#define _POSIX_C_SOURCE 200112L #include #include #include #include #include #include #include #include #include #include "ovni.h" const char progname[] = "ovnisync"; struct offset { /* All in nanoseconds */ double delta_mean; double delta_median; double delta_var; double delta_std; /* The value selected for the offset */ int64_t offset; /* In seconds */ double wall_t0; double wall_t1; char hostname[OVNI_MAX_HOSTNAME]; int rank; int nsamples; /* Flexible array */ double clock_sample[]; }; struct offset_table { int nprocs; struct offset *_offset; struct offset **offset; }; struct options { int nsamples; int ndrift_samples; int drift_wait; /* in seconds */ int verbose; }; static double get_time(clockid_t clock, int use_ns) { struct timespec tv; if(clock_gettime(clock, &tv) != 0) { perror("clock_gettime failed"); exit(EXIT_FAILURE); } if(use_ns) return (double)(tv.tv_sec) * 1.0e9 + (double)tv.tv_nsec; return (double)(tv.tv_sec) + (double)tv.tv_nsec * 1.0e-9; } static int cmp_double(const void *pa, const void *pb) { double a, b; a = *(const double *) pa; b = *(const double *) pb; if(a < b) return -1; else if(a > b) return 1; else return 0; } void usage(int argc, char *argv[]) { fprintf(stderr, "%s: clock synchronization utility\n", progname); fprintf(stderr, "\n"); fprintf(stderr, "Usage: %s [-d ndrift_samples] [-v] [-n nsamples] [-w drift_delay]\n", progname); exit(EXIT_FAILURE); } void parse_options(struct options *options, int argc, char *argv[]) { int opt; /* Default options */ options->ndrift_samples = 1; options->nsamples = 100; options->verbose = 0; options->drift_wait = 5; while ((opt = getopt(argc, argv, "d:vn:w:")) != -1) { switch (opt) { case 'd': options->ndrift_samples = atoi(optarg); break; case 'w': options->drift_wait = atoi(optarg); break; case 'v': options->verbose = 1; break; case 'n': options->nsamples = atoi(optarg); break; default: /* '?' */ usage(argc, argv); } } if (optind < argc) { fprintf(stderr, "error: unexpected extra arguments\n"); exit(EXIT_FAILURE); } } void get_clock_samples(struct offset *offset, int nsamples) { int i; /* Keep the wall time as well */ offset->wall_t0 = get_time(CLOCK_REALTIME, 0); offset->nsamples = nsamples; for(i=0; iclock_sample[i] = get_time(CLOCK_MONOTONIC, 1); } offset->wall_t1 = get_time(CLOCK_REALTIME, 0); } void fill_offset(struct offset *offset, int nsamples) { int warmup_nsamples; /* Identify the rank */ MPI_Comm_rank(MPI_COMM_WORLD, &offset->rank); /* Fill the host name */ if(gethostname(offset->hostname, OVNI_MAX_HOSTNAME) != 0) { perror("gethostname"); exit(EXIT_FAILURE); } //printf("rank=%d hostname=%s\n", offset->rank, offset->hostname); /* Warm up iterations */ warmup_nsamples = nsamples >= 20 ? 20 : nsamples; get_clock_samples(offset, warmup_nsamples); get_clock_samples(offset, nsamples); } void offset_compute_delta(struct offset *ref, struct offset *cur, int nsamples, int verbose) { int i; double *delta; delta = malloc(sizeof(double) * nsamples); if(delta == NULL) { perror("malloc"); exit(EXIT_FAILURE); } for(i=0; iclock_sample[i] - cur->clock_sample[i]; if(verbose) { printf("rank=%d sample=%d delta=%f ref=%f cur=%f\n", cur->rank, i, delta[i], ref->clock_sample[i], cur->clock_sample[i]); } } qsort(delta, nsamples, sizeof(double), cmp_double); cur->delta_median = delta[nsamples / 2]; for(cur->delta_mean=0, i=0; idelta_mean += delta[i]; cur->delta_mean /= nsamples; for(cur->delta_var=0, i=0; idelta_var += (delta[i] - cur->delta_mean) * (delta[i] - cur->delta_mean); cur->delta_var /= (double) (nsamples - 1); cur->delta_std = sqrt(cur->delta_var); /* The median is the selected metric for the offset */ cur->offset = (int64_t) cur->delta_median; free(delta); } size_t offset_size(int nsamples) { return sizeof(struct offset) + sizeof(double) * nsamples; } struct offset * table_get_offset(struct offset_table *table, int i, int nsamples) { char *p; p = (char *) table->_offset; p += i * offset_size(nsamples); return (struct offset *) p; } struct offset_table * build_offset_table(int nsamples, int rank, int verbose) { int i; struct offset_table *table = NULL; struct offset *offset = NULL; void *sendbuf; /* The rank 0 must build the table */ if(rank == 0) { table = malloc(sizeof(*table)); if(table == NULL) { perror("malloc"); exit(EXIT_FAILURE); } MPI_Comm_size(MPI_COMM_WORLD, &table->nprocs); table->_offset = calloc(table->nprocs, offset_size(nsamples)); if(table->_offset == NULL) { perror("malloc"); exit(EXIT_FAILURE); } table->offset = malloc(sizeof(struct offset *) * table->nprocs); if(table->offset == NULL) { perror("malloc"); exit(EXIT_FAILURE); } for(i=0; inprocs; i++) table->offset[i] = table_get_offset(table, i, nsamples); offset = table->offset[0]; } else { /* Otherwise just allocate one offset */ offset = calloc(1, offset_size(nsamples)); if(offset == NULL) { perror("malloc"); exit(EXIT_FAILURE); } table = NULL; } /* Each rank fills its own offset */ fill_offset(offset, nsamples); sendbuf = rank == 0 ? MPI_IN_PLACE : offset; /* Then collect all the offsets into the rank 0 */ MPI_Gather(sendbuf, offset_size(nsamples), MPI_CHAR, offset, offset_size(nsamples), MPI_CHAR, 0, MPI_COMM_WORLD); /* Finish the offsets by computing the deltas on rank 0 */ if(rank == 0) { for(i=0; inprocs; i++) { offset_compute_delta(offset, table->offset[i], nsamples, verbose); } } /* Cleanup for non-zero ranks */ if(rank != 0) free(offset); return table; } void print_drift_header(struct offset_table *table) { int i; //char buf[64]; printf("%-20s", "wallclock"); for(i=0; inprocs; i++) { //sprintf(buf, "rank%d", i); printf(" %-20s", table->offset[i]->hostname); } printf("\n"); } void print_drift_row(struct offset_table *table) { int i; char buf[64]; printf("%-20f", table->offset[0]->wall_t1); for(i=0; inprocs; i++) printf(" %-20ld", table->offset[i]->offset); printf("\n"); } void print_table_detailed(struct offset_table *table) { int i; struct offset *offset; printf("%-10s %-20s %-20s %-20s %-20s\n", "rank", "hostname", "offset_median", "offset_mean", "offset_std"); for(i=0; inprocs; i++) { offset = table->offset[i]; printf("%-10d %-20s %-20ld %-20f %-20f\n", i, offset->hostname, offset->offset, offset->delta_mean, offset->delta_std); } } void do_work(struct options *options, int rank) { int drift_mode; int i; struct offset_table *table; drift_mode = options->ndrift_samples > 1 ? 1 : 0; for(i=0; indrift_samples; i++) { table = build_offset_table(options->nsamples, rank, options->verbose); if(rank == 0) { if(drift_mode) { if(i == 0) print_drift_header(table); print_drift_row(table); } else { print_table_detailed(table); } free(table->_offset); free(table->offset); free(table); } if(drift_mode) sleep(options->drift_wait); } } int main(int argc, char *argv[]) { int rank; struct options options; MPI_Init(&argc, &argv); MPI_Comm_rank(MPI_COMM_WORLD, &rank); parse_options(&options, argc, argv); do_work(&options, rank); MPI_Finalize(); return 0; }