck = false;
-
-  hardeningDisable = [ "all" ];
-
-  cmakeBuildType = if enableDebug then "Debug" else "Release";
-
-  dontStrip = enableDebug;
-
-  separateDebugInfo = true;
-
-  cmakeFlags = [
-    "-DLIBOMP_OMPD_SUPPORT=OFF"
-    "-DOPENMP_ENABLE_LIBOMPTARGET=OFF"
-  ];
-
-  # Remove support for GNU and Intel Openmp.
-  # Also, remove libomp if building with nosv, as there is no support to build
-  # only one runtime at a time.
-  postInstall = ''
-    rm -f $out/lib/libgomp*
-    rm -f $out/lib/libiomp*
-  '' + lib.optionalString enableNosv ''
-    rm -f $out/lib/libomp.*
-    rm -f $out/libllvmrt/libomp.*
-  '';
-
-  passthru = {
-    inherit nosv;
-  };
-
-  meta = {
-    homepage = "https://gitlab.pm.bsc.es/llvm-ompss/llvm-mono";
-    description = "Support for the OpenMP language (with nOS-V)";
-    maintainers = with lib.maintainers.bsc; [ rpenacob ];
-    platforms = lib.platforms.linux;
-    license = [ lib.licenses.asl20 lib.licenses.llvm-exception ];
-  };
-}
-

pkgs/lmbench/default.nix

@@ -1,50 +0,0 @@
-{
-  lib,
-  stdenv,
-  libtirpc,
-  fetchFromGitHub
-}:
-
-stdenv.mkDerivation rec {
-  pname = "lmbench";
-  version = "941a0dcc";
-
-  # We use the intel repo as they have fixed some problems
-  src = fetchFromGitHub {
-    owner = "intel";
-    repo = pname;
-    rev = "941a0dcc0e7bdd9bb0dee05d7f620e77da8c43af";
-    sha256 = "sha256-SzwplRBO3V0R3m3p15n71ivYBMGoLsajFK2TapYxdqk=";
-  };
-
-  postPatch = ''
-    sed -i "s@/bin/rm@rm@g" $(find . -name Makefile)
-  '';
-
-  buildInputs = [ libtirpc ];
-  patches = [ ./fix-install.patch ./gcc-14.patch ];
-
-  hardeningDisable = [ "all" ];
-
-  enableParallelBuilding = false;
-
-  preBuild = ''
-    makeFlagsArray+=(
-      -C src
-      BASE=$out
-      CFLAGS=-Wno-implicit-int
-      CPPFLAGS=-I${libtirpc.dev}/include/tirpc
-      LDFLAGS=-ltirpc
-      CC=$CC
-      AR=$AR
-    )
-  '';
-
-  meta = {
-    description = "lmbench";
-    homepage = "https://github.com/intel/lmbench";
-    maintainers = with lib.maintainers.bsc; [ rarias ];
-    platforms = lib.platforms.all;
-    license = lib.licenses.gpl2Plus;
-  };
-}

pkgs/lmbench/fix-install.patch

@@ -1,10 +0,0 @@
---- a/src/Makefile
-+++ b/src/Makefile
-@@ -144,6 +144,7 @@ install-target:
- 	if [ ! -d $(BASE)/include ]; then mkdir $(BASE)/include; fi
- 	if [ ! -d $(BASE)/lib ]; then mkdir $(BASE)/lib; fi
- 	cp $(EXES) $(BASE)/bin
-+	cp $(OPT_EXES) $(BASE)/bin
- 	cp $(INCS) $(BASE)/include
- 	cp $O/lmbench.a $(BASE)/lib/libmbench.a
- 	cd ../doc; env MAKEFLAGS="$(MAKEFLAGS)" make CC="${CC}" OS="${OS}" BASE="$(BASE)" install

pkgs/lmbench/gcc-14.patch

@@ -1,77 +0,0 @@
-From a3c6e7d303cd8368e8d4e35be7cbc1997e801257 Mon Sep 17 00:00:00 2001
-From: Rodrigo Arias Mallo <rodrigo.arias@bsc.es>
-Date: Mon, 21 Jul 2025 17:38:58 +0200
-Subject: [PATCH] Misc fixes to build with gcc 14
-
----
- src/bench.h      | 2 ++
- src/lat_select.c | 2 +-
- src/lib_debug.c  | 1 +
- src/lib_sched.c  | 2 +-
- src/lib_timing.c | 2 +-
- 5 files changed, 6 insertions(+), 3 deletions(-)
-
-diff --git a/src/bench.h b/src/bench.h
-index 8166408..4da9079 100644
---- a/src/bench.h
-+++ b/src/bench.h
-@@ -320,4 +320,6 @@ extern int handle_scheduler(int childno, int benchproc, int nbenchprocs);
- extern char *rpc_xact_1();
- extern char *client_rpc_xact_1();
- 
-+void lmbench_usage(int argc, char *argv[], char* usage);
-+
- #endif /* _BENCH_H */
-diff --git a/src/lat_select.c b/src/lat_select.c
-index 583b505..39df369 100644
---- a/src/lat_select.c
-+++ b/src/lat_select.c
-@@ -164,7 +164,7 @@ doit(iter_t iterations, void * cookie)
- 	state_t * 	state = (state_t *)cookie;
- 	fd_set		nosave;
- 	static struct timeval tv;
--	static count = 0;
-+	static int count = 0;
- 	
- 	tv.tv_sec = 0;
- 	tv.tv_usec = 0;
-diff --git a/src/lib_debug.c b/src/lib_debug.c
-index e8347dd..cf65312 100644
---- a/src/lib_debug.c
-+++ b/src/lib_debug.c
-@@ -1,5 +1,6 @@
- #include "bench.h"
- #include "lib_debug.h"
-+#include <math.h>
- 
- /*
-  * return micro-seconds / iteration at the the fraction point.
-diff --git a/src/lib_sched.c b/src/lib_sched.c
-index aa83ae0..4f16bbf 100644
---- a/src/lib_sched.c
-+++ b/src/lib_sched.c
-@@ -91,7 +91,7 @@ handle_scheduler(int childno, int benchproc, int nbenchprocs)
- 			     childno * (nbenchprocs + 1) + benchproc);
- 	} else {
- 		/* default action: do nothing */
--		return;
-+		return 0;
- 	}
- 
- 	return sched_pin(cpu % sched_ncpus());
-diff --git a/src/lib_timing.c b/src/lib_timing.c
-index af8cf68..7ec9652 100644
---- a/src/lib_timing.c
-+++ b/src/lib_timing.c
-@@ -1623,7 +1623,7 @@ bread(void* buf, long nbytes)
- void
- touch(char *buf, int nbytes)
- {
--	static	psize;
-+	static int psize;
- 
- 	if (!psize) {
- 		psize = getpagesize();
--- 
-2.49.0
-

pkgs/maintainers.nix

@@ -1,7 +0,0 @@
-builtins.mapAttrs (name: value: { email = name + "@bsc.es"; } // value) {
-  abonerib.name = "Aleix Boné";
-  arocanon.name = "Aleix Roca";
-  rarias.name = "Rodrigo Arias";
-  rpenacob.name = "Raúl Peñacoba";
-  varcila.name = "Vincent Arcila";
-}

pkgs/mcxx/default.nix

@@ -1,74 +0,0 @@
-{
-  stdenv
-, lib
-, fetchFromGitHub
-, autoreconfHook
-, nanos6
-, gperf
-, python3
-, gfortran
-, pkg-config
-, sqlite
-, flex
-, bison
-, gcc
-}:
-
-stdenv.mkDerivation rec {
-  pname = "mcxx";
-  version = "2023.11";
-
-  passthru = {
-    CC = "mcc";
-    CXX = "mcxx";
-  };
-
-  # mcxx doesn't use tags, so we pick the same version of the ompss2 release
-  src = fetchFromGitHub {
-    owner = "bsc-pm";
-    repo = pname;
-    rev = "github-release-${version}";
-    hash = "sha256-GyBvyy/HD3t9rHSXAYZRMhn4o4Nm/HFfjuOS8J0LPu8=";
-  };
-
-  enableParallelBuilding = true;
-
-  nativeBuildInputs = [
-    autoreconfHook
-    bison
-    flex
-    python3
-    gfortran
-    pkg-config
-    gperf
-    gcc
-  ];
-
-  buildInputs = [
-    nanos6
-    sqlite.dev
-  ];
-
-  patches = [ ./intel.patch ];
-
-  preConfigure = ''
-    export ICC=icc
-    export ICPC=icpc
-    export IFORT=ifort
-  '';
-
-  configureFlags = [
-    "--enable-ompss-2"
-    "--with-nanos6=${nanos6}"
-# Fails with "memory exhausted" with bison 3.7.1
-#    "--enable-bison-regeneration"
-  ];
-
-  meta = {
-    homepage = "https://github.com/bsc-pm/mcxx";
-    description = "C/C++/Fortran source-to-source compilation infrastructure aimed at fast prototyping";
-    maintainers = with lib.maintainers.bsc; [ rpenacob ];
-    platforms = lib.platforms.linux;
-    license = lib.licenses.gpl3Plus;
-  };
-}

pkgs/mcxx/git.nix

@@ -1,69 +0,0 @@
-{
-  stdenv
-, lib
-, fetchFromGitHub
-, autoreconfHook
-, nanos6
-, gperf
-, python
-, gfortran
-, pkg-config
-, sqlite
-, flex
-, bison
-, gcc
-}:
-
-stdenv.mkDerivation rec {
-  pname = "mcxx";
-  version = src.shortRev;
-
-  passthru = {
-    CC = "mcc";
-    CXX = "mcxx";
-  };
-
-  src = builtins.fetchGit {
-    url = "ssh://git@bscpm04.bsc.es/mercurium/mcxx";
-    ref = "master";
-  };
-
-  enableParallelBuilding = true;
-
-  buildInputs = [
-    autoreconfHook
-    nanos6
-    gperf
-    python
-    gfortran
-    pkg-config
-    sqlite.dev
-    bison
-    flex
-    gcc
-  ];
-
-  # TODO: Not sure if we need this patch anymore (?)
-  #patches = [ ./intel.patch ];
-
-  preConfigure = ''
-    export ICC=icc
-    export ICPC=icpc
-    export IFORT=ifort
-  '';
-
-  configureFlags = [
-    "--enable-ompss-2"
-    "--with-nanos6=${nanos6}"
-# Fails with "memory exhausted" with bison 3.7.1
-#    "--enable-bison-regeneration"
-  ];
-
-  meta = {
-    homepage = "https://github.com/bsc-pm/mcxx";
-    description = "C/C++/Fortran source-to-source compilation infrastructure aimed at fast prototyping";
-    maintainers = with lib.maintainers.bsc; [ rpenacob ];
-    platforms = lib.platforms.linux;
-    license = lib.licenses.gpl3Plus;
-  };
-}

pkgs/mcxx/intel.patch

@@ -1,19 +0,0 @@
---- a/configure.ac	2020-07-10 16:15:11.431606455 +0200
-+++ b/configure.ac	2020-07-10 16:15:24.291586572 +0200
-@@ -367,16 +367,6 @@
-   [ enable_intel_compilers="yes"])
- AC_MSG_RESULT([$enable_intel_compilers])
- 
--
--IFORT=
--ICC=
--ICPC=
--if test x"$enable_intel_compilers" = x"yes";
--then
--   AC_CHECK_PROG([IFORT], [ifort], [ifort])
--   AC_CHECK_PROG([ICC], [icc], [icc])
--   AC_CHECK_PROG([ICPC], [icpc], [icpc])
--fi
- dnl --------------- END Intel Compilers ---------------------
- 
- mic_compilation="no"

pkgs/mcxx/rarias.nix

@@ -1,68 +0,0 @@
-{ stdenv
-, lib
-, fetchgit
-, autoreconfHook
-, nanos6
-, gperf
-, python
-, gfortran
-, pkg-config
-, sqlite
-, flex
-, bison
-, gcc
-}:
-
-stdenv.mkDerivation rec {
-  name = "mcxx-rarias";
-  #version attribute ignored when using fetchgit:
-  #version = "2.2.0-70a299cf";
-
-  #src = /home/Computational/rarias/mcxx;
-  src = builtins.fetchGit {
-    url = "ssh://git@bscpm04.bsc.es/rarias/mcxx";
-    rev = "44129a6ac05b8f78b06e9e2eff71438b5ca4d29f";
-  };
-
-  enableParallelBuilding = true;
-
-  buildInputs = [
-    autoreconfHook
-    nanos6
-    gperf
-    python
-    gfortran
-    pkg-config
-    sqlite.dev
-    bison
-    flex
-    gcc
-  ];
-
-  patches = [ ./intel.patch ];
-
-  preConfigure = ''
-    export ICC=icc
-    export ICPC=icpc
-    export IFORT=ifort
-  '';
-
-  configureFlags = [
-    "--enable-ompss-2"
-    "--with-nanos6=${nanos6}"
-#    "--enable-bison-regeneration"
-  ];
-
-  # Regenerate ia32 builtins to add the ones for gcc9
-  #preBuild = ''
-  #  make generate_builtins_ia32 GXX_X86_BUILTINS=${gcc}/bin/g++
-  #'';
-  #
-  meta = {
-    homepage = "https://github.com/bsc-pm/mcxx";
-    description = "C/C++/Fortran source-to-source compilation infrastructure aimed at fast prototyping";
-    maintainers = with lib.maintainers.bsc; [ rarias ];
-    platforms = lib.platforms.linux;
-    license = lib.licenses.gpl3Plus;
-  };
-}

pkgs/mpich/default.nix

@@ -1,40 +0,0 @@
-{
-  stdenv
-, lib
-, libfabric
-, mpich
-, pmix
-, gfortran
-, symlinkJoin
-}:
-
-let
-  # pmix comes with the libraries in .out and headers in .dev
-  pmixAll = symlinkJoin {
-    name = "pmix-all";
-    paths = [ pmix.dev pmix.out ];
-  };
-in mpich.overrideAttrs (old: {
-  buildInput = old.buildInputs ++ [
-    libfabric
-    pmixAll
-  ];
-  configureFlags = [
-    "--enable-shared"
-    "--enable-sharedlib"
-    "--with-pm=no"
-    "--with-device=ch4:ofi"
-    "--with-pmi=pmix"
-    "--with-pmix=${pmixAll}"
-    "--with-libfabric=${libfabric}"
-    "--enable-g=log"
-  ] ++ lib.optionals (lib.versionAtLeast gfortran.version "10") [
-    "FFLAGS=-fallow-argument-mismatch" # https://github.com/pmodels/mpich/issues/4300
-    "FCFLAGS=-fallow-argument-mismatch"
-  ];
-  hardeningDisable = [ "all" ];
-
-  meta = old.meta // {
-    maintainers = old.meta.maintainers ++ (with lib.maintainers.bsc; [ rarias ]);
-  };
-})

pkgs/nanos6/0001-Add-missing-cstdint-include.patch

@@ -1,32 +0,0 @@
-From 6fc5bef066ac011d6b15a7c090f4498b0b730818 Mon Sep 17 00:00:00 2001
-From: Rodrigo Arias Mallo <rodrigo.arias@bsc.es>
-Date: Fri, 12 Apr 2024 14:44:43 +0200
-Subject: [PATCH] Add missing cstdint include
-
----
- src/dependencies/DataTrackingSupport.hpp | 3 ++-
- 1 file changed, 2 insertions(+), 1 deletion(-)
-
-diff --git a/src/dependencies/DataTrackingSupport.hpp b/src/dependencies/DataTrackingSupport.hpp
-index 56226085..cdfd5e1c 100644
---- a/src/dependencies/DataTrackingSupport.hpp
-+++ b/src/dependencies/DataTrackingSupport.hpp
-@@ -1,13 +1,14 @@
- /*
- 	This file is part of Nanos6 and is licensed under the terms contained in the COPYING file.
- 
--	Copyright (C) 2020 Barcelona Supercomputing Center (BSC)
-+	Copyright (C) 2020-2024 Barcelona Supercomputing Center (BSC)
- */
- 
- #ifndef DATA_TRACKING_SUPPORT_HPP
- #define DATA_TRACKING_SUPPORT_HPP
- 
- #include "support/config/ConfigVariable.hpp"
-+#include <cstdint>
- 
- class Task;
- 
--- 
-2.44.0
-

pkgs/nanos6/default.nix

@@ -1,130 +0,0 @@
-{
-  stdenv
-, lib
-, fetchFromGitHub
-, automake
-, autoconf
-, libtool
-, pkg-config
-, numactl
-, hwloc
-, papi
-, boost
-, ovni
-, enableDebug ? false
-, enableJemalloc ? true
-, jemallocNanos6 ? null
-, cachelineBytes ? 64
-, enableGlibcxxDebug ? false
-, enablePapi ? stdenv.hostPlatform == stdenv.buildPlatform # Disabled when cross-compiling
-, useGit ? false
-, gitUrl ? "ssh://git@bscpm04.bsc.es/nanos6/nanos6"
-, gitBranch ? "master"
-, gitCommit ? "f82762b66c82b5174a8eaad33f6c2f335ac759b4"
-}:
-
-assert enableJemalloc -> (jemallocNanos6 != null);
-
-with lib;
-
-let
-  release = rec {
-    version = "4.3";
-    src = fetchFromGitHub {
-      owner = "bsc-pm";
-      repo = "nanos6";
-      rev = "version-${version}";
-      hash = "sha256-/c6WiKBsAo/01uvMRmjv0PMucbrgvaGmbxlPE6q+dfE=";
-    };
-  };
-
-  git = rec {
-    version = src.shortRev;
-    src = builtins.fetchGit {
-      url = gitUrl;
-      ref = gitBranch;
-      rev = gitCommit;
-    };
-  };
-
-  source = if (useGit) then git else release;
-
-  isCross = stdenv.hostPlatform != stdenv.buildPlatform;
-in
-  stdenv.mkDerivation (source // {
-    pname = "nanos6";
-
-    prePatch = ''
-      patchShebangs scripts/generate_config.sh
-      patchShebangs autogen.sh
-    '';
-
-    enableParallelBuilding = true;
-
-    preConfigure = ''
-      export CACHELINE_WIDTH=${toString cachelineBytes}
-      ./autogen.sh
-    '' + lib.optionalString (useGit) ''
-      export NANOS6_GIT_VERSION=${gitCommit}
-      export NANOS6_GIT_BRANCH=${gitBranch}
-    '';
-
-    configureFlags = [
-      "--with-hwloc=${hwloc}"
-      "--disable-all-instrumentations"
-      "--enable-ovni-instrumentation"
-      "--with-ovni=${ovni}"
-      "--with-boost=${boost.dev}"
-    ] ++
-      (optional enableJemalloc "--with-jemalloc=${jemallocNanos6}") ++
-      (optional enableGlibcxxDebug "CXXFLAGS=-D_GLIBCXX_DEBUG") ++
-      # Most nanos6 api symbols are resolved at runtime, so prefer
-      # ifunc by default
-      (optional isCross "--with-symbol-resolution=ifunc");
-
-    postConfigure = lib.optionalString (!enableDebug) ''
-      # Disable debug
-      sed -i 's/\([a-zA-Z0-9_]*nanos6_debug[a-zA-Z0-9_]*\)\s*[+]\?=.*/\1 =/g' Makefile.am
-    '';
-
-    # The "bindnow" flags are incompatible with ifunc resolution mechanism. We
-    # disable all by default, which includes bindnow.
-    hardeningDisable = [ "all" ];
-
-    # Keep debug symbols in the debug variant of the library
-    dontStrip = enableDebug;
-    separateDebugInfo = true;
-
-    nativeBuildInputs = [
-      autoconf
-      automake
-      libtool
-      pkg-config
-
-      # TODO: papi_version is needed for configure:
-      # ./configure: line 27378: papi_version: command not found
-      # This probably breaks cross-compilation
-    ] ++ lib.optionals enablePapi [ papi ];
-
-    buildInputs = [
-      boost
-      numactl
-      hwloc
-      ovni
-    ] ++ lib.optionals enablePapi [ papi ];
-
-    # Create a script that sets NANOS6_HOME
-    postInstall = ''
-      mkdir -p $out/nix-support
-      echo "export NANOS6_HOME=$out" >> $out/nix-support/setup-hook
-    '';
-
-    meta = {
-      homepage = "https://github.com/bsc-pm/nanos6";
-      description = "Nanos6 runtime for OmpSs-2" +
-        optionalString (enableDebug) " (with debug symbols)";
-      maintainers = with lib.maintainers.bsc; [ rarias ];
-      platforms = lib.platforms.linux;
-      license = lib.licenses.gpl3Plus;
-    };
-  })

pkgs/nanos6/jemalloc.nix

@@ -1,13 +0,0 @@
-{ jemalloc, lib }:
-
-jemalloc.overrideAttrs (old: {
-  configureFlags = old.configureFlags ++ [
-    "--with-jemalloc-prefix=nanos6_je_"
-    "--enable-stats"
-  ];
-  hardeningDisable = [ "all" ];
-  meta = old.meta // {
-    description = old.meta.description + " (for Nanos6)";
-    maintainers = (old.meta.maintainers or []) ++ (with lib.maintainers.bsc; [ rarias ]);
-  };
-})

pkgs/nix-wrap/default.nix

@@ -1,100 +0,0 @@
-{
-  stdenv
-, lib
-, bashInteractive
-, busybox
-, nix
-, writeText
-, pkgsStatic
-}:
-
-let
-  bubblewrap = pkgsStatic.bubblewrap;
-  nixPrefix = "/gpfs/projects/bsc15/nix";
-  nixConfDir = "share";
-  nix_wrap_sh = writeText "nix-wrap.sh" ''
-    #!/usr/bin/env bash
-    #
-    busybox_bin="${nixPrefix}${busybox}/bin"
-    bubblewrap_bin="${nixPrefix}/${bubblewrap}/bin"
-
-    bashInteractive_bin="${bashInteractive}/bin"
-    nix_bin="${nix}/bin"
-    
-    rootdir=$(mktemp -d)
-    tmpdir=$(mktemp -d)
-    
-    args=(
-      --bind "$rootdir/" /
-      --bind "${nixPrefix}/nix" /nix
-      --bind "$busybox_bin" /bin
-      --dev-bind /dev /dev
-      --bind /boot /boot
-      --proc /proc
-      --bind /run /run
-      --bind /sys /sys
-      --bind "$tmpdir" /tmp
-      --bind "$PWD" "$PWD"
-      --bind /etc/host.conf /etc/host.conf
-      --bind /etc/hosts /etc/hosts
-      --bind /etc/networks /etc/networks
-      --bind /etc/passwd /etc/passwd
-      --bind /etc/group /etc/group
-      --bind /etc/nsswitch.conf /etc/nsswitch.conf
-      --bind /etc/resolv.conf /etc/resolv.conf
-    )
-    
-    export PATH="/bin:$bashInteractive_bin"
-    export PATH="$nix_bin:$PATH"
-    export TMPDIR=/tmp
-    export PS1="[nix-wrap] \u@\h \W $ "
-    export NIX_CONF_DIR=@out@/share
-
-    if [ $# -eq 0 ]; then
-      "$bubblewrap_bin/bwrap" ''${args[@]} /bin/sh
-    else
-      "$bubblewrap_bin/bwrap" ''${args[@]} "''${@}"
-    fi
-    
-  '';
-  nix_conf = writeText "nix.conf" ''
-    experimental-features = nix-command flakes
-    sandbox-fallback = false
-  '';
-
-in
-
-stdenv.mkDerivation rec {
-  version = "0.0.1";
-  name = "nix-wrap";
-  buildInputs = [
-    bashInteractive
-    busybox
-    nix
-  ];
-  src = null;
-  dontUnpack = true;
-  dontConfigure = true;
-  dontBuild = true;
-  dontPatchShebangs = true;
-  NIX_DEBUG = 0;
-
-  installPhase = ''
-    mkdir -p $out/bin
-    substituteAll ${nix_wrap_sh} $out/bin/nix-wrap
-    chmod +x $out/bin/nix-wrap
-
-    mkdir -p $out/share
-    cp ${nix_conf} $out/share/nix.conf
-  '';
-
-  meta = {
-    homepage = null;
-    description = "nix bubblewrap wrapper";
-    maintainers = [ ];
-    broken = true;
-    platforms = lib.platforms.linux;
-    license = lib.licenses.mit;
-  };
-}
-

pkgs/nixtools/default.nix

@@ -1,26 +0,0 @@
-{
-  stdenv
-, lib
-, glibc
-}:
-
-stdenv.mkDerivation rec {
-  pname = "nixtools";
-  version = "${src.shortRev}";
-  src = builtins.fetchGit {
-    url = "ssh://git@bscpm04.bsc.es/rarias/nixtools";
-    ref = "master";
-    rev = "a103e392048ace3ed88ce74648b32c9e6ed094da";
-  };
-  buildInputs = [ glibc.static ];
-  makeFlags = [ "DESTDIR=$(out)" ];
-  preBuild = "env";
-  dontPatchShebangs = true;
-
-  meta = {
-    homepage = "https://gitlab.pm.bsc.es/rarias/nixtools";
-    description = "nix bubblewrap wrapper";
-    maintainers = with lib.maintainers.bsc; [ rarias ];
-    platforms = lib.platforms.linux;
-  };
-}

pkgs/nodes/default.nix

@@ -1,92 +0,0 @@
-{
-  stdenv
-, lib
-, fetchFromGitHub
-, pkg-config
-, perl
-, numactl
-, hwloc
-, boost
-, autoreconfHook
-, ovni
-, nosv
-, clangOmpss2
-, useGit ? false
-, gitUrl ? "ssh://git@gitlab-internal.bsc.es/nos-v/nodes.git"
-, gitBranch ? "master"
-, gitCommit ? "6002ec9ae6eb876d962cc34366952a3b26599ba6"
-}:
-
-with lib;
-
-let
-  release = rec {
-    version = "1.3";
-    src = fetchFromGitHub {
-      owner = "bsc-pm";
-      repo = "nodes";
-      rev = "version-${version}";
-      hash = "sha256-cFb9pxcjtkMmH0CsGgUO9LTdXDNh7MCqicgGWawLrsU=";
-    };
-  };
-
-  git = rec {
-    version = src.shortRev;
-    src = builtins.fetchGit {
-      url = gitUrl;
-      ref = gitBranch;
-      rev = gitCommit;
-    };
-  };
-
-  source = if (useGit) then git else release;
-in
-  stdenv.mkDerivation rec {
-    pname = "nodes";
-    inherit (source) src version;
-
-    enableParallelBuilding = true;
-    dontStrip = true;
-    separateDebugInfo = true;
-
-    configureFlags = [
-      "--with-nosv=${nosv}"
-      "--with-ovni=${ovni}"
-    ] ++ lib.optionals doCheck [
-      "--with-nodes-clang=${clangOmpss2}"
-    ];
-
-    doCheck = false;
-    nativeCheckInputs = [
-      clangOmpss2
-    ];
-
-    # The "bindnow" flags are incompatible with ifunc resolution mechanism. We
-    # disable all by default, which includes bindnow.
-    hardeningDisable = [ "all" ];
-
-    nativeBuildInputs = [
-      autoreconfHook
-      pkg-config
-    ];
-
-    buildInputs = [
-      boost
-      numactl
-      hwloc
-      nosv
-      ovni
-    ];
-
-    passthru = {
-      inherit nosv;
-    };
-
-    meta = {
-      homepage = "https://gitlab.bsc.es/nos-v/nodes";
-      description = "Runtime library designed to work on top of the nOS-V runtime";
-      maintainers = with lib.maintainers.bsc; [ abonerib rarias ];
-      platforms = lib.platforms.linux;
-      license = lib.licenses.gpl3Plus;
-    };
-  }

pkgs/nosv/default.nix

@@ -1,70 +0,0 @@
-{
-  stdenv
-, lib
-, autoreconfHook
-, fetchFromGitHub
-, pkg-config
-, numactl
-, hwloc
-, papi
-, enablePapi ? stdenv.hostPlatform == stdenv.buildPlatform # Disabled when cross-compiling
-, cacheline ? 64 # bits
-, ovni ? null
-, useGit ? false
-, gitUrl ? "git@gitlab-internal.bsc.es:nos-v/nos-v.git"
-, gitBranch ? "master"
-, gitCommit ? "9f47063873c3aa9d6a47482a82c5000a8c813dd8"
-}:
-
-with lib;
-
-let
-  release = rec {
-    version = "3.2.0";
-    src = fetchFromGitHub {
-      owner = "bsc-pm";
-      repo = "nos-v";
-      rev = "${version}";
-      hash = "sha256-yaz92426EM8trdkBJlISmAoG9KJCDTvoAW/HKrasvOw=";
-    };
-  };
-
-  git = rec {
-    version = src.shortRev;
-    src = builtins.fetchGit {
-      url = gitUrl;
-      ref = gitBranch;
-      rev = gitCommit;
-    };
-  };
-
-  source = if (useGit) then git else release;
-in
-  stdenv.mkDerivation rec {
-    pname = "nosv";
-    inherit (source) src version;
-    hardeningDisable = [ "all" ];
-    dontStrip = true;
-    separateDebugInfo = true;
-    configureFlags = [
-      "--with-ovni=${ovni}"
-      "CACHELINE_WIDTH=${toString cacheline}"
-    ];
-    nativeBuildInputs = [
-      autoreconfHook
-      pkg-config
-    ];
-    buildInputs = [
-      numactl
-      hwloc
-      ovni
-    ] ++ lib.optionals enablePapi [ papi ];
-
-    meta = {
-      homepage = "https://gitlab.bsc.es/nos-v/nos-v";
-      description = "Tasking library enables the co-execution of multiple applications with system-wide scheduling and a centralized management of resources";
-      maintainers = with lib.maintainers.bsc; [ abonerib rarias ];
-      platforms = lib.platforms.linux;
-      license = lib.licenses.gpl3Plus;
-    };
-  }

pkgs/osu/default.nix

@@ -1,48 +0,0 @@
-{
-  stdenv
-, fetchurl
-, mpi
-, lib
-, symlinkJoin
-}:
-
-let
-  mpiAll = symlinkJoin {
-    name = "mpi-all";
-    paths = [ mpi.all ];
-  };
-in
-
-stdenv.mkDerivation rec {
-  version = "7.1-1";
-  name = "osu-micro-benchmarks-${version}";
-
-  src = fetchurl {
-    url = "https://mvapich.cse.ohio-state.edu/download/mvapich/osu-micro-benchmarks-${version}.tar.gz";
-    sha256 = "sha256-hfTdi+HfMSVeIyhSdprluC6HpfsUvi+Ouhrp3o/+ORo=";
-  };
-
-  doCheck = true;
-  enableParallelBuilding = true;
-  nativeBuildInputs = [ mpiAll ];
-  buildInputs = [ mpiAll ];
-  hardeningDisable = [ "all" ];
-  configureFlags = [
-      "CC=mpicc"
-      "CXX=mpicxx"
-  ];
-
-  postInstall = ''
-    mkdir -p $out/bin
-    for f in $(find $out -executable -type f); do
-      ln -s "$f" $out/bin/$(basename "$f")
-    done
-  '';
-
-  meta = {
-    description = "OSU Micro-Benchmarks";
-    homepage = "http://mvapich.cse.ohio-state.edu/benchmarks/";
-    maintainers = [ ];
-    platforms = lib.platforms.all;
-  };
-}

pkgs/overlay.nix

@@ -0,0 +1,67 @@
+final: prev:
+{
+  # Set MPICH as default
+  mpi = final.mpich;
+
+  # Configure the network for MPICH
+  mpich = with final; let
+    # pmix comes with the libraries in .out and headers in .dev
+    pmixAll = symlinkJoin {
+      name = "pmix-all";
+      paths = [ pmix.dev pmix.out ];
+    };
+  in prev.mpich.overrideAttrs (old: {
+    buildInput = old.buildInputs ++ [
+      libfabric
+      pmixAll
+    ];
+    configureFlags = [
+      "--enable-shared"
+      "--enable-sharedlib"
+      "--with-pm=no"
+      "--with-device=ch4:ofi"
+      "--with-pmi=pmix"
+      "--with-pmix=${pmixAll}"
+      "--with-libfabric=${libfabric}"
+      "--enable-g=log"
+    ] ++ lib.optionals (lib.versionAtLeast gfortran.version "10") [
+      "FFLAGS=-fallow-argument-mismatch" # https://github.com/pmodels/mpich/issues/4300
+      "FCFLAGS=-fallow-argument-mismatch"
+    ];
+  });
+
+  slurm = prev.slurm.overrideAttrs (old: {
+    patches = (old.patches or []) ++ [
+      # See https://bugs.schedmd.com/show_bug.cgi?id=19324
+      ./slurm-rank-expansion.patch
+    ];
+    # Install also the pam_slurm_adopt library to restrict users from accessing
+    # nodes with no job allocated.
+    postBuild = (old.postBuild or "") + ''
+      pushd contribs/pam_slurm_adopt
+        make "PAM_DIR=$out/lib/security"
+      popd
+    '';
+    postInstall = (old.postInstall or "") + ''
+      pushd contribs/pam_slurm_adopt
+        make "PAM_DIR=$out/lib/security" install
+      popd
+    '';
+  });
+
+  prometheus-slurm-exporter = prev.callPackage ./slurm-exporter.nix { };
+  meteocat-exporter = prev.callPackage ./meteocat-exporter/default.nix { };
+  upc-qaire-exporter = prev.callPackage ./upc-qaire-exporter/default.nix { };
+  cudainfo = prev.callPackage ./cudainfo/default.nix { };
+
+  amd-uprof = prev.callPackage ./amd-uprof/default.nix { };
+
+  # FIXME: Extend this to all linuxPackages variants. Open problem, see:
+  # https://discourse.nixos.org/t/whats-the-right-way-to-make-a-custom-kernel-module-available/4636
+  linuxPackages = prev.linuxPackages.extend (_final: _prev: {
+    amd-uprof-driver = _prev.callPackage ./amd-uprof/driver.nix { };
+  });
+  linuxPackages_latest = prev.linuxPackages_latest.extend(_final: _prev: {
+    amd-uprof-driver = _prev.callPackage ./amd-uprof/driver.nix { };
+  });
+}

pkgs/ovni/default.nix

@@ -1,67 +0,0 @@
-{
-  stdenv
-, lib
-, cmake
-, mpi
-, fetchFromGitHub
-, useGit ? false
-, gitBranch ? "master"
-, gitUrl ? "ssh://git@bscpm04.bsc.es/rarias/ovni.git"
-, gitCommit ? "e4f62382076f0cf0b1d08175cf57cc0bc51abc61"
-, enableDebug ? false
-# Only enable MPI if the build is native (fails on cross-compilation)
-, useMpi ? (stdenv.buildPlatform.canExecute stdenv.hostPlatform)
-}:
-
-let
-  release = rec {
-    version = "1.12.0";
-    src = fetchFromGitHub {
-      owner = "bsc-pm";
-      repo = "ovni";
-      rev = "${version}";
-      hash = "sha256-H04JvsVKrdqr3ON7JhU0g17jjlg/jzQ7eTfx9vUNd3E=";
-    } // { shortRev = "a73afcf"; };
-  };
-
-  git = rec {
-    version = src.shortRev;
-    src = builtins.fetchGit {
-      url = gitUrl;
-      ref = gitBranch;
-      rev = gitCommit;
-    };
-  };
-
-  source = if (useGit) then git else release;
-in
-  stdenv.mkDerivation rec {
-    pname = "ovni";
-    inherit (source) src version;
-    dontStrip = true;
-    separateDebugInfo = true;
-    postPatch = ''
-      patchShebangs --build test/
-    '';
-    nativeBuildInputs = [ cmake ] ++ lib.optionals (useMpi) [ mpi ];
-    buildInputs = lib.optionals (useMpi) [ mpi ];
-    cmakeBuildType = if (enableDebug) then "Debug" else "Release";
-    cmakeFlags = [
-      "-DOVNI_GIT_COMMIT=${src.shortRev}"
-    ] ++ lib.optionals (!useMpi) [ "-DUSE_MPI=OFF" ];
-    preCheck = ''
-      export CTEST_OUTPUT_ON_FAILURE=1
-    '';
-    doCheck = true;
-    checkTarget = "test";
-    hardeningDisable = [ "all" ];
-
-    meta = {
-      homepage = "https://ovni.readthedocs.io";
-      description = "Obtuse but Versatile Nanoscale Instrumentation";
-      maintainers = with lib.maintainers.bsc; [ rarias ];
-      platforms = lib.platforms.linux;
-      license = lib.licenses.gpl3Plus;
-      cross = true;
-    };
-  }

pkgs/parastation/pscom.nix

@@ -1,22 +0,0 @@
-{ stdenv
-, popt
-}:
-
-stdenv.mkDerivation rec {
-  pname = "pscom";
-  version = "5.4.6-1";
-
-  src = builtins.fetchTarball {
-    url = "https://github.com/ParaStation/${pname}/archive/${version}.tar.gz";
-    sha256 = "1n9ic0j94iy09j287cfpfy0dd2bk17qakf1ml669jkibxbc5fqk8";
-  };
-
-  postPatch = ''
-    patchShebangs ./
-  '';
-
-  buildInputs = [ popt ];
-  preferLocalBuild = true;
-
-  enableParallelBuilding = false;
-}

pkgs/parastation/psmpi.nix

@@ -1,33 +0,0 @@
-{ stdenv
-, pscom
-, perl
-}:
-
-stdenv.mkDerivation rec {
-  pname = "psmpi";
-  version = "5.4.6-1";
-
-  src = builtins.fetchTarball {
-    url = "https://github.com/ParaStation/${pname}/archive/${version}.tar.gz";
-    sha256 = "1kr624216fz8pmfgbwdb3ks77pr6zhrssmn16j3pwaq5mkf3i9wc";
-  };
-
-  postPatch = ''
-    patchShebangs ./
-    echo "${version}" > VERSION
-  '';
-
-  preferLocalBuild = true;
-  buildInputs = [ pscom ];
-  nativeBuildInputs = [ perl ];
-  #makeFlags = [ "V=1" ];
-
-  configureFlags = [
-    "--with-confset=default"
-    "--with-threading"
-    "--disable-fortran"
-    "MPICH2_LDFLAGS=-lpsco"
-  ];
-
-  enableParallelBuilding = false;
-}

pkgs/paraver/default.nix

@@ -1,106 +0,0 @@
-{
-  stdenv
-, lib
-, fetchFromGitHub
-, autoreconfHook
-, boost
-, libxml2
-, xml2
-, wxGTK32
-, autoconf
-, automake
-, paraverKernel
-, openssl
-, glibcLocales
-, wrapGAppsHook
-}:
-
-let
-  wx = wxGTK32;
-in
-stdenv.mkDerivation rec {
-  pname = "wxparaver";
-  version = "4.12.0";
-
-  src = fetchFromGitHub {
-    owner = "bsc-performance-tools";
-    repo = "wxparaver";
-    rev = "v${version}";
-    sha256 = "sha256-YsO5gsuEFQdki3lQudEqgo5WXOt/fPdvNw5OxZQ86Zo=";
-  };
-
-  patches = [
-    ./do-not-steal-focus-on-redraw.patch
-
-    # Fix for boost >=1.87 (thanks to gamezelda)
-    # https://aur.archlinux.org/cgit/aur.git/commit/?h=wxparaver&id=b0dcd08c472536e0a1a3cc1dfbc4c77d9f5e0d47
-    ./fix-boost-87.patch
-  ];
-
-  hardeningDisable = [ "all" ];
-
-  # Fix the PARAVER_HOME variable
-  postPatch = ''
-    sed -i 's@^PARAVER_HOME=.*$@PARAVER_HOME='$out'@g' docs/wxparaver
-    sed -i '1aexport LOCALE_ARCHIVE="${glibcLocales}/lib/locale/locale-archive"' docs/wxparaver
-  '';
-
-  dontStrip = true;
-  enableParallelBuilding = true;
-
-  preConfigure = ''
-    export CFLAGS="-O3"
-    export CXXFLAGS="-O3"
-  '';
-
-  configureFlags = [
-    "--with-boost=${boost}"
-    "--with-wx-config=${wx}/bin/wx-config"
-    "--with-paraver=${paraverKernel}"
-    "--with-openssl=${openssl.dev}"
-  ];
-
-  nativeBuildInputs = [
-    autoconf
-    automake
-    autoreconfHook
-    wrapGAppsHook
-  ];
-
-  buildInputs = [
-    boost
-    libxml2.dev
-    xml2
-    wx
-    paraverKernel
-    openssl.dev
-  ];
-
-  postInstall = ''
-    mkdir -p $out/include
-    mkdir -p $out/lib/paraver-kernel
-    mkdir -p $out/share/filters-config
-    cp -p ${paraverKernel}/bin/* $out/bin
-    # cp -p ${paraverKernel}/include/* $out/include
-    cp -a ${paraverKernel}/lib/paraver-kernel $out/lib/paraver-kernel
-    cp -p ${paraverKernel}/share/filters-config/* $out/share/filters-config
-
-    # Move man files to proper location
-    mkdir -p $out/share/man
-    mv $out/share/doc/wxparaver_help_contents/man $out/share/man/man1
-  '';
-
-  meta = {
-    homepage = "https://tools.bsc.es/paraver";
-    downloadPage = "https://github.com/bsc-performance-tools/wxparaver";
-    description = "Performance analyzer based on event traces";
-    longDescription = ''
-      Trace-based visualization and analysis tool designed to study quantitative
-      detailed metrics and obtain qualitative knowledge of the performance of
-      applications, libraries, processors and whole architectures
-    '';
-    maintainers = with lib.maintainers.bsc; [ rarias ];
-    platforms = lib.platforms.linux;
-    license = lib.licenses.lgpl21Plus;
-  };
-}

pkgs/paraver/do-not-steal-focus-on-redraw.patch

@@ -1,26 +0,0 @@
-From 2b185e1b5ce52808b3026334851dbcd5a640ed4d Mon Sep 17 00:00:00 2001
-From: aleixbonerib <aleix.boneribo@bsc.es>
-Date: Mon, 10 Jun 2024 20:59:45 +0200
-Subject: [PATCH] fix: do not set focus on redraw
-
-Some wm can change the window size without focusing. Right now, when the
-plot is resized it takes back focus.
----
- src/gtimeline.cpp | 1 -
- 1 file changed, 1 deletion(-)
-
-diff --git a/src/gtimeline.cpp b/src/gtimeline.cpp
-index 23ebef2..a896066 100644
---- a/src/gtimeline.cpp
-+++ b/src/gtimeline.cpp
-@@ -899,7 +899,6 @@ void gTimeline::redraw()
- 
-   drawZone->Refresh();
- 
--  SetFocus();
- }
- 
- 
--- 
-2.44.1
-

pkgs/paraver/dont-expand-colors.patch

@@ -1,120 +0,0 @@
-commit c2fa29f7f1bbde86f41417b198610253fff93667
-Author: Rodrigo Arias <rodarima@gmail.com>
-Date:   Thu Mar 2 13:14:56 2023 +0100
-
-    Add the PCF option DONT_EXPAND_COLORS
-    
-    Allows the user to specify the complete palette in the PCF, preventing
-    Paraver from expanding the colors.
-
-diff --git a/api/semanticcolor.cpp b/api/semanticcolor.cpp
-index 9f86960..22859eb 100644
---- a/api/semanticcolor.cpp
-+++ b/api/semanticcolor.cpp
-@@ -295,8 +295,9 @@ rgb SemanticColor::getColor( PRV_UINT32 pos ) const
- {
-   if( pos == 0 && ParaverConfig::getInstance()->getColorsTimelineUseZero() )
-     return ParaverConfig::getInstance()->getColorsTimelineColorZero();
--  pos = pos % colors.size();
--  return colors[ pos ];
-+  // Skip the black at 0
-+  pos = pos % (colors.size() - 1);
-+  return colors[ pos + 1 ];
- }
- 
- void SemanticColor::setColor( PRV_UINT32 whichPos, rgb whichColor )
-@@ -314,6 +315,12 @@ void SemanticColor::setColor( PRV_UINT32 whichPos, rgb whichColor )
-   colors[ whichPos ] = whichColor;
- }
- 
-+void SemanticColor::cutAfter( PRV_UINT32 pos )
-+{
-+  if ( pos < colors.size() )
-+    colors.erase( colors.begin() + pos, colors.end() );
-+}
-+
- void SemanticColor::setCustomColor( TSemanticValue whichValue, rgb color ) 
- {
-   customPalette[ whichValue ] = color;
-diff --git a/api/semanticcolor.h b/api/semanticcolor.h
-index a079556..bddf3d8 100644
---- a/api/semanticcolor.h
-+++ b/api/semanticcolor.h
-@@ -114,6 +114,7 @@ class SemanticColor
-     // Code Color methods
-     PRV_UINT32 getNumColors() const;
-     void setColor( PRV_UINT32 pos, rgb color );
-+    void cutAfter( PRV_UINT32 pos );
-     void setCustomColor( TSemanticValue whichValue, rgb color );
-     bool existCustomColors() const;
-     const std::map<TSemanticValue, rgb>& getCustomPalette() const;
-diff --git a/api/trace.cpp b/api/trace.cpp
-index b0d2050..ee2ab69 100644
---- a/api/trace.cpp
-+++ b/api/trace.cpp
-@@ -461,12 +461,21 @@ void TraceProxy::parsePCF( const string& whichFile )
- 
-   rgb tmpColor;
-   const std::map< uint32_t, PCFFileParser<>::rgb >& semanticColors = pcfParser.getSemanticColors();
-+  uint32_t maxValue = 0;
-+
-   for ( auto it : semanticColors )
-   {
-     std::tie( tmpColor.red, tmpColor.green, tmpColor.blue ) = it.second;
-     mySemanticColor.setColor( it.first, tmpColor );
-+	if (it.first > maxValue)
-+      maxValue = it.first;
-   }
- 
-+  // Cut the palette after the highest defined value, so there are no
-+  // extra expanded values
-+  if ( !pcfParser.expandColors )
-+	mySemanticColor.cutAfter(maxValue);
-+
-   myEventLabels = EventLabels( pcfParser );
-   myStateLabels = StateLabels( pcfParser );
- 
-diff --git a/utils/traceparser/pcffileparser.cpp b/utils/traceparser/pcffileparser.cpp
-index 9245955..3a1aecb 100644
---- a/utils/traceparser/pcffileparser.cpp
-+++ b/utils/traceparser/pcffileparser.cpp
-@@ -286,6 +286,7 @@ constexpr char PCF_LABEL_SPEED[]               = "SPEED";
- constexpr char PCF_LABEL_FLAG_ICONS[]          = "FLAG_ICONS";
- constexpr char PCF_LABEL_NUM_OF_STATE_COLORS[] = "NUM_OF_STATE_COLORS";
- constexpr char PCF_LABEL_YMAX_SCALE[]          = "YMAX_SCALE";
-+constexpr char PCF_LABEL_DONT_EXPAND_COLORS[]  = "DONT_EXPAND_COLORS";
- 
- template< typename dummyParser = std::nullptr_t >
- class DefaultOptionsParser : public PCFFileParser<>::SectionParser<>
-@@ -293,12 +294,13 @@ class DefaultOptionsParser : public PCFFileParser<>::SectionParser<>
-   public:
-     DefaultOptionsParser( PCFFileParser<> *whichMainParser ) : PCFFileParser<>::SectionParser<>( whichMainParser ) 
-     {
--      parameterSetter[ PCF_LABEL_LEVEL ]      = [this]( std::string line ) { mainParser->level = line; };
--      parameterSetter[ PCF_LABEL_UNITS ]      = [this]( std::string line ) { mainParser->units = line; };
--      parameterSetter[ PCF_LABEL_LOOK_BACK ]  = [this]( std::string line ) { mainParser->lookBack = line; };
--      parameterSetter[ PCF_LABEL_SPEED ]      = [this]( std::string line ) { mainParser->speed = line; };
--      parameterSetter[ PCF_LABEL_FLAG_ICONS ] = [this]( std::string line ) { mainParser->flagIcons = line; };
--      parameterSetter[ PCF_LABEL_YMAX_SCALE ] = [this]( std::string line ) { mainParser->ymaxScale = line; };
-+      parameterSetter[ PCF_LABEL_LEVEL ]              = [this]( std::string line ) { mainParser->level = line; };
-+      parameterSetter[ PCF_LABEL_UNITS ]              = [this]( std::string line ) { mainParser->units = line; };
-+      parameterSetter[ PCF_LABEL_LOOK_BACK ]          = [this]( std::string line ) { mainParser->lookBack = line; };
-+      parameterSetter[ PCF_LABEL_SPEED ]              = [this]( std::string line ) { mainParser->speed = line; };
-+      parameterSetter[ PCF_LABEL_FLAG_ICONS ]         = [this]( std::string line ) { mainParser->flagIcons = line; };
-+      parameterSetter[ PCF_LABEL_YMAX_SCALE ]         = [this]( std::string line ) { mainParser->ymaxScale = line; };
-+      parameterSetter[ PCF_LABEL_DONT_EXPAND_COLORS ] = [this]( std::string line ) { mainParser->expandColors = false; };
-     }
- 
-     virtual ~DefaultOptionsParser() = default;
-diff --git a/utils/traceparser/pcffileparser.h b/utils/traceparser/pcffileparser.h
-index 5fe2634..c12ecc8 100644
---- a/utils/traceparser/pcffileparser.h
-+++ b/utils/traceparser/pcffileparser.h
-@@ -100,6 +100,7 @@ class PCFFileParser
-     void setEventLabel( TEventType eventType, const std::string& label );
-     void setEventValues( TEventType eventType, const std::map< TEventValue, std::string >& values );
-     void setEventValueLabel( TEventType eventType, TEventValue eventValue, const std::string& label );
-+    bool expandColors = true;
- 
-   private:
-     struct EventTypeData

pkgs/paraver/fix-boost-87.patch

@@ -1,87 +0,0 @@
-From 7ecd888e2ebb9e8c5582851d3c50bff61022708e Mon Sep 17 00:00:00 2001
-From: =?UTF-8?q?Joan=20Bruguera=20Mic=C3=B3?= <joanbrugueram@gmail.com>
-Date: Sat, 29 Mar 2025 18:14:25 +0000
-Subject: [PATCH] tutorialsdownload: Fix Boost ASIO 1.87.0 removals
-
----
- src/tutorialsdownload.cpp | 25 ++++++++++++-------------
- 1 file changed, 12 insertions(+), 13 deletions(-)
-
-diff --git a/src/tutorialsdownload.cpp b/src/tutorialsdownload.cpp
-index a1921fd..6ce9dc2 100644
---- a/src/tutorialsdownload.cpp
-+++ b/src/tutorialsdownload.cpp
-@@ -121,13 +121,13 @@ void TutorialsProgress::updateInstall( int whichValue )
- class client
- {
-   public:
--    client( boost::asio::io_service& io_service,
-+    client( boost::asio::io_context& io_context,
-             boost::asio::ssl::context& context,
-             const std::string& server, const std::string& path,
-             ofstream& storeFile,
-             TutorialsProgress *progress )
--            : resolver_( io_service ),
--              socket_( io_service, context ),
-+            : resolver_( io_context ),
-+              socket_( io_context, context ),
-               store_( storeFile ),
-               progress_( progress )
-     {
-@@ -143,8 +143,7 @@ class client
- 
-         // Start an asynchronous resolve to translate the server and service names
-         // into a list of endpoints.
--        tcp::resolver::query query( server, "https" );
--        resolver_.async_resolve( query,
-+        resolver_.async_resolve( server, "https",
-                                  boost::bind( &client::handle_resolve,
-                                               this,
-                                               boost::asio::placeholders::error,
-@@ -154,7 +153,7 @@ class client
-   private:
- 
-     void handle_resolve( const boost::system::error_code& err,
--                         tcp::resolver::iterator endpoint_iterator )
-+                         const tcp::resolver::results_type& endpoints )
-     {
-       if ( !err )
-       {
-@@ -162,7 +161,7 @@ class client
-         socket_.set_verify_callback( boost::bind( &client::verify_certificate, this, _1, _2 ) );
- 
-         boost::asio::async_connect( socket_.lowest_layer(), 
--                                    endpoint_iterator,
-+                                    endpoints,
-                                     boost::bind( &client::handle_connect, 
-                                                  this,
-                                                  boost::asio::placeholders::error ) );
-@@ -536,9 +535,9 @@ bool TutorialsDownload::downloadTutorialsList() const
-     boost::asio::ssl::context ctx( boost::asio::ssl::context::sslv23 );
-     ctx.set_default_verify_paths();
- 
--    boost::asio::io_service io_service;
--    client c( io_service, ctx, server, path, storeFile, nullptr );
--    io_service.run();
-+    boost::asio::io_context io_context;
-+    client c( io_context, ctx, server, path, storeFile, nullptr );
-+    io_context.run();
- 
-     doneDownload = true;
-   }
-@@ -580,9 +579,9 @@ bool TutorialsDownload::download( const TutorialData& whichTutorial, string& tut
-     boost::asio::ssl::context ctx( boost::asio::ssl::context::sslv23 );
-     ctx.set_default_verify_paths();
- 
--    boost::asio::io_service io_service;
--    client c( io_service, ctx, std::string( server.mb_str() ), std::string( path.mb_str() ), storeFile, &progress );
--    io_service.run();
-+    boost::asio::io_context io_context;
-+    client c( io_context, ctx, std::string( server.mb_str() ), std::string( path.mb_str() ), storeFile, &progress );
-+    io_context.run();
-   }
-   catch ( ParaverKernelException& e )
-   {
--- 
-2.49.0
-

pkgs/paraver/fix-libxml2-deprecation.patch

@@ -1,23 +0,0 @@
-commit 60aa3ffa05f6b40db191a880e9e622d608744c1f
-Author: Aleix Boné <aleix.boneribo@bsc.es>
-Date:   Sun Jul 21 12:11:30 2025 +0200
-
-    fix libxml2 deprecated macro
-
-diff --git a/configure.ac b/configure.ac
-index 7fe1876..3ce1091 100644
---- a/configure.ac
-+++ b/configure.ac
-@@ -46,7 +46,10 @@ AC_PROG_CPP
- AC_PROG_CXXCPP
- AC_PROG_SED
- 
--AM_PATH_XML2
-+PKG_PROG_PKG_CONFIG
-+PKG_CHECK_MODULES([XML], [libxml-2.0])
-+
-+AC_SUBST(XML_CPPFLAGS, $XML_CFLAGS)
- 
- AX_BOOST_BASE(1.36)
- AX_BOOST_SERIALIZATION
-

pkgs/paraver/kernel.nix

@@ -1,70 +0,0 @@
-{
-  stdenv
-, lib
-, fetchFromGitHub
-, autoreconfHook
-, boost
-, libxml2
-, xml2
-, autoconf
-, automake
-, pkg-config
-, zlib
-}:
-
-stdenv.mkDerivation rec {
-  pname = "paraver-kernel";
-  version = "4.12.0";
-
-  src = fetchFromGitHub {
-    owner = "bsc-performance-tools";
-    repo = "paraver-kernel";
-    rev = "v${version}";
-    sha256 = "sha256-Xs7g8ITZhPt00v7o2WlTddbou8C8Rc9kBMFpl2WsCS4=";
-  };
-
-  patches = [
-    # https://github.com/bsc-performance-tools/paraver-kernel/pull/11
-    # TODO: add this back if it's still relevant
-    # ./dont-expand-colors.patch
-    ./fix-libxml2-deprecation.patch
-  ];
-
-  hardeningDisable = [ "all" ];
-  enableParallelBuilding = true;
-
-  dontStrip = true;
-
-  preConfigure = ''
-    export CFLAGS="-O3 -DPARALLEL_ENABLED"
-    export CXXFLAGS="-O3 -DPARALLEL_ENABLED"
-  '';
-
-  configureFlags = [
-    "--with-boost=${boost}"
-    "--enable-openmp"
-  ];
-
-  nativeBuildInputs = [
-    autoreconfHook
-    autoconf
-    automake
-    pkg-config
-  ];
-
-  buildInputs = [
-    boost
-    libxml2.dev
-    xml2
-    zlib
-  ];
-
-  meta = {
-    homepage = "https://tools.bsc.es/paraver";
-    downloadPage = "https://github.com/bsc-performance-tools/paraver-kernel";
-    description = "Kernel library used by wxparaver";
-    maintainers = with lib.maintainers.bsc; [ rarias ];
-    platforms = lib.platforms.linux;
-    license = lib.licenses.lgpl21Plus;
-  };
-}

pkgs/paraver/mouse-label.patch

@@ -1,286 +0,0 @@
---- a/src/wxparaver/src/gtimeline.cpp	2019-09-13 13:18:03.000000000 +0200
-+++ b/src/wxparaver/src/gtimeline.cpp	2020-11-30 13:18:50.121429888 +0100
-@@ -607,8 +607,8 @@
-   // Paint blank image while redrawing
-   wxClientDC dc( drawZone );
- #ifdef __WXGTK__
--  dc.DrawBitmap( bufferImage, 0, 0, false );
--  drawZone->Update();
-+//  dc.DrawBitmap( bufferImage, 0, 0, false );
-+//  drawZone->Update();
- #endif
- 
-   if( !drawAxis( bufferDraw, selectedSet ) )
-@@ -1365,13 +1365,66 @@
- 
- void gTimeline::drawRowEvents( wxDC& eventdc, wxDC& eventmaskdc, TObjectOrder rowPos, hash_set< PRV_INT32 >& eventsToDraw )
- {
-+    int last_x = -100, x, xx;
-+    int i, neigh, max_x;
-+
-+    /* Keep track of other events in nearby pixels */
-+    max_x = myWindow->getWidth();
-+    int *table = new int[max_x];
-+
-+    for(i=0; i<max_x; i++)
-+    {
-+        table[i] = 0;
-+    }
-+
-   for( hash_set< PRV_INT32 >::iterator it = eventsToDraw.begin(); it != eventsToDraw.end(); ++it )
-   {
-+    /* Add a new event in the x position in the table */
-+      x = *it;
-+      assert(0 <= x);
-+      assert(x < max_x);
-+      table[*it]++;
-+  }
-+
-+  for( hash_set< PRV_INT32 >::iterator it = eventsToDraw.begin(); it != eventsToDraw.end(); ++it )
-+  {
-+      /*
-+       * Draws an event with 4 segments: AE, BF, CG and DH
-+       *         
-+       *        A B C D
-+       *        * * * *
-+       *        * * * *
-+       *        * * * *
-+       *        * F G H
-+       *        *
-+       *        *
-+       *        E
-+       */
-+
-+    /* If the event is very close to another one, we paint it red, so we
-+     * now that we may need to zoom to see more closely how many events
-+     * are there. Otherwise we paint it green. */
-+    x = *it;
-+
-+    /* Count neighbour events */
-+    neigh = 0;
-+    for(xx=x-5; xx<=x+5; xx++)
-+    {
-+        if(0 <= xx && xx < max_x)
-+            neigh += table[xx];
-+    }
-+
-+    /* Paint the event red if there are more events close */
-+    if(neigh > 1)
-+        eventdc.SetPen( *wxRED_PEN );
-+    else
-+        eventdc.SetPen( *wxGREEN_PEN );
-+
-     eventdc.DrawLine( *it, rowPos - 6, *it, rowPos );
--    eventdc.DrawLine( *it+1, rowPos - 6, *it+1, rowPos-3 );
--    eventdc.DrawLine( *it+2, rowPos - 6, *it+2, rowPos-3 );
--    eventdc.DrawLine( *it+3, rowPos - 6, *it+3, rowPos-3 );
--    eventdc.DrawLine( *it+4, rowPos - 6, *it+4, rowPos-3 );
-+//    eventdc.DrawLine( *it+1, rowPos - 6, *it+1, rowPos-3 );
-+//    eventdc.DrawLine( *it+2, rowPos - 6, *it+2, rowPos-3 );
-+//    eventdc.DrawLine( *it+3, rowPos - 6, *it+3, rowPos-3 );
-+//    eventdc.DrawLine( *it+4, rowPos - 6, *it+4, rowPos-3 );
- #ifndef __WXMAC__
-     eventmaskdc.DrawLine( *it, rowPos - 6, *it, rowPos );
-     eventmaskdc.DrawLine( *it+1, rowPos - 6, *it+1, rowPos-3 );
-@@ -1379,8 +1432,12 @@
-     eventmaskdc.DrawLine( *it+3, rowPos - 6, *it+3, rowPos-3 );
-     eventmaskdc.DrawLine( *it+4, rowPos - 6, *it+4, rowPos-3 );
- #endif
-+
-+    last_x = x;
-   }
- 
-+  delete table;
-+
- }
- 
- 
-@@ -2427,7 +2484,7 @@
- 
-   motionEvent = event;
-   if( !event.ShiftDown() )
--    timerMotion->Start( 20, true );
-+    timerMotion->Start( 2, true );
- 
-   wxMemoryDC dc( bufferImage );
-   // PRV_UINT32 precision = ParaverConfig::getInstance()->getTimelinePrecision();
-@@ -4651,12 +4708,18 @@
- 
- void gTimeline::OnTimerMotion( wxTimerEvent& event )
- {
-+  int mx, my;
-+
-+  mx = motionEvent.GetX();
-+  my = motionEvent.GetY();
-+
-   if( motionEvent.GetX() < objectAxisPos + 1 || motionEvent.GetX() > bufferImage.GetWidth() - drawBorder ||
-       motionEvent.GetY() < drawBorder || motionEvent.GetY() > timeAxisPos - 1 )
-     return;
- 
-   wxMemoryDC dc( bufferImage );
-   wxColour tmpColor;
-+  wxClientDC paintDC( drawZone );
- 
-   wxString label;
-   if( zooming || timing || wxGetApp().GetGlobalTiming() )
-@@ -4704,7 +4767,11 @@
- #endif
- 
-     if( tmpColor == backgroundColour )
-+    {
-+      /* Just clean and exit */
-+      paintDC.DrawBitmap( drawImage, 0, 0 );
-       return;
-+    }
- 
-     rgb color = { (ParaverColor)tmpColor.Red(), (ParaverColor)tmpColor.Green(), (ParaverColor)tmpColor.Blue() };
-     TSemanticValue firstValue, secondValue;
-@@ -4762,38 +4829,109 @@
-     }
-   }
- 
--#ifndef __WXGTK__
--  wxClientDC paintDC( drawZone );
--  #ifdef __WXMAC__
--  drawStackedImages( paintDC );
--  #else
--  paintDC.DrawBitmap( drawImage, 0, 0 );
--  #endif
--#else
--  #if wxMAJOR_VERSION<3
--  wxPaintDC paintDC( drawZone );
--  #else
--  wxClientDC paintDC( drawZone );
--  #endif
--  paintDC.DrawBitmap( drawImage, 0, 0 );
--#endif
--
-   paintDC.SetFont( semanticFont );
-+  paintDC.SetPen( backgroundColour );
-+  paintDC.SetBrush( backgroundColour );
-+  paintDC.SetTextForeground( foregroundColour );
-+
-+  /* Draw the label close to the mouse, so it's easier to follow */
-+  int label_x0, label_y0;
-+  label_x0 = mx + 20;
-+  label_y0 = my + 20;
-+  paintDC.SetPen( *wxBLACK_PEN );
-+  paintDC.SetBrush( *wxBLACK_BRUSH );
-+
-+  /* Draw a filled black rectangle behind the label, so is easy to read
-+   * when placed over multiple colors from the trace */
-+  int rect_x0, rect_y0, rect_w, rect_h;
-+  rect_x0 = label_x0 - 5;
-+  rect_y0 = label_y0 - 5;
-+
-+  TObjectOrder row;
-+  TTime time;
-+
-+  /* Fills "row" and "time" objects if is over a TimeObject (?) */
-+  bool print_duration = true;
-+  double tp, tn;
-+
-+  /* This whole thing to get the event is completely crap. We may get a
-+   * pixel here that belong to a different event, probably due to
-+   * rounding operations when dealing with time.
-+   *
-+   * To avoid giving misleading information, we only print the time when
-+   * both neighbour pixels are also from the same event */
-+  print_duration &= pixelToTimeObject(mx, my, time, row);
-+  print_duration &= pixelToTimeObject(mx-2, my, tp, row);
-+  print_duration &= pixelToTimeObject(mx+2, my, tn, row);
-+
-+  if(time <= tp) print_duration = false;
-+  if(tn <= time) print_duration = false;
-+
-+  //computeWhatWhere(time, row, 0.0, false, false);
-+
-+  //printf("time = %e\n", time);
-+  //printf("begin time = %e\n", myWindow->getBeginTime(row));
-+
-+  if(print_duration)
-+  {
-+    double t0, t1, t, dt;
-+    t = time;
-+
-+    myWindow->init(t, CREATEEVENTS + CREATECOMMS, false );
-+    myWindow->initRow(row, t, CREATEEVENTS + CREATECOMMS, false );
-+
-+    t0 = myWindow->getBeginTime(row);
-+    t1 = myWindow->getEndTime(row);
-+
-+    //printf("t0=%e t=%e t1=%e\n", t0, t, t1);
-+    while(!(t0 <= t && t <= t1))
-+    {
-+      myWindow->calcNext(row);
-+      t0 = myWindow->getBeginTime(row);
-+      t1 = myWindow->getEndTime(row);
-+      //printf("t0=%e t=%e t1=%e\n", t0, t, t1);
-+      if(t0 > t)
-+      {
-+        //printf("we are out\n");
-+        break;
-+      }
-+    }
-+
-+    /* Only add the duration if we are more than one pixel away from the
-+     * border */
-+    if(t0 < tp && tn < t1)
-+    {
-+        if(t0 > t)
-+            dt = 0;
-+        else
-+            dt = t1 - t0;
-+
-+        assert(t0 <= time);
-+        assert(time <= t1);
-+
-+        wxString duration = wxString::FromAscii( LabelConstructor::timeLabel(
-+                    myWindow->traceUnitsToWindowUnits( dt ),
-+                    myWindow->getTimeUnit(), 
-+                    ParaverConfig::getInstance()->getTimelinePrecision() ).c_str() );
-+
-+        label << wxT( " (" ) <<  duration << wxT(")");
-+    }
-+  }
-+
-   wxSize objectExt = paintDC.GetTextExtent( label );
-+  rect_w = objectExt.GetWidth() + 10;
-+  rect_h = objectExt.GetHeight() + 10;
-+
-+  /* Erase previous bitmap */
-+  paintDC.DrawBitmap( drawImage, 0, 0 );
-+
-+  /* Draw black rectangle */
-+  paintDC.DrawRectangle( rect_x0, rect_y0, rect_w, rect_h );
- 
-+  /* Then place the label */
-+  paintDC.DrawText( label, label_x0, label_y0);
-   paintDC.SetPen( backgroundColour );
-   paintDC.SetBrush( backgroundColour );
--//  paintDC.DrawRectangle( ( bufferImage.GetWidth() - objectAxisPos ) / 2, timeAxisPos + 1, objectExt.GetWidth() + 30, bufferImage.GetHeight() - timeAxisPos );
--  if( !( zooming || timing || wxGetApp().GetGlobalTiming() ) )
--  {
--    paintDC.SetBrush( tmpColor );
--    paintDC.DrawRectangle( ( bufferImage.GetWidth() - objectAxisPos ) / 2, timeAxisPos + 2, 10, bufferImage.GetHeight() - timeAxisPos - 3 );
--  }
--  paintDC.SetTextForeground( foregroundColour );
--  if( zooming )
--    paintDC.DrawText( label, ( bufferImage.GetWidth() - objectAxisPos ) / 2 + objectAxisPos - ( objectExt.GetWidth() / 2 ), timeAxisPos + 3 );
--  else
--    paintDC.DrawText( label, ( bufferImage.GetWidth() - objectAxisPos ) / 2 + 12, timeAxisPos + 3 );
- }
- 
- void gTimeline::OnTimerWheel( wxTimerEvent& event )
-@@ -5075,7 +5213,11 @@
-   endRow = TObjectOrder( floor( ( y - drawBorder - 1 ) / heightPerRow ) );
- 
-   if( endRow >= numObjects )
-+  {
-     endRow = numObjects - 1;
-+    printf("endRow exceeds numObjects, capped to %d\n", endRow);
-+  }
-+  //printf("endRow = %d\n", endRow);
-   onObject = selected[ endRow ];
- 
-   return true;

pkgs/paraver/release.nix

@@ -1,77 +0,0 @@
-{
-  stdenv
-, lib
-, fetchFromGitHub
-, boost
-, libxml2
-, xml2
-, fetchurl
-, wxGTK32
-, autoconf
-, automake
-, openssl # For boost
-# Custom patches :)
-, enableMouseLabel ? false
-}:
-
-with lib;
-
-let
-  wx = wxGTK32;
-in
-stdenv.mkDerivation rec {
-  pname = "wxparaver";
-  version = "4.10.6";
-
-  src = fetchurl {
-    url = "https://ftp.tools.bsc.es/wxparaver/wxparaver-${version}-src.tar.bz2";
-    sha256 = "a7L15viCXtQS9vAsdFzCFlUavUzl4Y0yOYmVSCrdWBU=";
-  };
-
-  patches = []
-    ++ optional (enableMouseLabel) ./mouse-label.patch;
-
-  enableParallelBuilding = true;
-
-  # What would we do without the great gamezelda:
-  # https://aur.archlinux.org/cgit/aur.git/tree/PKGBUILD?h=wxparaver
-  postPatch = ''
-    pushd src/wxparaver
-      sed -i \
-	  -e 's|-lparaver-api -lparaver-kernel|-L../../paraver-kernel/src/.libs -L../../paraver-kernel/api/.libs -lparaver-api -lparaver-kernel -lssl -lcrypto -ldl|g' \
-	  -e '$awxparaver_bin_CXXFLAGS = @CXXFLAGS@ -I../../paraver-kernel -I../../paraver-kernel/api' \
-	  src/Makefile.am
-
-      sed -i 's| -L$PARAVER_LIBDIR||g' configure.ac
-    popd
-
-    # Patch shebang as /usr/bin/env is missing in nix
-    sed -i '1c#!/bin/sh' src/paraver-cfgs/install.sh
-  '';
-  #TODO: Move the sed commands to proper patches (and maybe send them upstream?)
-
-  preConfigure = ''
-    pushd src/wxparaver
-      autoreconf -i -f
-    popd
-  '';
-
-  configureFlags = [
-    "--with-boost=${boost}"
-    "--with-wx-config=${wx}/bin/wx-config"
-  ];
-
-  nativeBuildInputs = [
-    autoconf
-    automake
-  ];
-
-  buildInputs = [
-    boost
-    xml2
-    libxml2.dev
-    wx
-    openssl.dev
-  ];
-
-}

pkgs/paraver/wxparaver.nix

@@ -1,47 +0,0 @@
-{
-  stdenv
-, fetchFromGitHub
-, boost
-, libxml2
-, xml2
-, fetchurl
-, wxGTK30-gtk3
-, paraver-kernel
-}:
-
-let
-  wx = wxGTK30-gtk3;
-in
-stdenv.mkDerivation rec {
-  pname = "wxparaver";
-  version = "4.8.2";
-
-  src = fetchurl {
-    url = "https://ftp.tools.bsc.es/wxparaver/wxparaver-${version}-src.tar.bz2";
-    sha256 = "0b8rrhnf7h8j72pj6nrxkrbskgg9b5w60nxi47nxg6275qvfq8hd";
-  };
-
-  postUnpack = "sourceRoot=$sourceRoot/src/wxparaver";
-  enableParallelBuilding = true;
-
-  preConfigure = ''
-    configureFlagsArray=(
-      "--with-boost=${boost}"
-      "--with-wx-config=${wx}/bin/wx-config"
-      --with-wxpropgrid-dir=
-      "--with-paraver=${paraver-kernel}"
-      "--enable-debug=yes"
-      "CXXFLAGS=-g"
-      "CFLAGS=-g"
-    )
-  '';
-
-  buildInputs = [
-    boost
-    xml2
-    libxml2.dev
-    wx
-    paraver-kernel
-  ];
-
-}

pkgs/slurm/16.05.8.1/common-env-echo.patch

@@ -1,13 +0,0 @@
-diff --git a/src/common/env.c b/src/common/env.c
-index 987846d..73d3b3b 100644
---- a/src/common/env.c
-+++ b/src/common/env.c
-@@ -1941,7 +1941,7 @@ char **env_array_user_default(const char *username, int timeout, int mode,
- 	char **env = NULL;
- 	char *starttoken = "XXXXSLURMSTARTPARSINGHEREXXXX";
- 	char *stoptoken  = "XXXXSLURMSTOPPARSINGHEREXXXXX";
--	char cmdstr[256], *env_loc = NULL;
-+	char cmdstr[MAXPATHLEN], *env_loc = NULL;
- 	char *stepd_path = NULL;
- 	int fd1, fd2, fildes[2], found, fval, len, rc, timeleft;
- 	int buf_read, buf_rem, config_timeout;

pkgs/slurm/16.05.8.1/default.nix

@@ -1,87 +0,0 @@
-{ stdenv, lib, fetchFromGitHub, pkg-config, libtool, curl
-, python3, munge, perl, pam, zlib, shadow, coreutils
-, ncurses, libmysqlclient, lua, hwloc, numactl
-, readline, freeipmi, xorg, lz4, rdma-core, nixosTests
-, pmix, enableX11 ? false
-}:
-
-stdenv.mkDerivation rec {
-  pname = "slurm";
-  version = "16.05.8.1";
-
-  # N.B. We use github release tags instead of https://www.schedmd.com/downloads.php
-  # because the latter does not keep older releases.
-  src = fetchFromGitHub {
-    owner = "SchedMD";
-    repo = "slurm";
-    # The release tags use - instead of .
-    rev = "${pname}-${builtins.replaceStrings ["."] ["-"] version}";
-    sha256 = "1fkrbi4f22jb2pq19sv3j2yyvac4nh25fk8mzw6ic24swxp8wq9s";
-  };
-
-  outputs = [ "out" "dev" ];
-
-  patches = [
-    ./major.patch
-    ./mvwprintw.patch
-    # increase string length to allow for full
-    # path of 'echo' in nix store
-    #./common-env-echo.patch
-    # Required for configure to pick up the right dlopen path
-    #./pmix-configure.patch
-  ];
-
-  prePatch = ''
-    substituteInPlace src/common/env.c \
-        --replace "/bin/echo" "${coreutils}/bin/echo"
-  '';
-
-  # nixos test fails to start slurmd with 'undefined symbol: slurm_job_preempt_mode'
-  # https://groups.google.com/forum/#!topic/slurm-devel/QHOajQ84_Es
-  # this doesn't fix tests completely at least makes slurmd to launch
-  hardeningDisable = [ "fortify" "bindnow" ];
-
-  nativeBuildInputs = [ pkg-config libtool python3 ];
-  buildInputs = [
-    curl python3 munge perl pam zlib
-      libmysqlclient ncurses lz4 rdma-core
-      lua hwloc numactl readline freeipmi shadow.su
-      pmix
-  ];
-
-  configureFlags = [
-    "CFLAGS=-fcommon"
-    "--with-freeipmi=${freeipmi}"
-    "--with-hwloc=${hwloc}"
-    "--with-lz4=${lz4.dev}"
-    "--with-munge=${munge}"
-    "--with-zlib=${zlib}"
-    "--with-ofed=${rdma-core}"
-    "--sysconfdir=/etc/slurm"
-    "--with-pmix=${pmix}"
-    "--disable-gtktest"
-    "--disable-x11"
-  ];
-
-
-  preConfigure = ''
-    patchShebangs ./doc/html/shtml2html.py
-    patchShebangs ./doc/man/man2html.py
-  '';
-
-  postInstall = ''
-    rm -f $out/lib/*.la $out/lib/slurm/*.la
-  '';
-
-  enableParallelBuilding = true;
-
-  passthru.tests.slurm = nixosTests.slurm;
-
-  meta = with lib; {
-    homepage = "http://www.schedmd.com/";
-    description = "Simple Linux Utility for Resource Management";
-    platforms = platforms.linux;
-    license = licenses.gpl2;
-    maintainers = with maintainers; [ jagajaga markuskowa ];
-  };
-}

pkgs/slurm/16.05.8.1/major.patch

@@ -1,10 +0,0 @@
---- a/src/plugins/task/cgroup/task_cgroup_devices.c	1970-01-01 01:00:01.000000000 +0100
-+++ b/src/plugins/task/cgroup/task_cgroup_devices.c	1970-01-01 01:00:01.000000000 +0100
-@@ -43,6 +43,7 @@
- #include <glob.h>
- #include <sys/types.h>
- #include <sys/stat.h>
-+#include <sys/sysmacros.h>
- #include <slurm/slurm.h>
- #include <slurm/slurm_errno.h>
- #include "src/common/xstring.h"

pkgs/slurm/16.05.8.1/mvwprintw.patch

@@ -1,11 +0,0 @@
---- a/src/smap/partition_functions.c	2023-04-02 21:07:54.505816546 +0200
-+++ b/src/smap/partition_functions.c	2023-04-02 21:07:43.512816197 +0200
-@@ -588,7 +588,7 @@
- 				else
- 					tmp_state = "unk";
- 				mvwprintw(text_win, main_ycord, main_xcord,
--					  tmp_state);
-+					  "%s", tmp_state);
- 				main_xcord += 7;
- 
- 				if (part_ptr->max_time == INFINITE)

pkgs/slurm/16.05.8.1/pmi2.nix

@@ -1,22 +0,0 @@
-{
-  stdenv
-, slurm
-}:
-
-stdenv.mkDerivation rec {
-  name = "pmi2-${version}";
-
-  inherit (slurm) src version prePatch nativeBuildInputs buildInputs
-    configureFlags preConfigure;
-
-  # Only build the pmi2 library
-  preBuild = ''cd contribs/pmi2'';
-
-  # Include also the pmi.h header
-  postInstall = ''
-    mkdir -p $out/include
-    cp ../../slurm/pmi.h $out/include
-  '';
-
-  enableParallelBuilding = true;
-}

pkgs/slurm/16.05.8.1/pmix-configure.patch

@@ -1,13 +0,0 @@
-diff --git a/configure b/configure
-index 1cf53bc..ab68441 100755
---- a/configure
-+++ b/configure
-@@ -21207,7 +21207,7 @@ rm -f conftest.err conftest.i conftest.$ac_ext
-                 as_fn_error $? "error processing $x_ac_cv_pmix_libdir: PMIx v3.x was already found in one of the previous paths" "$LINENO" 5
-               fi
-               _x_ac_pmix_v3_found="1"
--              PMIX_V3_CPPFLAGS="-I$x_ac_cv_pmix_dir/include"
-+              PMIX_V3_CPPFLAGS="-I$x_ac_cv_pmix_dir/include -DPMIXP_V3_LIBPATH=\\\"$x_ac_cv_pmix_libdir\\\""
-               if test "$ac_with_rpath" = "yes"; then
-                 PMIX_V3_LDFLAGS="-Wl,-rpath -Wl,$x_ac_cv_pmix_libdir -L$x_ac_cv_pmix_libdir"
-               else

pkgs/slurm/default.nix

@@ -1,22 +0,0 @@
-{ slurm }:
-
-slurm.overrideAttrs (old: {
-  patches = (old.patches or []) ++ [
-    # See https://bugs.schedmd.com/show_bug.cgi?id=19324
-    # Still unmerged as of 2025-10-03, another corpo-cancer.
-    ./slurm-rank-expansion.patch
-  ];
-  # Install also the pam_slurm_adopt library to restrict users from accessing
-  # nodes with no job allocated.
-  # TODO: Review pam_slurm_adopt, I don't trust their code much.
-  postBuild = (old.postBuild or "") + ''
-    pushd contribs/pam_slurm_adopt
-      make "PAM_DIR=$out/lib/security"
-    popd
-  '';
-  postInstall = (old.postInstall or "") + ''
-    pushd contribs/pam_slurm_adopt
-      make "PAM_DIR=$out/lib/security" install
-    popd
-  '';
-})

pkgs/slurm/pmi2.nix

@@ -1,82 +0,0 @@
-{ stdenv, lib, fetchFromGitHub, pkg-config, libtool, curl
-, python3, munge, perl, pam, openssl
-, ncurses, libmysqlclient, gtk2, lua, hwloc, numactl
-, readline, freeipmi, libssh2, xorg
-, pmix
-# enable internal X11 support via libssh2
-, enableX11 ? true
-}:
-
-stdenv.mkDerivation rec {
-  name = "slurm-libpmi2-${version}";
-  version = "17.11.9-2";
-
-  # N.B. We use github release tags instead of https://www.schedmd.com/downloads.php
-  # because the latter does not keep older releases.
-  src = fetchFromGitHub {
-    owner = "SchedMD";
-    repo = "slurm";
-    # The release tags use - instead of .
-    rev = "${builtins.replaceStrings ["."] ["-"] name}";
-    sha256 = "1lq4ac6yjai6wh979dciw8v3d99zbd3w36rfh0vpncqm672fg1qy";
-  };
-
-  outputs = [ "out" ];
-
-  prePatch = lib.optional enableX11 ''
-    substituteInPlace src/common/x11_util.c \
-        --replace '"/usr/bin/xauth"' '"${xorg.xauth}/bin/xauth"'
-  '';
-
-  # nixos test fails to start slurmd with 'undefined symbol: slurm_job_preempt_mode'
-  # https://groups.google.com/forum/#!topic/slurm-devel/QHOajQ84_Es
-  # this doesn't fix tests completely at least makes slurmd to launch
-  hardeningDisable = [ "bindnow" ];
-
-  nativeBuildInputs = [ pkg-config libtool ];
-  buildInputs = [
-    curl python3 munge perl pam openssl
-      libmysqlclient ncurses gtk2
-      lua hwloc numactl readline freeipmi
-      pmix
-  ] ++ lib.optionals enableX11 [ libssh2 xorg.xauth ];
-
-  configureFlags = with lib;
-    [ "--with-munge=${munge}"
-      "--with-ssl=${openssl.dev}"
-      "--with-hwloc=${hwloc.dev}"
-      "--with-freeipmi=${freeipmi}"
-      "--sysconfdir=/etc/slurm"
-      "--with-pmix=${pmix}"
-    ] ++ (optional (gtk2 == null)  "--disable-gtktest")
-      ++ (optional enableX11 "--with-libssh2=${libssh2.dev}");
-
-
-  preConfigure = ''
-    patchShebangs ./doc/html/shtml2html.py
-    patchShebangs ./doc/man/man2html.py
-    patchShebangs ./configure
-  '';
-
-  preBuild = ''cd contribs/pmi2'';
-
-  #buildPhase = ''
-  #  pushd contrib/pmi2
-  #    make -j install SHELL=${SHELL}
-  #  popd
-  #'';
-
-  postInstall = ''
-    rm -f $out/lib/*.la $out/lib/slurm/*.la
-  '';
-
-  enableParallelBuilding = true;
-
-  meta = with lib; {
-    homepage = http://www.schedmd.com/;
-    description = "Simple Linux Utility for Resource Management";
-    platforms = platforms.linux;
-    license = licenses.gpl2;
-    maintainers = with maintainers; [ jagajaga markuskowa ];
-  };
-}

pkgs/sonar/default.nix

@@ -1,39 +0,0 @@
-{
-  stdenv
-, lib
-, autoreconfHook
-, fetchFromGitHub
-, ovni
-, mpi
-}:
-
-stdenv.mkDerivation rec {
-  pname = "sonar";
-  version = "1.0.1";
-  src = fetchFromGitHub {
-    owner = "bsc-pm";
-    repo = "sonar";
-    rev = "${version}";
-    sha256 = "sha256-DazOEaiMfJLrZNtmQEEHdBkm/m4hq5e0mPEfMtzYqWk=";
-  };
-  hardeningDisable = [ "all" ];
-  dontStrip = true;
-  configureFlags = [ "--with-ovni=${ovni}" ];
-
-  nativeBuildInputs = [
-    autoreconfHook
-  ];
-
-  buildInputs = [
-    ovni
-    mpi
-  ];
-
-  meta = {
-    homepage = "https://github.com/bsc-pm/sonar";
-    description = "Set of runtime libraries which instrument parallel programming models through the ovni instrumentation library";
-    maintainers = with lib.maintainers.bsc; [ rarias ];
-    platforms = lib.platforms.linux;
-    license = lib.licenses.mit;
-  };
-}

pkgs/tagaspi/default.nix

@@ -1,67 +0,0 @@
-{
-  stdenv
-, lib
-, fetchFromGitHub
-, automake
-, autoconf
-, libtool
-, mpi
-, autoreconfHook
-, gpi-2
-, boost
-, numactl
-, rdma-core
-, gfortran
-, symlinkJoin
-}:
-
-let
-  mpiAll = symlinkJoin {
-    name = "mpi-all";
-    paths = [ mpi.all ];
-  };
-in
-
-stdenv.mkDerivation rec {
-  pname = "tagaspi";
-  enableParallelBuilding = true;
-  separateDebugInfo = true;
-
-  version = "2.0";
-  src = fetchFromGitHub {
-    owner = "bsc-pm";
-    repo = "tagaspi";
-    rev = "v${version}";
-    hash = "sha256-RGG/Re2uM293HduZfGzKUWioDtwnSYYdfeG9pVrX9EM=";
-  };
-
-  buildInputs = [
-    autoreconfHook
-    automake
-    autoconf
-    libtool
-    boost
-    numactl
-    rdma-core
-    gfortran
-    mpiAll
-  ];
-
-  dontDisableStatic = true;
-
-  configureFlags = [
-    "--with-gaspi=${gpi-2}"
-    "CFLAGS=-fPIC"
-    "CXXFLAGS=-fPIC"
-  ];
-
-  hardeningDisable = [ "all" ];
-
-  meta = {
-    homepage = "https://github.com/bsc-pm/tagaspi";
-    description = "Task-Aware GASPI";
-    maintainers = with lib.maintainers.bsc; [ rarias ];
-    platforms = lib.platforms.linux;
-    license = lib.licenses.gpl3Plus;
-  };
-}

pkgs/tampi/default.nix

@@ -1,72 +0,0 @@
-{
-  stdenv
-, lib
-, fetchFromGitHub
-, automake
-, autoconf
-, libtool
-, gnumake
-, boost
-, mpi
-, autoreconfHook
-, enableOvni ? true
-, ovni ? null
-, useGit ? false
-, gitUrl ? "ssh://git@bscpm04.bsc.es/interoperability/tampi.git"
-, gitBranch ? "master"
-, gitCommit ? "f6455db9d3124ae36e715a4874fd49720e79f20a"
-}:
-
-with lib;
-
-assert enableOvni -> (ovni != null);
-
-let
-  release = rec {
-    version = "4.1";
-    src = fetchFromGitHub {
-      owner = "bsc-pm";
-      repo = "tampi";
-      rev = "v${version}";
-      hash = "sha256-SwfPSnwcZnRnSgNvCD5sFSUJRpWINqI5I4adj5Hh+XY=";
-    };
-  };
-  git = rec {
-    version = src.shortRev;
-    src = builtins.fetchGit {
-      url = gitUrl;
-      ref = gitBranch;
-      rev = gitCommit;
-    };
-  };
-  source = if (useGit) then git else release;
-in stdenv.mkDerivation {
-  pname = "tampi";
-  inherit (source) src version;
-  enableParallelBuilding = true;
-  separateDebugInfo = true;
-
-  nativeBuildInputs = [
-    autoconf
-    automake
-    autoreconfHook
-    gnumake
-    libtool
-  ];
-
-  buildInputs = [
-    boost
-    mpi
-  ] ++ optional (enableOvni) ovni;
-  configureFlags = optional (enableOvni) "--with-ovni=${ovni}";
-  dontDisableStatic = true;
-  hardeningDisable = [ "all" ];
-
-  meta = {
-    homepage = "https://github.com/bsc-pm/tampi";
-    description = "Task-Aware MPI";
-    maintainers = with lib.maintainers.bsc; [ rarias ];
-    platforms = lib.platforms.linux;
-    license = lib.licenses.gpl3Plus;
-  };
-}

test/bugs/hwloc.c

@@ -1,36 +0,0 @@
-#include <stdio.h>
-#include <hwloc.h>
-#include <assert.h>
-
-int main(int argc, char *argv[])
-{
-	size_t i, coreCount;
-	hwloc_topology_t topology;
-	hwloc_obj_t obj;
-
-	if(hwloc_topology_init(&topology))
-	{
-		fprintf(stderr, "hwloc_topology_init failed\n");
-		exit(EXIT_FAILURE);
-	}
-
-	if(hwloc_topology_load(topology))
-	{
-		fprintf(stderr, "hwloc_topology_load failed\n");
-		exit(EXIT_FAILURE);
-	}
-
-	coreCount = hwloc_get_nbobjs_by_type(topology, HWLOC_OBJ_CORE);
-	printf("coreCount = %zu\n", coreCount);
-
-	for(i = 0; i < coreCount; i++)
-	{
-		obj = hwloc_get_obj_by_type(topology, HWLOC_OBJ_PU, i);
-		assert(obj != NULL);
-		assert(obj->parent != NULL);
-		printf("obj->parent->type = %d, i = %zu\n", obj->parent->type, i);
-		assert(obj->parent->type == HWLOC_OBJ_CORE);
-	}
-
-	printf("hwloc test OK\n");
-}

test/bugs/hwloc.nix

@@ -1,21 +0,0 @@
-{
-  stdenv
-, hwloc
-, strace
-}:
-
-stdenv.mkDerivation {
-  name = "hwloc-test";
-  requiredSystemFeatures = [ "sys-devices" ];
-
-  src = ./.;
-
-  buildInputs = [ hwloc strace ];
-
-  buildPhase = ''
-    ls -l /sys
-    gcc -lhwloc hwloc.c -o hwloc
-    strace ./hwloc > $out
-  '';
-
-}

test/chroot.nix

@@ -1,22 +0,0 @@
-{stdenv}:
-
-stdenv.mkDerivation rec {
-  version = "0.0.1";
-  name = "chroot-checker";
-  src = ./chroot.nix;
-  dontUnpack = true;
-  buildPhase = ''
-    if [ -e /boot ]; then
-      echo Build is NOT under chroot
-      echo This is the content of / :
-      ls -l /
-      exit 1
-    fi
-
-    echo "OK: Build is under chroot"
-  '';
-
-  installPhase = ''
-    mkdir -p $out
-  '';
-}

test/compilers/asan.nix

@@ -1,32 +0,0 @@
-{ stdenv, writeText, which, strace }:
-
-let
-  hello_c = writeText "hello.c" ''
-    #include <stdio.h>
-
-    int main()
-    {
-            printf("Hello world!\n");
-            return 0;
-    }
-  '';
-in
-
-stdenv.mkDerivation rec {
-  version = "0.0.1";
-  name = "asan-c";
-  buildInputs = [ stdenv which strace ];
-  src = hello_c;
-  dontUnpack = true;
-  dontConfigure = true;
-  NIX_DEBUG = 0;
-  buildPhase = ''
-    cp ${hello_c} hello.c
-    $CC -v -fsanitize=address hello.c -o hello
-    ./hello
-  '';
-
-  installPhase = ''
-    touch $out
-  '';
-}

test/compilers/clang-ompss2.nix

@@ -1,20 +0,0 @@
-{stdenv, clang-ompss2, nanos6}:
-
-stdenv.mkDerivation rec {
-  version = "0.0.1";
-  name = "test-clang-ompss2";
-  src = ./.;
-  buildInputs = [ clang-ompss2 nanos6 ];
-  NIX_DEBUG = 1;
-
-  buildPhase = ''
-    clang -fompss-2 hello.c -o hello
-    ./hello
-    clang++ -fompss-2 hello.cc -o hello
-    ./hello
-  '';
-
-  installPhase = ''
-    mkdir -p $out
-  '';
-}

test/compilers/clang-openmp-ld.nix

@@ -1,45 +0,0 @@
-{
-  stdenv
-, writeText
-, openmp
-}:
-
-let
-  hello_c = writeText "hello.c" ''
-  int main(int argc, char *argv[])
-  {
-    #pragma omp parallel
-    {
-    }
-
-    return 0;
-  }
-  '';
-
-in stdenv.mkDerivation {
-  pname = "openmp-test-ld";
-  version = "1.0.0";
-
-  dontUnpack = true;
-  dontConfigure = true;
-
-  # nOS-V requires access to /sys/devices to request NUMA information
-  requiredSystemFeatures = [ "sys-devices" ];
-
-  buildInputs = [ openmp ];
-
-  buildPhase = ''
-    set -x
-
-    cp ${hello_c} hello.c
-    clang -fopenmp=libompv ./hello.c -o hello
-
-    set +x
-  '';
-
-  installPhase = ''
-    touch $out
-  '';
-
-}
-

test/compilers/clang-openmp-nosv.nix

@@ -1,59 +0,0 @@
-{
-  stdenv
-, nosv
-, writeText
-}:
-
-let
-  hello_c = writeText "hello.c" ''
-  #include <nosv.h>
-  #include <stdlib.h>
-  #include <stdio.h>
-  int main(int argc, char *argv[])
-  {
-    int test = 1;
-    #pragma omp parallel
-    #pragma omp single
-    #pragma omp task
-    {
-        if (nosv_self() == NULL) {
-            printf("nosv_self() returned NULL\n");
-            exit(1);
-        } else {
-            printf("nosv_self() INSIDE TASK OK\n");
-        }
-        test = 0;
-    }
-
-    return test;
-  }
-  '';
-
-in stdenv.mkDerivation {
-  pname = "openmp-test-nosv";
-  version = "1.0.0";
-
-  dontUnpack = true;
-  dontConfigure = true;
-
-  # nOS-V requires access to /sys/devices to request NUMA information
-  requiredSystemFeatures = [ "sys-devices" ];
-
-  buildInputs = [ nosv ];
-
-  buildPhase = ''
-    set -x
-
-    cp ${hello_c} hello.c
-    clang -fopenmp=libompv ./hello.c -lnosv -o hello
-    ./hello | grep "INSIDE TASK OK"
-
-    set +x
-  '';
-
-  installPhase = ''
-    touch $out
-  '';
-
-}
-

test/compilers/clang-openmp.nix

@@ -1,45 +0,0 @@
-{ 
-  stdenv
-, writeText
-}:
-
-let
-  hello_c = writeText "hello.c" ''
-  int main(int argc, char *argv[])
-  {
-    int test = 1;
-    #pragma omp parallel
-    #pragma omp single
-    #pragma omp task
-    test = 0;
-
-    return test;
-  }
-  '';
-
-in stdenv.mkDerivation {
-  pname = "openmp-test";
-  version = "1.0.0";
-
-  dontUnpack = true;
-  dontConfigure = true;
-
-  # nOS-V requires access to /sys/devices to request NUMA information
-  requiredSystemFeatures = [ "sys-devices" ];
-
-  buildPhase = ''
-    set -x
-
-    cp ${hello_c} hello.c
-    clang -fopenmp ./hello.c -o hello
-    ./hello
-
-    set +x
-  '';
-
-  installPhase = ''
-    touch $out
-  '';
-
-}
-

test/compilers/hello-c.nix

@@ -1,68 +0,0 @@
-{ stdenv, writeText, which, strace }:
-
-let
-  hello_c = writeText "hello.c" ''
-    #include <stdio.h>
-    #include <limits.h>
-    #include <xmmintrin.h>
-
-    int main()
-    {
-            printf("Hello world!\n");
-            return 0;
-    }
-  '';
-  shuffle_c = writeText "shuffle.c" ''
-    #include <stdio.h>
-
-    typedef int v4si __attribute__ ((vector_size (16)));
-
-    int main(void) {
-	 v4si a = {1,2,3,4};
-	 v4si b = {5,6,7,8};
-	 v4si mask1 = {0,1,1,3};
-	 v4si mask2 = {0,4,2,5};
-	 v4si res;
-
-    #if defined(__GNUC__) && (__GNUC__ >= 7)
-	 res = __builtin_shuffle (a, mask1);       /* res is {1,2,2,4}  */
-	 res = __builtin_shuffle (a, b, mask2);    /* res is {1,5,3,6}  */
-
-	 printf("%d %d %d %d\n", res[0], res[1], res[2], res[3]);
-    #endif
-
-	 return 0;
-    }
-  '';
-in
-
-stdenv.mkDerivation rec {
-  version = "0.0.1";
-  name = "hello-c";
-  buildInputs = [ stdenv which strace ];
-  src = hello_c;
-  dontUnpack = true;
-  dontConfigure = true;
-  NIX_DEBUG = 0;
-  buildPhase = ''
-    set -x
-    echo CC=$CC
-    which $CC
-    $CC -v
-
-    cp ${hello_c} hello.c
-    $CC -v hello.c -o hello
-    ./hello
-
-    # Only gcc
-    #cp ${shuffle_c} shuffle.c
-    #$CC shuffle.c -o shuffle
-    #./shuffle
-
-    set +x
-  '';
-
-  installPhase = ''
-    touch $out
-  '';
-}

test/compilers/hello-cpp.nix

@@ -1,36 +0,0 @@
-{ stdenv, writeText, which, strace }:
-
-let
-  hello_cpp = writeText "hello.cpp" ''
-    #include <cstdio>
-
-    int main()
-    {
-            printf("Hello world!\n");
-            return 0;
-    }
-  '';
-in
-
-stdenv.mkDerivation rec {
-  version = "0.0.1";
-  name = "hello-cpp";
-  buildInputs = [ stdenv which strace ];
-  src = hello_cpp;
-  dontUnpack = true;
-  dontConfigure = true;
-  NIX_DEBUG = 0;
-  buildPhase = ''
-    cp $src hello.cpp
-    set -x
-    echo CXX=$CXX
-    which $CXX
-    $CXX hello.cpp -o hello
-    ./hello
-    set +x
-  '';
-
-  installPhase = ''
-    touch $out
-  '';
-}

test/compilers/hello-f.nix

@@ -1,35 +0,0 @@
-{ stdenv, writeText, which, strace }:
-
-let
-  hello_f90 = writeText "hello.f90" ''
-    program hello
-      print *, 'Hello, World!'
-    end program hello
-  '';
-in
-
-stdenv.mkDerivation rec {
-  version = "0.0.1";
-  name = "hello-f90";
-  buildInputs = [ stdenv which strace ];
-  src = hello_f90;
-  dontUnpack = true;
-  dontConfigure = true;
-  NIX_DEBUG = 0;
-  buildPhase = ''
-    set -x
-    echo FC=$FC
-    which $FC
-    $FC -v
-
-    cp ${hello_f90} hello.f90
-    $FC hello.f90 -o hello
-    ./hello
-
-    set +x
-  '';
-
-  installPhase = ''
-    touch $out
-  '';
-}

test/compilers/hello.c

@@ -1,7 +0,0 @@
-#include <stdio.h>
-
-int main()
-{
-	printf("Hello world!\n");
-	return 0;
-}

test/compilers/hello.cc

@@ -1,7 +0,0 @@
-#include <stdio.h>
-
-int main()
-{
-	printf("Hello world!\n");
-	return 0;
-}

test/compilers/llvm-ompss2-flang.nix

@@ -1,25 +0,0 @@
-{
-  stdenv
-, flangOmpss2Git
-, runCommand
-, writeText
-, strace
-}:
-
-stdenv.mkDerivation {
-  name = "flang-ompss2-test";
-  buildInputs = [ strace flangOmpss2Git ];
-  file = writeText "hi.f90"
-  ''
-          program hello
-          print *, 'Hello, World!'
-          end program hello
-  '';
-  phases = [ "installPhase" ];
-  installPhase = ''
-    set -x
-    flang "$file" -c -o hi.o
-    flang hi.o -o hi
-    install -Dm555 hi "$out"
-  '';
-}

test/compilers/lto.nix

@@ -1,43 +0,0 @@
-{ stdenv, writeText, which, strace }:
-
-let
-  hello_c = writeText "hello.c" ''
-    #include <stdio.h>
-    #include <limits.h>
-    #include <xmmintrin.h>
-
-    int main()
-    {
-            printf("Hello world!\n");
-            return 0;
-    }
-  '';
-in
-
-stdenv.mkDerivation rec {
-  version = "0.0.1";
-  name = "lto-c";
-  buildInputs = [ stdenv which strace ];
-  src = hello_c;
-  dontUnpack = true;
-  dontConfigure = true;
-  NIX_DEBUG = 0;
-  buildPhase = ''
-    set -x
-    echo CC=$CC
-    echo LD=$LD
-    echo -------------------------------------------
-    env
-    echo -------------------------------------------
-
-    cp ${hello_c} hello.c
-    $CC -v -flto hello.c -o hello
-    ./hello
-
-    set +x
-  '';
-
-  installPhase = ''
-    touch $out
-  '';
-}

test/compilers/ompss2.nix

@@ -1,53 +0,0 @@
-{ stdenv, writeText, which, strace, gdb }:
-
-let
-  task_c = writeText "task.c" ''
-    #include <stdio.h>
-
-    int main()
-    {
-        for (int i = 0; i < 10; i++) {
-            #pragma oss task
-            printf("Hello world!\n");
-        }
-
-        return 0;
-    }
-  '';
-in
-
-stdenv.mkDerivation rec {
-  version = "0.0.1";
-  name = "task_c";
-  src = task_c;
-  dontUnpack = true;
-  dontConfigure = true;
-  hardeningDisable = [ "all" ];
-  #NIX_DEBUG = 1;
-  buildInputs = [ ]; #strace gdb;
-
-  # NODES requires access to /sys/devices to request NUMA information
-  requiredSystemFeatures = [ "sys-devices" ];
-
-  buildPhase = ''
-    set -x
-    #$CC -v
-
-    cp ${task_c} task.c
-
-    echo CC=$CC
-    echo NANOS6_HOME=$NANOS6_HOME
-    echo NODES_HOME=$NODES_HOME
-    cat task.c
-    $CC -fompss-2 task.c -o task
-    #strace -ff -e trace=open,openat -s9999999 ./task
-    LD_DEBUG=libs ./task
-    #gdb -batch -ex "run" -ex "bt" ./task
-
-    set +x
-  '';
-
-  installPhase = ''
-    touch $out
-  '';
-}

test/compilers/suffle-c.nix

@@ -1,50 +0,0 @@
-{ stdenv, writeText, which, strace }:
-
-let
-  shuffle_c = writeText "shuffle.c" ''
-    #include <stdio.h>
-
-    typedef int v4si __attribute__ ((vector_size (16)));
-
-    int main(void) {
-	 v4si a = {1,2,3,4};
-	 v4si b = {5,6,7,8};
-	 v4si mask1 = {0,1,1,3};
-	 v4si mask2 = {0,4,2,5};
-	 v4si res;
-
-    #if defined(__GNUC__) && (__GNUC__ >= 7)
-	 res = __builtin_shuffle (a, mask1);       /* res is {1,2,2,4}  */
-	 res = __builtin_shuffle (a, b, mask2);    /* res is {1,5,3,6}  */
-
-	 printf("%d %d %d %d\n", res[0], res[1], res[2], res[3]);
-    #endif
-
-	 return 0;
-    }
-  '';
-in
-
-stdenv.mkDerivation rec {
-  version = "0.0.1";
-  name = "hello-c";
-  buildInputs = [ stdenv which strace ];
-  src = hello_c;
-  dontUnpack = true;
-  dontConfigure = true;
-  NIX_DEBUG = 0;
-  buildPhase = ''
-    cp $src hello.c
-    set -x
-    echo CC=$CC
-    which $CC
-    #strace -ff -e trace=execve -s99999999 $CC hello.c -o hello
-    $CC hello.c -o hello
-    ./hello
-    set +x
-  '';
-
-  installPhase = ''
-    touch $out
-  '';
-}

test/reproducers/sigsegv.c

@@ -1,35 +0,0 @@
-#include <mpi.h>
-#include <stdio.h>
-#include <signal.h>
-#include <stdlib.h>
-
-void sigsegv(int rank)
-{
-        if (rank == 2) raise(SIGSEGV);
-}
-
-int main(int argc, char *argv[])
-{
-        int rank;
-        char where;
-
-        MPI_Init(&argc, &argv);
-
-        if(!argv[1])
-        {
-                fprintf(stderr, "missing \"before\" or \"after\" argument\n");
-                exit(1);
-        }
-
-        MPI_Comm_rank(MPI_COMM_WORLD, &rank);
-
-        where = argv[1][0];
-
-        if(where == 'b') sigsegv(rank);
-
-        MPI_Finalize();
-
-        if(where == 'a') sigsegv(rank);
-
-        return 0;
-}

test/reproducers/sigsegv.nix

@@ -1,20 +0,0 @@
-{
-  stdenv
-, mpi
-}:
-
-stdenv.mkDerivation {
-  name = "sigsegv";
-
-  src = ./.;
-
-  buildInputs = [ mpi ];
-
-  buildPhase = ''
-    mpicc sigsegv.c -o sigsegv
-  '';
-
-  installPhase = ''
-    cp sigsegv $out
-  '';
-}

test/security/internet.nix

@@ -1,20 +0,0 @@
-{stdenv, curl, coreutils}:
-
-stdenv.mkDerivation rec {
-  version = "0.0.1";
-  name = "internet-test";
-  src = ./internet.nix;
-  dontUnpack = true;
-  buildInputs = [ curl coreutils ];
-  buildPhase = ''
-    cat /proc/self/mounts
-    ls -l /proc
-    ls -l /
-    ip addr
-    ${curl}/bin/curl https://www.bsc.es/
-  '';
-
-  installPhase = ''
-    mkdir -p $out
-  '';
-}