nbody: update and simplify figures

garlic/fig/nbody/ss.R

@@ -0,0 +1,65 @@
+library(ggplot2)
+library(dplyr, warn.conflicts = FALSE)
+library(scales)
+library(jsonlite)
+library(viridis, warn.conflicts = FALSE)
+
+# Load the arguments (argv)
+args = commandArgs(trailingOnly=TRUE)
+if (length(args)>0) { input_file = args[1] } else { input_file = "input" }
+
+df = jsonlite::stream_in(file(input_file), verbose=FALSE) %>%
+  jsonlite::flatten() %>%
+  select(config.blocksize, config.gitBranch, config.nodes, unit, time) %>%
+  rename(nodes = config.nodes, blocksize=config.blocksize, branch=config.gitBranch) %>%
+
+  mutate(time.nodes = time * nodes) %>%
+
+  mutate(blocksize = as.factor(blocksize)) %>%
+  mutate(nodes = as.factor(nodes)) %>%
+  mutate(branch = as.factor(branch)) %>%
+  mutate(unit = as.factor(unit)) %>%
+
+  group_by(unit) %>%
+
+  mutate(median.time = median(time)) %>%
+  mutate(median.time.nodes = median(time.nodes)) %>%
+  mutate(normalized.time = time / median.time - 1) %>%
+  mutate(log.median.time = log(median.time)) %>%
+
+  ungroup()
+
+dpi = 300
+h = 5
+w = 8
+
+# ---------------------------------------------------------------------
+
+p = ggplot(df, aes(x=nodes, y=normalized.time, color=branch)) +
+  geom_boxplot() +
+  geom_hline(yintercept=c(-0.01, 0.01), linetype="dashed", color="red") +
+  facet_wrap(~ branch) +
+  theme_bw() +
+  labs(x="Nodes", y="Normalized time (s)", title="NBody Scaling: Normalized Time", 
+    subtitle=input_file) + 
+  theme(plot.subtitle=element_text(size=5)) +
+  theme(legend.position="bottom") +
+  theme(legend.text = element_text(size=7))
+
+ggsave("normalized.time.png", plot=p, width=w, height=h, dpi=dpi)
+ggsave("normalized.time.pdf", plot=p, width=w, height=h, dpi=dpi)
+
+# ---------------------------------------------------------------------
+
+p = ggplot(df, aes(x=nodes, y=time.nodes, color=branch)) +
+  geom_point(shape=21, size=3) +
+  geom_line(aes(y=median.time.nodes, group=branch)) +
+  theme_bw() +
+  labs(x="Nodes", y="Time * nodes (s)", title="NBody Scaling: Time * nodes", 
+    subtitle=input_file) + 
+  theme(plot.subtitle=element_text(size=5)) +
+  theme(legend.position="bottom") +
+  theme(legend.text = element_text(size=7))
+
+ggsave("time.nodes.png", plot=p, width=w, height=h, dpi=dpi)
+ggsave("time.nodes.pdf", plot=p, width=w, height=h, dpi=dpi)