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30 Commits

Author SHA1 Message Date
16a8f84727
Refactor intel wrapper logic into single function 2025-12-10 17:36:06 +01:00
92d12c5f69
Properly find include path in patch intel wrapper 2025-12-10 17:26:19 +01:00
01d7133a5d
Use nixSupport instead of extraBuildCommands 2025-12-10 17:09:04 +01:00
8f0f327683
Use packages.json for intel packages instead of awk script 2025-12-10 17:09:04 +01:00
97ffc95f8d
Add passthru in ompss2 wrapper for icpx compat 2025-12-10 17:09:04 +01:00
3b4202f3f5
Remove wrapper flags when clang called from intel 2025-12-10 17:09:04 +01:00
cdc4e7f8fd
Add oneMath 2025-12-10 17:09:03 +01:00
9436e3c604
Fix parsing of new apt package list for oneapi 2023
New apt list does not have Package: as the first entry for all packages
2025-12-10 17:09:03 +01:00
941a13357c
Add TASYCL 2.1.0 2025-12-10 17:09:03 +01:00
d87c4ee985
Add test for icpx with ompss-2 as host compiler 2025-12-10 17:09:03 +01:00
f94e0b05c1
Add SYCL test compilation 2025-12-10 17:09:03 +01:00
b45eed9aef
Add intelPackages_202{4,5} and make 2025 the default 2025-12-10 17:09:03 +01:00
ee9af71da0
Remove conflicting definitions in amd-uprof-driver
See: https://lkml.org/lkml/2025/4/9/1709
2025-12-10 14:34:53 +01:00
1d3bda33a0
Mark mcxx as broken and remove from package list 2025-12-03 10:15:17 +01:00
87bf095dae
Fix moved package linuxPackages.perf is now perf 2025-12-03 10:15:17 +01:00
2264e15102
Fix replaced nixseparatedebuginfod
nixseparatedebuginfod has been replaced by nixseparatedebuginfod2
2025-12-03 10:15:17 +01:00
209f8a582e
Use standard gcc for intel packages
This reverts 26f52aa27d53ef893104c5757cf23a3747b5f635
2025-12-03 10:15:16 +01:00
1457d85f4c
Fix renamed option watchdog.runtimeTime
The option 'systemd.watchdog.runtimeTime' has been renamed to
'systemd.settings.Manager.RuntimeWatchdogSec'.
2025-12-02 17:53:14 +01:00
ad812ea32d
Replace wrapGAppsHook with wrapGAppsHook3 2025-12-02 17:53:13 +01:00
5bc928c407
Fix changed cudaPackages.cuda_cudart output
See: https://github.com/NixOS/nixpkgs/pull/437723
2025-12-02 17:53:13 +01:00
eb9358abab
Set pyproject=true in buildPythonApplication
The buildPythonPackage and buildPythonApplication functions now
  require an explicit format attribute. Previously the default format
  used setuptools and called setup.py from the source tree, which is
  deprecated. The modern alternative is to configure pyproject = true
  with build-system = [ setuptools ].
2025-12-02 17:53:13 +01:00
d2025d35d9
Fix renamed llvm bintools
Moved from llvmPackages_latest.tools.bintools to
llvmPackages_latest.bintools
2025-12-02 17:53:13 +01:00
6e089344da
Upgrade nixpkgs to 25.11 2025-12-02 17:53:13 +01:00
a173af654f
Fix osu cross-compilation
Reviewed-by: Rodrigo Arias Mallo <rodrigo.arias@bsc.es>
2025-10-31 16:23:46 +01:00
2fff7e4a7b
Set mpich default compilers from targetPackages
Reviewed-by: Rodrigo Arias Mallo <rodrigo.arias@bsc.es>
2025-10-31 16:23:46 +01:00
a761b73336
Enable meta.cross for mpich related packages
Reviewed-by: Rodrigo Arias Mallo <rodrigo.arias@bsc.es>
2025-10-31 16:23:46 +01:00
86eb796771
Disable meta.cross for gpi-2 and tagaspi
Reviewed-by: Rodrigo Arias Mallo <rodrigo.arias@bsc.es>
2025-10-31 16:23:46 +01:00
08633435cf
Fix nativeBuildInputs for tagaspi
Reviewed-by: Rodrigo Arias Mallo <rodrigo.arias@bsc.es>
2025-10-31 16:23:46 +01:00
39d64456a4
Fix nativeBuildInputs for gpi-2
Reviewed-by: Rodrigo Arias Mallo <rodrigo.arias@bsc.es>
2025-10-31 16:23:46 +01:00
410040a4a0
Fix mpich cross compilation (disable fortran)
Reviewed-by: Rodrigo Arias Mallo <rodrigo.arias@bsc.es>
2025-10-31 16:23:46 +01:00
33 changed files with 1052 additions and 42937 deletions

8
flake.lock generated
View File

@ -2,16 +2,16 @@
"nodes": {
"nixpkgs": {
"locked": {
"lastModified": 1752436162,
"narHash": "sha256-Kt1UIPi7kZqkSc5HVj6UY5YLHHEzPBkgpNUByuyxtlw=",
"lastModified": 1764522689,
"narHash": "sha256-SqUuBFjhl/kpDiVaKLQBoD8TLD+/cTUzzgVFoaHrkqY=",
"owner": "NixOS",
"repo": "nixpkgs",
"rev": "dfcd5b901dbab46c9c6e80b265648481aafb01f8",
"rev": "8bb5646e0bed5dbd3ab08c7a7cc15b75ab4e1d0f",
"type": "github"
},
"original": {
"owner": "NixOS",
"ref": "nixos-25.05",
"ref": "nixos-25.11",
"repo": "nixpkgs",
"type": "github"
}

View File

@ -1,6 +1,6 @@
{
inputs = {
nixpkgs.url = "github:NixOS/nixpkgs/nixos-25.05";
nixpkgs.url = "github:NixOS/nixpkgs/nixos-25.11";
};
outputs = { self, nixpkgs, ... }:

View File

@ -1,10 +1,10 @@
{ pkgs, config, ... }:
{ pkgs, ... }:
{
environment.systemPackages = with pkgs; [
vim wget git htop tmux pciutils tcpdump ripgrep nix-index nixos-option
nix-diff ipmitool freeipmi ethtool lm_sensors cmake gnumake file tree
ncdu config.boot.kernelPackages.perf ldns pv
ncdu perf ldns pv
# From jungle overlay
osumb nixgen
];

View File

@ -5,5 +5,5 @@
boot.kernelModules = [ "ipmi_watchdog" ];
# Enable systemd watchdog with 30 s interval
systemd.watchdog.runtimeTime = "30s";
systemd.settings.Manager.RuntimeWatchdogSec = 30;
}

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@ -1,3 +1,10 @@
{
services.nixseparatedebuginfod.enable = true;
services.nixseparatedebuginfod2 = {
enable = true;
substituters = [
"local:"
"https://cache.nixos.org"
"http://hut/cache"
];
};
}

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@ -19,7 +19,11 @@ let
cudainfo = prev.callPackage ./pkgs/cudainfo/default.nix { };
#extrae = callPackage ./pkgs/extrae/default.nix { }; # Broken and outdated
gpi-2 = callPackage ./pkgs/gpi-2/default.nix { };
intel-apt = callPackage ./pkgs/intel-oneapi/packages.nix { };
intelPackages_2023 = callPackage ./pkgs/intel-oneapi/2023.nix { };
intelPackages_2024 = final.intel-apt.hpckit_2024;
intelPackages_2025 = final.intel-apt.hpckit_2025;
intelPackages = final.intelPackages_2025;
jemallocNanos6 = callPackage ./pkgs/nanos6/jemalloc.nix { };
# FIXME: Extend this to all linuxPackages variants. Open problem, see:
# https://discourse.nixos.org/t/whats-the-right-way-to-make-a-custom-kernel-module-available/4636
@ -30,7 +34,8 @@ let
amd-uprof-driver = _prev.callPackage ./pkgs/amd-uprof/driver.nix { };
});
lmbench = callPackage ./pkgs/lmbench/default.nix { };
mcxx = callPackage ./pkgs/mcxx/default.nix { };
# Broken and unmantained
# mcxx = callPackage ./pkgs/mcxx/default.nix { };
meteocat-exporter = prev.callPackage ./pkgs/meteocat-exporter/default.nix { };
mpi = final.mpich; # Set MPICH as default
mpich = callPackage ./pkgs/mpich/default.nix { mpich = prev.mpich; };
@ -43,6 +48,7 @@ let
#nix-wrap = callPackage ./pkgs/nix-wrap/default.nix { };
nodes = callPackage ./pkgs/nodes/default.nix { };
nosv = callPackage ./pkgs/nosv/default.nix { };
oneMath = callPackage ./pkgs/onemath/default.nix { };
openmp = callPackage ./pkgs/llvm-ompss2/openmp.nix { monorepoSrc = final.clangOmpss2Unwrapped.src; version = final.clangOmpss2Unwrapped.version; };
openmpv = final.openmp.override { enableNosv = true; enableOvni = true; };
osumb = callPackage ./pkgs/osu/default.nix { };
@ -60,6 +66,8 @@ let
stdenvClangOmpss2NodesOmpv = final.stdenv.override { cc = final.clangOmpss2NodesOmpv; allowedRequisites = null; };
tagaspi = callPackage ./pkgs/tagaspi/default.nix { };
tampi = callPackage ./pkgs/tampi/default.nix { };
tasycl = callPackage ./pkgs/tasycl/default.nix { };
tasycl-acpp = callPackage ./pkgs/tasycl/default.nix { useIntel = false; };
upc-qaire-exporter = prev.callPackage ./pkgs/upc-qaire-exporter/default.nix { };
wxparaver = callPackage ./pkgs/paraver/default.nix { };
};
@ -69,6 +77,8 @@ let
#sigsegv = callPackage ./test/reproducers/sigsegv.nix { };
hello-c = callPackage ./test/compilers/hello-c.nix { };
hello-cpp = callPackage ./test/compilers/hello-cpp.nix { };
hello-sycl = callPackage ./test/compilers/hello-sycl.nix { };
hello-syclompss = callPackage ./test/compilers/icpx-ompss2.nix { };
lto = callPackage ./test/compilers/lto.nix { };
asan = callPackage ./test/compilers/asan.nix { };
intel2023-icx-c = hello-c.override { stdenv = final.intelPackages_2023.stdenv; };
@ -78,6 +88,13 @@ let
intel2023-ifort = callPackage ./test/compilers/hello-f.nix {
stdenv = final.intelPackages_2023.stdenv-ifort;
};
intel2024-icx-c = hello-c.override { stdenv = final.intelPackages_2024.stdenv; };
intel2025-icx-c = hello-c.override { stdenv = final.intelPackages_2025.stdenv; };
intel2024-icx-cpp = hello-cpp.override { stdenv = final.intelPackages_2024.stdenv; };
intel2025-icx-cpp = hello-cpp.override { stdenv = final.intelPackages_2025.stdenv; };
# intel2023-sycl = hello-sycl.override { intelPackages = final.intelPackages_2023; }; # broken
intel2024-sycl = hello-sycl.override { intelPackages = final.intelPackages_2024; };
intel2025-sycl = hello-sycl.override { intelPackages = final.intelPackages_2025; };
clangOmpss2-lto = lto.override { stdenv = final.stdenvClangOmpss2Nanos6; };
clangOmpss2-asan = asan.override { stdenv = final.stdenvClangOmpss2Nanos6; };
clangOmpss2-task = callPackage ./test/compilers/ompss2.nix {

View File

@ -19,7 +19,7 @@ in stdenv.mkDerivation {
'';
hardeningDisable = [ "pic" "format" ];
nativeBuildInputs = kernel.moduleBuildDependencies;
patches = [ ./makefile.patch ./hrtimer.patch ];
patches = [ ./makefile.patch ./hrtimer.patch ./remove-wr-rdmsrq.patch ];
makeFlags = [
"KERNEL_VERSION=${kernel.modDirVersion}"
"KERNEL_DIR=${kernel.dev}/lib/modules/${kernel.modDirVersion}/build"

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@ -0,0 +1,20 @@
diff --git a/inc/PwrProfAsm.h b/inc/PwrProfAsm.h
index d77770a..c93a0e9 100644
--- a/inc/PwrProfAsm.h
+++ b/inc/PwrProfAsm.h
@@ -347,6 +347,7 @@
#endif
+/*
#define rdmsrq(msr,val1,val2,val3,val4) ({ \
__asm__ __volatile__( \
"rdmsr\n" \
@@ -362,6 +363,7 @@
:"c"(msr), "a"(val1), "d"(val2), "S"(val3), "D"(val4) \
); \
})
+*/
#define rdmsrpw(msr,val1,val2,val3,val4) ({ \
__asm__ __volatile__( \

View File

@ -12,7 +12,7 @@ stdenv.mkDerivation (finalAttrs: {
src = ./.;
buildInputs = [
cudatoolkit # Required for nvcc
cudaPackages.cuda_cudart.static # Required for -lcudart_static
(lib.getOutput "static" cudaPackages.cuda_cudart) # Required for -lcudart_static
autoAddDriverRunpath
];
installPhase = ''

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@ -9,7 +9,6 @@
, automake
, libtool
, mpi
, rsync
, gfortran
}:
@ -44,13 +43,24 @@ stdenv.mkDerivation rec {
configureFlags = [
"--with-infiniband=${rdma-core-all}"
"--with-mpi=${mpiAll}"
"--with-mpi=yes" # fixes mpi detection when cross-compiling
"--with-slurm"
"CFLAGS=-fPIC"
"CXXFLAGS=-fPIC"
];
buildInputs = [ slurm mpiAll rdma-core-all autoconf automake libtool rsync gfortran ];
nativeBuildInputs = [
autoconf
automake
gfortran
libtool
];
buildInputs = [
slurm
mpiAll
rdma-core-all
];
hardeningDisable = [ "all" ];
@ -60,5 +70,6 @@ stdenv.mkDerivation rec {
maintainers = with lib.maintainers.bsc; [ rarias ];
platforms = lib.platforms.linux;
license = lib.licenses.gpl3Plus;
cross = false; # infiniband detection does not work
};
}

View File

@ -10,7 +10,7 @@
, zlib
, autoPatchelfHook
, libfabric
, gcc13
, gcc
, wrapCCWith
}:
@ -33,8 +33,6 @@ let
maintainers = with lib.maintainers.bsc; [ abonerib ];
};
gcc = gcc13;
v = {
hpckit = "2023.1.0";
compiler = "2023.1.0";
@ -42,45 +40,19 @@ let
mpi = "2021.9.0";
};
aptPackageIndex = stdenv.mkDerivation {
name = "intel-oneapi-packages";
srcs = [
# Run update.sh to update the package lists
./amd64-packages ./all-packages
];
phases = [ "installPhase" ];
installPhase = ''
awk -F': ' '\
BEGIN { print "[ {" } \
NR>1 && /^Package: / { print "} {"; } \
/: / { printf "%s = \"%s\";\n", $1, $2 } \
END { print "} ]" }' $srcs > $out
'';
};
aptPackages = import aptPackageIndex;
apthost = "https://apt.repos.intel.com/oneapi/";
getSum = pkgList: name:
findMatch = name:
let
matches = lib.filter (x: name == x.Package) pkgList;
#n = lib.length matches;
#match = builtins.trace (name + " -- ${builtins.toString n}") (lib.elemAt matches 0);
match = lib.elemAt matches 0;
in
match.SHA256;
getUrl = pkgList: name:
let
matches = lib.filter (x: name == x.Package) pkgList;
#match = assert lib.length matches == 1; lib.elemAt matches 0;
aptPackages = builtins.fromJSON (builtins.readFile ./packages.json);
matches = lib.filter (x: name == x.pname) aptPackages;
n = lib.length matches;
match =
#builtins.trace (name + " -- n=${builtins.toString n}")
(lib.elemAt matches 0);
match = builtins.traceVerbose (name + " -- ${builtins.toString n}") (builtins.head matches);
apthost = "https://apt.repos.intel.com/oneapi/";
in
apthost + match.Filename;
{
url = apthost + match.filename;
sha256 = match.sha256;
};
uncompressDebs = debs: name: stdenv.mkDerivation {
name = name;
@ -100,10 +72,7 @@ let
joinDebs = name: names:
let
urls = builtins.map (x: getUrl aptPackages x) names;
sums = builtins.map (x: getSum aptPackages x) names;
getsrc = url: sha256: builtins.fetchurl { inherit url sha256; };
debs = lib.zipListsWith getsrc urls sums;
debs = builtins.map (x: builtins.fetchurl (findMatch x)) names;
in
uncompressDebs debs "${name}-source";
@ -472,7 +441,7 @@ let
'';
};
ifort-wrapper = wrapIntel rec {
ifort-wrapper = wrapIntel {
cc = intel-compiler-fortran;
mygcc = gcc;
extraBuild = ''

File diff suppressed because it is too large Load Diff

File diff suppressed because it is too large Load Diff

File diff suppressed because one or more lines are too long

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@ -0,0 +1,297 @@
{
lib,
stdenv,
callPackage,
dpkg,
fetchurl,
sqlite,
elfutils,
}:
let
inherit (builtins)
attrNames
attrValues
concatMap
elem
filter
fromJSON
getAttr
groupBy
head
isNull
listToAttrs
map
mapAttrs
readFile
replaceStrings
splitVersion
;
inherit (lib)
converge
findFirst
groupBy'
hasPrefix
optional
pipe
take
toInt
toList
versionAtLeast
versionOlder
;
aptData = fromJSON (readFile ./packages.json);
# Compare versions in debian control file syntax
# See: https://www.debian.org/doc/debian-policy/ch-relationships.html#syntax-of-relationship-fields
#
# NOTE: this is not a proper version comparison
#
# A proper version solver, should aggregate dependencies with the same name
# and compute the constraint (e.g. a (>= 2) a (<< 5) -> 2 <= a << 5)
#
# But in the intel repo, there are no such "duplicated" dependencies to specify
# upper limits, which leads to issues when intel-hpckit-2021 depends on things
# like intel-basekit >= 2021.1.0-2403 and we end up installing the newest
# basekit instead of the one from 2021.
#
# To mitigate this, >= is set to take the latest version with matching major
# and minor (only revision and patch are allowed to change)
compareVersions =
got: kind: want:
let
g0 = take 2 (splitVersion got);
w0 = take 2 (splitVersion want);
in
if isNull want then
true
else if kind == "=" then
got == want
else if kind == "<<" then
versionOlder got want
else if kind == "<=" then
versionAtLeast want got
else if kind == ">>" then
versionOlder want got
else if kind == ">=" then
(g0 == w0) && versionAtLeast got want # always match major version
else
throw "unknown operation: ${kind}";
findMatching =
{
pname,
kind,
version,
}:
findFirst (x: pname == x.pname && compareVersions x.version kind version) null aptData;
isIntel = pkg: (hasPrefix "intel-" pkg.pname);
expandDeps =
pkg: (map findMatching (filter isIntel pkg.dependencies)) ++ (optional (pkg.size != 0) pkg);
# get the oldest by major version. If they have the same major version, take
# the newest. This prevents most issues with resolutions
# versionOlder b a -> true if b is older than a (b `older` a)
getNewerInMajor =
a: b:
let
va = a.version;
vb = b.version;
va0 = head (splitVersion va);
vb0 = head (splitVersion vb);
in
if isNull a then
b
else if va0 != vb0 then
if va0 > vb0 then b else a
else if versionOlder vb va then
a
else
b;
removeDups = l: attrValues (groupBy' getNewerInMajor null (getAttr "provides") l);
_resolveDeps = converge (l: removeDups (concatMap expandDeps l));
resolveDeps =
pkg:
let
deps = _resolveDeps (toList pkg);
namedDeps = (map (x: "${x.pname}-${x.version}") deps);
in
builtins.traceVerbose (builtins.deepSeq namedDeps namedDeps) deps;
blacklist = [
"intel-basekit-env"
"intel-basekit-getting-started"
"intel-hpckit-env"
"intel-hpckit-getting-started"
"intel-oneapi-advisor"
"intel-oneapi-common-licensing"
"intel-oneapi-common-oneapi-vars"
"intel-oneapi-common-vars"
"intel-oneapi-compiler-cpp-eclipse-cfg"
"intel-oneapi-compiler-dpcpp-eclipse-cfg"
"intel-oneapi-condaindex"
"intel-oneapi-dev-utilities-eclipse-cfg"
"intel-oneapi-dpcpp-ct-eclipse-cfg"
"intel-oneapi-eclipse-ide"
"intel-oneapi-hpc-toolkit-getting-started"
"intel-oneapi-icc-eclipse-plugin-cpp"
"intel-oneapi-vtune"
"intel-oneapi-vtune-eclipse-plugin-vtune"
];
isInBlacklist = pkg: elem pkg.provides blacklist;
removeBlacklist = filter (e: !(isInBlacklist e));
dpkgExtractAll =
pname: version:
{ srcs, deps }:
stdenv.mkDerivation {
inherit pname version srcs;
nativeBuildInputs = [ dpkg ];
phases = [ "installPhase" ];
passthru = { inherit deps; };
installPhase = ''
mkdir -p $out
for src in $srcs; do
echo "Unpacking $src"
dpkg -x $src $out
done
'';
};
apthost = "https://apt.repos.intel.com/oneapi/";
fetchDeb =
p:
fetchurl {
url = apthost + p.filename;
inherit (p) sha256;
};
buildIntel =
pkg:
pipe pkg [
resolveDeps
removeBlacklist
(l: {
srcs = map fetchDeb l;
deps = l;
})
(dpkgExtractAll "${pkg.provides}-extracted" pkg.version)
];
findHpcKit =
year:
findMatching {
pname = "intel-hpckit";
kind = "<<";
version = toString (year + 1);
};
years = map toInt (attrNames components);
patchIntel = callPackage ./patch_intel.nix { };
# Version information for each hpckit. This is used to normalize the paths
# so that files are in $out/{bin,lib,include...} instead of all over the place
# in $out/opt/intel/oneapi/*/*/{...}.
#
# The most important is the compiler component, which is used to build the
# stdenv for the hpckit.
#
# NOTE: this have to be manually specified, so we can avoid IFD. To add a
# new version, add a new field with an empty attrset, (e.g. "2026" = {}; ),
# build hpckit_2026.unpatched and use the values from
# result/opt/intel/oneapi/* to populate the attrset.
#
# WARN: if there are more than one version in the folders of the unpatched
# components, our dependency resolution hacks have probably failed and the
# package set may be broken.
components = {
"2025" = {
ishmem = "1.4";
pti = "0.13";
tcm = "1.4";
umf = "0.11";
ccl = "2021.16";
compiler = "2025.2";
dal = "2025.8";
debugger = "2025.2";
dev-utilities = "2025.2";
dnnl = "2025.2";
dpcpp-ct = "2025.2";
dpl = "2022.9";
ipp = "2022.2";
ippcp = "2025.2";
mkl = "2025.2";
mpi = "2021.16";
tbb = "2022.2";
};
"2024" = {
tcm = "1.1";
ccl = "2021.13";
compiler = "2024.2";
dal = "2024.6";
debugger = "2024.2";
dev-utilities = "2024.2";
diagnostics = "2024.2";
dnnl = "2024.2";
dpcpp-ct = "2024.2";
dpl = "2022.6";
ipp = "2021.12";
ippcp = "2021.12";
mkl = "2024.2";
mpi = "2021.13";
tbb = "2021.13";
extraPackages = [
sqlite
elfutils
];
};
};
replaceDots = replaceStrings [ "." ] [ "_" ];
in
lib.recurseIntoAttrs (
listToAttrs (
map (
year:
let
year_str = toString year;
in
{
name = "hpckit_${year_str}";
value = patchIntel {
unpatched = buildIntel (findHpcKit year);
components = components.${year_str};
};
}
) years
)
)
// {
apt = pipe aptData [
(groupBy (p: replaceDots p.provides))
(mapAttrs (
_: l:
listToAttrs (
map (pkg: {
name = replaceDots ("v" + pkg.version);
value = pkg;
}) l
)
))
];
inherit resolveDeps patchIntel buildIntel;
}

View File

@ -0,0 +1,189 @@
{
stdenv,
stdenvNoCC,
lib,
symlinkJoin,
autoPatchelfHook,
wrapCCWith,
overrideCC,
gcc,
hwloc,
libelf,
libffi_3_3,
libpsm2,
libuuid,
libxml2,
numactl,
ocl-icd,
openssl,
python3,
rdma-core,
ucx,
zlib,
}:
lib.makeOverridable (
{
unpatched,
components ? { },
extraPackages ? components.extraPackages or [ ],
}:
let
inherit (builtins)
attrValues
filter
mapAttrs
removeAttrs
;
__components = removeAttrs components [ "extraPackages" ];
_components = __components;
# _components = lib.traceSeqN 2 {
# inherit unpatched __components;
# deps = builtins.map (x: "${x.pname}-${x.version}") unpatched.deps;
# } __components;
wrapIntel =
cc:
let
targetConfig = stdenv.targetPlatform.config;
in
(wrapCCWith {
inherit cc;
nixSupport = {
cc-ldflags = [
"-L${gcc.cc}/lib/gcc/${targetConfig}/${gcc.version}"
"-L${gcc.cc.lib}/lib"
"-L${cc}/lib"
];
cc-cflags = [
"--gcc-toolchain=${gcc.cc}"
"-isystem \"${cc.original}/lib/clang/*/include\""
"-isystem ${cc}/include"
"-isystem ${cc}/include/intel64"
"-isystem ${gcc.cc}/lib/gcc/${targetConfig}/${gcc.version}/include"
];
libcxx-cxxflags = [
# "--gcc-toolchain=${gcc.cc}"
"-isystem ${gcc.cc}/include/c++/${gcc.version}"
"-isystem ${gcc.cc}/include/c++/${gcc.version}/${targetConfig}"
];
};
extraBuildCommands = ''
# FIXME: We should find a better way to modify the PATH instead of using
# this ugly hack. See https://jungle.bsc.es/git/rarias/bscpkgs/issues/9
echo 'path_backup="${gcc.cc}/bin:$path_backup"' >>$out/nix-support/cc-wrapper-hook
# Disable hardening by default
echo "" > $out/nix-support/add-hardening.sh
wrap icx $wrapper $ccPath/icx
wrap icpx $wrapper $ccPath/icpx
wrap ifx $wrapper $ccPath/ifx
ln -s $out/bin/icpx $out/bin/c++
ln -s $out/bin/icx $out/bin/cc
sed -i 's/.*isCxx=0/isCxx=1/' $out/bin/icpx
# Use this to detect when a compiler subprocess is called
# from icpx (--fsycl-host-compiler)
echo 'export NIX_CC_WRAPPER_INTEL=1' >>$out/nix-support/cc-wrapper-hook
# oneMath looks for sycl libraries in bin/../lib
ln -s ${cc}/lib $out/lib
ln -s ${cc}/include $out/include
'';
}).overrideAttrs
(old: {
installPhase = old.installPhase + ''
export named_cc="icx"
export named_cxx="icpx"
export named_fc="ifx"
'';
});
in
stdenvNoCC.mkDerivation (finalAttrs: {
pname = lib.removeSuffix "-extracted" unpatched.pname;
inherit (unpatched) version;
src = unpatched;
phases = [
"installPhase"
"fixupPhase"
];
buildInputs = [
libffi_3_3
libelf
libxml2
hwloc
numactl
libuuid
libpsm2
zlib
ocl-icd
rdma-core
ucx
openssl
python3
stdenv.cc.cc.lib
]
++ extraPackages;
autoPatchelfIgnoreMissingDeps = [
"libhwloc.so.5"
"libcuda.so.1"
"libze_loader.so.1"
];
# There are broken symlinks that go outside packages, ignore them
dontCheckForBrokenSymlinks = true;
nativeBuildInputs = [ autoPatchelfHook ];
installPhase = ''
cp -r $src/opt/intel/oneapi/ $out
'';
passthru =
let
pkgs = mapAttrs (
folder: version:
let
original = "${finalAttrs.finalPackage}/${folder}/${version}";
in
(symlinkJoin {
pname = "intel-${folder}";
inherit version;
paths = [ original ];
}).overrideAttrs
{ passthru = { inherit original; }; }
) _components;
in
pkgs
// {
inherit unpatched;
pkgs = lib.recurseIntoAttrs pkgs;
components = _components;
# This contains all packages properly symlinked into toplevel directories
# in $out.
#
# NOTE: there are clashes with packages that have symlinks outside their
# scope (libtcm and env/vars.sh)
all = symlinkJoin {
pname = finalAttrs.finalPackage + "-symlinked";
inherit (finalAttrs.finalPackage) version;
paths = filter lib.isDerivation (attrValues finalAttrs.finalPackage.pkgs);
};
stdenv = overrideCC stdenv finalAttrs.finalPackage.cc;
cc = wrapIntel finalAttrs.finalPackage.pkgs.compiler;
};
})
)

29
pkgs/intel-oneapi/process.jq Executable file
View File

@ -0,0 +1,29 @@
#!/usr/bin/env -S jq -f
def extract_fields: {
pname : .Package,
version : .Version,
provides : .Package | sub("[0-9.-]*$"; ""),
filename : .Filename,
size : ."Installed-Size" | tonumber,
sha256 : .SHA256,
dependencies : .Depends,
} ;
# parses dependencies into a list of [{.pname, .kind, .version}]
# some dependencies do not have a version specified, in which case, kind = version = null
#
# example dependencies:
# intel-oneapi-common-vars (>= 2023.0.0-25325), intel-oneapi-common-licensing-2023.0.0
def split_dependencies : map(try(.dependencies |= split(",\\s?"; "")) // .dependencies |= []) ;
def match_version : capture("(?<pname>[a-zA-Z0-9_\\-.]*) *(\\((?<kind>[<>=]*) *(?<version>.*)\\))?"; "") ;
def parse_dependencies : map_values(.dependencies.[] |= match_version) ;
def sort_version_decreasing : sort_by(.version | split("[-.]"; "") | map(tonumber)) | reverse ;
map(extract_fields) | split_dependencies | parse_dependencies | sort_version_decreasing
# [.[] | select(.pname == "intel-hpckit") | .version]

29
pkgs/intel-oneapi/toJson.awk Executable file
View File

@ -0,0 +1,29 @@
#!/usr/bin/env -S awk -f
BEGIN {
FS=": "
prev_empty=1
t=" "
print "[ {"
}
!NF { # empty line, update separator so next non empty line closes the dict
prev_empty=1
t="},\n{ "
next # skip line (we won't match anything else)
}
{
printf t "\"%s\" : \"%s\"\n", $1, $2
if (prev_empty) {
# we were the first after a group of empty lines, following ones have to
# have a comma
prev_empty=0
t=", "
}
}
END { print "} ]" }

View File

@ -1,4 +1,11 @@
#!/bin/sh
curl https://apt.repos.intel.com/oneapi/dists/all/main/binary-amd64/Packages -o amd64-packages
curl https://apt.repos.intel.com/oneapi/dists/all/main/binary-all/Packages -o all-packages
out_64=$(mktemp intel-api.64.XXXXXX)
out_all=$(mktemp intel-api.all.XXXXXX)
trap 'rm -f "$out_64" "$out_all"' EXIT INT HUP
curl https://apt.repos.intel.com/oneapi/dists/all/main/binary-amd64/Packages -o "$out_64"
curl https://apt.repos.intel.com/oneapi/dists/all/main/binary-all/Packages -o "$out_all"
# NOTE: we use `jq -r tostring` to minify the json (3.2Mb -> 2.3Mb)
cat "$out_64" "$out_all" | ./toJson.awk | ./process.jq | jq -r tostring >packages.json

View File

@ -3,6 +3,7 @@
, lib
, gcc
, clangOmpss2Unwrapped
, writeShellScript
, openmp ? null
, wrapCCWith
, llvmPackages_latest
@ -27,20 +28,17 @@ let
# We need to replace the lld linker from bintools with our linker just built,
# otherwise we run into incompatibility issues when mixing compiler and linker
# versions.
bintools-unwrapped = llvmPackages_latest.tools.bintools-unwrapped.override {
bintools-unwrapped = llvmPackages_latest.bintools-unwrapped.override {
lld = clangOmpss2Unwrapped;
};
bintools = llvmPackages_latest.tools.bintools.override {
bintools = llvmPackages_latest.bintools.override {
bintools = bintools-unwrapped;
};
targetConfig = stdenv.targetPlatform.config;
inherit gcc;
cc = clangOmpss2Unwrapped;
gccVersion = with versions; let v = gcc.version; in concatStringsSep "." [(major v) (minor v) (patch v)];
in wrapCCWith {
inherit cc bintools;
# extraPackages adds packages to depsTargetTargetPropagated
extraPackages = optional (openmp != null) openmp;
extraBuildCommands = ''
echo "-target ${targetConfig}" >> $out/nix-support/cc-cflags
echo "-B${gcc.cc}/lib/gcc/${targetConfig}/${gccVersion}" >> $out/nix-support/cc-cflags
@ -57,14 +55,50 @@ in wrapCCWith {
echo "--gcc-toolchain=${gcc}" >> $out/nix-support/cc-cflags
wrap clang++ $wrapper $ccPath/clang++
'' + optionalString (openmp != null) ''
echo "export OPENMP_RUNTIME=${ompname}" >> $out/nix-support/cc-wrapper-hook
'' + optionalString (ompss2rt != null) ''
echo "export OMPSS2_RUNTIME=${rtname}" >> $out/nix-support/cc-wrapper-hook
echo "export ${homevar}=${ompss2rt}" >> $out/nix-support/cc-wrapper-hook
'' + optionalString (ompss2rt != null && ompss2rt.pname == "nodes") ''
echo "export NOSV_HOME=${ompss2rt.nosv}" >> $out/nix-support/cc-wrapper-hook
'';
}
envExports = lib.optionalString (openmp != null) ''
echo "export OPENMP_RUNTIME=${ompname}" >> $out/nix-support/cc-wrapper-hook
'' + optionalString (ompss2rt != null) ''
echo "export OMPSS2_RUNTIME=${rtname}" >> $out/nix-support/cc-wrapper-hook
echo "export ${homevar}=${ompss2rt}" >> $out/nix-support/cc-wrapper-hook
'' + optionalString (ompss2rt != null && ompss2rt.pname == "nodes") ''
echo "export NOSV_HOME=${ompss2rt.nosv}" >> $out/nix-support/cc-wrapper-hook
'';
extraPackages = optional (openmp != null) openmp;
wrappedCC = wrapCCWith {
# extraPackages adds packages to depsTargetTargetPropagated
inherit cc bintools extraPackages;
extraBuildCommands = extraBuildCommands + envExports;
};
resetIntelCCFlags = let tconf = builtins.replaceStrings ["-"] ["_"] targetConfig;
in writeShellScript "remove-intel.sh" ''
if [ "''${NIX_CC_WRAPPER_INTEL:-0}" = 1 ]; then
unset NIX_CFLAGS_COMPILE_${tconf}
unset NIX_CC_WRAPPER_FLAGS_SET_${tconf}
if (( "''${NIX_DEBUG:-0}" >= 1 )); then
echo "ompss2: cleaned NIX_CFLAGS_COMPILE_${tconf} (invokation from intel compiler detected)"
fi
fi
'';
intelExtraBuildCommands = ''
sed -i 's|# Flirting.*|source ${resetIntelCCFlags}\n\n&|' $out/bin/clang
sed -i 's|# Flirting.*|source ${resetIntelCCFlags}\n\n&|' $out/bin/clang++
'';
wrappedCCIntel = wrapCCWith {
inherit cc bintools extraPackages;
# extraPackages adds packages to depsTargetTargetPropagated
extraBuildCommands = intelExtraBuildCommands + envExports;
};
in wrappedCC.overrideAttrs (oldAttrs: {
passthru = oldAttrs.passthru // {
forIcpx = wrappedCCIntel;
};
})

View File

@ -65,6 +65,7 @@ stdenv.mkDerivation rec {
];
meta = {
broken = true;
homepage = "https://github.com/bsc-pm/mcxx";
description = "C/C++/Fortran source-to-source compilation infrastructure aimed at fast prototyping";
maintainers = with lib.maintainers.bsc; [ rpenacob ];

View File

@ -1,9 +1,11 @@
{ python3Packages, lib }:
python3Packages.buildPythonApplication rec {
python3Packages.buildPythonApplication {
pname = "meteocat-exporter";
version = "1.0";
pyproject = true;
src = ./.;
doCheck = false;

View File

@ -6,6 +6,13 @@
, pmix
, gfortran
, symlinkJoin
# Disabled when cross-compiling
# To fix cross compilation, we should fill the values in:
# https://github.com/pmodels/mpich/blob/main/maint/fcrosscompile/cross_values.txt.in
# For each arch
, enableFortran ? stdenv.hostPlatform == stdenv.buildPlatform
, perl
, targetPackages
}:
let
@ -15,10 +22,13 @@ let
paths = [ pmix.dev pmix.out ];
};
in mpich.overrideAttrs (old: {
buildInput = old.buildInputs ++ [
buildInputs = old.buildInputs ++ [
libfabric
pmixAll
];
nativeBuildInputs = old.nativeBuildInputs ++ [
perl
];
configureFlags = [
"--enable-shared"
"--enable-sharedlib"
@ -31,10 +41,21 @@ in mpich.overrideAttrs (old: {
] ++ lib.optionals (lib.versionAtLeast gfortran.version "10") [
"FFLAGS=-fallow-argument-mismatch" # https://github.com/pmodels/mpich/issues/4300
"FCFLAGS=-fallow-argument-mismatch"
] ++ lib.optionals (!enableFortran) [
"--disable-fortran"
];
preFixup = ''
sed -i 's:^CC=.*:CC=${targetPackages.stdenv.cc}/bin/${targetPackages.stdenv.cc.targetPrefix}cc:' $out/bin/mpicc
sed -i 's:^CXX=.*:CXX=${targetPackages.stdenv.cc}/bin/${targetPackages.stdenv.cc.targetPrefix}c++:' $out/bin/mpicxx
'' + lib.optionalString enableFortran ''
sed -i 's:^FC=.*:FC=${targetPackages.gfortran or gfortran}/bin/${targetPackages.gfortran.targetPrefix or gfortran.targetPrefix}gfortran:' $out/bin/mpifort
'';
hardeningDisable = [ "all" ];
meta = old.meta // {
maintainers = old.meta.maintainers ++ (with lib.maintainers.bsc; [ rarias ]);
cross = true;
};
})

91
pkgs/onemath/default.nix Normal file
View File

@ -0,0 +1,91 @@
{
lib,
fetchFromGitHub,
cmake,
withCFlags,
intelPackages,
mklSupport ? true,
config,
cudaSupport ? config.cudaSupport,
cudaPackages ? { },
rocmSupport ? config.rocmSupport,
hipTargets ? null, # only one target at a time supported
rocmPackages ? { },
}:
let
# rocmSupport is not enough, we need a specific target
enableHip = rocmSupport && hipTargets != null;
stdenv = withCFlags (lib.optionals cudaSupport [
"--cuda-path=${cudaPackages.cudatoolkit}"
]) intelPackages.stdenv;
in
# at least one backend has to be enabled
assert mklSupport || cudaSupport || enableHip;
stdenv.mkDerivation rec {
pname = "oneMath";
version = "0.8";
src = fetchFromGitHub {
owner = "uxlfoundation";
repo = "oneMath";
rev = "v${version}";
sha256 = "sha256-xK8lKI3oqKlx3xtvdScpMq+HXAuoYCP0BZdkEqnJP5o=";
};
cmakeFlags = [
(lib.cmakeBool "ENABLE_MKLCPU_BACKEND" mklSupport)
(lib.cmakeBool "ENABLE_MKLGPU_BACKEND" mklSupport)
(lib.cmakeBool "ENABLE_CUBLAS_BACKEND" cudaSupport)
(lib.cmakeBool "ENABLE_CUFFT_BACKEND" cudaSupport)
(lib.cmakeBool "ENABLE_CURAND_BACKEND" cudaSupport)
(lib.cmakeBool "ENABLE_CUSOLVER_BACKEND" cudaSupport)
(lib.cmakeBool "ENABLE_CUSPARSE_BACKEND" cudaSupport)
(lib.cmakeBool "ENABLE_ROCBLAS_BACKEND" enableHip)
(lib.cmakeBool "ENABLE_ROCFFT_BACKEND" enableHip)
(lib.cmakeBool "ENABLE_ROCSOLVER_BACKEND" enableHip)
(lib.cmakeBool "ENABLE_ROCRAND_BACKEND" enableHip)
(lib.cmakeBool "ENABLE_ROCSPARSE_BACKEND" enableHip)
(lib.cmakeBool "BUILD_FUNCTIONAL_TESTS" false)
(lib.cmakeBool "BUILD_EXAMPLES" false)
]
++ lib.optionals enableHip [
(lib.cmakeFeature "HIP_TARGETS" hipTargets)
];
nativeBuildInputs = [ cmake ];
buildInputs =
lib.optionals (mklSupport) [
intelPackages.mkl
intelPackages.tbb
]
++ lib.optionals (enableHip) [
rocmPackages.rocmPath
rocmPackages.rocblas
rocmPackages.rocfft
rocmPackages.rocsolver
rocmPackages.rocrand
rocmPackages.rocsparse
]
++ lib.optionals (cudaSupport) [
(lib.getDev cudaPackages.cuda_cudart)
cudaPackages.cudatoolkit
cudaPackages.libcublas
cudaPackages.libcurand
cudaPackages.libcufft
cudaPackages.libcusparse
cudaPackages.libcusolver
];
}

View File

@ -32,6 +32,11 @@ stdenv.mkDerivation rec {
"CXX=mpicxx"
];
env = {
MPICH_CC="${stdenv.cc}/bin/${stdenv.cc.targetPrefix}cc";
MPICH_CXX="${stdenv.cc}/bin/${stdenv.cc.targetPrefix}c++";
};
postInstall = ''
mkdir -p $out/bin
for f in $(find $out -executable -type f); do
@ -44,5 +49,6 @@ stdenv.mkDerivation rec {
homepage = "http://mvapich.cse.ohio-state.edu/benchmarks/";
maintainers = [ ];
platforms = lib.platforms.all;
cross = true;
};
}

View File

@ -12,7 +12,7 @@
, paraverKernel
, openssl
, glibcLocales
, wrapGAppsHook
, wrapGAppsHook3
}:
let
@ -64,7 +64,7 @@ stdenv.mkDerivation rec {
autoconf
automake
autoreconfHook
wrapGAppsHook
wrapGAppsHook3
];
buildInputs = [

View File

@ -35,5 +35,6 @@ stdenv.mkDerivation rec {
maintainers = with lib.maintainers.bsc; [ rarias ];
platforms = lib.platforms.linux;
license = lib.licenses.mit;
cross = true;
};
}

View File

@ -5,23 +5,14 @@
, automake
, autoconf
, libtool
, mpi
, autoreconfHook
, gpi-2
, boost
, numactl
, rdma-core
, gfortran
, symlinkJoin
}:
let
mpiAll = symlinkJoin {
name = "mpi-all";
paths = [ mpi.all ];
};
in
stdenv.mkDerivation rec {
pname = "tagaspi";
enableParallelBuilding = true;
@ -35,16 +26,18 @@ stdenv.mkDerivation rec {
hash = "sha256-RGG/Re2uM293HduZfGzKUWioDtwnSYYdfeG9pVrX9EM=";
};
buildInputs = [
nativeBuildInputs = [
autoreconfHook
automake
autoconf
libtool
gfortran
];
buildInputs = [
boost
numactl
rdma-core
gfortran
mpiAll
];
dontDisableStatic = true;
@ -63,5 +56,6 @@ stdenv.mkDerivation rec {
maintainers = with lib.maintainers.bsc; [ rarias ];
platforms = lib.platforms.linux;
license = lib.licenses.gpl3Plus;
cross = false; # gpi-2 cannot cross
};
}

View File

@ -68,5 +68,6 @@ in stdenv.mkDerivation {
maintainers = with lib.maintainers.bsc; [ rarias ];
platforms = lib.platforms.linux;
license = lib.licenses.gpl3Plus;
cross = true;
};
}

87
pkgs/tasycl/default.nix Normal file
View File

@ -0,0 +1,87 @@
{
lib,
stdenv,
autoconf,
automake,
autoreconfHook,
boost,
fetchFromGitHub,
gnumake,
libtool,
withCFlags,
useIntel ? true,
adaptivecpp ? null,
intelPackages ? null,
useGit ? false,
gitUrl ? "git@gitlab-internal.bsc.es:task-awareness/tasycl/tasycl.git",
gitBranch ? "main",
gitCommit ? "78f98dcf60a66e0eaa3b4ebcf55be076bec64825",
}:
assert !useIntel -> adaptivecpp != null;
assert useIntel -> intelPackages != null;
let
variant = if useIntel then "intel" else "acpp";
syclStdenv = withCFlags [ "-O3" ] (if useIntel then intelPackages.stdenv else stdenv);
release = rec {
version = "2.1.0";
src = fetchFromGitHub {
owner = "bsc-pm";
repo = "tasycl";
rev = version;
hash = "sha256-0kXnb0lHeQNHR27GTLbJ8xbiICLU8k2+FqEnnFSrzzo=";
};
};
git = rec {
version = src.shortRev;
src = builtins.fetchGit {
url = gitUrl;
ref = gitBranch;
rev = gitCommit;
};
};
source = if (useGit) then git else release;
in
syclStdenv.mkDerivation {
pname = "tasycl-${variant}";
inherit (source) src version;
enableParallelBuilding = true;
separateDebugInfo = true;
nativeBuildInputs = [
autoreconfHook
automake
autoconf
libtool
gnumake
];
buildInputs = [
boost
];
configureFlags = lib.optionals (!useIntel) [
"CXX=${lib.getExe adaptivecpp}"
];
# add symlinks so we can explicitly link with tasycl-intel / tasycl-acpp
postInstall = ''
pushd $out/lib
for i in libtasycl* ; do
ln -s "$i" "''\${i/tasycl/tasycl-${variant}}"
done
popd
'';
hardeningDisable = [ "all" ];
}

View File

@ -1,9 +1,11 @@
{ python3Packages, lib }:
python3Packages.buildPythonApplication rec {
python3Packages.buildPythonApplication {
pname = "upc-qaire-exporter";
version = "1.0";
pyproject = true;
src = ./.;
doCheck = false;

View File

@ -0,0 +1,62 @@
{
intelPackages,
writeText,
strace,
}:
let
stdenv = intelPackages.stdenv;
hello_sycl = writeText "hello.cpp" ''
#include <sycl/sycl.hpp>
class hello_world;
int main(int argc, char** argv) try {
auto device_selector = sycl::default_selector_v;
sycl::queue queue(device_selector);
std::cout << "Running on: "
<< queue.get_device().get_info<sycl::info::device::name>()
<< std::endl;
queue.submit([&] (sycl::handler& cgh) {
auto os = sycl::stream{128, 128, cgh};
cgh.single_task<hello_world>([=]() {
os << "Hello World! (on device)\n";
});
});
return 0;
} catch (sycl::exception &e) {
std::cout << "SYCL exception: " << e.what() << std::endl;
return 0; // we excpect to fail since no devices should be available;
}
'';
in
stdenv.mkDerivation {
version = "0.0.1";
name = "hello-sycl";
buildInputs = [
stdenv
strace
];
src = hello_sycl;
dontUnpack = true;
dontConfigure = true;
NIX_DEBUG = 0;
buildPhase = ''
cp $src hello.cpp
set -x
echo CXX=$CXX
command -v $CXX
$CXX -fsycl hello.cpp -o hello
./hello
set +x
'';
installPhase = ''
touch $out
'';
}

View File

@ -0,0 +1,81 @@
{
writeText,
intelPackages,
nodes,
nosv,
clangOmpss2Nodes,
strace,
}:
let
hello_cpp = writeText "hello.cpp" ''
#include <cstdio>
#include <sycl/sycl.hpp>
int main(int argc, char** argv) try {
sycl::queue queue;
std::cout << "Running on: "
<< queue.get_device().get_info<sycl::info::device::name>()
<< std::endl;
#pragma oss task
queue.submit([&] (sycl::handler& cgh) {
auto os = sycl::stream{128, 128, cgh};
cgh.single_task<class hello_world>([=]() {
os << "Hello World! (on device)\n";
});
}).wait();
return 0;
} catch (sycl::exception &e) {
std::cout << "SYCL exception: " << e.what() << std::endl;
return 0; // we expect to fail since no devices should be available;
}
'';
in
intelPackages.stdenv.mkDerivation {
version = "0.0.1";
name = "hello-syclompss";
src = hello_cpp;
nativeBuildInputs = [
strace
nodes
nosv
];
dontUnpack = true;
dontConfigure = true;
# NODES requires access to /sys/devices to request NUMA information
requiredSystemFeatures = [ "sys-devices" ];
env.NODES_HOME = nodes;
NIX_DEBUG = 1;
buildPhase = ''
cp $src hello.cpp
set -x
echo CXX=$CXX
echo NODES_HOME=$NODES_HOME
command -v $CXX
icpx -Wno-deprecated-declarations -fsycl \
-fsycl-host-compiler=${clangOmpss2Nodes.forIcpx}/bin/clang++ \
-fsycl-host-compiler-options='-Wno-deprecated-declarations -fompss-2=libnodes' \
-lnodes -lnosv \
$NODES_HOME/lib/nodes-main-wrapper.o \
hello.cpp -o hello
./hello
set +x
'';
installPhase = ''
touch $out
'';
}