pocl: add passthru test that sets doCheck

pocl: tweak configure flags
pocl: v7.0 -> v7.1
2025-10-28 17:02:27 +01:00 · 2025-10-28 17:02:26 +01:00 · 2025-10-28 17:02:26 +01:00 · 2025-10-28 17:02:26 +01:00 · 2025-10-28 17:02:26 +01:00
42 changed files with 219 additions and 1028 deletions
--- a/flake.lock
+++ b/flake.lock
@@ -2,16 +2,16 @@
  "nodes": {
    "nixpkgs": {
      "locked": {
-        "lastModified": 1764522689,
-        "narHash": "sha256-SqUuBFjhl/kpDiVaKLQBoD8TLD+/cTUzzgVFoaHrkqY=",
+        "lastModified": 1752436162,
+        "narHash": "sha256-Kt1UIPi7kZqkSc5HVj6UY5YLHHEzPBkgpNUByuyxtlw=",
        "owner": "NixOS",
        "repo": "nixpkgs",
-        "rev": "8bb5646e0bed5dbd3ab08c7a7cc15b75ab4e1d0f",
+        "rev": "dfcd5b901dbab46c9c6e80b265648481aafb01f8",
        "type": "github"
      },
      "original": {
        "owner": "NixOS",
-        "ref": "nixos-25.11",
+        "ref": "nixos-25.05",
        "repo": "nixpkgs",
        "type": "github"
      }
--- a/flake.nix
+++ b/flake.nix
@@ -1,6 +1,6 @@
 {
  inputs = {
-    nixpkgs.url = "github:NixOS/nixpkgs/nixos-25.11";
+    nixpkgs.url = "github:NixOS/nixpkgs/nixos-25.05";
  };

  outputs = { self, nixpkgs, ... }:
--- a/m/common/base/env.nix
+++ b/m/common/base/env.nix
@@ -1,12 +1,12 @@
-{ pkgs, ... }:
+{ pkgs, config, ... }:

 {
  environment.systemPackages = with pkgs; [
    vim wget git htop tmux pciutils tcpdump ripgrep nix-index nixos-option
    nix-diff ipmitool freeipmi ethtool lm_sensors cmake gnumake file tree
-    ncdu perf ldns pv
-    # From jungle overlay
-    osumb nixgen
+    ncdu config.boot.kernelPackages.perf ldns pv
+    # From bsckgs overlay
+    osumb
  ];

  programs.direnv.enable = true;
--- a/m/common/base/watchdog.nix
+++ b/m/common/base/watchdog.nix
@@ -5,5 +5,5 @@
  boot.kernelModules = [ "ipmi_watchdog" ];

  # Enable systemd watchdog with 30 s interval
-  systemd.settings.Manager.RuntimeWatchdogSec = 30;
+  systemd.watchdog.runtimeTime = "30s";
 }
--- a/m/fox/configuration.nix
+++ b/m/fox/configuration.nix
@@ -93,4 +93,20 @@
    wantedBy = [ "multi-user.target" ];
    serviceConfig.ExecStart = script;
  };
+
+  # Only allow SSH connections from users who have a SLURM allocation
+  # See: https://slurm.schedmd.com/pam_slurm_adopt.html
+  security.pam.services.sshd.rules.account.slurm = {
+    control = "required";
+    enable = true;
+    modulePath = "${pkgs.slurm}/lib/security/pam_slurm_adopt.so";
+    args = [ "log_level=debug5" ];
+    order = 999999; # Make it last one
+  };
+
+  # Disable systemd session (pam_systemd.so) as it will conflict with the
+  # pam_slurm_adopt.so module. What happens is that the shell is first adopted
+  # into the slurmstepd task and then into the systemd session, which is not
+  # what we want, otherwise it will linger even if all jobs are gone.
+  security.pam.services.sshd.startSession = lib.mkForce false;
 }
--- a/m/module/debuginfod.nix
+++ b/m/module/debuginfod.nix
@@ -1,10 +1,3 @@
 {
-  services.nixseparatedebuginfod2 = {
-    enable = true;
-    substituters = [
-      "local:"
-      "https://cache.nixos.org"
-      "http://hut/cache"
-    ];
-  };
+  services.nixseparatedebuginfod.enable = true;
 }
--- a/m/module/slurm-client.nix
+++ b/m/module/slurm-client.nix
@@ -1,4 +1,4 @@
-{ lib, pkgs, ... }:
+{ lib, ... }:

 {
  imports = [
@@ -21,20 +21,4 @@
  };

  services.slurm.client.enable = true;
-
-  # Only allow SSH connections from users who have a SLURM allocation
-  # See: https://slurm.schedmd.com/pam_slurm_adopt.html
-  security.pam.services.sshd.rules.account.slurm = {
-    control = "required";
-    enable = true;
-    modulePath = "${pkgs.slurm}/lib/security/pam_slurm_adopt.so";
-    args = [ "log_level=debug5" ];
-    order = 999999; # Make it last one
-  };
-
-  # Disable systemd session (pam_systemd.so) as it will conflict with the
-  # pam_slurm_adopt.so module. What happens is that the shell is first adopted
-  # into the slurmstepd task and then into the systemd session, which is not
-  # what we want, otherwise it will linger even if all jobs are gone.
-  security.pam.services.sshd.startSession = lib.mkForce false;
 }
--- a/m/module/slurm-common.nix
+++ b/m/module/slurm-common.nix
@@ -1,6 +1,31 @@
 { config, pkgs, ... }:

-{
+let
+  suspendProgram = pkgs.writeShellScript "suspend.sh" ''
+    exec 1>>/var/log/power_save.log 2>>/var/log/power_save.log
+    set -x
+    export "PATH=/run/current-system/sw/bin:$PATH"
+    echo "$(date) Suspend invoked $0 $*" >> /var/log/power_save.log
+    hosts=$(scontrol show hostnames $1)
+    for host in $hosts; do
+      echo Shutting down host: $host
+      ipmitool -I lanplus -H ''${host}-ipmi -P "" -U "" chassis power off
+    done
+  '';
+
+  resumeProgram = pkgs.writeShellScript "resume.sh" ''
+    exec 1>>/var/log/power_save.log 2>>/var/log/power_save.log
+    set -x
+    export "PATH=/run/current-system/sw/bin:$PATH"
+    echo "$(date) Suspend invoked $0 $*" >> /var/log/power_save.log
+    hosts=$(scontrol show hostnames $1)
+    for host in $hosts; do
+      echo Starting host: $host
+      ipmitool -I lanplus -H ''${host}-ipmi -P "" -U "" chassis power on
+    done
+  '';
+
+in {
  services.slurm = {
    controlMachine = "apex";
    clusterName = "jungle";
@@ -34,6 +59,16 @@
      # the resources. Use the task/cgroup plugin to enable process containment.
      TaskPlugin=task/affinity,task/cgroup

+      # Power off unused nodes until they are requested
+      SuspendProgram=${suspendProgram}
+      SuspendTimeout=60
+      ResumeProgram=${resumeProgram}
+      ResumeTimeout=300
+      SuspendExcNodes=fox
+
+      # Turn the nodes off after 1 hour of inactivity
+      SuspendTime=3600
+
      # Reduce port range so we can allow only this range in the firewall
      SrunPortRange=60000-61000

--- a/overlay.nix
+++ b/overlay.nix
@@ -30,15 +30,13 @@ let
      amd-uprof-driver = _prev.callPackage ./pkgs/amd-uprof/driver.nix { };
    });
    lmbench = callPackage ./pkgs/lmbench/default.nix { };
-    # Broken and unmantained
-    # mcxx = callPackage ./pkgs/mcxx/default.nix { };
+    mcxx = callPackage ./pkgs/mcxx/default.nix { };
    meteocat-exporter = prev.callPackage ./pkgs/meteocat-exporter/default.nix { };
    mpi = final.mpich; # Set MPICH as default
    mpich = callPackage ./pkgs/mpich/default.nix { mpich = prev.mpich; };
    nanos6 = callPackage ./pkgs/nanos6/default.nix { };
    nanos6Debug = final.nanos6.override { enableDebug = true; };
    nixtools = callPackage ./pkgs/nixtools/default.nix { };
-    nixgen = callPackage ./pkgs/nixgen/default.nix { };
    # Broken because of pkgsStatic.libcap
    # See: https://github.com/NixOS/nixpkgs/pull/268791
    #nix-wrap = callPackage ./pkgs/nix-wrap/default.nix { };
@@ -51,7 +49,6 @@ let
    ovniGit = final.ovni.override { useGit = true; };
    paraverKernel = callPackage ./pkgs/paraver/kernel.nix { };
    pocl = callPackage ./pkgs/pocl/default.nix { };
-    pocl-noicd = callPackage ./pkgs/pocl/default.nix { enableICD = false; };
    prometheus-slurm-exporter = prev.callPackage ./pkgs/slurm-exporter/default.nix { };
    #pscom = callPackage ./pkgs/parastation/pscom.nix { }; # Unmaintaned
    #psmpi = callPackage ./pkgs/parastation/psmpi.nix { }; # Unmaintaned
@@ -64,16 +61,7 @@ let
    tagaspi = callPackage ./pkgs/tagaspi/default.nix { };
    tampi = callPackage ./pkgs/tampi/default.nix { };
    upc-qaire-exporter = prev.callPackage ./pkgs/upc-qaire-exporter/default.nix { };
-    taopencl = callPackage ./pkgs/taopencl/default.nix { };
    wxparaver = callPackage ./pkgs/paraver/default.nix { };
-
-    gromacs = callPackage ./pkgs/gromacs/default.nix { enableSYCL = true; };
-
-    _cuda = prev._cuda.extend (_: _prev: final.lib.recursiveUpdate _prev {
-      extensions = _prev.extensions ++ [(finalAttrs: _: {
-        tacuda = finalAttrs.callPackage ./pkgs/tacuda/default.nix { };
-      })];
-    });
  };

  tests = rec {
@@ -108,28 +96,21 @@ let
      stdenv = final.stdenvClangOmpss2NodesOmpv;
    };

-    ocl-build = callPackage ./test/compilers/opencl.nix { };
-    ocl-build-noicd = callPackage ./test/compilers/opencl.nix { ocl-icd = final.pocl-noicd; };
-
    pocl = callPackage ./test/compilers/pocl.nix { };
-    ocl-run-pocl = ocl-build.test-icd;
-    ocl-run-pocl-noicd = ocl-build-noicd.test-noicd;
  };

  # For now, only build toplevel packages in CI/Hydra
  pkgsTopLevel = filterAttrs (_: isDerivation) bscPkgs;

  # Native build in that platform doesn't imply cross build works
-  canCrossCompile = platform: default: pkg:
+  canCrossCompile = platform: pkg:
    (isDerivation pkg) &&
-    # If meta.cross is undefined, use default
-    (pkg.meta.cross or default) &&
-    (meta.availableOn final.pkgsCross.${platform}.stdenv.hostPlatform pkg);
+    # Must be defined explicitly
+    (pkg.meta.cross or false) &&
+    (meta.availableOn platform pkg);

  # For now only RISC-V
-  crossSet = genAttrs [ "riscv64" ] (platform:
-    filterAttrs (_: canCrossCompile platform true)
-      final.pkgsCross.${platform}.bsc.pkgsTopLevel);
+  crossSet = { riscv64 = final.pkgsCross.riscv64.bsc.pkgsTopLevel; };

  buildList = name: paths:
    final.runCommandLocal name { } ''
@@ -149,7 +130,7 @@ let
  # For now only RISC-V
  crossList = buildList "ci-cross"
    (filter
-      (canCrossCompile "riscv64" false) # opt-in (pkgs with: meta.cross = true)
+      (canCrossCompile final.pkgsCross.riscv64.stdenv.hostPlatform)
        (builtins.attrValues crossSet.riscv64));

 in bscPkgs // {
--- a/pkgs/amd-uprof/default.nix
+++ b/pkgs/amd-uprof/default.nix
@@ -90,7 +90,7 @@ in
    meta = {
      description = "Performance analysis tool-suite for x86 based applications";
      homepage = "https://www.amd.com/es/developer/uprof.html";
-      platforms = [ "x86_64-linux" ];
+      platforms = lib.platforms.linux;
      license = lib.licenses.unfree;
      maintainers = with lib.maintainers.bsc; [ rarias varcila ];
    };
--- a/pkgs/amd-uprof/driver.nix
+++ b/pkgs/amd-uprof/driver.nix
@@ -19,7 +19,7 @@ in stdenv.mkDerivation {
  '';
  hardeningDisable = [ "pic" "format" ];
  nativeBuildInputs = kernel.moduleBuildDependencies;
-  patches = [ ./makefile.patch ./hrtimer.patch ./remove-wr-rdmsrq.patch ];
+  patches = [ ./makefile.patch ./hrtimer.patch ];
  makeFlags = [
    "KERNEL_VERSION=${kernel.modDirVersion}"
    "KERNEL_DIR=${kernel.dev}/lib/modules/${kernel.modDirVersion}/build"
--- a/pkgs/amd-uprof/remove-wr-rdmsrq.patch
+++ b/pkgs/amd-uprof/remove-wr-rdmsrq.patch
@@ -1,20 +0,0 @@
-diff --git a/inc/PwrProfAsm.h b/inc/PwrProfAsm.h
-index d77770a..c93a0e9 100644
--- a/inc/PwrProfAsm.h
-+++ b/inc/PwrProfAsm.h
-@@ -347,6 +347,7 @@
- 
- #endif
- 
-+/*
- #define rdmsrq(msr,val1,val2,val3,val4) ({ \
-         __asm__ __volatile__( \
-                               "rdmsr\n" \
-@@ -362,6 +363,7 @@
-                               :"c"(msr), "a"(val1), "d"(val2), "S"(val3), "D"(val4) \
-                             ); \
-     })
-+*/
- 
- #define rdmsrpw(msr,val1,val2,val3,val4) ({ \
-         __asm__ __volatile__( \
--- a/pkgs/cudainfo/default.nix
+++ b/pkgs/cudainfo/default.nix
@@ -1,6 +1,5 @@
 {
  stdenv
-, lib
 , cudatoolkit
 , cudaPackages
 , autoAddDriverRunpath
@@ -12,7 +11,7 @@ stdenv.mkDerivation (finalAttrs: {
  src = ./.;
  buildInputs = [
    cudatoolkit # Required for nvcc
-    (lib.getOutput "static" cudaPackages.cuda_cudart) # Required for -lcudart_static
+    cudaPackages.cuda_cudart.static # Required for -lcudart_static
    autoAddDriverRunpath
  ];
  installPhase = ''
@@ -41,9 +40,4 @@ stdenv.mkDerivation (finalAttrs: {
    '';
    installPhase = "touch $out";
  };
-
-  meta = {
-    platforms = [ "x86_64-linux" ];
-    maintainers = with lib.maintainers.bsc; [ rarias ];
-  };
 })
--- a/pkgs/gpi-2/default.nix
+++ b/pkgs/gpi-2/default.nix
@@ -9,6 +9,7 @@
 , automake
 , libtool
 , mpi
+, rsync
 , gfortran
 }:

@@ -43,24 +44,13 @@ stdenv.mkDerivation rec {

  configureFlags = [
    "--with-infiniband=${rdma-core-all}"
-    "--with-mpi=yes" # fixes mpi detection when cross-compiling
+    "--with-mpi=${mpiAll}"
    "--with-slurm"
    "CFLAGS=-fPIC"
    "CXXFLAGS=-fPIC"
  ];

-  nativeBuildInputs = [
-    autoconf
-    automake
-    gfortran
-    libtool
-  ];
-
-  buildInputs = [
-    slurm
-    mpiAll
-    rdma-core-all
-  ];
+  buildInputs = [ slurm mpiAll rdma-core-all autoconf automake libtool rsync gfortran ];

  hardeningDisable = [ "all" ];

@@ -70,6 +60,5 @@ stdenv.mkDerivation rec {
    maintainers = with lib.maintainers.bsc; [ rarias ];
    platforms = lib.platforms.linux;
    license = lib.licenses.gpl3Plus;
-    cross = false; # infiniband detection does not work
  };
 }
--- a/pkgs/gromacs/default.nix
+++ b/pkgs/gromacs/default.nix
@@ -1,190 +0,0 @@
-{
-  lib,
-  stdenv,
-  fetchurl,
-  cmake,
-  hwloc,
-  fftw,
-  perl,
-  blas,
-  lapack,
-  llvmPackages,
-  intelPackages ? null,
-  mpi,
-  cudaPackages,
-  plumed,
-  singlePrec ? true,
-  config,
-  enableSYCL ? false,
-  enableCuda ? config.cudaSupport,
-  enableMpi ? false,
-  enablePlumed ? false,
-  cpuAcceleration ? null,
-}:
-
-# CUDA is only implemented for single precission
-assert enableCuda -> singlePrec;
-
-assert !(enableSYCL && enableCuda);
-
-assert enableSYCL -> intelPackages != null;
-
-let
-  inherit (cudaPackages.flags) cmakeCudaArchitecturesString;
-
-  # Select reasonable defaults for all major platforms
-  # The possible values are defined in CMakeLists.txt:
-  # AUTO None SSE2 SSE4.1 AVX_128_FMA AVX_256 AVX2_256
-  # AVX2_128 AVX_512 AVX_512_KNL MIC ARM_NEON ARM_NEON_ASIMD
-  SIMD =
-    x:
-    if (cpuAcceleration != null) then
-      x
-    else if stdenv.hostPlatform.system == "i686-linux" then
-      "SSE2"
-    else if stdenv.hostPlatform.system == "x86_64-linux" then
-      "SSE4.1"
-    else if stdenv.hostPlatform.system == "x86_64-darwin" then
-      "SSE4.1"
-    else if stdenv.hostPlatform.system == "aarch64-linux" then
-      "ARM_NEON_ASIMD"
-    else
-      "None";
-
-  source =
-    if enablePlumed then
-      {
-        version = "2024.2";
-        hash = "sha256-gCp+M18uiVdw9XsVnk7DaOuw/yzm2sz3BsboAlw2hSs=";
-      }
-    else
-      {
-        version = "2025.3";
-        hash = "sha256-i9/KAmjz8Qp8o8BuWbYvc+oCQgxnIRwP85EvMteDPGU=";
-      };
-
-  stdenv' = if enableSYCL then intelPackages.stdenv else stdenv;
-
-in
-stdenv'.mkDerivation rec {
-  pname = "gromacs";
-  version = source.version;
-
-  src = fetchurl {
-    url = "ftp://ftp.gromacs.org/pub/gromacs/gromacs-${version}.tar.gz";
-    inherit (source) hash;
-  };
-
-  patches = [ (if enablePlumed then ./pkgconfig-2024.patch else ./pkgconfig-2025.patch) ];
-
-  postPatch = lib.optionalString enablePlumed ''
-    plumed patch -p -e gromacs-${source.version}
-  '';
-
-  outputs = [
-    "out"
-    "dev"
-    "man"
-  ];
-
-  nativeBuildInputs = [
-    cmake
-  ]
-  ++ lib.optional enablePlumed plumed
-  ++ lib.optionals enableCuda [ cudaPackages.cuda_nvcc ];
-
-  env.MKLROOT = intelPackages.mkl;
-
-  buildInputs = [
-    fftw
-    perl
-    hwloc
-    blas
-    lapack
-  ]
-  ++ lib.optional enableMpi mpi
-  ++ lib.optionals enableCuda [
-    cudaPackages.cuda_cccl
-    cudaPackages.cuda_cudart
-    cudaPackages.libcufft
-    cudaPackages.cuda_profiler_api
-  ]
-  ++ lib.optional stdenv.hostPlatform.isDarwin llvmPackages.openmp;
-
-  propagatedBuildInputs = lib.optional enableMpi mpi;
-  propagatedUserEnvPkgs = lib.optional enableMpi mpi;
-
-  cmakeFlags = [
-    (lib.cmakeBool "GMX_HWLOC" true)
-    "-DGMX_SIMD:STRING=${SIMD cpuAcceleration}"
-    "-DGMX_OPENMP:BOOL=TRUE"
-    "-DBUILD_SHARED_LIBS=ON"
-  ]
-  ++ (
-    if singlePrec then
-      [
-        "-DGMX_DOUBLE=OFF"
-      ]
-    else
-      [
-        "-DGMX_DOUBLE=ON"
-        "-DGMX_DEFAULT_SUFFIX=OFF"
-      ]
-  )
-  ++ (
-    if enableMpi then
-      [
-        "-DGMX_MPI:BOOL=TRUE"
-        "-DGMX_THREAD_MPI:BOOL=FALSE"
-      ]
-    else
-      [
-        "-DGMX_MPI:BOOL=FALSE"
-      ]
-  )
-  ++ (lib.optionals enableSYCL [
-    "-DGMX_GPU=SYCL"
-    "-DGMX_OPENMP=OFF" # TODO: enable OpenMP with SYCL?
-  ])
-  ++ lib.optionals enableCuda [
-    "-DGMX_GPU=CUDA"
-    (lib.cmakeFeature "CMAKE_CUDA_ARCHITECTURES" cmakeCudaArchitecturesString)
-
-    # Gromacs seems to ignore and override the normal variables, so we add this ad hoc:
-    (lib.cmakeFeature "GMX_CUDA_TARGET_COMPUTE" cmakeCudaArchitecturesString)
-  ];
-
-  postInstall = ''
-    moveToOutput share/cmake $dev
-  '';
-
-  meta = with lib; {
-    homepage = "https://www.gromacs.org";
-    license = licenses.lgpl21Plus;
-    description = "Molecular dynamics software package";
-    longDescription = ''
-      GROMACS is a versatile package to perform molecular dynamics,
-      i.e. simulate the Newtonian equations of motion for systems
-      with hundreds to millions of particles.
-
-      It is primarily designed for biochemical molecules like
-      proteins, lipids and nucleic acids that have a lot of
-      complicated bonded interactions, but since GROMACS is
-      extremely fast at calculating the nonbonded interactions (that
-      usually dominate simulations) many groups are also using it
-      for research on non-biological systems, e.g. polymers.
-
-      GROMACS supports all the usual algorithms you expect from a
-      modern molecular dynamics implementation, (check the online
-      reference or manual for details), but there are also quite a
-      few features that make it stand out from the competition.
-
-      See: https://www.gromacs.org/about.html for details.
-    '';
-    platforms = platforms.unix;
-    maintainers = with maintainers; [
-      sheepforce
-      markuskowa
-    ];
-  };
-}
--- a/pkgs/gromacs/pkgconfig-2024.patch
+++ b/pkgs/gromacs/pkgconfig-2024.patch
@@ -1,24 +0,0 @@
-diff --git a/src/external/muparser/muparser.pc.in b/src/external/muparser/muparser.pc.in
-index 646787cb53..9b97ad57f7 100644
--- a/src/external/muparser/muparser.pc.in
-+++ b/src/external/muparser/muparser.pc.in
-@@ -1,7 +1,5 @@
-prefix=@CMAKE_INSTALL_PREFIX@
-exec_prefix=${prefix}
-libdir=${prefix}/@CMAKE_INSTALL_LIBDIR@
-includedir=${prefix}/@CMAKE_INSTALL_INCLUDEDIR@
-+libdir=@CMAKE_INSTALL_FULL_LIBDIR@
-+includedir=@CMAKE_INSTALL_FULL_INCLUDEDIR@
- 
- Name: @PACKAGE_NAME@
- Description: Mathematical expressions parser library
-diff --git a/src/gromacs/libgromacs.pc.cmakein b/src/gromacs/libgromacs.pc.cmakein
-index ec1ed6684e..ca1105474a 100644
--- a/src/gromacs/libgromacs.pc.cmakein
-+++ b/src/gromacs/libgromacs.pc.cmakein
-@@ -1,4 +1,4 @@
-libdir=@CMAKE_INSTALL_PREFIX@/@CMAKE_INSTALL_LIBDIR@
-+libdir=@CMAKE_INSTALL_FULL_LIBDIR@
- 
- Name: libgromacs@GMX_LIBS_SUFFIX@
- Description: Gromacs library
--- a/pkgs/gromacs/pkgconfig-2025.patch
+++ b/pkgs/gromacs/pkgconfig-2025.patch
@@ -1,36 +0,0 @@
-diff --git a/src/external/muparser/muparser.pc.in b/src/external/muparser/muparser.pc.in
-index 646787cb53..d26e84de8f 100644
--- a/src/external/muparser/muparser.pc.in
-+++ b/src/external/muparser/muparser.pc.in
-@@ -1,11 +1,9 @@
-prefix=@CMAKE_INSTALL_PREFIX@
-exec_prefix=${prefix}
-libdir=${prefix}/@CMAKE_INSTALL_LIBDIR@
-includedir=${prefix}/@CMAKE_INSTALL_INCLUDEDIR@
-
-Name: @PACKAGE_NAME@
-Description: Mathematical expressions parser library
-Version: @MUPARSER_VERSION@
-Requires:
-Libs: -L${libdir} -lmuparser
-Cflags: -I${includedir} @PKG_CONFIG_FLAGS@
-+libdir=@CMAKE_INSTALL_FULL_LIBDIR@
-+includedir=@CMAKE_INSTALL_FULL_INCLUDEDIR@
-+
-+Name: @PACKAGE_NAME@
-+Description: Mathematical expressions parser library
-+Version: @MUPARSER_VERSION@
-+Requires:
-+Libs: -L${libdir} -lmuparser
-+Cflags: -I${includedir} @PKG_CONFIG_FLAGS@
-diff --git a/src/gromacs/libgromacs.pc.cmakein b/src/gromacs/libgromacs.pc.cmakein
-index af9b5a6dc0..5f58d549bf 100644
--- a/src/gromacs/libgromacs.pc.cmakein
-+++ b/src/gromacs/libgromacs.pc.cmakein
-@@ -1,5 +1,4 @@
-prefix=@CMAKE_INSTALL_PREFIX@
-libdir=${prefix}/@CMAKE_INSTALL_LIBDIR@
-+libdir=@CMAKE_INSTALL_FULL_LIBDIR@
-
- Name: libgromacs@GMX_LIBS_SUFFIX@
- Description: Gromacs library
--- a/pkgs/intel-oneapi/2023.nix
+++ b/pkgs/intel-oneapi/2023.nix
@@ -10,7 +10,7 @@
 , zlib
 , autoPatchelfHook
 , libfabric
-, gcc
+, gcc13
 , wrapCCWith
 }:

@@ -33,6 +33,8 @@ let
    maintainers = with lib.maintainers.bsc; [ abonerib ];
  };

+  gcc = gcc13;
+
  v = {
    hpckit   = "2023.1.0";
    compiler = "2023.1.0";
--- a/pkgs/llvm-ompss2/clang.nix
+++ b/pkgs/llvm-ompss2/clang.nix
@@ -16,19 +16,19 @@
 , useGit ? false
 , gitUrl ? "ssh://git@bscpm04.bsc.es/llvm-ompss/llvm-mono.git"
 , gitBranch ? "master"
-, gitCommit ? "872ba63f86edaefc9787984ef3fae9f2f94e0124" # github-release-2025.11
+, gitCommit ? "880e2341c56bad1dc14e8c369fb3356bec19018e"
 }:

 let
  stdenv = llvmPackages_latest.stdenv;

  release = rec {
-    version = "2025.11";
+    version = "2025.06";
    src = fetchFromGitHub {
      owner = "bsc-pm";
      repo = "llvm";
      rev = "refs/tags/github-release-${version}";
-      hash = "sha256-UgwMTUkM9Z87dDH205swZFBeFhrcbLAxginViG40pBM=";
+      hash = "sha256-ww9PpRmtz/M9IyLiZ8rAehx2UW4VpQt+svf4XfKBzKo=";
    };
  };

--- a/pkgs/llvm-ompss2/default.nix
+++ b/pkgs/llvm-ompss2/default.nix
@@ -27,10 +27,10 @@ let
  # We need to replace the lld linker from bintools with our linker just built,
  # otherwise we run into incompatibility issues when mixing compiler and linker
  # versions.
-  bintools-unwrapped = llvmPackages_latest.bintools-unwrapped.override {
+  bintools-unwrapped = llvmPackages_latest.tools.bintools-unwrapped.override {
    lld = clangOmpss2Unwrapped;
  };
-  bintools = llvmPackages_latest.bintools.override {
+  bintools = llvmPackages_latest.tools.bintools.override {
    bintools = bintools-unwrapped;
  };
  targetConfig = stdenv.targetPlatform.config;
--- a/pkgs/mcxx/default.nix
+++ b/pkgs/mcxx/default.nix
@@ -65,7 +65,6 @@ stdenv.mkDerivation rec {
  ];

  meta = {
-    broken = true;
    homepage = "https://github.com/bsc-pm/mcxx";
    description = "C/C++/Fortran source-to-source compilation infrastructure aimed at fast prototyping";
    maintainers = with lib.maintainers.bsc; [ rpenacob ];
--- a/pkgs/meteocat-exporter/default.nix
+++ b/pkgs/meteocat-exporter/default.nix
@@ -1,11 +1,9 @@
 { python3Packages, lib }:

-python3Packages.buildPythonApplication {
+python3Packages.buildPythonApplication rec {
  pname = "meteocat-exporter";
  version = "1.0";

-  pyproject = true;
-
  src = ./.;

  doCheck = false;
--- a/pkgs/mpich/default.nix
+++ b/pkgs/mpich/default.nix
@@ -6,13 +6,6 @@
 , pmix
 , gfortran
 , symlinkJoin
-# Disabled when cross-compiling
-# To fix cross compilation, we should fill the values in:
-# https://github.com/pmodels/mpich/blob/main/maint/fcrosscompile/cross_values.txt.in
-# For each arch
-, enableFortran ? stdenv.hostPlatform == stdenv.buildPlatform
-, perl
-, targetPackages
 }:

 let
@@ -22,13 +15,10 @@ let
    paths = [ pmix.dev pmix.out ];
  };
 in mpich.overrideAttrs (old: {
-  buildInputs = old.buildInputs ++ [
+  buildInput = old.buildInputs ++ [
    libfabric
    pmixAll
  ];
-  nativeBuildInputs = old.nativeBuildInputs ++ [
-    perl
-  ];
  configureFlags = [
    "--enable-shared"
    "--enable-sharedlib"
@@ -41,21 +31,10 @@ in mpich.overrideAttrs (old: {
  ] ++ lib.optionals (lib.versionAtLeast gfortran.version "10") [
    "FFLAGS=-fallow-argument-mismatch" # https://github.com/pmodels/mpich/issues/4300
    "FCFLAGS=-fallow-argument-mismatch"
-  ] ++ lib.optionals (!enableFortran) [
-    "--disable-fortran"
  ];
-
-  preFixup = ''
-    sed -i 's:^CC=.*:CC=${targetPackages.stdenv.cc}/bin/${targetPackages.stdenv.cc.targetPrefix}cc:' $out/bin/mpicc
-    sed -i 's:^CXX=.*:CXX=${targetPackages.stdenv.cc}/bin/${targetPackages.stdenv.cc.targetPrefix}c++:' $out/bin/mpicxx
-  '' + lib.optionalString enableFortran ''
-    sed -i 's:^FC=.*:FC=${targetPackages.gfortran or gfortran}/bin/${targetPackages.gfortran.targetPrefix or gfortran.targetPrefix}gfortran:' $out/bin/mpifort
-  '';
-
  hardeningDisable = [ "all" ];

  meta = old.meta // {
    maintainers = old.meta.maintainers ++ (with lib.maintainers.bsc; [ rarias ]);
-    cross = true;
  };
 })
--- a/pkgs/nixgen/default.nix
+++ b/pkgs/nixgen/default.nix
@@ -1,22 +0,0 @@
-{
-  stdenv
-, lib
-}:
-
-stdenv.mkDerivation {
-  pname = "nixgen";
-  version = "0.0.1";
-  src = ./nixgen;
-  dontUnpack = true;
-  phases = [ "installPhase" ];
-  installPhase = ''
-    mkdir -p $out/bin
-    cp -a $src $out/bin/nixgen
-  '';
-  meta = {
-    description = "Quickly generate flake.nix from command line";
-    maintainers = with lib.maintainers.bsc; [ rarias ];
-    platforms = lib.platforms.linux;
-    license = lib.licenses.gpl3Plus;
-  };
-}
--- a/pkgs/nixgen/nixgen
+++ b/pkgs/nixgen/nixgen
@@ -1,97 +0,0 @@
-#!/bin/sh
-#
-# Copyright (c) 2025, Barcelona Supercomputing Center (BSC)
-# SPDX-License-Identifier: GPL-3.0+
-# Author: Rodrigo Arias Mallo <rodrigo.arias@bsc.es>
-
-function usage() {
-  echo "USAGE: nixgen [-f] [package [...]] [-b package [...]]" >&2
-  echo "  Generates a flake.nix file with the given packages." >&2
-  echo "  After flake.nix is created, use 'nix develop' to enter the shell." >&2
-  echo "OPTIONS" >&2
-  echo "  -f               Overwrite existing flake.nix (default: no)." >&2
-  echo "  packages...      Add these packages to the shell." >&2
-  echo "  -b packages...   Add the dependencies needed to build these packages." >&2
-  echo "EXAMPLE" >&2
-  echo "  $ nixgen ovni bigotes -b nosv tampi" >&2
-  echo "  Adds the packages ovni and bigotes as well as all required dependencies" >&2
-  echo "  to build nosv and tampi." >&2
-  echo "AUTHOR" >&2
-  echo "  Rodrigo Arias Mallo <rodrigo.arias@bsc.es>" >&2
-  exit 1
-}
-
-mode=package
-packages=
-inputsFrom=
-force=
-
-if [[ $# -eq 0 ]]; then
-  usage
-fi
-
-while [[ $# -gt 0 ]]; do
-    case $1 in -b)
-      mode=build
-      shift
-      ;;
-    -f)
-      force=1
-      shift
-      ;;
-    -h)
-      usage
-      ;;
-    -*|--*)
-      echo "error: unknown option $1" >&2
-      exit 1
-      ;;
-    *)
-      if [ "$mode" == "package" ]; then
-        packages+="${packages:+ }$1"
-      else
-        inputsFrom+="${inputsFrom:+ }$1"
-      fi
-      shift
-      ;;
-  esac
-done
-
-if [ ! "$force" -a -e flake.nix ]; then
-  echo "error: flake.nix exists, force overwrite with -f" >&2
-  exit 1
-fi
-
-cat > flake.nix <<EOF
-{
-  inputs.jungle.url = "git+https://jungle.bsc.es/git/rarias/jungle";
-  outputs = { self, jungle }:
-  let
-    nixpkgs = jungle.inputs.nixpkgs;
-    customOverlay = (final: prev: {
-      # Example overlay, for now empty
-    });
-    pkgs = import nixpkgs {
-      system = "x86_64-linux";
-      overlays = [
-        # Apply jungle overlay to get our BSC custom packages
-        jungle.outputs.bscOverlay
-        # And on top apply our local changes to customize for cluster
-        customOverlay
-      ];
-    };
-  in {
-    devShells.x86_64-linux.default = pkgs.mkShell {
-      pname = "devshell";
-      # Include these packages in the shell
-      packages = with pkgs; [
-        $packages
-      ];
-      # The dependencies needed to build these packages will be also included
-      inputsFrom = with pkgs; [
-        $inputsFrom
-      ];
-    };
-  };
-}
-EOF
--- a/pkgs/nodes/default.nix
+++ b/pkgs/nodes/default.nix
@@ -14,19 +14,19 @@
 , useGit ? false
 , gitUrl ? "ssh://git@gitlab-internal.bsc.es/nos-v/nodes.git"
 , gitBranch ? "master"
-, gitCommit ? "511489e71504a44381e0930562e7ac80ac69a848" # version-1.4
+, gitCommit ? "6002ec9ae6eb876d962cc34366952a3b26599ba6"
 }:

 with lib;

 let
  release = rec {
-    version = "1.4";
+    version = "1.3";
    src = fetchFromGitHub {
      owner = "bsc-pm";
      repo = "nodes";
      rev = "version-${version}";
-      hash = "sha256-+lR/R0l3fGZO3XG7whMorFW2y2YZ0ZFnLeOHyQYrAsQ=";
+      hash = "sha256-cFb9pxcjtkMmH0CsGgUO9LTdXDNh7MCqicgGWawLrsU=";
    };
  };

--- a/pkgs/nosv/default.nix
+++ b/pkgs/nosv/default.nix
@@ -13,19 +13,19 @@
 , useGit ? false
 , gitUrl ? "git@gitlab-internal.bsc.es:nos-v/nos-v.git"
 , gitBranch ? "master"
-, gitCommit ? "1108e4786b58e0feb9a16fa093010b763eb2f8e8" # version 4.0.0
+, gitCommit ? "9f47063873c3aa9d6a47482a82c5000a8c813dd8"
 }:

 with lib;

 let
  release = rec {
-    version = "4.0.0";
+    version = "3.2.0";
    src = fetchFromGitHub {
      owner = "bsc-pm";
      repo = "nos-v";
      rev = "${version}";
-      hash = "sha256-llaq73bd/YxLVKNlMebnUHKa4z3sdcsuDUoVwUxNuw8=";
+      hash = "sha256-yaz92426EM8trdkBJlISmAoG9KJCDTvoAW/HKrasvOw=";
    };
  };

--- a/pkgs/osu/default.nix
+++ b/pkgs/osu/default.nix
@@ -32,11 +32,6 @@ stdenv.mkDerivation rec {
      "CXX=mpicxx"
  ];

-  env = {
-    MPICH_CC="${stdenv.cc}/bin/${stdenv.cc.targetPrefix}cc";
-    MPICH_CXX="${stdenv.cc}/bin/${stdenv.cc.targetPrefix}c++";
-  };
-
  postInstall = ''
    mkdir -p $out/bin
    for f in $(find $out -executable -type f); do
@@ -49,6 +44,5 @@ stdenv.mkDerivation rec {
    homepage = "http://mvapich.cse.ohio-state.edu/benchmarks/";
    maintainers = [ ];
    platforms = lib.platforms.all;
-    cross = true;
  };
 }
--- a/pkgs/ovni/default.nix
+++ b/pkgs/ovni/default.nix
@@ -7,7 +7,7 @@
 , useGit ? false
 , gitBranch ? "master"
 , gitUrl ? "ssh://git@bscpm04.bsc.es/rarias/ovni.git"
-, gitCommit ? "06432668f346c8bdc1006fabc23e94ccb81b0d8b" # version 1.13.0
+, gitCommit ? "e4f62382076f0cf0b1d08175cf57cc0bc51abc61"
 , enableDebug ? false
 # Only enable MPI if the build is native (fails on cross-compilation)
 , useMpi ? (stdenv.buildPlatform.canExecute stdenv.hostPlatform)
@@ -15,13 +15,13 @@

 let
  release = rec {
-    version = "1.13.0";
+    version = "1.12.0";
    src = fetchFromGitHub {
      owner = "bsc-pm";
      repo = "ovni";
      rev = "${version}";
-      hash = "sha256-0l2ryIyWNiZqeYdVlnj/WnQGS3xFCY4ICG8JedX424w=";
-    } // { shortRev = "0643266"; };
+      hash = "sha256-H04JvsVKrdqr3ON7JhU0g17jjlg/jzQ7eTfx9vUNd3E=";
+    } // { shortRev = "a73afcf"; };
  };

  git = rec {
--- a/pkgs/paraver/default.nix
+++ b/pkgs/paraver/default.nix
@@ -12,7 +12,7 @@
 , paraverKernel
 , openssl
 , glibcLocales
-, wrapGAppsHook3
+, wrapGAppsHook
 }:

 let
@@ -64,7 +64,7 @@ stdenv.mkDerivation rec {
    autoconf
    automake
    autoreconfHook
-    wrapGAppsHook3
+    wrapGAppsHook
  ];

  buildInputs = [
--- a/pkgs/pocl/default.nix
+++ b/pkgs/pocl/default.nix
@@ -1,55 +1,48 @@
-{
-  lib,
-  llvmPackages,
-  ninja,
-  cmake,
-  hwloc,
-  ocl-icd,
-  opencl-headers,
-  getconf,
-  pkg-config,
-  spirv-llvm-translator,
-  spirv-tools,
-  libxml2, # required for statically linked llvm
-  python3,
-  writableTmpDirAsHomeHook,
-  writeText,
-  runCommand,
-  opencl-cts,
+{ lib
+, llvmPackages
+, ninja
+, cmake
+, hwloc
+, ocl-icd
+, opencl-headers
+, getconf
+, pkg-config
+, spirv-llvm-translator
+, spirv-tools
+, libxml2  # required for statically linked llvm
+, python3
+, writableTmpDirAsHomeHook

-  fetchFromGitHub,
+, fetchFromGitHub

-  useGit ? false,
-  gitUrl ? "git@gitlab-internal.bsc.es:task-awareness/pocl/pocl.git",
-  gitBranch ? "new-device",
-  gitCommit ? "dd10c2221b31223cbb796182df6a07f11c7541f5",
+, useGit ? false
+, gitUrl ? "git@gitlab-internal.bsc.es:task-awareness/pocl/pocl.git"
+, gitBranch ? "new-device"
+, gitCommit ? "dd10c2221b31223cbb796182df6a07f11c7541f5"

-  staticLLVM ? true,
-  enableICD ? true,
-  enableSPIRV ? true,
-  enableHWLOC ? true,
-  enableRemoteServer ? false,
-  enableRemoteClient ? false,
-  enableDistroVariants ? false,
+, staticLLVM ? true
+, enableICD ? true
+, enableSPIRV ? true
+, enableHWLOC ? true
+, enableRemoteServer ? false
+, enableRemoteClient ? false
+, enableDistroVariants ? false

-  lttng-ust,
-  enableLTTNG ? false,
+, lttng-ust
+, enableLTTNG ? false

-  onetbb,
-  enableTBB ? false,
+, tbb
+, enableTBB ? false

-  nosv ? null,
-  ovni ? null,
-  enableNOSV ? useGit,
-  enableOVNI ? useGit,
+, nosv ? null
+, ovni ? null
+, enableNOSV ? useGit
+, enableOVNI ? useGit

-  buildPackages,
-  targetPackages,
-  nix-update-script,
+, buildPackages
+, nix-update-script
 }:

-assert (enableNOSV || enableOVNI) -> useGit;
-
 let

  release = rec {
@@ -80,13 +73,13 @@ let
  isCross = stdenv.hostPlatform != stdenv.buildPlatform;

  featureList = lib.concatStringsSep "+" (
-    (lib.optionals enableICD [ "icd" ])
-    ++ (lib.optionals enableNOSV [ "nosv" ])
-    ++ (lib.optionals enableOVNI [ "ovni" ])
-    ++ (lib.optionals enableSPIRV [ "spirv" ])
-    ++ (lib.optionals enableTBB [ "tbb" ])
-    ++ (lib.optionals enableRemoteClient [ "server" ])
-    ++ (lib.optionals enableRemoteServer [ "client" ])
+    (lib.optionals enableICD ["icd"]) ++
+    (lib.optionals enableNOSV ["nosv"]) ++
+    (lib.optionals enableOVNI ["ovni"]) ++
+    (lib.optionals enableSPIRV ["spirv"]) ++
+    (lib.optionals enableTBB ["tbb"]) ++
+    (lib.optionals enableRemoteClient ["server"]) ++
+    (lib.optionals enableRemoteServer ["client"])
  );
 in

@@ -102,49 +95,41 @@ stdenv.mkDerivation (finalAttrs: {
  ];

  cmakeFlags = [
-    # TODO: all these are broken when cross compiling. Upstream has refactored
-    # all the cmake infra for cross compilation, but it's not in a release yet
-    (lib.cmakeOptionType "filepath" "WITH_LLVM_CONFIG" (
-      lib.getExe' buildLlvmPackages.llvm.dev "llvm-config"
-    ))
-    (lib.cmakeOptionType "filepath" "CLANG" (lib.getExe' buildLlvmPackages.clangUseLLVM "clang"))
-    (lib.cmakeOptionType "filepath" "CLANGXX" (lib.getExe' buildLlvmPackages.clangUseLLVM "clang++"))
-    (lib.cmakeOptionType "path" "CLANG_RESOURCE_DIR" "${llvmPackages.stdenv.cc}/resource-root")
+    (lib.cmakeOptionType "filepath" "WITH_LLVM_CONFIG"    (lib.getExe' buildLlvmPackages.llvm.dev     "llvm-config"))
+    (lib.cmakeOptionType "filepath" "CLANG"               (lib.getExe' buildLlvmPackages.clangUseLLVM "clang"))
+    (lib.cmakeOptionType "filepath" "CLANGXX"             (lib.getExe' buildLlvmPackages.clangUseLLVM "clang++"))
+    (lib.cmakeOptionType "path"     "CLANG_RESOURCE_DIR" "${llvmPackages.stdenv.cc}/resource-root")

    (lib.cmakeBool "ENABLE_TESTS" finalAttrs.finalPackage.doCheck)

-    (lib.cmakeBool "ENABLE_RELOCATION" true)
-    (lib.cmakeBool "ENABLE_POCL_BUILDING" true)
+    (lib.cmakeBool "ENABLE_RELOCATION"    true)
+    (lib.cmakeBool "ENABLE_POCL_BUILDING"   true)
    (lib.cmakeBool "POCL_ICD_ABSOLUTE_PATH" true)

    (lib.cmakeBool "ENABLE_TBB_DEVICE" enableTBB)
-    (lib.cmakeBool "ENABLE_ICD" enableICD)
-    (lib.cmakeBool "ENABLE_HWLOC" enableHWLOC)
-    (lib.cmakeBool "ENABLE_LTTNG" enableLTTNG)
+    (lib.cmakeBool "ENABLE_ICD"        enableICD)
+    (lib.cmakeBool "ENABLE_HWLOC"      enableHWLOC)
+    (lib.cmakeBool "ENABLE_LTTNG"      enableLTTNG)

    (lib.cmakeBool "ENABLE_REMOTE_CLIENT" enableRemoteClient)
    (lib.cmakeBool "ENABLE_REMOTE_SERVER" enableRemoteServer)

    # avoid the runtime linker pulling in a different llvm e.g. from graphics drivers
    (lib.cmakeBool "STATIC_LLVM" staticLLVM)
-  ]
-  ++ lib.optionals (enableNOSV || enableOVNI) [
-    (lib.cmakeBool "ENABLE_NOSV" enableNOSV)
-    (lib.cmakeBool "ENABLE_OVNI" enableOVNI)
-  ]
-  ++ lib.optionals (!isCross && enableDistroVariants) [
+  ] ++ lib.optionals (enableNOSV || enableOVNI) [
+    (lib.cmakeBool "ENABLE_NOSV"       enableNOSV)
+    (lib.cmakeBool "ENABLE_OVNI"       enableOVNI)
+  ] ++ lib.optionals (!isCross && enableDistroVariants) [
    (lib.cmakeFeature "KERNELLIB_HOST_CPU_VARIANTS" "distro") # TODO: check if we can do it when cross compiling
-  ]
-  ++ lib.optionals isCross [
+  ] ++ lib.optionals isCross [
    (lib.cmakeFeature "CMAKE_SYSTEM_NAME" "Linux")
    (lib.cmakeFeature "CMAKE_FIND_ROOT_PATH_MODE_PROGRAM" "NEVER")
    (lib.cmakeFeature "CMAKE_FIND_ROOT_PATH_MODE_LIBRARY" "ONLY")
    (lib.cmakeFeature "CMAKE_FIND_ROOT_PATH_MODE_INCLUDE" "ONLY")
    (lib.cmakeFeature "CMAKE_FIND_ROOT_PATH_MODE_PACKAGE" "ONLY")
-  ]
-  ++ lib.optionals stdenv.hostPlatform.isRiscV [
-    (lib.cmakeFeature "LLC_TRIPLE" "riscv64-unknown-linux-gnu")
-    (lib.cmakeFeature "LLC_HOST_CPU" "rv64g")
+  ] ++ lib.optionals stdenv.hostPlatform.isRiscV [
+    (lib.cmakeFeature "LLC_TRIPLE"       "riscv64-unknown-linux-gnu")
+    (lib.cmakeFeature "LLC_HOST_CPU"     "rv64g")
    (lib.cmakeFeature "CLANG_MARCH_FLAG" "-march=")
  ];

@@ -152,8 +137,21 @@ stdenv.mkDerivation (finalAttrs: {
  # host
  preConfigure = ''
    cmakeFlagsArray+=(
-      -DEXTRA_HOST_LD_FLAGS="${lib.escapeShellArg (builtins.readFile "${targetPackages.stdenv.cc}/nix-support/cc-ldflags")}"
-      -DEXTRA_KERNEL_FLAGS="${lib.escapeShellArg (builtins.readFile "${targetPackages.stdenv.cc}/nix-support/cc-ldflags")}"
+      -DEXTRA_HOST_LD_FLAGS="${lib.escapeShellArg (builtins.readFile "${stdenv.cc}/nix-support/cc-ldflags")}"
+      -DEXTRA_KERNEL_FLAGS="${lib.escapeShellArg (builtins.readFile "${stdenv.cc}/nix-support/cc-ldflags")}"
+    )
+  '' + lib.optionalString stdenv.hostPlatform.isRiscV ''
+     cmakeFlagsArray+=(
+      -DEXTRA_HOST_LLC_FLAGS=${lib.escapeShellArg ([
+        "-march=rv64g"
+        "-mcpu=sifive-u74"
+      ])}
+      -DEXTRA_HOST_CLANG_FLAGS=${lib.escapeShellArg ([
+        "-mabi=lp64d"
+        "-march=rv64g"
+        "-mcpu=sifive-u74"
+        "-mtune=sifive-7-series"
+      ])}
    )
  '';

@@ -169,21 +167,20 @@ stdenv.mkDerivation (finalAttrs: {
    opencl-headers
    llvmPackages.libclang
    llvmPackages.llvm
-  ]
-  ++ lib.optionals staticLLVM [ libxml2 ]
-  ++ lib.optionals enableNOSV [ nosv ]
-  ++ lib.optionals enableOVNI [ ovni ]
-  ++ lib.optionals enableHWLOC [ hwloc ]
-  ++ lib.optionals enableTBB [ onetbb ]
-  ++ lib.optionals enableICD [ ocl-icd ]
-  ++ lib.optionals enableLTTNG [ lttng-ust ]
-  ++ lib.optionals enableSPIRV [
+  ] ++ lib.optionals staticLLVM [ libxml2 ]
+  ++ lib.optionals enableNOSV   [ nosv ]
+  ++ lib.optionals enableOVNI   [ ovni ]
+  ++ lib.optionals enableHWLOC  [ hwloc ]
+  ++ lib.optionals enableTBB    [ tbb ]
+  ++ lib.optionals enableICD    [ ocl-icd ]
+  ++ lib.optionals enableLTTNG  [ lttng-ust ]
+  ++ lib.optionals enableSPIRV  [
    (spirv-llvm-translator.override { inherit (llvmPackages) llvm; })
    spirv-tools
  ];

  nativeInstallCheckInputs = [
-    writableTmpDirAsHomeHook # needed for POCL_CACHE_DIR
+    writableTmpDirAsHomeHook
  ];

  doInstallCheck = true;
@@ -197,46 +194,20 @@ stdenv.mkDerivation (finalAttrs: {
    runHook postInstallCheck
  '';

-  setupHook = lib.optionalDrvAttr enableICD (
-    writeText "setup-hook" ''
-      addToSearchPath OCL_ICD_VENDORS @out@/etc/OpenCL/vendors
-    ''
-  );
+  setupHook = ./setup-hook.sh;

-  passthru =
-    let
-      self = finalAttrs.finalPackage;
-    in
-    {
-      updateScript = nix-update-script { };
-      git = self.override { useGit = true; };
+  passthru = {
+    updateScript = nix-update-script { };
+    git = finalAttrs.finalPackage.override { useGit = true; };
+    test = finalAttrs.finalPackage.overrideAttrs { doCheck = true; };
+  };

-      withICD = enableICD;
+  requiredSystemFeatures = lib.optionals (finalAttrs.finalPackage.doCheck && enableHWLOC) [ "sys-devices" ];

-      test = {
-        # Run builtin tests (causes a rebuild)
-        self = self.overrideAttrs { doCheck = true; };
-
-        # Run basic test from Khronos OpenCL Conformance Test Suite
-        # WARN: despite its name, test_basic is very exhaustive, and can take more
-        # than 1 hour in a marenostrum5 node.
-        cts =
-          assert enableICD;
-          lib.genAttrs [ "api" "basic" "c11_atomics" "printf" "svm" ] (
-            name:
-            runCommand "pocl-cts-test_${name}" {
-              nativeBuildInputs = [ self ];
-              requiredSystemFeatures = [ "sys-devices" ];
-              env = {
-                POCL_DEBUG = "error,warn";
-                POCL_CACHE_DIR = "/build/pocl_cache";
-              };
-            } "${opencl-cts}/bin/Release/test_${name} | tee $out"
-          );
-      };
-    };
-
-  env.HWLOC_SYNTHETIC = lib.optionalDrvAttr enableHWLOC "node:1 core:1 pu:1";
+  preCheck = ''
+    export POCL_DEBUG=error,warn
+    export NIX_DEBUG=1
+  '';

  propagatedBuildInputs = [ stdenv.cc.cc ];

--- a/pkgs/pocl/setup-hook.sh
+++ b/pkgs/pocl/setup-hook.sh
@@ -0,0 +1,6 @@
+preCheckHooks+=('setupPoclCheck')
+preInstallCheckHooks+=('setupPoclCheck')
+
+setupPoclCheck () {
+  export OCL_ICD_VENDORS="@out@/etc/OpenCL/vendors"
+}
--- a/pkgs/sonar/default.nix
+++ b/pkgs/sonar/default.nix
@@ -35,6 +35,5 @@ stdenv.mkDerivation rec {
    maintainers = with lib.maintainers.bsc; [ rarias ];
    platforms = lib.platforms.linux;
    license = lib.licenses.mit;
-    cross = true;
  };
 }
--- a/pkgs/tacuda/default.nix
+++ b/pkgs/tacuda/default.nix
@@ -1,72 +0,0 @@
-{
-  backendStdenv,
-  fetchFromGitHub,
-  automake,
-  autoconf,
-  libtool,
-  gnumake,
-  autoreconfHook,
-  boost,
-  cudatoolkit,
-  libcublas,
-  cuda_cudart,
-
-  useGit ? false,
-  gitUrl ? "git@gitlab-internal.bsc.es:task-awareness/tacuda/tacuda.git",
-  gitBranch ? "main",
-  gitCommit ? "35234f9445e6149a2bd38d119841e2485d6ee05e",
-}:
-
-let
-
-  release_ver = "2.1.0";
-  release = {
-    version = release_ver;
-    src = fetchFromGitHub {
-      owner = "bsc-pm";
-      repo = "tacuda";
-      rev = release_ver;
-      hash = "sha256-Cj3EiLVJSLvRv0ydeg7Vp4SpkniEqHkcWF+YOJQ8EcM=";
-    };
-  };
-
-  git = rec {
-    version = src.shortRev;
-    src = builtins.fetchGit {
-      url = gitUrl;
-      ref = gitBranch;
-      rev = gitCommit;
-    };
-  };
-
-  source = if (useGit) then git else release;
-
-in
-
-backendStdenv.mkDerivation {
-  pname = "tacuda";
-  inherit (source) src version;
-
-  enableParallelBuilding = true;
-  separateDebugInfo = true;
-  strictDeps = true;
-
-  nativeBuildInputs = [
-    autoreconfHook
-    automake
-    autoconf
-    libtool
-    gnumake
-  ];
-
-  patches = [ ./fix_config.patch ];
-
-  configureFlags = [ "--with-cuda-include=${cudatoolkit}/include" ];
-
-  buildInputs = [
-    boost
-    libcublas
-    cuda_cudart
-  ];
-
-}
--- a/pkgs/tacuda/fix_config.patch
+++ b/pkgs/tacuda/fix_config.patch
@@ -1,13 +0,0 @@
-diff --git a/m4/cuda.m4 b/m4/cuda.m4
-index 23f5c94..8f9b534 100644
--- a/m4/cuda.m4
-+++ b/m4/cuda.m4
-@@ -40,7 +40,7 @@ search_libs="cuda cublas cudart"
- required_libs=""
- 
- m4_foreach([function],
-           [cuInit,
-+           [
- 	    cublasSgemm,
-             cudaStreamCreate,
-             cudaLaunchKernel,
--- a/pkgs/tagaspi/default.nix
+++ b/pkgs/tagaspi/default.nix
@@ -5,14 +5,23 @@
 , automake
 , autoconf
 , libtool
+, mpi
 , autoreconfHook
 , gpi-2
 , boost
 , numactl
 , rdma-core
 , gfortran
+, symlinkJoin
 }:

+let
+  mpiAll = symlinkJoin {
+    name = "mpi-all";
+    paths = [ mpi.all ];
+  };
+in
+
 stdenv.mkDerivation rec {
  pname = "tagaspi";
  enableParallelBuilding = true;
@@ -26,18 +35,16 @@ stdenv.mkDerivation rec {
    hash = "sha256-RGG/Re2uM293HduZfGzKUWioDtwnSYYdfeG9pVrX9EM=";
  };

-  nativeBuildInputs = [
+  buildInputs = [
    autoreconfHook
    automake
    autoconf
    libtool
-    gfortran
-  ];
-
-  buildInputs = [
    boost
    numactl
    rdma-core
+    gfortran
+    mpiAll
  ];

  dontDisableStatic = true;
@@ -56,6 +63,5 @@ stdenv.mkDerivation rec {
    maintainers = with lib.maintainers.bsc; [ rarias ];
    platforms = lib.platforms.linux;
    license = lib.licenses.gpl3Plus;
-    cross = false; # gpi-2 cannot cross
  };
 }
--- a/pkgs/tampi/default.nix
+++ b/pkgs/tampi/default.nix
@@ -68,6 +68,5 @@ in stdenv.mkDerivation {
    maintainers = with lib.maintainers.bsc; [ rarias ];
    platforms = lib.platforms.linux;
    license = lib.licenses.gpl3Plus;
-    cross = true;
  };
 }
--- a/pkgs/taopencl/default.nix
+++ b/pkgs/taopencl/default.nix
@@ -1,46 +0,0 @@
-{
-  stdenv,
-  automake,
-  autoconf,
-  libtool,
-  gnumake,
-  boost,
-  mpi,
-  gcc,
-  autoreconfHook,
-  ocl-icd,
-  opencl-headers,
-}:
-
-stdenv.mkDerivation (finalAttrs: {
-  pname = "taopencl";
-  version = finalAttrs.src.shortRev;
-
-  src = builtins.fetchGit {
-    url = "git@gitlab-internal.bsc.es:task-awareness/taopencl/taopencl.git";
-    ref = "master";
-    rev = "c3b7b32ae8fa4af7ceff598532a881f8f1490aaf";
-  };
-
-  enableParallelBuilding = true;
-  separateDebugInfo = true;
-
-  configureFlags = [
-    "--with-opencl-lib=${ocl-icd}/lib"
-    "--with-opencl-include=${opencl-headers}/include"
-  ];
-
-  buildInputs = [
-    autoreconfHook
-    automake
-    autoconf
-    libtool
-    gnumake
-    boost
-    mpi
-    gcc
-  ];
-
-  dontDisableStatic = true;
-  hardeningDisable = [ "all" ];
-})
--- a/pkgs/upc-qaire-exporter/default.nix
+++ b/pkgs/upc-qaire-exporter/default.nix
@@ -1,11 +1,9 @@
 { python3Packages, lib }:

-python3Packages.buildPythonApplication {
+python3Packages.buildPythonApplication rec {
  pname = "upc-qaire-exporter";
  version = "1.0";

-  pyproject = true;
-
  src = ./.;

  doCheck = false;
--- a/test/compilers/opencl.c
+++ b/test/compilers/opencl.c
@@ -1,127 +0,0 @@
-#include <CL/cl.h>
-#include <stdio.h>
-#include <stdlib.h>
-#include <string.h>
-
-#define BUF_LEN 128
-
-cl_int exit_err = CL_SUCCESS;
-
-#define CHECK(cmd)                                                             \
-  do {                                                                         \
-    cl_int err = cmd;                                                          \
-    if (err != CL_SUCCESS) {                                                   \
-      printf("[ERROR] " #cmd " (Error code: %d)\n"                             \
-             "@ "__FILE__                                                      \
-             ":%d",                                                            \
-             err, __LINE__);                                                   \
-      exit_err = err;                                                          \
-      goto cleanup;                                                            \
-    }                                                                          \
-  } while (0)
-
-const char *kernel_source = "__kernel void vector_add(__global const float *a, "
-                            "__global const float *b, __global float *c) {\n"
-                            "    int gid = get_global_id(0);\n"
-                            "    c[gid] = a[gid] + b[gid];\n"
-                            "}\n";
-
-cl_int test_kernel_compilation(cl_platform_id platform) {
-  cl_device_id device = NULL;
-  cl_context context = NULL;
-  cl_program program = NULL;
-  cl_int err = CL_SUCCESS;
-  char device_name[BUF_LEN];
-
-  // Get first device for this platform
-  CHECK(clGetDeviceIDs(platform, CL_DEVICE_TYPE_ALL, 1, &device, NULL));
-
-  // Get device name
-  CHECK(clGetDeviceInfo(device, CL_DEVICE_NAME, sizeof(device_name),
-                        device_name, NULL));
-  printf("    Device: %s\n", device_name);
-
-  context = clCreateContext(NULL, 1, &device, NULL, NULL, &err);
-  CHECK(err);
-
-  program = clCreateProgramWithSource(context, 1, &kernel_source, NULL, &err);
-  CHECK(err);
-
-  err = clBuildProgram(program, 1, &device, NULL, NULL, NULL);
-  if (err != CL_SUCCESS) {
-    printf("      [ERROR] Kernel compilation failed (Error code: %d)\n", err);
-
-    // Build log
-    size_t log_size;
-    CHECK(clGetProgramBuildInfo(program, device, CL_PROGRAM_BUILD_LOG, 0, NULL,
-                                &log_size));
-    char *log = (char *)malloc(log_size);
-    CHECK(clGetProgramBuildInfo(program, device, CL_PROGRAM_BUILD_LOG, log_size,
-                                log, NULL));
-    printf("      Build log:\n%s\n", log);
-    free(log);
-    goto cleanup;
-  }
-
-  printf("      [OK] Kernel compiled successfully!\n");
-
-cleanup:
-  if (program)
-    clReleaseProgram(program);
-  if (context)
-    clReleaseContext(context);
-  printf("\n");
-
-  return exit_err;
-}
-
-int main() {
-  cl_uint num_platforms;
-  cl_platform_id *platforms = NULL;
-
-  // Get number of platforms
-  CHECK(clGetPlatformIDs(0, NULL, &num_platforms));
-
-  printf("Found %d OpenCL platform(s)\n\n", num_platforms);
-
-  if (num_platforms == 0) {
-    printf("No OpenCL platforms found!\n");
-    return EXIT_FAILURE;
-  }
-
-  // Allocate memory for platforms
-  platforms = (cl_platform_id *)malloc(sizeof(cl_platform_id) * num_platforms);
-
-  // Get platform IDs
-  CHECK(clGetPlatformIDs(num_platforms, platforms, NULL));
-
-  // Query each platform and test kernel compilation
-  for (cl_uint i = 0; i < num_platforms; i++) {
-    char platform_name[BUF_LEN];
-    char platform_vendor[BUF_LEN];
-    char platform_version[BUF_LEN];
-
-    CHECK(clGetPlatformInfo(platforms[i], CL_PLATFORM_NAME,
-                            sizeof(platform_name), platform_name, NULL));
-    CHECK(clGetPlatformInfo(platforms[i], CL_PLATFORM_VENDOR,
-                            sizeof(platform_vendor), platform_vendor, NULL));
-    CHECK(clGetPlatformInfo(platforms[i], CL_PLATFORM_VERSION,
-                            sizeof(platform_version), platform_version, NULL));
-
-    printf("Platform %d: %s\n", i, platform_name);
-    printf("  Vendor: %s\n", platform_vendor);
-    printf("  Version: %s\n", platform_version);
-
-    // Test kernel compilation
-    CHECK(test_kernel_compilation(platforms[i]));
-  }
-
-cleanup:
-  if (platforms)
-    free(platforms);
-
-  if (exit_err == CL_SUCCESS)
-    return EXIT_SUCCESS;
-
-  return EXIT_FAILURE;
-}
--- a/test/compilers/opencl.nix
+++ b/test/compilers/opencl.nix
@@ -1,104 +0,0 @@
-{
-  stdenv,
-  ocl-icd,
-  opencl-headers,
-  pocl,
-  clinfo,
-  runCommand,
-  lib,
-}:
-
-stdenv.mkDerivation (finalAttrs: {
-  pname = "opencl-pocl-test";
-  version = "1.0.0";
-
-  src = ./opencl.c;
-
-  dontUnpack = true;
-  dontConfigure = true;
-
-  buildInputs = [
-    ocl-icd
-    opencl-headers
-  ];
-
-  buildPhase = ''
-    runHook preBuild
-
-    $CC -Wall -Wextra -D CL_TARGET_OPENCL_VERSION=100 $src -o ocl-hello -lOpenCL
-
-    runHook postBuild
-  '';
-
-  installPhase = ''
-    runHook preInstall
-
-    mkdir -p $out/bin
-    cp ocl-hello $out/bin
-
-    runHook postInstall
-  '';
-
-  passthru = {
-    test-icd =
-      runCommand "custom-clinfo"
-        {
-          nativeBuildInputs =
-            assert !(lib.hasPrefix "pocl" ocl-icd.pname);
-            [
-              clinfo
-              finalAttrs.finalPackage
-              pocl
-            ];
-
-          env = {
-            POCL_DEBUG = "error,warn";
-            POCL_CACHE_DIR = "/build/pocl_cache";
-          };
-
-          requiredSystemFeatures = [ "sys-devices" ];
-        }
-
-        ''
-          set -x
-
-          mkdir $out
-
-          clinfo -l >$out/clinfo
-          clinfo >$out/clinfo-full
-
-          ocl-hello >$out/hello
-
-          for i in $out/*; do
-            grep "Portable Computing Language" $i
-          done
-
-          echo $OCL_ICD_VENDORS >$out/env
-
-          grep "pocl.*/etc/OpenCL/vendors" $out/env
-
-          set +x
-        '';
-    # this needs: ocl-icd = pocl-noicd
-    test-noicd =
-      runCommand "custom-clinfo"
-        {
-          nativeBuildInputs = [
-            finalAttrs.finalPackage
-          ];
-
-          env = {
-            POCL_DEBUG = "error,warn";
-            POCL_CACHE_DIR = "/build/pocl_cache";
-          };
-
-          requiredSystemFeatures = [ "sys-devices" ];
-        }
-
-        ''
-          ocl-hello >$out
-
-          grep "Portable Computing Language" $out
-        '';
-  };
-})
--- a/test/compilers/pocl.nix
+++ b/test/compilers/pocl.nix
@@ -2,26 +2,25 @@
  runCommand,
  pocl,
  clinfo,
+  writableTmpDirAsHomeHook,
 }:

 runCommand "clinfo-pocl"
  {
    nativeBuildInputs = [
      clinfo
-      pocl
+      writableTmpDirAsHomeHook
    ];

    requiredSystemFeatures = [ "sys-devices" ];

    env = {
      POCL_DEBUG = "error,warn";
-      POCL_CACHE_DIR = "/build/pocl_cache";
+      OCL_ICD_VENDORS = "${pocl}/etc/OpenCL/vendors";
    };
  }
  ''
-    echo $OCL_ICD_VENDORS
-    clinfo >$out
-
-    # check that we have PoCL:
-    grep "Portable Computing Language" $out
+    set -x
+    clinfo | tee $out
+    set +x
  ''
Author	SHA1	Message	Date
Aleix Boné	9a7387289e	pocl: add passthru test that sets doCheck	2025-10-28 17:02:27 +01:00
Aleix Boné	b3f2199ab6	pocl: tweak configure flags	2025-10-28 17:02:26 +01:00
Aleix Boné	3bbf6a3d6e	pocl: v7.0 -> v7.1	2025-10-28 17:02:26 +01:00
Aleix Boné	485db313ea	pocl: add simple clinfo test	2025-10-28 17:02:26 +01:00
Aleix Boné	880e8a80b4	pocl: init at 7.0	2025-10-28 17:02:26 +01:00