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37 Commits

Author SHA1 Message Date
a0f2e2639b Add install check for OpenMP{,-V} 2025-12-10 15:56:37 +01:00
bda1f10dd7 Fix openmp buildInputs 2025-12-10 15:56:37 +01:00
734b3f0450 Remove unused sys-devices requirement in ld test 2025-12-10 15:56:36 +01:00
109ec07800 Enable papi when cross-compiling 2025-12-10 15:56:36 +01:00
881a08dd37 Fix papi cross compilation 2025-12-10 15:56:36 +01:00
fad79643fa Use pkg-config instead of papi_version_check 2025-12-10 15:56:36 +01:00
1e36c3b204 Fix cudainfo buildInputs 2025-12-10 15:56:33 +01:00
972518c2d8 Set strictDeps to true on all our packages 2025-12-10 15:56:33 +01:00
ee9af71da0 Remove conflicting definitions in amd-uprof-driver
See: https://lkml.org/lkml/2025/4/9/1709
2025-12-10 14:34:53 +01:00
1d3bda33a0 Mark mcxx as broken and remove from package list 2025-12-03 10:15:17 +01:00
87bf095dae Fix moved package linuxPackages.perf is now perf 2025-12-03 10:15:17 +01:00
2264e15102 Fix replaced nixseparatedebuginfod
nixseparatedebuginfod has been replaced by nixseparatedebuginfod2
2025-12-03 10:15:17 +01:00
209f8a582e Use standard gcc for intel packages
This reverts 26f52aa27d
2025-12-03 10:15:16 +01:00
1457d85f4c Fix renamed option watchdog.runtimeTime
The option 'systemd.watchdog.runtimeTime' has been renamed to
'systemd.settings.Manager.RuntimeWatchdogSec'.
2025-12-02 17:53:14 +01:00
ad812ea32d Replace wrapGAppsHook with wrapGAppsHook3 2025-12-02 17:53:13 +01:00
5bc928c407 Fix changed cudaPackages.cuda_cudart output
See: https://github.com/NixOS/nixpkgs/pull/437723
2025-12-02 17:53:13 +01:00
eb9358abab Set pyproject=true in buildPythonApplication
The buildPythonPackage and buildPythonApplication functions now
  require an explicit format attribute. Previously the default format
  used setuptools and called setup.py from the source tree, which is
  deprecated. The modern alternative is to configure pyproject = true
  with build-system = [ setuptools ].
2025-12-02 17:53:13 +01:00
d2025d35d9 Fix renamed llvm bintools
Moved from llvmPackages_latest.tools.bintools to
llvmPackages_latest.bintools
2025-12-02 17:53:13 +01:00
6e089344da Upgrade nixpkgs to 25.11 2025-12-02 17:53:13 +01:00
a173af654f Fix osu cross-compilation
Reviewed-by: Rodrigo Arias Mallo <rodrigo.arias@bsc.es>
2025-10-31 16:23:46 +01:00
2fff7e4a7b Set mpich default compilers from targetPackages
Reviewed-by: Rodrigo Arias Mallo <rodrigo.arias@bsc.es>
2025-10-31 16:23:46 +01:00
a761b73336 Enable meta.cross for mpich related packages
Reviewed-by: Rodrigo Arias Mallo <rodrigo.arias@bsc.es>
2025-10-31 16:23:46 +01:00
86eb796771 Disable meta.cross for gpi-2 and tagaspi
Reviewed-by: Rodrigo Arias Mallo <rodrigo.arias@bsc.es>
2025-10-31 16:23:46 +01:00
08633435cf Fix nativeBuildInputs for tagaspi
Reviewed-by: Rodrigo Arias Mallo <rodrigo.arias@bsc.es>
2025-10-31 16:23:46 +01:00
39d64456a4 Fix nativeBuildInputs for gpi-2
Reviewed-by: Rodrigo Arias Mallo <rodrigo.arias@bsc.es>
2025-10-31 16:23:46 +01:00
410040a4a0 Fix mpich cross compilation (disable fortran)
Reviewed-by: Rodrigo Arias Mallo <rodrigo.arias@bsc.es>
2025-10-31 16:23:46 +01:00
fc69ef3217 Enable pam_slurm_adopt in all compute nodes
Prevents access to owl1 and owl2 too if the user doesn't have any jobs
running there.

Reviewed-by: Aleix Boné <abonerib@bsc.es>
2025-10-31 11:41:50 +01:00
1d025f7a38 Don't suspend owl compute nodes
Currently the owl nodes are located on top of the rack and turning them
off causes a high temperature increase at that region, which accumulates
heat from the whole rack. To maximize airflow we will leave them on at
all times. This also makes allocations immediate at the extra cost of
around 200 W.

In the future, if we include more nodes in SLURM we can configure those
to turn off if needed.

Fixes: rarias/jungle#156
Reviewed-by: Aleix Boné <abonerib@bsc.es>
2025-10-31 11:41:44 +01:00
7989779c8f Filter out packages by platform from crossSet
Reviewed-by: Rodrigo Arias Mallo <rodrigo.arias@bsc.es>
Tested-by: Rodrigo Arias Mallo <rodrigo.arias@bsc.es>
2025-10-31 11:21:13 +01:00
7d721084a7 Add meta to cudainfo
Reviewed-by: Rodrigo Arias Mallo <rodrigo.arias@bsc.es>
2025-10-31 11:20:01 +01:00
796d34a549 Set amd-uprof platforms to x86_64-linux only
Reviewed-by: Rodrigo Arias Mallo <rodrigo.arias@bsc.es>
2025-10-31 11:19:57 +01:00
5ff1b1343b Add nixgen to all machines
Reviewed-by: Aleix Boné <abonerib@bsc.es>
2025-10-29 16:28:05 +01:00
c5cc13fad8 Add nixgen package
Reviewed-by: Aleix Boné <abonerib@bsc.es>
2025-10-29 16:27:56 +01:00
2e09314a7e Update OmpSs-2 LLVM to 2025.11
Reviewed-by: Aleix Boné <abonerib@bsc.es>
Tested-by: Rodrigo Arias Mallo <rodrigo.arias@bsc.es>
2025-10-29 16:22:57 +01:00
217d9c1fc0 Update NODES to 1.4
Reviewed-by: Aleix Boné <abonerib@bsc.es>
2025-10-29 16:21:46 +01:00
f47ab7757e Update nOS-V to 4.0.0
Reviewed-by: Aleix Boné <abonerib@bsc.es>
2025-10-29 16:21:43 +01:00
4b265c071e Update ovni to 1.13.0
Reviewed-by: Aleix Boné <abonerib@bsc.es>
2025-10-29 16:21:32 +01:00
48 changed files with 515 additions and 264 deletions

8
flake.lock generated
View File

@@ -2,16 +2,16 @@
"nodes": { "nodes": {
"nixpkgs": { "nixpkgs": {
"locked": { "locked": {
"lastModified": 1752436162, "lastModified": 1764522689,
"narHash": "sha256-Kt1UIPi7kZqkSc5HVj6UY5YLHHEzPBkgpNUByuyxtlw=", "narHash": "sha256-SqUuBFjhl/kpDiVaKLQBoD8TLD+/cTUzzgVFoaHrkqY=",
"owner": "NixOS", "owner": "NixOS",
"repo": "nixpkgs", "repo": "nixpkgs",
"rev": "dfcd5b901dbab46c9c6e80b265648481aafb01f8", "rev": "8bb5646e0bed5dbd3ab08c7a7cc15b75ab4e1d0f",
"type": "github" "type": "github"
}, },
"original": { "original": {
"owner": "NixOS", "owner": "NixOS",
"ref": "nixos-25.05", "ref": "nixos-25.11",
"repo": "nixpkgs", "repo": "nixpkgs",
"type": "github" "type": "github"
} }

View File

@@ -1,6 +1,6 @@
{ {
inputs = { inputs = {
nixpkgs.url = "github:NixOS/nixpkgs/nixos-25.05"; nixpkgs.url = "github:NixOS/nixpkgs/nixos-25.11";
}; };
outputs = { self, nixpkgs, ... }: outputs = { self, nixpkgs, ... }:

View File

@@ -1,12 +1,12 @@
{ pkgs, config, ... }: { pkgs, ... }:
{ {
environment.systemPackages = with pkgs; [ environment.systemPackages = with pkgs; [
vim wget git htop tmux pciutils tcpdump ripgrep nix-index nixos-option vim wget git htop tmux pciutils tcpdump ripgrep nix-index nixos-option
nix-diff ipmitool freeipmi ethtool lm_sensors cmake gnumake file tree nix-diff ipmitool freeipmi ethtool lm_sensors cmake gnumake file tree
ncdu config.boot.kernelPackages.perf ldns pv ncdu perf ldns pv
# From bsckgs overlay # From jungle overlay
osumb osumb nixgen
]; ];
programs.direnv.enable = true; programs.direnv.enable = true;

View File

@@ -5,5 +5,5 @@
boot.kernelModules = [ "ipmi_watchdog" ]; boot.kernelModules = [ "ipmi_watchdog" ];
# Enable systemd watchdog with 30 s interval # Enable systemd watchdog with 30 s interval
systemd.watchdog.runtimeTime = "30s"; systemd.settings.Manager.RuntimeWatchdogSec = 30;
} }

View File

@@ -93,20 +93,4 @@
wantedBy = [ "multi-user.target" ]; wantedBy = [ "multi-user.target" ];
serviceConfig.ExecStart = script; serviceConfig.ExecStart = script;
}; };
# Only allow SSH connections from users who have a SLURM allocation
# See: https://slurm.schedmd.com/pam_slurm_adopt.html
security.pam.services.sshd.rules.account.slurm = {
control = "required";
enable = true;
modulePath = "${pkgs.slurm}/lib/security/pam_slurm_adopt.so";
args = [ "log_level=debug5" ];
order = 999999; # Make it last one
};
# Disable systemd session (pam_systemd.so) as it will conflict with the
# pam_slurm_adopt.so module. What happens is that the shell is first adopted
# into the slurmstepd task and then into the systemd session, which is not
# what we want, otherwise it will linger even if all jobs are gone.
security.pam.services.sshd.startSession = lib.mkForce false;
} }

View File

@@ -1,3 +1,10 @@
{ {
services.nixseparatedebuginfod.enable = true; services.nixseparatedebuginfod2 = {
enable = true;
substituters = [
"local:"
"https://cache.nixos.org"
"http://hut/cache"
];
};
} }

View File

@@ -1,4 +1,4 @@
{ lib, ... }: { lib, pkgs, ... }:
{ {
imports = [ imports = [
@@ -21,4 +21,20 @@
}; };
services.slurm.client.enable = true; services.slurm.client.enable = true;
# Only allow SSH connections from users who have a SLURM allocation
# See: https://slurm.schedmd.com/pam_slurm_adopt.html
security.pam.services.sshd.rules.account.slurm = {
control = "required";
enable = true;
modulePath = "${pkgs.slurm}/lib/security/pam_slurm_adopt.so";
args = [ "log_level=debug5" ];
order = 999999; # Make it last one
};
# Disable systemd session (pam_systemd.so) as it will conflict with the
# pam_slurm_adopt.so module. What happens is that the shell is first adopted
# into the slurmstepd task and then into the systemd session, which is not
# what we want, otherwise it will linger even if all jobs are gone.
security.pam.services.sshd.startSession = lib.mkForce false;
} }

View File

@@ -1,31 +1,6 @@
{ config, pkgs, ... }: { config, pkgs, ... }:
let {
suspendProgram = pkgs.writeShellScript "suspend.sh" ''
exec 1>>/var/log/power_save.log 2>>/var/log/power_save.log
set -x
export "PATH=/run/current-system/sw/bin:$PATH"
echo "$(date) Suspend invoked $0 $*" >> /var/log/power_save.log
hosts=$(scontrol show hostnames $1)
for host in $hosts; do
echo Shutting down host: $host
ipmitool -I lanplus -H ''${host}-ipmi -P "" -U "" chassis power off
done
'';
resumeProgram = pkgs.writeShellScript "resume.sh" ''
exec 1>>/var/log/power_save.log 2>>/var/log/power_save.log
set -x
export "PATH=/run/current-system/sw/bin:$PATH"
echo "$(date) Suspend invoked $0 $*" >> /var/log/power_save.log
hosts=$(scontrol show hostnames $1)
for host in $hosts; do
echo Starting host: $host
ipmitool -I lanplus -H ''${host}-ipmi -P "" -U "" chassis power on
done
'';
in {
services.slurm = { services.slurm = {
controlMachine = "apex"; controlMachine = "apex";
clusterName = "jungle"; clusterName = "jungle";
@@ -59,16 +34,6 @@ in {
# the resources. Use the task/cgroup plugin to enable process containment. # the resources. Use the task/cgroup plugin to enable process containment.
TaskPlugin=task/affinity,task/cgroup TaskPlugin=task/affinity,task/cgroup
# Power off unused nodes until they are requested
SuspendProgram=${suspendProgram}
SuspendTimeout=60
ResumeProgram=${resumeProgram}
ResumeTimeout=300
SuspendExcNodes=fox
# Turn the nodes off after 1 hour of inactivity
SuspendTime=3600
# Reduce port range so we can allow only this range in the firewall # Reduce port range so we can allow only this range in the firewall
SrunPortRange=60000-61000 SrunPortRange=60000-61000

View File

@@ -17,7 +17,6 @@ let
clangOmpss2NodesOmpv = callPackage ./pkgs/llvm-ompss2/default.nix { ompss2rt = final.nodes; openmp = final.openmpv; }; clangOmpss2NodesOmpv = callPackage ./pkgs/llvm-ompss2/default.nix { ompss2rt = final.nodes; openmp = final.openmpv; };
clangOmpss2Unwrapped = callPackage ./pkgs/llvm-ompss2/clang.nix { }; clangOmpss2Unwrapped = callPackage ./pkgs/llvm-ompss2/clang.nix { };
cudainfo = prev.callPackage ./pkgs/cudainfo/default.nix { }; cudainfo = prev.callPackage ./pkgs/cudainfo/default.nix { };
clsparse = callPackage ./pkgs/clsparse/package.nix { };
#extrae = callPackage ./pkgs/extrae/default.nix { }; # Broken and outdated #extrae = callPackage ./pkgs/extrae/default.nix { }; # Broken and outdated
gpi-2 = callPackage ./pkgs/gpi-2/default.nix { }; gpi-2 = callPackage ./pkgs/gpi-2/default.nix { };
intelPackages_2023 = callPackage ./pkgs/intel-oneapi/2023.nix { }; intelPackages_2023 = callPackage ./pkgs/intel-oneapi/2023.nix { };
@@ -31,13 +30,15 @@ let
amd-uprof-driver = _prev.callPackage ./pkgs/amd-uprof/driver.nix { }; amd-uprof-driver = _prev.callPackage ./pkgs/amd-uprof/driver.nix { };
}); });
lmbench = callPackage ./pkgs/lmbench/default.nix { }; lmbench = callPackage ./pkgs/lmbench/default.nix { };
mcxx = callPackage ./pkgs/mcxx/default.nix { }; # Broken and unmantained
# mcxx = callPackage ./pkgs/mcxx/default.nix { };
meteocat-exporter = prev.callPackage ./pkgs/meteocat-exporter/default.nix { }; meteocat-exporter = prev.callPackage ./pkgs/meteocat-exporter/default.nix { };
mpi = final.mpich; # Set MPICH as default mpi = final.mpich; # Set MPICH as default
mpich = callPackage ./pkgs/mpich/default.nix { mpich = prev.mpich; }; mpich = callPackage ./pkgs/mpich/default.nix { mpich = prev.mpich; };
nanos6 = callPackage ./pkgs/nanos6/default.nix { }; nanos6 = callPackage ./pkgs/nanos6/default.nix { };
nanos6Debug = final.nanos6.override { enableDebug = true; }; nanos6Debug = final.nanos6.override { enableDebug = true; };
nixtools = callPackage ./pkgs/nixtools/default.nix { }; nixtools = callPackage ./pkgs/nixtools/default.nix { };
nixgen = callPackage ./pkgs/nixgen/default.nix { };
# Broken because of pkgsStatic.libcap # Broken because of pkgsStatic.libcap
# See: https://github.com/NixOS/nixpkgs/pull/268791 # See: https://github.com/NixOS/nixpkgs/pull/268791
#nix-wrap = callPackage ./pkgs/nix-wrap/default.nix { }; #nix-wrap = callPackage ./pkgs/nix-wrap/default.nix { };
@@ -48,6 +49,7 @@ let
osumb = callPackage ./pkgs/osu/default.nix { }; osumb = callPackage ./pkgs/osu/default.nix { };
ovni = callPackage ./pkgs/ovni/default.nix { }; ovni = callPackage ./pkgs/ovni/default.nix { };
ovniGit = final.ovni.override { useGit = true; }; ovniGit = final.ovni.override { useGit = true; };
papi = callPackage ./pkgs/papi/default.nix { papi = prev.papi; };
paraverKernel = callPackage ./pkgs/paraver/kernel.nix { }; paraverKernel = callPackage ./pkgs/paraver/kernel.nix { };
prometheus-slurm-exporter = prev.callPackage ./pkgs/slurm-exporter/default.nix { }; prometheus-slurm-exporter = prev.callPackage ./pkgs/slurm-exporter/default.nix { };
#pscom = callPackage ./pkgs/parastation/pscom.nix { }; # Unmaintaned #pscom = callPackage ./pkgs/parastation/pscom.nix { }; # Unmaintaned
@@ -101,14 +103,16 @@ let
pkgsTopLevel = filterAttrs (_: isDerivation) bscPkgs; pkgsTopLevel = filterAttrs (_: isDerivation) bscPkgs;
# Native build in that platform doesn't imply cross build works # Native build in that platform doesn't imply cross build works
canCrossCompile = platform: pkg: canCrossCompile = platform: default: pkg:
(isDerivation pkg) && (isDerivation pkg) &&
# Must be defined explicitly # If meta.cross is undefined, use default
(pkg.meta.cross or false) && (pkg.meta.cross or default) &&
(meta.availableOn platform pkg); (meta.availableOn final.pkgsCross.${platform}.stdenv.hostPlatform pkg);
# For now only RISC-V # For now only RISC-V
crossSet = { riscv64 = final.pkgsCross.riscv64.bsc.pkgsTopLevel; }; crossSet = genAttrs [ "riscv64" ] (platform:
filterAttrs (_: canCrossCompile platform true)
final.pkgsCross.${platform}.bsc.pkgsTopLevel);
buildList = name: paths: buildList = name: paths:
final.runCommandLocal name { } '' final.runCommandLocal name { } ''
@@ -128,7 +132,7 @@ let
# For now only RISC-V # For now only RISC-V
crossList = buildList "ci-cross" crossList = buildList "ci-cross"
(filter (filter
(canCrossCompile final.pkgsCross.riscv64.stdenv.hostPlatform) (canCrossCompile "riscv64" false) # opt-in (pkgs with: meta.cross = true)
(builtins.attrValues crossSet.riscv64)); (builtins.attrValues crossSet.riscv64));
in bscPkgs // { in bscPkgs // {

View File

@@ -47,6 +47,7 @@ in
inherit version; inherit version;
src = uprofSrc; src = uprofSrc;
dontStrip = true; dontStrip = true;
strictDeps = true;
phases = [ "installPhase" "fixupPhase" ]; phases = [ "installPhase" "fixupPhase" ];
nativeBuildInputs = [ autoPatchelfHook radare2 ]; nativeBuildInputs = [ autoPatchelfHook radare2 ];
buildInputs = [ buildInputs = [
@@ -90,7 +91,7 @@ in
meta = { meta = {
description = "Performance analysis tool-suite for x86 based applications"; description = "Performance analysis tool-suite for x86 based applications";
homepage = "https://www.amd.com/es/developer/uprof.html"; homepage = "https://www.amd.com/es/developer/uprof.html";
platforms = lib.platforms.linux; platforms = [ "x86_64-linux" ];
license = lib.licenses.unfree; license = lib.licenses.unfree;
maintainers = with lib.maintainers.bsc; [ rarias varcila ]; maintainers = with lib.maintainers.bsc; [ rarias varcila ];
}; };

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@@ -18,8 +18,9 @@ in stdenv.mkDerivation {
set +x set +x
''; '';
hardeningDisable = [ "pic" "format" ]; hardeningDisable = [ "pic" "format" ];
strictDeps = true;
nativeBuildInputs = kernel.moduleBuildDependencies; nativeBuildInputs = kernel.moduleBuildDependencies;
patches = [ ./makefile.patch ./hrtimer.patch ]; patches = [ ./makefile.patch ./hrtimer.patch ./remove-wr-rdmsrq.patch ];
makeFlags = [ makeFlags = [
"KERNEL_VERSION=${kernel.modDirVersion}" "KERNEL_VERSION=${kernel.modDirVersion}"
"KERNEL_DIR=${kernel.dev}/lib/modules/${kernel.modDirVersion}/build" "KERNEL_DIR=${kernel.dev}/lib/modules/${kernel.modDirVersion}/build"

View File

@@ -0,0 +1,20 @@
diff --git a/inc/PwrProfAsm.h b/inc/PwrProfAsm.h
index d77770a..c93a0e9 100644
--- a/inc/PwrProfAsm.h
+++ b/inc/PwrProfAsm.h
@@ -347,6 +347,7 @@
#endif
+/*
#define rdmsrq(msr,val1,val2,val3,val4) ({ \
__asm__ __volatile__( \
"rdmsr\n" \
@@ -362,6 +363,7 @@
:"c"(msr), "a"(val1), "d"(val2), "S"(val3), "D"(val4) \
); \
})
+*/
#define rdmsrpw(msr,val1,val2,val3,val4) ({ \
__asm__ __volatile__( \

View File

@@ -59,6 +59,7 @@ stdenv.mkDerivation rec {
]; ];
hardeningDisable = [ "all" ]; hardeningDisable = [ "all" ];
dontStrip = true; dontStrip = true;
strictDeps = true;
meta = { meta = {
homepage = "https://gitlab.pm.bsc.es/rarias/bench6"; homepage = "https://gitlab.pm.bsc.es/rarias/bench6";

View File

@@ -16,6 +16,8 @@ stdenv.mkDerivation {
}; };
nativeBuildInputs = [ cmake ]; nativeBuildInputs = [ cmake ];
strictDeps = true;
meta = { meta = {
homepage = "https://github.com/rodarima/bigotes"; homepage = "https://github.com/rodarima/bigotes";
description = "Versatile benchmark tool"; description = "Versatile benchmark tool";

View File

@@ -1,53 +0,0 @@
diff --git a/CMakeLists.txt b/CMakeLists.txt
index 3d139ed..15ffc14 100644
--- a/CMakeLists.txt
+++ b/CMakeLists.txt
@@ -176,32 +179,22 @@ if( BUILD_clSPARSE OR BUILD_SAMPLES )
if( BUILD_clSPARSE )
message( STATUS "Setting up clSPARSE external..." )
- if ( BUILD_SAMPLES )
- # If the user elects to build samples, then we must build and install clSPARSE
- # The install location is set as a subdirectory of the SuperBuild
- ExternalProject_Add(
- clSPARSE
- DEPENDS ${clSPARSE.Dependencies}
- SOURCE_DIR ${PROJECT_SOURCE_DIR}/src
- BINARY_DIR clSPARSE-build
- INSTALL_DIR clSPARSE-package
- CMAKE_ARGS ${clSPARSE.Cmake.Args} -DCMAKE_BUILD_TYPE=${CMAKE_BUILD_TYPE}
- -DBUILD_CLVERSION=${BUILD_CLVERSION} -DCMAKE_INSTALL_PREFIX=<INSTALL_DIR>
- -DUSE_SYSTEM_CL2HPP:BOOL=${USE_SYSTEM_CL2HPP}
- )
- else( )
- # If the user does not want to build samples, then build clSPARSE but don't automatically
- # install it
- ExternalProject_Add(
- clSPARSE
- DEPENDS ${clSPARSE.Dependencies}
- SOURCE_DIR ${PROJECT_SOURCE_DIR}/src
- BINARY_DIR clSPARSE-build
- CMAKE_ARGS ${clSPARSE.Cmake.Args} -DCMAKE_BUILD_TYPE=${CMAKE_BUILD_TYPE}
- -DBUILD_CLVERSION=${BUILD_CLVERSION} -DUSE_SYSTEM_CL2HPP:BOOL=${USE_SYSTEM_CL2HPP}
- INSTALL_COMMAND ""
- )
- endif( )
+ ExternalProject_Add(
+ clSPARSE
+ DEPENDS ${clSPARSE.Dependencies}
+ SOURCE_DIR ${PROJECT_SOURCE_DIR}/src
+ BINARY_DIR clSPARSE-build
+ INSTALL_DIR clSPARSE-package
+ CMAKE_ARGS ${clSPARSE.Cmake.Args} -DCMAKE_BUILD_TYPE=${CMAKE_BUILD_TYPE}
+ -DBUILD_CLVERSION=${BUILD_CLVERSION} -DCMAKE_INSTALL_PREFIX=<INSTALL_DIR>
+ -DUSE_SYSTEM_CL2HPP:BOOL=${USE_SYSTEM_CL2HPP}
+ )
+
+ install(
+ DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}/clSPARSE-package/
+ DESTINATION ${CMAKE_INSTALL_PREFIX}
+ USE_SOURCE_PERMISSIONS
+ )
endif( )

View File

@@ -1,70 +0,0 @@
{
lib,
stdenv,
fetchFromGitHub,
fetchpatch,
boost,
gtest,
ocl-icd,
opencl-headers,
opencl-clhpp,
cmake,
}:
stdenv.mkDerivation rec {
pname = "clsparse";
version = "0.10.2.0";
src = fetchFromGitHub {
owner = "clMathLibraries";
repo = "clSPARSE";
rev = "v${version}";
hash = "sha256-jIauCtUyPEIx7pFI3qH0WagV+t/fvro0OsGgONBJm0s=";
};
patches = [
./pass_include_dir.patch
./install_target.patch
(fetchpatch {
name = "remove-gettypecode.patch";
url = "https://patch-diff.githubusercontent.com/raw/clMathLibraries/clSPARSE/pull/210.patch";
hash = "sha256-9Q+tk7RMdWE4MCnbvWlsI0MIgBYKIWR2jIC1bICtIjU=";
})
];
postInstallPhase = ''
mv $installDir/lib64 lib
ln -s lib/ lib64
'';
env.NIX_CFLAGS_COMPILE = "-std=c++17";
nativeBuildInputs = [
cmake
];
buildInputs = [
boost
ocl-icd
opencl-headers
opencl-clhpp
];
cmakeFlags = [
"-DBUILD_Boost=OFF"
"-DBUILD_gMock=OFF"
"-DBUILD_MTX=OFF"
"-DBUILD_SAMPLES=OFF"
"-DUSE_SYSTEM_CL2HPP=ON"
"-DGMOCK_ROOT=${gtest}"
"-DGTEST_INCLUDE_DIR=${gtest.src}/googletest/include"
];
meta = {
description = "A software library containing Sparse functions written in OpenCL";
homepage = "https://github.com/clMathLibraries/clSPARSE";
license = lib.licenses.asl20;
maintainers = with lib.maintainers; [ leixb ];
platforms = lib.platforms.all;
};
}

View File

@@ -1,14 +0,0 @@
diff --git a/CMakeLists.txt b/CMakeLists.txt
index 3d139ed..b7ea2d3 100644
--- a/CMakeLists.txt
+++ b/CMakeLists.txt
@@ -132,6 +132,9 @@ else( )
set( GMOCK_ROOT "$ENV{GMOCK_ROOT}" )
endif( )
list( APPEND clSPARSE.Cmake.Args -DGTEST_ROOT=${GMOCK_ROOT} )
+ if( DEFINED GTEST_INCLUDE_DIR )
+ list( APPEND clSPARSE.Cmake.Args -DGTEST_INCLUDE_DIR=${GTEST_INCLUDE_DIR} )
+ endif( )
endif( )
endif( )

View File

@@ -1,5 +1,6 @@
{ {
stdenv stdenv
, lib
, cudatoolkit , cudatoolkit
, cudaPackages , cudaPackages
, autoAddDriverRunpath , autoAddDriverRunpath
@@ -9,11 +10,14 @@
stdenv.mkDerivation (finalAttrs: { stdenv.mkDerivation (finalAttrs: {
name = "cudainfo"; name = "cudainfo";
src = ./.; src = ./.;
buildInputs = [ strictDeps = true;
nativeBuildInputs = [
cudatoolkit # Required for nvcc cudatoolkit # Required for nvcc
cudaPackages.cuda_cudart.static # Required for -lcudart_static
autoAddDriverRunpath autoAddDriverRunpath
]; ];
buildInputs = [
(lib.getOutput "static" cudaPackages.cuda_cudart) # Required for -lcudart_static
];
installPhase = '' installPhase = ''
mkdir -p $out/bin mkdir -p $out/bin
cp -a cudainfo $out/bin cp -a cudainfo $out/bin
@@ -22,6 +26,7 @@ stdenv.mkDerivation (finalAttrs: {
name = "cudainfo-test"; name = "cudainfo-test";
requiredSystemFeatures = [ "cuda" ]; requiredSystemFeatures = [ "cuda" ];
dontBuild = true; dontBuild = true;
strictDeps = true;
nativeCheckInputs = [ nativeCheckInputs = [
finalAttrs.finalPackage # The cudainfo package from above finalAttrs.finalPackage # The cudainfo package from above
strace # When it fails, it will show the trace strace # When it fails, it will show the trace
@@ -40,4 +45,9 @@ stdenv.mkDerivation (finalAttrs: {
''; '';
installPhase = "touch $out"; installPhase = "touch $out";
}; };
meta = {
platforms = [ "x86_64-linux" ];
maintainers = with lib.maintainers.bsc; [ rarias ];
};
}) })

View File

@@ -20,7 +20,7 @@
#, python3Packages #, python3Packages
, installShellFiles , installShellFiles
, symlinkJoin , symlinkJoin
, enablePapi ? stdenv.hostPlatform == stdenv.buildPlatform # Disabled when cross-compiling , enablePapi ? true
}: }:
let let

View File

@@ -9,7 +9,6 @@
, automake , automake
, libtool , libtool
, mpi , mpi
, rsync
, gfortran , gfortran
}: }:
@@ -34,6 +33,7 @@ stdenv.mkDerivation rec {
}; };
enableParallelBuilding = true; enableParallelBuilding = true;
strictDeps = true;
patches = [ ./rdma-core.patch ./max-mem.patch ]; patches = [ ./rdma-core.patch ./max-mem.patch ];
@@ -44,13 +44,24 @@ stdenv.mkDerivation rec {
configureFlags = [ configureFlags = [
"--with-infiniband=${rdma-core-all}" "--with-infiniband=${rdma-core-all}"
"--with-mpi=${mpiAll}" "--with-mpi=yes" # fixes mpi detection when cross-compiling
"--with-slurm" "--with-slurm"
"CFLAGS=-fPIC" "CFLAGS=-fPIC"
"CXXFLAGS=-fPIC" "CXXFLAGS=-fPIC"
]; ];
buildInputs = [ slurm mpiAll rdma-core-all autoconf automake libtool rsync gfortran ]; nativeBuildInputs = [
autoconf
automake
gfortran
libtool
];
buildInputs = [
slurm
mpiAll
rdma-core-all
];
hardeningDisable = [ "all" ]; hardeningDisable = [ "all" ];
@@ -60,5 +71,6 @@ stdenv.mkDerivation rec {
maintainers = with lib.maintainers.bsc; [ rarias ]; maintainers = with lib.maintainers.bsc; [ rarias ];
platforms = lib.platforms.linux; platforms = lib.platforms.linux;
license = lib.licenses.gpl3Plus; license = lib.licenses.gpl3Plus;
cross = false; # infiniband detection does not work
}; };
} }

View File

@@ -10,7 +10,7 @@
, zlib , zlib
, autoPatchelfHook , autoPatchelfHook
, libfabric , libfabric
, gcc13 , gcc
, wrapCCWith , wrapCCWith
}: }:
@@ -33,8 +33,6 @@ let
maintainers = with lib.maintainers.bsc; [ abonerib ]; maintainers = with lib.maintainers.bsc; [ abonerib ];
}; };
gcc = gcc13;
v = { v = {
hpckit = "2023.1.0"; hpckit = "2023.1.0";
compiler = "2023.1.0"; compiler = "2023.1.0";
@@ -130,6 +128,7 @@ let
phases = [ "installPhase" "fixupPhase" ]; phases = [ "installPhase" "fixupPhase" ];
dontStrip = true; dontStrip = true;
strictDeps = true;
installPhase = '' installPhase = ''
mkdir -p $out/{bin,etc,lib,include} mkdir -p $out/{bin,etc,lib,include}
mkdir -p $out/share/man mkdir -p $out/share/man
@@ -181,6 +180,7 @@ let
]; ];
phases = [ "installPhase" "fixupPhase" ]; phases = [ "installPhase" "fixupPhase" ];
dontStrip = true; dontStrip = true;
strictDeps = true;
autoPatchelfIgnoreMissingDeps = [ "libhwloc.so.5" ]; autoPatchelfIgnoreMissingDeps = [ "libhwloc.so.5" ];
@@ -224,6 +224,7 @@ let
]; ];
phases = [ "installPhase" "fixupPhase" ]; phases = [ "installPhase" "fixupPhase" ];
dontStrip = true; dontStrip = true;
strictDeps = true;
autoPatchelfIgnoreMissingDeps = [ "libsycl.so.6" ]; autoPatchelfIgnoreMissingDeps = [ "libsycl.so.6" ];
@@ -291,6 +292,7 @@ let
phases = [ "installPhase" "fixupPhase" ]; phases = [ "installPhase" "fixupPhase" ];
dontStrip = true; dontStrip = true;
strictDeps = true;
installPhase = '' installPhase = ''
mkdir -p $out/{bin,lib,include} mkdir -p $out/{bin,lib,include}
@@ -379,6 +381,7 @@ let
phases = [ "installPhase" "fixupPhase" ]; phases = [ "installPhase" "fixupPhase" ];
dontStrip = true; dontStrip = true;
strictDeps = true;
installPhase = '' installPhase = ''
mkdir -p $out/{bin,lib} mkdir -p $out/{bin,lib}

View File

@@ -16,19 +16,19 @@
, useGit ? false , useGit ? false
, gitUrl ? "ssh://git@bscpm04.bsc.es/llvm-ompss/llvm-mono.git" , gitUrl ? "ssh://git@bscpm04.bsc.es/llvm-ompss/llvm-mono.git"
, gitBranch ? "master" , gitBranch ? "master"
, gitCommit ? "880e2341c56bad1dc14e8c369fb3356bec19018e" , gitCommit ? "872ba63f86edaefc9787984ef3fae9f2f94e0124" # github-release-2025.11
}: }:
let let
stdenv = llvmPackages_latest.stdenv; stdenv = llvmPackages_latest.stdenv;
release = rec { release = rec {
version = "2025.06"; version = "2025.11";
src = fetchFromGitHub { src = fetchFromGitHub {
owner = "bsc-pm"; owner = "bsc-pm";
repo = "llvm"; repo = "llvm";
rev = "refs/tags/github-release-${version}"; rev = "refs/tags/github-release-${version}";
hash = "sha256-ww9PpRmtz/M9IyLiZ8rAehx2UW4VpQt+svf4XfKBzKo="; hash = "sha256-UgwMTUkM9Z87dDH205swZFBeFhrcbLAxginViG40pBM=";
}; };
}; };
@@ -48,6 +48,7 @@ in stdenv.mkDerivation {
inherit (source) src version; inherit (source) src version;
enableParallelBuilding = true; enableParallelBuilding = true;
strictDeps = true;
passthru = { passthru = {
CC = "clang"; CC = "clang";

View File

@@ -27,10 +27,10 @@ let
# We need to replace the lld linker from bintools with our linker just built, # We need to replace the lld linker from bintools with our linker just built,
# otherwise we run into incompatibility issues when mixing compiler and linker # otherwise we run into incompatibility issues when mixing compiler and linker
# versions. # versions.
bintools-unwrapped = llvmPackages_latest.tools.bintools-unwrapped.override { bintools-unwrapped = llvmPackages_latest.bintools-unwrapped.override {
lld = clangOmpss2Unwrapped; lld = clangOmpss2Unwrapped;
}; };
bintools = llvmPackages_latest.tools.bintools.override { bintools = llvmPackages_latest.bintools.override {
bintools = bintools-unwrapped; bintools = bintools-unwrapped;
}; };
targetConfig = stdenv.targetPlatform.config; targetConfig = stdenv.targetPlatform.config;

View File

@@ -39,7 +39,9 @@ stdenv.mkDerivation rec {
perl perl
pkg-config pkg-config
python3 python3
] ++ lib.optionals enableNosv [ ];
buildInputs = lib.optionals enableNosv [
nosv nosv
] ++ lib.optionals enableOvni [ ] ++ lib.optionals enableOvni [
ovni ovni
@@ -54,6 +56,7 @@ stdenv.mkDerivation rec {
dontStrip = enableDebug; dontStrip = enableDebug;
separateDebugInfo = true; separateDebugInfo = true;
strictDeps = true;
cmakeFlags = [ cmakeFlags = [
"-DLIBOMP_OMPD_SUPPORT=OFF" "-DLIBOMP_OMPD_SUPPORT=OFF"
@@ -71,6 +74,28 @@ stdenv.mkDerivation rec {
rm -f $out/libllvmrt/libomp.* rm -f $out/libllvmrt/libomp.*
''; '';
doInstallCheck = true;
# There are not cmake flags to force nOS-V, it enables it when found through
# pkg-config. If enableNosv is set, but we fail to find it at build time,
# the build will succeed but won't use nOS-V (libompv won't be created).
# This is a sanity check to ensure that after install we have the proper
# files.
installCheckPhase =
if enableNosv then
''
test -f $out/lib/libompv.so
test -f $out/libllvmrt/libompv.so
test ! -f $out/lib/libomp.so
test ! -f $out/libllvmrt/libomp.so
''
else
''
test -f $out/lib/libomp.so
test -f $out/libllvmrt/libomp.so
test ! -f $out/lib/libompv.so
test ! -f $out/libllvmrt/libompv.so
'';
passthru = { passthru = {
inherit nosv; inherit nosv;
}; };

View File

@@ -27,6 +27,7 @@ stdenv.mkDerivation rec {
hardeningDisable = [ "all" ]; hardeningDisable = [ "all" ];
enableParallelBuilding = false; enableParallelBuilding = false;
strictDeps = true;
preBuild = '' preBuild = ''
makeFlagsArray+=( makeFlagsArray+=(

View File

@@ -65,6 +65,7 @@ stdenv.mkDerivation rec {
]; ];
meta = { meta = {
broken = true;
homepage = "https://github.com/bsc-pm/mcxx"; homepage = "https://github.com/bsc-pm/mcxx";
description = "C/C++/Fortran source-to-source compilation infrastructure aimed at fast prototyping"; description = "C/C++/Fortran source-to-source compilation infrastructure aimed at fast prototyping";
maintainers = with lib.maintainers.bsc; [ rpenacob ]; maintainers = with lib.maintainers.bsc; [ rpenacob ];

View File

@@ -1,12 +1,15 @@
{ python3Packages, lib }: { python3Packages, lib }:
python3Packages.buildPythonApplication rec { python3Packages.buildPythonApplication {
pname = "meteocat-exporter"; pname = "meteocat-exporter";
version = "1.0"; version = "1.0";
pyproject = true;
src = ./.; src = ./.;
doCheck = false; doCheck = false;
strictDeps = true;
build-system = with python3Packages; [ build-system = with python3Packages; [
setuptools setuptools

View File

@@ -6,6 +6,13 @@
, pmix , pmix
, gfortran , gfortran
, symlinkJoin , symlinkJoin
# Disabled when cross-compiling
# To fix cross compilation, we should fill the values in:
# https://github.com/pmodels/mpich/blob/main/maint/fcrosscompile/cross_values.txt.in
# For each arch
, enableFortran ? stdenv.hostPlatform == stdenv.buildPlatform
, perl
, targetPackages
}: }:
let let
@@ -15,10 +22,13 @@ let
paths = [ pmix.dev pmix.out ]; paths = [ pmix.dev pmix.out ];
}; };
in mpich.overrideAttrs (old: { in mpich.overrideAttrs (old: {
buildInput = old.buildInputs ++ [ buildInputs = old.buildInputs ++ [
libfabric libfabric
pmixAll pmixAll
]; ];
nativeBuildInputs = old.nativeBuildInputs ++ [
perl
];
configureFlags = [ configureFlags = [
"--enable-shared" "--enable-shared"
"--enable-sharedlib" "--enable-sharedlib"
@@ -31,10 +41,22 @@ in mpich.overrideAttrs (old: {
] ++ lib.optionals (lib.versionAtLeast gfortran.version "10") [ ] ++ lib.optionals (lib.versionAtLeast gfortran.version "10") [
"FFLAGS=-fallow-argument-mismatch" # https://github.com/pmodels/mpich/issues/4300 "FFLAGS=-fallow-argument-mismatch" # https://github.com/pmodels/mpich/issues/4300
"FCFLAGS=-fallow-argument-mismatch" "FCFLAGS=-fallow-argument-mismatch"
] ++ lib.optionals (!enableFortran) [
"--disable-fortran"
]; ];
preFixup = ''
sed -i 's:^CC=.*:CC=${targetPackages.stdenv.cc}/bin/${targetPackages.stdenv.cc.targetPrefix}cc:' $out/bin/mpicc
sed -i 's:^CXX=.*:CXX=${targetPackages.stdenv.cc}/bin/${targetPackages.stdenv.cc.targetPrefix}c++:' $out/bin/mpicxx
'' + lib.optionalString enableFortran ''
sed -i 's:^FC=.*:FC=${targetPackages.gfortran or gfortran}/bin/${targetPackages.gfortran.targetPrefix or gfortran.targetPrefix}gfortran:' $out/bin/mpifort
'';
hardeningDisable = [ "all" ]; hardeningDisable = [ "all" ];
strictDeps = true;
meta = old.meta // { meta = old.meta // {
maintainers = old.meta.maintainers ++ (with lib.maintainers.bsc; [ rarias ]); maintainers = old.meta.maintainers ++ (with lib.maintainers.bsc; [ rarias ]);
cross = true;
}; };
}) })

View File

@@ -0,0 +1,67 @@
diff --git a/m4/papi.m4 b/m4/papi.m4
--- a/m4/papi.m4
+++ b/m4/papi.m4
@@ -24,12 +24,13 @@ AC_DEFUN([AC_CHECK_PAPI],
else
PKG_CHECK_MODULES(
[papi],
- [papi],
+ [papi >= 5.6.0],
[
AC_MSG_CHECKING([the PAPI installation prefix])
AC_MSG_RESULT([retrieved from pkg-config])
papi_CPPFLAGS="${papi_CFLAGS}"
ac_use_papi=yes
+ ac_papi_version_correct=yes
], [
AC_MSG_CHECKING([the PAPI installation prefix])
AC_MSG_RESULT([not available])
@@ -67,27 +68,29 @@ AC_DEFUN([AC_CHECK_PAPI],
fi
if test x"${ac_use_papi}" = x"yes" ; then
- if test x"${ac_cv_use_papi_prefix}" != x"" ; then
- papiBinary=${ac_cv_use_papi_prefix}/bin/papi_version
- else
- papiBinary=papi_version
- fi
- papiVersion=`$papiBinary | sed 's/[[^0-9.]]*\([[0-9.]]*\).*/\1/'`
+ if test x"${ac_papi_version_correct}" != x"yes" ; then
+ if test x"${ac_cv_use_papi_prefix}" != x"" ; then
+ papiBinary=${ac_cv_use_papi_prefix}/bin/papi_version
+ else
+ papiBinary=papi_version
+ fi
+ papiVersion=`$papiBinary | sed 's/[[^0-9.]]*\([[0-9.]]*\).*/\1/'`
- AX_COMPARE_VERSION(
- [[${papiVersion}]],
- [[ge]],
- [[5.6.0]],
- [[ac_papi_version_correct=yes]],
- [[ac_papi_version_correct=no]]
- )
+ AX_COMPARE_VERSION(
+ [[${papiVersion}]],
+ [[ge]],
+ [[5.6.0]],
+ [[ac_papi_version_correct=yes]],
+ [[ac_papi_version_correct=no]]
+ )
- if test x"${ac_papi_version_correct}" != x"yes" ; then
- AC_MSG_ERROR([PAPI version must be >= 5.6.0.])
- ac_use_papi=no
- else
- AC_MSG_CHECKING([if the PAPI version >= 5.6.0.])
- AC_MSG_RESULT([${ac_papi_version_correct}])
+ if test x"${ac_papi_version_correct}" != x"yes" ; then
+ AC_MSG_ERROR([PAPI version must be >= 5.6.0.])
+ ac_use_papi=no
+ else
+ AC_MSG_CHECKING([if the PAPI version >= 5.6.0.])
+ AC_MSG_RESULT([${ac_papi_version_correct}])
+ fi
fi
fi

View File

@@ -16,7 +16,7 @@
, jemallocNanos6 ? null , jemallocNanos6 ? null
, cachelineBytes ? 64 , cachelineBytes ? 64
, enableGlibcxxDebug ? false , enableGlibcxxDebug ? false
, enablePapi ? stdenv.hostPlatform == stdenv.buildPlatform # Disabled when cross-compiling , enablePapi ? true
, useGit ? false , useGit ? false
, gitUrl ? "ssh://git@bscpm04.bsc.es/nanos6/nanos6" , gitUrl ? "ssh://git@bscpm04.bsc.es/nanos6/nanos6"
, gitBranch ? "master" , gitBranch ? "master"
@@ -95,16 +95,15 @@ in
dontStrip = enableDebug; dontStrip = enableDebug;
separateDebugInfo = true; separateDebugInfo = true;
strictDeps = true;
patches = [ ./check-papi-version-with-pkgconfig.patch ];
nativeBuildInputs = [ nativeBuildInputs = [
autoconf autoconf
automake automake
libtool libtool
pkg-config pkg-config
];
# TODO: papi_version is needed for configure:
# ./configure: line 27378: papi_version: command not found
# This probably breaks cross-compilation
] ++ lib.optionals enablePapi [ papi ];
buildInputs = [ buildInputs = [
boost boost

23
pkgs/nixgen/default.nix Normal file
View File

@@ -0,0 +1,23 @@
{
stdenv
, lib
}:
stdenv.mkDerivation {
pname = "nixgen";
version = "0.0.1";
src = ./nixgen;
dontUnpack = true;
strictDeps = true;
phases = [ "installPhase" ];
installPhase = ''
mkdir -p $out/bin
cp -a $src $out/bin/nixgen
'';
meta = {
description = "Quickly generate flake.nix from command line";
maintainers = with lib.maintainers.bsc; [ rarias ];
platforms = lib.platforms.linux;
license = lib.licenses.gpl3Plus;
};
}

97
pkgs/nixgen/nixgen Executable file
View File

@@ -0,0 +1,97 @@
#!/bin/sh
#
# Copyright (c) 2025, Barcelona Supercomputing Center (BSC)
# SPDX-License-Identifier: GPL-3.0+
# Author: Rodrigo Arias Mallo <rodrigo.arias@bsc.es>
function usage() {
echo "USAGE: nixgen [-f] [package [...]] [-b package [...]]" >&2
echo " Generates a flake.nix file with the given packages." >&2
echo " After flake.nix is created, use 'nix develop' to enter the shell." >&2
echo "OPTIONS" >&2
echo " -f Overwrite existing flake.nix (default: no)." >&2
echo " packages... Add these packages to the shell." >&2
echo " -b packages... Add the dependencies needed to build these packages." >&2
echo "EXAMPLE" >&2
echo " $ nixgen ovni bigotes -b nosv tampi" >&2
echo " Adds the packages ovni and bigotes as well as all required dependencies" >&2
echo " to build nosv and tampi." >&2
echo "AUTHOR" >&2
echo " Rodrigo Arias Mallo <rodrigo.arias@bsc.es>" >&2
exit 1
}
mode=package
packages=
inputsFrom=
force=
if [[ $# -eq 0 ]]; then
usage
fi
while [[ $# -gt 0 ]]; do
case $1 in -b)
mode=build
shift
;;
-f)
force=1
shift
;;
-h)
usage
;;
-*|--*)
echo "error: unknown option $1" >&2
exit 1
;;
*)
if [ "$mode" == "package" ]; then
packages+="${packages:+ }$1"
else
inputsFrom+="${inputsFrom:+ }$1"
fi
shift
;;
esac
done
if [ ! "$force" -a -e flake.nix ]; then
echo "error: flake.nix exists, force overwrite with -f" >&2
exit 1
fi
cat > flake.nix <<EOF
{
inputs.jungle.url = "git+https://jungle.bsc.es/git/rarias/jungle";
outputs = { self, jungle }:
let
nixpkgs = jungle.inputs.nixpkgs;
customOverlay = (final: prev: {
# Example overlay, for now empty
});
pkgs = import nixpkgs {
system = "x86_64-linux";
overlays = [
# Apply jungle overlay to get our BSC custom packages
jungle.outputs.bscOverlay
# And on top apply our local changes to customize for cluster
customOverlay
];
};
in {
devShells.x86_64-linux.default = pkgs.mkShell {
pname = "devshell";
# Include these packages in the shell
packages = with pkgs; [
$packages
];
# The dependencies needed to build these packages will be also included
inputsFrom = with pkgs; [
$inputsFrom
];
};
};
}
EOF

View File

@@ -16,6 +16,7 @@ stdenv.mkDerivation rec {
makeFlags = [ "DESTDIR=$(out)" ]; makeFlags = [ "DESTDIR=$(out)" ];
preBuild = "env"; preBuild = "env";
dontPatchShebangs = true; dontPatchShebangs = true;
strictDeps = true;
meta = { meta = {
homepage = "https://gitlab.pm.bsc.es/rarias/nixtools"; homepage = "https://gitlab.pm.bsc.es/rarias/nixtools";

View File

@@ -14,19 +14,19 @@
, useGit ? false , useGit ? false
, gitUrl ? "ssh://git@gitlab-internal.bsc.es/nos-v/nodes.git" , gitUrl ? "ssh://git@gitlab-internal.bsc.es/nos-v/nodes.git"
, gitBranch ? "master" , gitBranch ? "master"
, gitCommit ? "6002ec9ae6eb876d962cc34366952a3b26599ba6" , gitCommit ? "511489e71504a44381e0930562e7ac80ac69a848" # version-1.4
}: }:
with lib; with lib;
let let
release = rec { release = rec {
version = "1.3"; version = "1.4";
src = fetchFromGitHub { src = fetchFromGitHub {
owner = "bsc-pm"; owner = "bsc-pm";
repo = "nodes"; repo = "nodes";
rev = "version-${version}"; rev = "version-${version}";
hash = "sha256-cFb9pxcjtkMmH0CsGgUO9LTdXDNh7MCqicgGWawLrsU="; hash = "sha256-+lR/R0l3fGZO3XG7whMorFW2y2YZ0ZFnLeOHyQYrAsQ=";
}; };
}; };
@@ -48,6 +48,7 @@ in
enableParallelBuilding = true; enableParallelBuilding = true;
dontStrip = true; dontStrip = true;
separateDebugInfo = true; separateDebugInfo = true;
strictDeps = true;
configureFlags = [ configureFlags = [
"--with-nosv=${nosv}" "--with-nosv=${nosv}"

View File

@@ -0,0 +1,68 @@
diff --git a/m4/papi.m4 b/m4/papi.m4
index de905848..fa3db9a1 100644
--- a/m4/papi.m4
+++ b/m4/papi.m4
@@ -24,12 +24,13 @@ AC_DEFUN([AC_CHECK_PAPI],
else
PKG_CHECK_MODULES(
[papi],
- [papi],
+ [papi >= 5.6.0],
[
AC_MSG_CHECKING([the PAPI installation prefix])
AC_MSG_RESULT([retrieved from pkg-config])
papi_CFLAGS="${papi_CFLAGS}"
ac_use_papi=yes
+ ac_papi_version_correct=yes
], [
AC_MSG_CHECKING([the PAPI installation prefix])
AC_MSG_RESULT([not available])
@@ -67,27 +68,29 @@ AC_DEFUN([AC_CHECK_PAPI],
fi
if test x"${ac_use_papi}" = x"yes" ; then
- if test x"${ac_cv_use_papi_prefix}" != x"" ; then
- papiBinary=${ac_cv_use_papi_prefix}/bin/papi_version
- else
- papiBinary=papi_version
- fi
- papiVersion=`$papiBinary | sed 's/[[^0-9.]]*\([[0-9.]]*\).*/\1/'`
+ if test x"${ac_papi_version_correct}" != x"yes" ; then
+ if test x"${ac_cv_use_papi_prefix}" != x"" ; then
+ papiBinary=${ac_cv_use_papi_prefix}/bin/papi_version
+ else
+ papiBinary=papi_version
+ fi
+ papiVersion=`$papiBinary | sed 's/[[^0-9.]]*\([[0-9.]]*\).*/\1/'`
- AX_COMPARE_VERSION(
- [[${papiVersion}]],
- [[ge]],
- [[5.6.0]],
- [[ac_papi_version_correct=yes]],
- [[ac_papi_version_correct=no]]
- )
+ AX_COMPARE_VERSION(
+ [[${papiVersion}]],
+ [[ge]],
+ [[5.6.0]],
+ [[ac_papi_version_correct=yes]],
+ [[ac_papi_version_correct=no]]
+ )
- if test x"${ac_papi_version_correct}" != x"yes" ; then
- AC_MSG_ERROR([PAPI version must be >= 5.6.0.])
- ac_use_papi=no
- else
- AC_MSG_CHECKING([if the PAPI version >= 5.6.0.])
- AC_MSG_RESULT([${ac_papi_version_correct}])
+ if test x"${ac_papi_version_correct}" != x"yes" ; then
+ AC_MSG_ERROR([PAPI version must be >= 5.6.0.])
+ ac_use_papi=no
+ else
+ AC_MSG_CHECKING([if the PAPI version >= 5.6.0.])
+ AC_MSG_RESULT([${ac_papi_version_correct}])
+ fi
fi
fi

View File

@@ -7,25 +7,25 @@
, numactl , numactl
, hwloc , hwloc
, papi , papi
, enablePapi ? stdenv.hostPlatform == stdenv.buildPlatform # Disabled when cross-compiling , enablePapi ? true
, cacheline ? 64 # bits , cacheline ? 64 # bits
, ovni ? null , ovni ? null
, useGit ? false , useGit ? false
, gitUrl ? "git@gitlab-internal.bsc.es:nos-v/nos-v.git" , gitUrl ? "git@gitlab-internal.bsc.es:nos-v/nos-v.git"
, gitBranch ? "master" , gitBranch ? "master"
, gitCommit ? "9f47063873c3aa9d6a47482a82c5000a8c813dd8" , gitCommit ? "1108e4786b58e0feb9a16fa093010b763eb2f8e8" # version 4.0.0
}: }:
with lib; with lib;
let let
release = rec { release = rec {
version = "3.2.0"; version = "4.0.0";
src = fetchFromGitHub { src = fetchFromGitHub {
owner = "bsc-pm"; owner = "bsc-pm";
repo = "nos-v"; repo = "nos-v";
rev = "${version}"; rev = "${version}";
hash = "sha256-yaz92426EM8trdkBJlISmAoG9KJCDTvoAW/HKrasvOw="; hash = "sha256-llaq73bd/YxLVKNlMebnUHKa4z3sdcsuDUoVwUxNuw8=";
}; };
}; };
@@ -40,12 +40,14 @@ let
source = if (useGit) then git else release; source = if (useGit) then git else release;
in in
stdenv.mkDerivation rec { stdenv.mkDerivation {
pname = "nosv"; pname = "nosv";
inherit (source) src version; inherit (source) src version;
hardeningDisable = [ "all" ]; hardeningDisable = [ "all" ];
dontStrip = true; dontStrip = true;
separateDebugInfo = true; separateDebugInfo = true;
strictDeps = true;
patches = [ ./check-papi-version-with-pkgconfig.patch ];
configureFlags = [ configureFlags = [
"--with-ovni=${ovni}" "--with-ovni=${ovni}"
"CACHELINE_WIDTH=${toString cacheline}" "CACHELINE_WIDTH=${toString cacheline}"

View File

@@ -24,6 +24,7 @@ stdenv.mkDerivation rec {
doCheck = true; doCheck = true;
enableParallelBuilding = true; enableParallelBuilding = true;
strictDeps = true;
nativeBuildInputs = [ mpiAll ]; nativeBuildInputs = [ mpiAll ];
buildInputs = [ mpiAll ]; buildInputs = [ mpiAll ];
hardeningDisable = [ "all" ]; hardeningDisable = [ "all" ];
@@ -32,6 +33,11 @@ stdenv.mkDerivation rec {
"CXX=mpicxx" "CXX=mpicxx"
]; ];
env = {
MPICH_CC="${stdenv.cc}/bin/${stdenv.cc.targetPrefix}cc";
MPICH_CXX="${stdenv.cc}/bin/${stdenv.cc.targetPrefix}c++";
};
postInstall = '' postInstall = ''
mkdir -p $out/bin mkdir -p $out/bin
for f in $(find $out -executable -type f); do for f in $(find $out -executable -type f); do
@@ -44,5 +50,6 @@ stdenv.mkDerivation rec {
homepage = "http://mvapich.cse.ohio-state.edu/benchmarks/"; homepage = "http://mvapich.cse.ohio-state.edu/benchmarks/";
maintainers = [ ]; maintainers = [ ];
platforms = lib.platforms.all; platforms = lib.platforms.all;
cross = true;
}; };
} }

View File

@@ -7,7 +7,7 @@
, useGit ? false , useGit ? false
, gitBranch ? "master" , gitBranch ? "master"
, gitUrl ? "ssh://git@bscpm04.bsc.es/rarias/ovni.git" , gitUrl ? "ssh://git@bscpm04.bsc.es/rarias/ovni.git"
, gitCommit ? "e4f62382076f0cf0b1d08175cf57cc0bc51abc61" , gitCommit ? "06432668f346c8bdc1006fabc23e94ccb81b0d8b" # version 1.13.0
, enableDebug ? false , enableDebug ? false
# Only enable MPI if the build is native (fails on cross-compilation) # Only enable MPI if the build is native (fails on cross-compilation)
, useMpi ? (stdenv.buildPlatform.canExecute stdenv.hostPlatform) , useMpi ? (stdenv.buildPlatform.canExecute stdenv.hostPlatform)
@@ -15,13 +15,13 @@
let let
release = rec { release = rec {
version = "1.12.0"; version = "1.13.0";
src = fetchFromGitHub { src = fetchFromGitHub {
owner = "bsc-pm"; owner = "bsc-pm";
repo = "ovni"; repo = "ovni";
rev = "${version}"; rev = "${version}";
hash = "sha256-H04JvsVKrdqr3ON7JhU0g17jjlg/jzQ7eTfx9vUNd3E="; hash = "sha256-0l2ryIyWNiZqeYdVlnj/WnQGS3xFCY4ICG8JedX424w=";
} // { shortRev = "a73afcf"; }; } // { shortRev = "0643266"; };
}; };
git = rec { git = rec {
@@ -40,6 +40,7 @@ in
inherit (source) src version; inherit (source) src version;
dontStrip = true; dontStrip = true;
separateDebugInfo = true; separateDebugInfo = true;
strictDeps = true;
postPatch = '' postPatch = ''
patchShebangs --build test/ patchShebangs --build test/
''; '';

22
pkgs/papi/default.nix Normal file
View File

@@ -0,0 +1,22 @@
{
stdenv,
papi,
}:
if stdenv.hostPlatform == stdenv.buildPlatform then
papi
else
papi.overrideAttrs (old: {
configureFlags = (old.configureFlags or [ ]) ++ [
"--enable-perf_event_uncore=no"
"--with-sysdetect=no"
"--with-ffsll"
"--with-tls=__thread"
"--with-virtualtimer=clock_thread_cputime_id"
"--with-walltimer=clock_realtime"
"--with-perf-events"
"--with-CPU=${stdenv.hostPlatform.uname.processor}"
"--with-arch=${stdenv.hostPlatform.uname.processor}"
];
patches = (old.patches or [ ]) ++ [ ./fix-ar-cross.patch ];
})

View File

@@ -0,0 +1,19 @@
diff --git a/sde_lib/Makefile b/sde_lib/Makefile
index 8518f92..90a9953 100644
--- a/sde_lib/Makefile
+++ b/sde_lib/Makefile
@@ -1,4 +1,5 @@
CC ?= gcc
+AR ?= ar
SDE_INC = -I. -I..
SDE_LD = -ldl -pthread
CFLAGS += -Wextra -Wall -O2
@@ -18,7 +19,7 @@ dynamic: $(DOBJS)
rm -f *_d.o
static: $(SOBJS)
- ar rs libsde.a $(SOBJS)
+ $(AR) rs libsde.a $(SOBJS)
rm -f *_s.o
clean:

View File

@@ -12,7 +12,7 @@
, paraverKernel , paraverKernel
, openssl , openssl
, glibcLocales , glibcLocales
, wrapGAppsHook , wrapGAppsHook3
}: }:
let let
@@ -47,6 +47,7 @@ stdenv.mkDerivation rec {
dontStrip = true; dontStrip = true;
enableParallelBuilding = true; enableParallelBuilding = true;
strictDeps = true;
preConfigure = '' preConfigure = ''
export CFLAGS="-O3" export CFLAGS="-O3"
@@ -64,7 +65,7 @@ stdenv.mkDerivation rec {
autoconf autoconf
automake automake
autoreconfHook autoreconfHook
wrapGAppsHook wrapGAppsHook3
]; ];
buildInputs = [ buildInputs = [

View File

@@ -34,6 +34,7 @@ stdenv.mkDerivation rec {
enableParallelBuilding = true; enableParallelBuilding = true;
dontStrip = true; dontStrip = true;
strictDeps = true;
preConfigure = '' preConfigure = ''
export CFLAGS="-O3 -DPARALLEL_ENABLED" export CFLAGS="-O3 -DPARALLEL_ENABLED"

View File

@@ -13,6 +13,7 @@ buildGoModule rec {
vendorHash = "sha256-A1dd9T9SIEHDCiVT2UwV6T02BSLh9ej6LC/2l54hgwI="; vendorHash = "sha256-A1dd9T9SIEHDCiVT2UwV6T02BSLh9ej6LC/2l54hgwI=";
doCheck = false; doCheck = false;
strictDeps = true;
meta = with lib; { meta = with lib; {
description = "Prometheus SLURM Exporter"; description = "Prometheus SLURM Exporter";

View File

@@ -18,6 +18,7 @@ stdenv.mkDerivation rec {
}; };
hardeningDisable = [ "all" ]; hardeningDisable = [ "all" ];
dontStrip = true; dontStrip = true;
strictDeps = true;
configureFlags = [ "--with-ovni=${ovni}" ]; configureFlags = [ "--with-ovni=${ovni}" ];
nativeBuildInputs = [ nativeBuildInputs = [
@@ -35,5 +36,6 @@ stdenv.mkDerivation rec {
maintainers = with lib.maintainers.bsc; [ rarias ]; maintainers = with lib.maintainers.bsc; [ rarias ];
platforms = lib.platforms.linux; platforms = lib.platforms.linux;
license = lib.licenses.mit; license = lib.licenses.mit;
cross = true;
}; };
} }

View File

@@ -5,27 +5,19 @@
, automake , automake
, autoconf , autoconf
, libtool , libtool
, mpi
, autoreconfHook , autoreconfHook
, gpi-2 , gpi-2
, boost , boost
, numactl , numactl
, rdma-core , rdma-core
, gfortran , gfortran
, symlinkJoin
}: }:
let
mpiAll = symlinkJoin {
name = "mpi-all";
paths = [ mpi.all ];
};
in
stdenv.mkDerivation rec { stdenv.mkDerivation rec {
pname = "tagaspi"; pname = "tagaspi";
enableParallelBuilding = true; enableParallelBuilding = true;
separateDebugInfo = true; separateDebugInfo = true;
strictDeps = true;
version = "2.0"; version = "2.0";
src = fetchFromGitHub { src = fetchFromGitHub {
@@ -35,16 +27,18 @@ stdenv.mkDerivation rec {
hash = "sha256-RGG/Re2uM293HduZfGzKUWioDtwnSYYdfeG9pVrX9EM="; hash = "sha256-RGG/Re2uM293HduZfGzKUWioDtwnSYYdfeG9pVrX9EM=";
}; };
buildInputs = [ nativeBuildInputs = [
autoreconfHook autoreconfHook
automake automake
autoconf autoconf
libtool libtool
gfortran
];
buildInputs = [
boost boost
numactl numactl
rdma-core rdma-core
gfortran
mpiAll
]; ];
dontDisableStatic = true; dontDisableStatic = true;
@@ -63,5 +57,6 @@ stdenv.mkDerivation rec {
maintainers = with lib.maintainers.bsc; [ rarias ]; maintainers = with lib.maintainers.bsc; [ rarias ];
platforms = lib.platforms.linux; platforms = lib.platforms.linux;
license = lib.licenses.gpl3Plus; license = lib.licenses.gpl3Plus;
cross = false; # gpi-2 cannot cross
}; };
} }

View File

@@ -45,6 +45,7 @@ in stdenv.mkDerivation {
inherit (source) src version; inherit (source) src version;
enableParallelBuilding = true; enableParallelBuilding = true;
separateDebugInfo = true; separateDebugInfo = true;
strictDeps = true;
nativeBuildInputs = [ nativeBuildInputs = [
autoconf autoconf
@@ -68,5 +69,6 @@ in stdenv.mkDerivation {
maintainers = with lib.maintainers.bsc; [ rarias ]; maintainers = with lib.maintainers.bsc; [ rarias ];
platforms = lib.platforms.linux; platforms = lib.platforms.linux;
license = lib.licenses.gpl3Plus; license = lib.licenses.gpl3Plus;
cross = true;
}; };
} }

View File

@@ -1,12 +1,15 @@
{ python3Packages, lib }: { python3Packages, lib }:
python3Packages.buildPythonApplication rec { python3Packages.buildPythonApplication {
pname = "upc-qaire-exporter"; pname = "upc-qaire-exporter";
version = "1.0"; version = "1.0";
pyproject = true;
src = ./.; src = ./.;
doCheck = false; doCheck = false;
strictDeps = true;
build-system = with python3Packages; [ build-system = with python3Packages; [
setuptools setuptools

View File

@@ -23,9 +23,6 @@ in stdenv.mkDerivation {
dontUnpack = true; dontUnpack = true;
dontConfigure = true; dontConfigure = true;
# nOS-V requires access to /sys/devices to request NUMA information
requiredSystemFeatures = [ "sys-devices" ];
buildInputs = [ openmp ]; buildInputs = [ openmp ];
buildPhase = '' buildPhase = ''