2025-07-16 13:25:41 +02:00
5 changed files with 19 additions and 59 deletions
--- a/flake.lock
+++ b/flake.lock
@@ -10,11 +10,11 @@
        "systems": "systems"
      },
      "locked": {
-        "lastModified": 1723293904,
-        "narHash": "sha256-b+uqzj+Wa6xgMS9aNbX4I+sXeb5biPDi39VgvSFqFvU=",
+        "lastModified": 1750173260,
+        "narHash": "sha256-9P1FziAwl5+3edkfFcr5HeGtQUtrSdk/MksX39GieoA=",
        "owner": "ryantm",
        "repo": "agenix",
-        "rev": "f6291c5935fdc4e0bef208cfc0dcab7e3f7a1c41",
+        "rev": "531beac616433bac6f9e2a19feb8e99a22a66baf",
        "type": "github"
      },
      "original": {
@@ -30,11 +30,11 @@
        ]
      },
      "locked": {
-        "lastModified": 1732868163,
-        "narHash": "sha256-qck4h298AgcNI6BnGhEwl26MTLXjumuJVr+9kak7uPo=",
+        "lastModified": 1749650500,
+        "narHash": "sha256-2MHfVPV6RA7qPSCtXh4+KK0F0UjN+J4z8//+n6NK7Xs=",
        "ref": "refs/heads/master",
-        "rev": "6782fc6c5b5a29e84a7f2c2d1064f4bcb1288c0f",
-        "revCount": 952,
+        "rev": "9d1944c658929b6f98b3f3803fead4d1b91c4405",
+        "revCount": 961,
        "type": "git",
        "url": "https://git.sr.ht/~rodarima/bscpkgs"
      },
@@ -51,11 +51,11 @@
        ]
      },
      "locked": {
-        "lastModified": 1700795494,
-        "narHash": "sha256-gzGLZSiOhf155FW7262kdHo2YDeugp3VuIFb4/GGng0=",
+        "lastModified": 1744478979,
+        "narHash": "sha256-dyN+teG9G82G+m+PX/aSAagkC+vUv0SgUw3XkPhQodQ=",
        "owner": "lnl7",
        "repo": "nix-darwin",
-        "rev": "4b9b83d5a92e8c1fbfd8eb27eda375908c11ec4d",
+        "rev": "43975d782b418ebf4969e9ccba82466728c2851b",
        "type": "github"
      },
      "original": {
@@ -73,11 +73,11 @@
        ]
      },
      "locked": {
-        "lastModified": 1703113217,
-        "narHash": "sha256-7ulcXOk63TIT2lVDSExj7XzFx09LpdSAPtvgtM7yQPE=",
+        "lastModified": 1745494811,
+        "narHash": "sha256-YZCh2o9Ua1n9uCvrvi5pRxtuVNml8X2a03qIFfRKpFs=",
        "owner": "nix-community",
        "repo": "home-manager",
-        "rev": "3bfaacf46133c037bb356193bd2f1765d9dc82c1",
+        "rev": "abfad3d2958c9e6300a883bd443512c55dfeb1be",
        "type": "github"
      },
      "original": {
@@ -88,16 +88,16 @@
    },
    "nixpkgs": {
      "locked": {
-        "lastModified": 1736867362,
-        "narHash": "sha256-i/UJ5I7HoqmFMwZEH6vAvBxOrjjOJNU739lnZnhUln8=",
+        "lastModified": 1752436162,
+        "narHash": "sha256-Kt1UIPi7kZqkSc5HVj6UY5YLHHEzPBkgpNUByuyxtlw=",
        "owner": "NixOS",
        "repo": "nixpkgs",
-        "rev": "9c6b49aeac36e2ed73a8c472f1546f6d9cf1addc",
+        "rev": "dfcd5b901dbab46c9c6e80b265648481aafb01f8",
        "type": "github"
      },
      "original": {
        "owner": "NixOS",
-        "ref": "nixos-24.11",
+        "ref": "nixos-25.05",
        "repo": "nixpkgs",
        "type": "github"
      }
--- a/flake.nix
+++ b/flake.nix
@@ -1,6 +1,6 @@
 {
  inputs = {
-    nixpkgs.url = "github:NixOS/nixpkgs/nixos-24.11";
+    nixpkgs.url = "github:NixOS/nixpkgs/nixos-25.05";
    agenix.url = "github:ryantm/agenix";
    agenix.inputs.nixpkgs.follows = "nixpkgs";
    bscpkgs.url = "git+https://git.sr.ht/~rodarima/bscpkgs";
--- a/m/common/base/env.nix
+++ b/m/common/base/env.nix
@@ -3,7 +3,7 @@
 {
  environment.systemPackages = with pkgs; [
    vim wget git htop tmux pciutils tcpdump ripgrep nix-index nixos-option
-    nix-diff ipmitool freeipmi ethtool lm_sensors ix cmake gnumake file tree
+    nix-diff ipmitool freeipmi ethtool lm_sensors cmake gnumake file tree
    ncdu config.boot.kernelPackages.perf ldns pv
    # From bsckgs overlay
    osumb
--- a/pkgs/mpich-fix-hwtopo.patch
+++ b/pkgs/mpich-fix-hwtopo.patch
@@ -1,36 +0,0 @@
-diff --git a/src/util/mpir_hwtopo.c b/src/util/mpir_hwtopo.c
-index 33e88bc..ee3641c 100644
--- a/src/util/mpir_hwtopo.c
-+++ b/src/util/mpir_hwtopo.c
-@@ -200,18 +200,6 @@ int MPII_hwtopo_init(void)
- #ifdef HAVE_HWLOC
-     bindset = hwloc_bitmap_alloc();
-     hwloc_topology_init(&hwloc_topology);
-    char *xmlfile = MPIR_pmi_get_jobattr("PMI_hwloc_xmlfile");
-    if (xmlfile != NULL) {
-        int rc;
-        rc = hwloc_topology_set_xml(hwloc_topology, xmlfile);
-        if (rc == 0) {
-            /* To have hwloc still actually call OS-specific hooks, the
-             * HWLOC_TOPOLOGY_FLAG_IS_THISSYSTEM has to be set to assert that the loaded
-             * file is really the underlying system. */
-            hwloc_topology_set_flags(hwloc_topology, HWLOC_TOPOLOGY_FLAG_IS_THISSYSTEM);
-        }
-        MPL_free(xmlfile);
-    }
-
-     hwloc_topology_set_io_types_filter(hwloc_topology, HWLOC_TYPE_FILTER_KEEP_ALL);
-     if (!hwloc_topology_load(hwloc_topology)) 
-
--- a/src/mpi/init/local_proc_attrs.c
-+++ b/src/mpi/init/local_proc_attrs.c
-@@ -79,10 +79,6 @@ int MPII_init_local_proc_attrs(int *p_thread_required)
-     /* Set the number of tag bits. The device may override this value. */
-     MPIR_Process.tag_bits = MPIR_TAG_BITS_DEFAULT;
-
-    char *requested_kinds = MPIR_pmi_get_jobattr("PMI_mpi_memory_alloc_kinds");
-    MPIR_get_supported_memory_kinds(requested_kinds, &MPIR_Process.memory_alloc_kinds);
-    MPL_free(requested_kinds);
-
-     return mpi_errno;
- }
--- a/pkgs/overlay.nix
+++ b/pkgs/overlay.nix
@@ -11,10 +11,6 @@ final: prev:
      paths = [ pmix.dev pmix.out ];
    };
  in prev.mpich.overrideAttrs (old: {
-    patches = (old.patches or []) ++ [
-      # See https://github.com/pmodels/mpich/issues/6946
-      ./mpich-fix-hwtopo.patch
-    ];
    buildInput = old.buildInputs ++ [
      libfabric
      pmixAll