Update versions to 2025.2

New apt list does not have Package: as the first entry for all packages

.gitea/workflows/ci.yaml

@@ -12,9 +12,4 @@ jobs:
     runs-on: native
     steps:
       - uses: https://gitea.com/ScMi1/checkout@v1.4
-      - run: nix build -L --no-link --print-out-paths .#bsc.ci.all
+      - run: nix build -L --no-link --print-out-paths .#bsc-ci.all
-  build:cross:
-    runs-on: native
-    steps:
-      - uses: https://gitea.com/ScMi1/checkout@v1.4
-      - run: nix build -L --no-link --print-out-paths .#bsc.ci.cross

doc/maintainers.md

@@ -1,30 +0,0 @@
-# Maintainers
-
-## Role of a maintainer
-The responsibilities of maintainers are quite lax, and similar in spirit to
-[nixpkgs' maintainers][1]:
-
-    The main responsibility of a maintainer is to keep the packages they
-    maintain in a functioning state, and keep up with updates. In order to do
-    that, they are empowered to make decisions over the packages they maintain.
-
-    That being said, the maintainer is not alone in proposing changes to the
-    packages. Anybody (both bots and humans) can send PRs to bump or tweak the
-    package.
-
-In practice, this means that when updating or proposing changes to a package,
-we will notify maintainers by mentioning them in Gitea so they can test changes
-and give feedback.
-
-Since we do bi-yearly release cycles, there is no expectation from maintainers
-to update packages at each upstream release. Nevertheless, on each release cycle
-we may request help from maintainers when updating or testing their packages.
-
-## Becoming a maintainer
-
-
-You'll have to add yourself in the `maintainers.nix` list; your username should
-match your `bsc.es` email. Then you can add yourself to the `meta.maintainers`
-of any package you are interested in maintaining.
-
-[1]: [https://github.com/NixOS/nixpkgs/tree/nixos-25.05/maintainers]

flake.lock

@@ -1,5 +1,71 @@
 {
   "nodes": {
+    "agenix": {
+      "inputs": {
+        "darwin": "darwin",
+        "home-manager": "home-manager",
+        "nixpkgs": [
+          "nixpkgs"
+        ],
+        "systems": "systems"
+      },
+      "locked": {
+        "lastModified": 1750173260,
+        "narHash": "sha256-9P1FziAwl5+3edkfFcr5HeGtQUtrSdk/MksX39GieoA=",
+        "owner": "ryantm",
+        "repo": "agenix",
+        "rev": "531beac616433bac6f9e2a19feb8e99a22a66baf",
+        "type": "github"
+      },
+      "original": {
+        "owner": "ryantm",
+        "repo": "agenix",
+        "type": "github"
+      }
+    },
+    "darwin": {
+      "inputs": {
+        "nixpkgs": [
+          "agenix",
+          "nixpkgs"
+        ]
+      },
+      "locked": {
+        "lastModified": 1744478979,
+        "narHash": "sha256-dyN+teG9G82G+m+PX/aSAagkC+vUv0SgUw3XkPhQodQ=",
+        "owner": "lnl7",
+        "repo": "nix-darwin",
+        "rev": "43975d782b418ebf4969e9ccba82466728c2851b",
+        "type": "github"
+      },
+      "original": {
+        "owner": "lnl7",
+        "ref": "master",
+        "repo": "nix-darwin",
+        "type": "github"
+      }
+    },
+    "home-manager": {
+      "inputs": {
+        "nixpkgs": [
+          "agenix",
+          "nixpkgs"
+        ]
+      },
+      "locked": {
+        "lastModified": 1745494811,
+        "narHash": "sha256-YZCh2o9Ua1n9uCvrvi5pRxtuVNml8X2a03qIFfRKpFs=",
+        "owner": "nix-community",
+        "repo": "home-manager",
+        "rev": "abfad3d2958c9e6300a883bd443512c55dfeb1be",
+        "type": "github"
+      },
+      "original": {
+        "owner": "nix-community",
+        "repo": "home-manager",
+        "type": "github"
+      }
+    },
     "nixpkgs": {
       "locked": {
         "lastModified": 1752436162,
@@ -18,8 +84,24 @@
     },
     "root": {
       "inputs": {
+        "agenix": "agenix",
         "nixpkgs": "nixpkgs"
       }
+    },
+    "systems": {
+      "locked": {
+        "lastModified": 1681028828,
+        "narHash": "sha256-Vy1rq5AaRuLzOxct8nz4T6wlgyUR7zLU309k9mBC768=",
+        "owner": "nix-systems",
+        "repo": "default",
+        "rev": "da67096a3b9bf56a91d16901293e51ba5b49a27e",
+        "type": "github"
+      },
+      "original": {
+        "owner": "nix-systems",
+        "repo": "default",
+        "type": "github"
+      }
     }
   },
   "root": "root",

flake.nix

@@ -1,13 +1,15 @@
 {
   inputs = {
     nixpkgs.url = "github:NixOS/nixpkgs/nixos-25.05";
+    agenix.url = "github:ryantm/agenix";
+    agenix.inputs.nixpkgs.follows = "nixpkgs";
   };
 
-  outputs = { self, nixpkgs, ... }:
+  outputs = { self, nixpkgs, agenix, ... }:
 let
   mkConf = name: nixpkgs.lib.nixosSystem {
     system = "x86_64-linux";
-    specialArgs = { inherit nixpkgs; theFlake = self; };
+    specialArgs = { inherit nixpkgs agenix; theFlake = self; };
     modules = [ "${self.outPath}/m/${name}/configuration.nix" ];
   };
   # For now we only support x86
@@ -40,13 +42,11 @@ in
     # full nixpkgs with our overlay applied
     legacyPackages.${system} = pkgs;
 
-    hydraJobs = self.legacyPackages.${system}.bsc.hydraJobs;
+    hydraJobs = {
+      inherit (self.legacyPackages.${system}.bsc-ci) tests pkgs cross;
+    };
 
     # propagate nixpkgs lib, so we can do bscpkgs.lib
-    lib = nixpkgs.lib // {
+    inherit (nixpkgs) lib;
-      maintainers = nixpkgs.lib.maintainers // {
-        bsc = import ./pkgs/maintainers.nix;
-      };
-    };
   };
 }

m/common/base.nix

@@ -11,7 +11,6 @@
     ./base/hw.nix
     ./base/net.nix
     ./base/nix.nix
-    ./base/sys-devices.nix
     ./base/ntp.nix
     ./base/rev.nix
     ./base/ssh.nix

m/common/base/agenix.nix

@@ -1,8 +1,9 @@
-{ pkgs, ... }:
+{ agenix, ... }:
 
 {
-  imports = [ ../../module/agenix.nix ];
+  imports = [ agenix.nixosModules.default ];
 
-  # Add agenix to system packages
+  environment.systemPackages = [
-  environment.systemPackages = [ pkgs.agenix ];
+    agenix.packages.x86_64-linux.default
+  ];
 }

m/common/base/env.nix

@@ -5,8 +5,8 @@
     vim wget git htop tmux pciutils tcpdump ripgrep nix-index nixos-option
     nix-diff ipmitool freeipmi ethtool lm_sensors cmake gnumake file tree
     ncdu config.boot.kernelPackages.perf ldns pv
-    # From jungle overlay
+    # From bsckgs overlay
-    osumb nixgen
+    osumb
   ];
 
   programs.direnv.enable = true;

m/common/base/sys-devices.nix

@@ -1,9 +0,0 @@
-{
-  nix.settings.system-features = [ "sys-devices" ];
-
-  programs.nix-required-mounts.enable = true;
-  programs.nix-required-mounts.allowedPatterns.sys-devices.paths = [
-    "/sys/devices/system/cpu"
-    "/sys/devices/system/node"
-  ];
-}

m/common/base/users.nix

@@ -180,19 +180,6 @@
           "ssh-ed25519 AAAAC3NzaC1lZDI1NTE5AAAAIFmMqKqPg4uocNOr3O41kLbZMOMJn3m2ZdN1JvTR96z3 bsccns@arnau-bsc"
         ];
       };
-
-      aaguirre = {
-        uid = 9655;
-        isNormalUser = true;
-        home = "/home/Computational/aaguirre";
-        description = "Alejandro Aguirre";
-        group = "Computational";
-        hosts = [ "apex" "hut" ];
-        hashedPassword = "$6$TXRXQT6jjBvxkxU6$E.sh5KspAm1qeG5Ct7OPHpo8REmbGDwjFGvqeGgTVz3GASGOAnPL7UMZsMAsAKBoahOw.v8LNno6XGrTEPzZH1";
-        openssh.authorizedKeys.keys = [
-          "ssh-ed25519 AAAAC3NzaC1lZDI1NTE5AAAAIOlRX7ZCnqtUJYCxKgWmgSrFCYuA2LHY96rVwqxXPl86 aaguirre@BSC-8488184117"
-        ];
-      };
     };
 
     groups = {

m/hut/configuration.nix

@@ -17,7 +17,6 @@
     ./postgresql.nix
     ./nginx.nix
     ./p.nix
-    ./ompss2-timer.nix
     #./pxe.nix
   ];
 

m/hut/gitea.nix

@@ -29,9 +29,6 @@
     };
   };
 
-  # Allow gitea user to send mail
-  users.users.gitea.extraGroups = [ "mail-robot" ];
-
   services.gitea-actions-runner.instances = {
     runrun = {
       enable = true;

m/hut/msmtp.nix

@@ -1,11 +1,8 @@
 { config, lib, ... }:
 {
-  # Robot user that can see the password to send mail from jungle-robot
-  users.groups.mail-robot = {};
-
   age.secrets.jungleRobotPassword = {
     file = ../../secrets/jungle-robot-password.age;
-    group = "mail-robot";
+    group = "gitea";
     mode = "440";
   };
 

m/hut/nginx.nix

@@ -4,8 +4,8 @@ let
     name = "jungle-web";
     src = pkgs.fetchgit {
       url = "https://jungle.bsc.es/git/rarias/jungle-website.git";
-      rev = "52abaf4d71652a9ef77a0b098db14ca33bffff4c";
+      rev = "739bf0175a7f05380fe7ad7023ff1d60db1710e1";
-      hash = "sha256-/ul9GazbOrOkmlvSgDz/+2W+V+ir5725Y7mVLc3rb0M=";
+      hash = "sha256-ea5DzhYTzZ9TmqD+x95rdNdLbxPnBluqlYH2NmBYmc4=";
     };
     buildInputs = [ pkgs.hugo ];
     buildPhase = ''

m/hut/ompss2-timer.nix

@@ -1,85 +0,0 @@
-{ config, pkgs, ... }:
-{
-  systemd.timers = {
-    "ompss2-closing" = {
-      wantedBy = [ "timers.target" ];
-      timerConfig = {
-        Unit = "ompss2-closing.service";
-        OnCalendar = [ "*-03-15 07:00:00" "*-09-15 07:00:00"];
-      };
-    };
-    "ompss2-freeze" = {
-      wantedBy = [ "timers.target" ];
-      timerConfig = {
-        Unit = "ompss2-freeze.service";
-        OnCalendar = [ "*-04-15 07:00:00" "*-10-15 07:00:00" ];
-      };
-    };
-    "ompss2-release" = {
-      wantedBy = [ "timers.target" ];
-      timerConfig = {
-        Unit = "ompss2-release.service";
-        OnCalendar = [ "*-05-15 07:00:00" "*-11-15 07:00:00" ];
-      };
-    };
-  };
-
-  systemd.services =
-  let
-    closing = pkgs.writeText "closing.txt"
-    ''
-      Subject: OmpSs-2 release enters closing period
-
-      Hi,
-
-      You have one month to merge the remaining features for the next OmpSs-2
-      release. Please, identify what needs to be merged and discuss it in the next
-      OmpSs-2 meeting.
-
-      Thanks!,
-      Jungle robot
-    '';
-    freeze = pkgs.writeText "freeze.txt"
-    ''
-      Subject: OmpSs-2 release enters freeze period
-
-      Hi,
-
-      The period to introduce new features or breaking changes is over, only bug
-      fixes are allowed now. During this time, please prepare the release notes
-      to be included in the next OmpSs-2 release.
-
-      Thanks!,
-      Jungle robot
-    '';
-    release = pkgs.writeText "release.txt"
-    ''
-      Subject: OmpSs-2 release now
-
-      Hi,
-
-      The period to introduce bug fixes is now over. Please, proceed to do the
-      OmpSs-2 release.
-
-      Thanks!,
-      Jungle robot
-    '';
-    mkServ = name: mail: {
-      "ompss2-${name}" = {
-        script = ''
-          set -eu
-          set -o pipefail
-          cat ${mail} | ${config.security.wrapperDir}/sendmail star@bsc.es
-        '';
-        serviceConfig = {
-          Type = "oneshot";
-          DynamicUser = true;
-          Group = "mail-robot";
-        };
-      };
-    };
-  in
-    (mkServ "closing" closing) //
-    (mkServ "freeze" freeze) //
-    (mkServ "release" release);
-}

m/module/agenix.nix

@@ -1,357 +0,0 @@
-{
-  config,
-  options,
-  lib,
-  pkgs,
-  ...
-}:
-with lib;
-let
-  cfg = config.age;
-
-  isDarwin = lib.attrsets.hasAttrByPath [ "environment" "darwinConfig" ] options;
-
-  ageBin = config.age.ageBin;
-
-  users = config.users.users;
-
-  sysusersEnabled =
-    if isDarwin then
-      false
-    else
-      options.systemd ? sysusers && (config.systemd.sysusers.enable || config.services.userborn.enable);
-
-  mountCommand =
-    if isDarwin then
-      ''
-        if ! diskutil info "${cfg.secretsMountPoint}" &> /dev/null; then
-            num_sectors=1048576
-            dev=$(hdiutil attach -nomount ram://"$num_sectors" | sed 's/[[:space:]]*$//')
-            newfs_hfs -v agenix "$dev"
-            mount -t hfs -o nobrowse,nodev,nosuid,-m=0751 "$dev" "${cfg.secretsMountPoint}"
-        fi
-      ''
-    else
-      ''
-        grep -q "${cfg.secretsMountPoint} ramfs" /proc/mounts ||
-          mount -t ramfs none "${cfg.secretsMountPoint}" -o nodev,nosuid,mode=0751
-      '';
-  newGeneration = ''
-    _agenix_generation="$(basename "$(readlink ${cfg.secretsDir})" || echo 0)"
-    (( ++_agenix_generation ))
-    echo "[agenix] creating new generation in ${cfg.secretsMountPoint}/$_agenix_generation"
-    mkdir -p "${cfg.secretsMountPoint}"
-    chmod 0751 "${cfg.secretsMountPoint}"
-    ${mountCommand}
-    mkdir -p "${cfg.secretsMountPoint}/$_agenix_generation"
-    chmod 0751 "${cfg.secretsMountPoint}/$_agenix_generation"
-  '';
-
-  chownGroup = if isDarwin then "admin" else "keys";
-  # chown the secrets mountpoint and the current generation to the keys group
-  # instead of leaving it root:root.
-  chownMountPoint = ''
-    chown :${chownGroup} "${cfg.secretsMountPoint}" "${cfg.secretsMountPoint}/$_agenix_generation"
-  '';
-
-  setTruePath = secretType: ''
-    ${
-      if secretType.symlink then
-        ''
-          _truePath="${cfg.secretsMountPoint}/$_agenix_generation/${secretType.name}"
-        ''
-      else
-        ''
-          _truePath="${secretType.path}"
-        ''
-    }
-  '';
-
-  installSecret = secretType: ''
-    ${setTruePath secretType}
-    echo "decrypting '${secretType.file}' to '$_truePath'..."
-    TMP_FILE="$_truePath.tmp"
-
-    IDENTITIES=()
-    for identity in ${toString cfg.identityPaths}; do
-      test -r "$identity" || continue
-      test -s "$identity" || continue
-      IDENTITIES+=(-i)
-      IDENTITIES+=("$identity")
-    done
-
-    test "''${#IDENTITIES[@]}" -eq 0 && echo "[agenix] WARNING: no readable identities found!"
-
-    mkdir -p "$(dirname "$_truePath")"
-    [ "${secretType.path}" != "${cfg.secretsDir}/${secretType.name}" ] && mkdir -p "$(dirname "${secretType.path}")"
-    (
-      umask u=r,g=,o=
-      test -f "${secretType.file}" || echo '[agenix] WARNING: encrypted file ${secretType.file} does not exist!'
-      test -d "$(dirname "$TMP_FILE")" || echo "[agenix] WARNING: $(dirname "$TMP_FILE") does not exist!"
-      LANG=${
-        config.i18n.defaultLocale or "C"
-      } ${ageBin} --decrypt "''${IDENTITIES[@]}" -o "$TMP_FILE" "${secretType.file}"
-    )
-    chmod ${secretType.mode} "$TMP_FILE"
-    mv -f "$TMP_FILE" "$_truePath"
-
-    ${optionalString secretType.symlink ''
-      [ "${secretType.path}" != "${cfg.secretsDir}/${secretType.name}" ] && ln -sfT "${cfg.secretsDir}/${secretType.name}" "${secretType.path}"
-    ''}
-  '';
-
-  testIdentities = map (path: ''
-    test -f ${path} || echo '[agenix] WARNING: config.age.identityPaths entry ${path} not present!'
-  '') cfg.identityPaths;
-
-  cleanupAndLink = ''
-    _agenix_generation="$(basename "$(readlink ${cfg.secretsDir})" || echo 0)"
-    (( ++_agenix_generation ))
-    echo "[agenix] symlinking new secrets to ${cfg.secretsDir} (generation $_agenix_generation)..."
-    ln -sfT "${cfg.secretsMountPoint}/$_agenix_generation" ${cfg.secretsDir}
-
-    (( _agenix_generation > 1 )) && {
-    echo "[agenix] removing old secrets (generation $(( _agenix_generation - 1 )))..."
-    rm -rf "${cfg.secretsMountPoint}/$(( _agenix_generation - 1 ))"
-    }
-  '';
-
-  installSecrets = builtins.concatStringsSep "\n" (
-    [ "echo '[agenix] decrypting secrets...'" ]
-    ++ testIdentities
-    ++ (map installSecret (builtins.attrValues cfg.secrets))
-    ++ [ cleanupAndLink ]
-  );
-
-  chownSecret = secretType: ''
-    ${setTruePath secretType}
-    chown ${secretType.owner}:${secretType.group} "$_truePath"
-  '';
-
-  chownSecrets = builtins.concatStringsSep "\n" (
-    [ "echo '[agenix] chowning...'" ]
-    ++ [ chownMountPoint ]
-    ++ (map chownSecret (builtins.attrValues cfg.secrets))
-  );
-
-  secretType = types.submodule (
-    { config, ... }:
-    {
-      options = {
-        name = mkOption {
-          type = types.str;
-          default = config._module.args.name;
-          defaultText = literalExpression "config._module.args.name";
-          description = ''
-            Name of the file used in {option}`age.secretsDir`
-          '';
-        };
-        file = mkOption {
-          type = types.path;
-          description = ''
-            Age file the secret is loaded from.
-          '';
-        };
-        path = mkOption {
-          type = types.str;
-          default = "${cfg.secretsDir}/${config.name}";
-          defaultText = literalExpression ''
-            "''${cfg.secretsDir}/''${config.name}"
-          '';
-          description = ''
-            Path where the decrypted secret is installed.
-          '';
-        };
-        mode = mkOption {
-          type = types.str;
-          default = "0400";
-          description = ''
-            Permissions mode of the decrypted secret in a format understood by chmod.
-          '';
-        };
-        owner = mkOption {
-          type = types.str;
-          default = "0";
-          description = ''
-            User of the decrypted secret.
-          '';
-        };
-        group = mkOption {
-          type = types.str;
-          default = users.${config.owner}.group or "0";
-          defaultText = literalExpression ''
-            users.''${config.owner}.group or "0"
-          '';
-          description = ''
-            Group of the decrypted secret.
-          '';
-        };
-        symlink = mkEnableOption "symlinking secrets to their destination" // {
-          default = true;
-        };
-      };
-    }
-  );
-in
-{
-  imports = [
-    (mkRenamedOptionModule [ "age" "sshKeyPaths" ] [ "age" "identityPaths" ])
-  ];
-
-  options.age = {
-    ageBin = mkOption {
-      type = types.str;
-      default = "${pkgs.age}/bin/age";
-      defaultText = literalExpression ''
-        "''${pkgs.age}/bin/age"
-      '';
-      description = ''
-        The age executable to use.
-      '';
-    };
-    secrets = mkOption {
-      type = types.attrsOf secretType;
-      default = { };
-      description = ''
-        Attrset of secrets.
-      '';
-    };
-    secretsDir = mkOption {
-      type = types.path;
-      default = "/run/agenix";
-      description = ''
-        Folder where secrets are symlinked to
-      '';
-    };
-    secretsMountPoint = mkOption {
-      type =
-        types.addCheck types.str (
-          s:
-          (builtins.match "[ \t\n]*" s) == null # non-empty
-          && (builtins.match ".+/" s) == null
-        ) # without trailing slash
-        // {
-          description = "${types.str.description} (with check: non-empty without trailing slash)";
-        };
-      default = "/run/agenix.d";
-      description = ''
-        Where secrets are created before they are symlinked to {option}`age.secretsDir`
-      '';
-    };
-    identityPaths = mkOption {
-      type = types.listOf types.path;
-      default =
-        if isDarwin then
-          [
-            "/etc/ssh/ssh_host_ed25519_key"
-            "/etc/ssh/ssh_host_rsa_key"
-          ]
-        else if (config.services.openssh.enable or false) then
-          map (e: e.path) (
-            lib.filter (e: e.type == "rsa" || e.type == "ed25519") config.services.openssh.hostKeys
-          )
-        else
-          [ ];
-      defaultText = literalExpression ''
-        if isDarwin
-        then [
-          "/etc/ssh/ssh_host_ed25519_key"
-          "/etc/ssh/ssh_host_rsa_key"
-        ]
-        else if (config.services.openssh.enable or false)
-        then map (e: e.path) (lib.filter (e: e.type == "rsa" || e.type == "ed25519") config.services.openssh.hostKeys)
-        else [];
-      '';
-      description = ''
-        Path to SSH keys to be used as identities in age decryption.
-      '';
-    };
-  };
-
-  config = mkIf (cfg.secrets != { }) (mkMerge [
-    {
-      assertions = [
-        {
-          assertion = cfg.identityPaths != [ ];
-          message = "age.identityPaths must be set, for example by enabling openssh.";
-        }
-      ];
-    }
-    (optionalAttrs (!isDarwin) {
-      # When using sysusers we no longer be started as an activation script
-      # because those are started in initrd while sysusers is started later.
-      systemd.services.agenix-install-secrets = mkIf sysusersEnabled {
-        wantedBy = [ "sysinit.target" ];
-        after = [ "systemd-sysusers.service" ];
-        unitConfig.DefaultDependencies = "no";
-
-        path = [ pkgs.mount ];
-        serviceConfig = {
-          Type = "oneshot";
-          ExecStart = pkgs.writeShellScript "agenix-install" (concatLines [
-            newGeneration
-            installSecrets
-            chownSecrets
-          ]);
-          RemainAfterExit = true;
-        };
-      };
-
-      # Create a new directory full of secrets for symlinking (this helps
-      # ensure removed secrets are actually removed, or at least become
-      # invalid symlinks).
-      system.activationScripts = mkIf (!sysusersEnabled) {
-        agenixNewGeneration = {
-          text = newGeneration;
-          deps = [
-            "specialfs"
-          ];
-        };
-
-        agenixInstall = {
-          text = installSecrets;
-          deps = [
-            "agenixNewGeneration"
-            "specialfs"
-          ];
-        };
-
-        # So user passwords can be encrypted.
-        users.deps = [ "agenixInstall" ];
-
-        # Change ownership and group after users and groups are made.
-        agenixChown = {
-          text = chownSecrets;
-          deps = [
-            "users"
-            "groups"
-          ];
-        };
-
-        # So other activation scripts can depend on agenix being done.
-        agenix = {
-          text = "";
-          deps = [ "agenixChown" ];
-        };
-      };
-    })
-
-    (optionalAttrs isDarwin {
-      launchd.daemons.activate-agenix = {
-        script = ''
-          set -e
-          set -o pipefail
-          export PATH="${pkgs.gnugrep}/bin:${pkgs.coreutils}/bin:@out@/sw/bin:/usr/bin:/bin:/usr/sbin:/sbin"
-          ${newGeneration}
-          ${installSecrets}
-          ${chownSecrets}
-          exit 0
-        '';
-        serviceConfig = {
-          RunAtLoad = true;
-          KeepAlive.SuccessfulExit = false;
-        };
-      };
-    })
-  ]);
-}

m/module/slurm-common.nix

@@ -86,7 +86,9 @@ in {
       # when a task runs (srun) so we can ssh early.
       PrologFlags=Alloc,Contain,X11
 
-      LaunchParameters=use_interactive_step
+      # LaunchParameters=ulimit_pam_adopt will set RLIMIT_RSS in processes
+      # adopted by the external step, similar to tasks running in regular steps
+      # LaunchParameters=ulimit_pam_adopt
       SlurmdDebug=debug5
       #DebugFlags=Protocol,Cgroup
     '';

m/tent/nginx.nix

@@ -4,8 +4,8 @@ let
     name = "jungle-web";
     src = pkgs.fetchgit {
       url = "https://jungle.bsc.es/git/rarias/jungle-website.git";
-      rev = "52abaf4d71652a9ef77a0b098db14ca33bffff4c";
+      rev = "739bf0175a7f05380fe7ad7023ff1d60db1710e1";
-      hash = "sha256-/ul9GazbOrOkmlvSgDz/+2W+V+ir5725Y7mVLc3rb0M=";
+      hash = "sha256-ea5DzhYTzZ9TmqD+x95rdNdLbxPnBluqlYH2NmBYmc4=";
     };
     buildInputs = [ pkgs.hugo ];
     buildPhase = ''

overlay.nix

@@ -7,7 +7,6 @@ let
   callPackage = final.callPackage;
 
   bscPkgs = {
-    agenix = prev.callPackage ./pkgs/agenix/default.nix { };
     amd-uprof = prev.callPackage ./pkgs/amd-uprof/default.nix { };
     bench6 = callPackage ./pkgs/bench6/default.nix { };
     bigotes = callPackage ./pkgs/bigotes/default.nix { };
@@ -19,7 +18,11 @@ let
     cudainfo = prev.callPackage ./pkgs/cudainfo/default.nix { };
     #extrae = callPackage ./pkgs/extrae/default.nix { }; # Broken and outdated
     gpi-2 = callPackage ./pkgs/gpi-2/default.nix { };
+    intel-apt = callPackage ./pkgs/intel-oneapi/packages.nix { };
     intelPackages_2023 = callPackage ./pkgs/intel-oneapi/2023.nix { };
+    intelPackages_2024 = final.intel-apt.hpckit_2024;
+    intelPackages_2025 = final.intel-apt.hpckit_2025;
+    intelPackages = final.intelPackages_2025;
     jemallocNanos6 = callPackage ./pkgs/nanos6/jemalloc.nix { };
     # FIXME: Extend this to all linuxPackages variants. Open problem, see:
     # https://discourse.nixos.org/t/whats-the-right-way-to-make-a-custom-kernel-module-available/4636
@@ -37,12 +40,12 @@ let
     nanos6 = callPackage ./pkgs/nanos6/default.nix { };
     nanos6Debug = final.nanos6.override { enableDebug = true; };
     nixtools = callPackage ./pkgs/nixtools/default.nix { };
-    nixgen = callPackage ./pkgs/nixgen/default.nix { };
     # Broken because of pkgsStatic.libcap
     # See: https://github.com/NixOS/nixpkgs/pull/268791
     #nix-wrap = callPackage ./pkgs/nix-wrap/default.nix { };
     nodes = callPackage ./pkgs/nodes/default.nix { };
     nosv = callPackage ./pkgs/nosv/default.nix { };
+    oneMath = callPackage ./pkgs/onemath/default.nix { };
     openmp = callPackage ./pkgs/llvm-ompss2/openmp.nix { monorepoSrc = final.clangOmpss2Unwrapped.src; version = final.clangOmpss2Unwrapped.version; };
     openmpv = final.openmp.override { enableNosv = true; enableOvni = true; };
     osumb = callPackage ./pkgs/osu/default.nix { };
@@ -52,7 +55,6 @@ let
     prometheus-slurm-exporter = prev.callPackage ./pkgs/slurm-exporter/default.nix { };
     #pscom = callPackage ./pkgs/parastation/pscom.nix { }; # Unmaintaned
     #psmpi = callPackage ./pkgs/parastation/psmpi.nix { }; # Unmaintaned
-    slurm = import ./pkgs/slurm/default.nix { slurm = prev.slurm; };
     sonar = callPackage ./pkgs/sonar/default.nix { };
     stdenvClangOmpss2 = final.stdenv.override { cc = final.clangOmpss2; allowedRequisites = null; };
     stdenvClangOmpss2Nanos6 = final.stdenv.override { cc = final.clangOmpss2Nanos6; allowedRequisites = null; };
@@ -60,15 +62,19 @@ let
     stdenvClangOmpss2NodesOmpv = final.stdenv.override { cc = final.clangOmpss2NodesOmpv; allowedRequisites = null; };
     tagaspi = callPackage ./pkgs/tagaspi/default.nix { };
     tampi = callPackage ./pkgs/tampi/default.nix { };
+    tasycl = callPackage ./pkgs/tasycl/default.nix { };
+    tasycl-acpp = callPackage ./pkgs/tasycl/default.nix { useIntel = false; };
     upc-qaire-exporter = prev.callPackage ./pkgs/upc-qaire-exporter/default.nix { };
     wxparaver = callPackage ./pkgs/paraver/default.nix { };
   };
 
   tests = rec {
-    hwloc = callPackage ./test/bugs/hwloc.nix { };
+    #hwloc = callPackage ./test/bugs/hwloc.nix { }; # Broken, no /sys
     #sigsegv = callPackage ./test/reproducers/sigsegv.nix { };
     hello-c = callPackage ./test/compilers/hello-c.nix { };
     hello-cpp = callPackage ./test/compilers/hello-cpp.nix { };
+    hello-sycl = callPackage ./test/compilers/hello-sycl.nix { };
+    hello-syclompss = callPackage ./test/compilers/icpx-ompss2.nix { };
     lto = callPackage ./test/compilers/lto.nix { };
     asan = callPackage ./test/compilers/asan.nix { };
     intel2023-icx-c   = hello-c.override   { stdenv = final.intelPackages_2023.stdenv; };
@@ -78,6 +84,13 @@ let
     intel2023-ifort   = callPackage ./test/compilers/hello-f.nix {
       stdenv = final.intelPackages_2023.stdenv-ifort;
     };
+    intel2024-icx-c   = hello-c.override   { stdenv = final.intelPackages_2024.stdenv; };
+    intel2025-icx-c   = hello-c.override   { stdenv = final.intelPackages_2025.stdenv; };
+    intel2024-icx-cpp = hello-cpp.override { stdenv = final.intelPackages_2024.stdenv; };
+    intel2025-icx-cpp = hello-cpp.override { stdenv = final.intelPackages_2025.stdenv; };
+    # intel2023-sycl    = hello-sycl.override { intelPackages = final.intelPackages_2023; }; # broken
+    intel2024-sycl    = hello-sycl.override { intelPackages = final.intelPackages_2024; };
+    intel2025-sycl    = hello-sycl.override { intelPackages = final.intelPackages_2025; };
     clangOmpss2-lto   = lto.override       { stdenv = final.stdenvClangOmpss2Nanos6; };
     clangOmpss2-asan  = asan.override      { stdenv = final.stdenvClangOmpss2Nanos6; };
     clangOmpss2-task  = callPackage ./test/compilers/ompss2.nix {
@@ -97,18 +110,12 @@ let
     };
   };
 
-  # For now, only build toplevel packages in CI/Hydra
+  pkgs = filterAttrs (_: isDerivation) bscPkgs;
-  pkgsTopLevel = filterAttrs (_: isDerivation) bscPkgs;
 
-  # Native build in that platform doesn't imply cross build works
+  crossTargets = [ "riscv64" ];
-  canCrossCompile = platform: pkg:
+  cross = prev.lib.genAttrs crossTargets (target:
-    (isDerivation pkg) &&
+    final.pkgsCross.${target}.bsc-ci.pkgs
-    # Must be defined explicitly
+  );
-    (pkg.meta.cross or false) &&
-    (meta.availableOn platform pkg);
-
-  # For now only RISC-V
-  crossSet = { riscv64 = final.pkgsCross.riscv64.bsc.pkgsTopLevel; };
 
   buildList = name: paths:
     final.runCommandLocal name { } ''
@@ -122,38 +129,22 @@ let
       printf '%s\n' $deps >$out
     '';
 
-  pkgsList = buildList "ci-pkgs" (builtins.attrValues pkgsTopLevel);
+  crossList = builtins.mapAttrs (t: v: buildList t (builtins.attrValues v)) cross;
-  testsList = buildList "ci-tests" (collect isDerivation tests);
+
-  allList = buildList' "ci-all" [ pkgsList testsList ];
+  pkgsList = buildList "ci-pkgs" (builtins.attrValues pkgs);
-  # For now only RISC-V
+  testList = buildList "ci-tests" (collect isDerivation tests);
-  crossList = buildList "ci-cross"
+
-    (filter
+  all = buildList' "ci-all" [ pkgsList testList ];
-      (canCrossCompile final.pkgsCross.riscv64.stdenv.hostPlatform)
-        (builtins.attrValues crossSet.riscv64));
 
 in bscPkgs // {
-
+  # Prevent accidental usage of bsc attribute
-  lib = prev.lib // {
+  bsc = throw "the bsc attribute is deprecated, packages are now in the root";
-    maintainers = prev.lib.maintainers // {
-      bsc = import ./pkgs/maintainers.nix;
-    };
-  };
-
-  # Prevent accidental usage of bsc-ci attribute
-  bsc-ci = throw "the bsc-ci attribute is deprecated, use bsc.ci";
 
   # Internal for our CI tests
-  bsc = {
+  bsc-ci = {
-    # CI targets for nix build
+    inherit pkgs pkgsList;
-    ci = { pkgs = pkgsList; tests = testsList; all = allList; cross = crossList; };
+    inherit tests testList;
-
+    inherit cross crossList;
-    # Direct access to package sets
+    inherit all;
-    tests = tests;
-    pkgs = bscPkgs;
-    pkgsTopLevel = pkgsTopLevel;
-    cross = crossSet;
-
-    # Hydra uses attribute sets of pkgs
-    hydraJobs = { tests = tests; pkgs = pkgsTopLevel; cross = crossSet; };
   };
 }

pkgs/agenix/agenix.sh

@@ -1,212 +0,0 @@
-#!/usr/bin/env bash
-set -Eeuo pipefail
-
-PACKAGE="agenix"
-
-function show_help () {
-  echo "$PACKAGE - edit and rekey age secret files"
-  echo " "
-  echo "$PACKAGE -e FILE [-i PRIVATE_KEY]"
-  echo "$PACKAGE -r [-i PRIVATE_KEY]"
-  echo ' '
-  echo 'options:'
-  echo '-h, --help                show help'
-  # shellcheck disable=SC2016
-  echo '-e, --edit FILE           edits FILE using $EDITOR'
-  echo '-r, --rekey               re-encrypts all secrets with specified recipients'
-  echo '-d, --decrypt FILE        decrypts FILE to STDOUT'
-  echo '-i, --identity            identity to use when decrypting'
-  echo '-v, --verbose             verbose output'
-  echo ' '
-  echo 'FILE an age-encrypted file'
-  echo ' '
-  echo 'PRIVATE_KEY a path to a private SSH key used to decrypt file'
-  echo ' '
-  echo 'EDITOR environment variable of editor to use when editing FILE'
-  echo ' '
-  echo 'If STDIN is not interactive, EDITOR will be set to "cp /dev/stdin"'
-  echo ' '
-  echo 'RULES environment variable with path to Nix file specifying recipient public keys.'
-  echo "Defaults to './secrets.nix'"
-  echo ' '
-  echo "agenix version: @version@"
-  echo "age binary path: @ageBin@"
-  echo "age version: $(@ageBin@ --version)"
-}
-
-function warn() {
-  printf '%s\n' "$*" >&2
-}
-
-function err() {
-  warn "$*"
-  exit 1
-}
-
-test $# -eq 0 && (show_help && exit 1)
-
-REKEY=0
-DECRYPT_ONLY=0
-DEFAULT_DECRYPT=(--decrypt)
-
-while test $# -gt 0; do
-  case "$1" in
-    -h|--help)
-      show_help
-      exit 0
-      ;;
-    -e|--edit)
-      shift
-      if test $# -gt 0; then
-        export FILE=$1
-      else
-        echo "no FILE specified"
-        exit 1
-      fi
-      shift
-      ;;
-    -i|--identity)
-      shift
-      if test $# -gt 0; then
-        DEFAULT_DECRYPT+=(--identity "$1")
-      else
-        echo "no PRIVATE_KEY specified"
-        exit 1
-      fi
-      shift
-      ;;
-    -r|--rekey)
-      shift
-      REKEY=1
-      ;;
-    -d|--decrypt)
-      shift
-      DECRYPT_ONLY=1
-      if test $# -gt 0; then
-        export FILE=$1
-      else
-        echo "no FILE specified"
-        exit 1
-      fi
-      shift
-      ;;
-    -v|--verbose)
-      shift
-      set -x
-      ;;
-    *)
-      show_help
-      exit 1
-      ;;
-  esac
-done
-
-RULES=${RULES:-./secrets.nix}
-function cleanup {
-    if [ -n "${CLEARTEXT_DIR+x}" ]
-    then
-        rm -rf -- "$CLEARTEXT_DIR"
-    fi
-    if [ -n "${REENCRYPTED_DIR+x}" ]
-    then
-        rm -rf -- "$REENCRYPTED_DIR"
-    fi
-}
-trap "cleanup" 0 2 3 15
-
-function keys {
-    (@nixInstantiate@ --json --eval --strict -E "(let rules = import $RULES; in rules.\"$1\".publicKeys)" | @jqBin@ -r .[]) || exit 1
-}
-
-function armor {
-    (@nixInstantiate@ --json --eval --strict -E "(let rules = import $RULES; in (builtins.hasAttr \"armor\" rules.\"$1\" && rules.\"$1\".armor))") || exit 1
-}
-
-function decrypt {
-    FILE=$1
-    KEYS=$2
-    if [ -z "$KEYS" ]
-    then
-        err "There is no rule for $FILE in $RULES."
-    fi
-
-    if [ -f "$FILE" ]
-    then
-        DECRYPT=("${DEFAULT_DECRYPT[@]}")
-        if [[ "${DECRYPT[*]}" != *"--identity"* ]]; then
-            if [ -f "$HOME/.ssh/id_rsa" ]; then
-                DECRYPT+=(--identity "$HOME/.ssh/id_rsa")
-            fi
-            if [ -f "$HOME/.ssh/id_ed25519" ]; then
-                DECRYPT+=(--identity "$HOME/.ssh/id_ed25519")
-            fi
-        fi
-        if [[ "${DECRYPT[*]}" != *"--identity"* ]]; then
-          err "No identity found to decrypt $FILE. Try adding an SSH key at $HOME/.ssh/id_rsa or $HOME/.ssh/id_ed25519 or using the --identity flag to specify a file."
-        fi
-
-        @ageBin@ "${DECRYPT[@]}" -- "$FILE" || exit 1
-    fi
-}
-
-function edit {
-    FILE=$1
-    KEYS=$(keys "$FILE") || exit 1
-    ARMOR=$(armor "$FILE") || exit 1
-
-    CLEARTEXT_DIR=$(@mktempBin@ -d)
-    CLEARTEXT_FILE="$CLEARTEXT_DIR/$(basename -- "$FILE")"
-    DEFAULT_DECRYPT+=(-o "$CLEARTEXT_FILE")
-
-    decrypt "$FILE" "$KEYS" || exit 1
-
-    [ ! -f "$CLEARTEXT_FILE" ] || cp -- "$CLEARTEXT_FILE" "$CLEARTEXT_FILE.before"
-
-    [ -t 0 ] || EDITOR='cp -- /dev/stdin'
-
-    $EDITOR "$CLEARTEXT_FILE"
-
-    if [ ! -f "$CLEARTEXT_FILE" ]
-    then
-      warn "$FILE wasn't created."
-      return
-    fi
-    [ -f "$FILE" ] && [ "$EDITOR" != ":" ] && @diffBin@ -q -- "$CLEARTEXT_FILE.before" "$CLEARTEXT_FILE" && warn "$FILE wasn't changed, skipping re-encryption." && return
-
-    ENCRYPT=()
-    if [[ "$ARMOR" == "true" ]]; then
-        ENCRYPT+=(--armor)
-    fi
-    while IFS= read -r key
-    do
-        if [ -n "$key" ]; then
-            ENCRYPT+=(--recipient "$key")
-        fi
-    done <<< "$KEYS"
-
-    REENCRYPTED_DIR=$(@mktempBin@ -d)
-    REENCRYPTED_FILE="$REENCRYPTED_DIR/$(basename -- "$FILE")"
-
-    ENCRYPT+=(-o "$REENCRYPTED_FILE")
-
-    @ageBin@ "${ENCRYPT[@]}" <"$CLEARTEXT_FILE" || exit 1
-
-    mkdir -p -- "$(dirname -- "$FILE")"
-
-    mv -f -- "$REENCRYPTED_FILE" "$FILE"
-}
-
-function rekey {
-    FILES=$( (@nixInstantiate@ --json --eval -E "(let rules = import $RULES; in builtins.attrNames rules)"  | @jqBin@ -r .[]) || exit 1)
-
-    for FILE in $FILES
-    do
-        warn "rekeying $FILE..."
-        EDITOR=: edit "$FILE"
-        cleanup
-    done
-}
-
-[ $REKEY -eq 1 ] && rekey && exit 0
-[ $DECRYPT_ONLY -eq 1 ] && DEFAULT_DECRYPT+=("-o" "-") && decrypt "${FILE}" "$(keys "$FILE")" && exit 0
-edit "$FILE" && cleanup && exit 0

pkgs/agenix/default.nix

@@ -1,66 +0,0 @@
-{
-  lib,
-  stdenv,
-  age,
-  jq,
-  nix,
-  mktemp,
-  diffutils,
-  replaceVars,
-  ageBin ? "${age}/bin/age",
-  shellcheck,
-}:
-let
-  bin = "${placeholder "out"}/bin/agenix";
-in
-stdenv.mkDerivation rec {
-  pname = "agenix";
-  version = "0.15.0";
-  src = replaceVars ./agenix.sh {
-    inherit ageBin version;
-    jqBin = "${jq}/bin/jq";
-    nixInstantiate = "${nix}/bin/nix-instantiate";
-    mktempBin = "${mktemp}/bin/mktemp";
-    diffBin = "${diffutils}/bin/diff";
-  };
-  dontUnpack = true;
-  doInstallCheck = true;
-  installCheckInputs = [ shellcheck ];
-  postInstallCheck = ''
-    shellcheck ${bin}
-    ${bin} -h | grep ${version}
-
-    test_tmp=$(mktemp -d 2>/dev/null || mktemp -d -t 'mytmpdir')
-    export HOME="$test_tmp/home"
-    export NIX_STORE_DIR="$test_tmp/nix/store"
-    export NIX_STATE_DIR="$test_tmp/nix/var"
-    mkdir -p "$HOME" "$NIX_STORE_DIR" "$NIX_STATE_DIR"
-    function cleanup {
-      rm -rf "$test_tmp"
-    }
-    trap "cleanup" 0 2 3 15
-
-    mkdir -p $HOME/.ssh
-    cp -r "${./example}" $HOME/secrets
-    chmod -R u+rw $HOME/secrets
-    (
-    umask u=rw,g=r,o=r
-    cp ${./example_keys/user1.pub} $HOME/.ssh/id_ed25519.pub
-    chown $UID $HOME/.ssh/id_ed25519.pub
-    )
-    (
-    umask u=rw,g=,o=
-    cp ${./example_keys/user1} $HOME/.ssh/id_ed25519
-    chown $UID $HOME/.ssh/id_ed25519
-    )
-
-    cd $HOME/secrets
-    test $(${bin} -d secret1.age) = "hello"
-  '';
-
-  installPhase = ''
-    install -D $src ${bin}
-  '';
-
-  meta.description = "age-encrypted secrets for NixOS";
-}

pkgs/agenix/example/-leading-hyphen-filename.age

@@ -1,7 +0,0 @@
-age-encryption.org/v1
--> ssh-ed25519 V3XmEA zirqdzZZ1E+sedBn7fbEHq4ntLEkokZ4GctarBBOHXY
-Rvs5YHaAUeCZyNwPedubPcHClWYIuXXWA5zadXPWY6w
--> ssh-ed25519 KLPP8w BVp4rDkOYSQyn8oVeHFeinSqW+pdVtxBF9+5VM1yORY
-bMwppAi8Nhz0328taU4AzUkTVyWtSLvFZG6c5W/Fs78
---- xCbqLhXAcOziO2wmbjTiSQfZvt5Rlsc4SCvF+iEzpQA
-ôKB£î/²ZÅÈrÙ%
¾à4¡´—Mq5×Ô_ÌÂÝ’‹†ã„Ò11ܨqM;& ¢‡LríÂÒføû”]>N

pkgs/agenix/example/armored-secret.age

@@ -1,7 +0,0 @@
------BEGIN AGE ENCRYPTED FILE-----
-YWdlLWVuY3J5cHRpb24ub3JnL3YxCi0+IHNzaC1lZDI1NTE5IFYzWG1FQSBpZkZW
-aFpLNnJxc0VUMHRmZ2dZS0pjMGVENnR3OHd5K0RiT1RjRUhibFZBCnN5UG5vUjA3
-SXpsNGtiVUw4T0tIVFo5Wkk5QS9NQlBndzVvektiQ0ozc0kKLS0tIGxyY1Q4dEZ1
-VGZEanJyTFNta2JNRmpZb2FnK2JyS1hSVml1UGdMNWZKQXMKYla+wTXcRedyZoEb
-LVWaSx49WoUTU0KBPJg9RArxaeC23GoCDzR/aM/1DvYU
------END AGE ENCRYPTED FILE-----

pkgs/agenix/example/passwordfile-user1.age

@@ -1,9 +0,0 @@
-age-encryption.org/v1
--> ssh-ed25519 KLPP8w s1DYZRlZuSsyhmZCF1lFB+E9vB8bZ/+ZhBRlx8nprwE
-nmYVCsVBrX2CFXXPU+D+bbkkIe/foofp+xoUrg9DHZw
--> ssh-ed25519 V3XmEA Pwv3oCwcY0DX8rY48UNfsj9RumWsn4dbgorYHCwObgI
-FKxRYkL3JHtJxUwymWDF0rAtJ33BivDI6IfPsfumM90
--> V'v(/u$-grease em/Vgf 2qDuk
-7I3iiQLPGi1COML9u/JeYkr7EqbSLoU
---- 57WJRigUGtmcObrssS3s4PvmR8wgh1AOC/ijJn1s3xI
-<EFBFBD>'K©Æ·Y&‘7GÆOÝòFj
±kÆXç«BnuJöê:9Ê(’ÙÏX¬#¼AíÄÞÃÚ§j’,ê_ÈþÝ?ÝZ“¥vœ¹V’96]oks~%£c	Îe^CÅ%JQ5€<H¢z}îCý,°pŒ¿*!W§§ÈA±º­Ò…dC¼K)¿¢-žy

pkgs/agenix/example/secret2.age

@@ -1,5 +0,0 @@
-age-encryption.org/v1
--> ssh-ed25519 V3XmEA OB4+1FbPhQ3r6iGksM7peWX5it8NClpXIq/o5nnP7GA
-FmHVUj+A5i5+bDFgySQskmlvynnosJiWUTJmBRiNA9I
---- tP+3mFVtd7ogVu1Lkboh55zoi5a77Ht08Uc/QuIviv4
-¤¬Xæ{”ïOŠ£èätMXxÔvÓª(¬IÁmyPÇï¸è+3²S3i

pkgs/agenix/example/secrets.nix

@@ -1,23 +0,0 @@
-let
-  user1 = "ssh-ed25519 AAAAC3NzaC1lZDI1NTE5AAAAIL0idNvgGiucWgup/mP78zyC23uFjYq0evcWdjGQUaBH";
-  system1 = "ssh-ed25519 AAAAC3NzaC1lZDI1NTE5AAAAIPJDyIr/FSz1cJdcoW69R+NrWzwGK/+3gJpqD1t8L2zE";
-in
-{
-  "secret1.age".publicKeys = [
-    user1
-    system1
-  ];
-  "secret2.age".publicKeys = [ user1 ];
-  "passwordfile-user1.age".publicKeys = [
-    user1
-    system1
-  ];
-  "-leading-hyphen-filename.age".publicKeys = [
-    user1
-    system1
-  ];
-  "armored-secret.age" = {
-    publicKeys = [ user1 ];
-    armor = true;
-  };
-}

pkgs/agenix/example_keys/system1

@@ -1,7 +0,0 @@
------BEGIN OPENSSH PRIVATE KEY-----
-b3BlbnNzaC1rZXktdjEAAAAABG5vbmUAAAAEbm9uZQAAAAAAAAABAAAAMwAAAAtzc2gtZW
-QyNTUxOQAAACDyQ8iK/xUs9XCXXKFuvUfja1s8Biv/t4Caag9bfC9sxAAAAJA3yvCWN8rw
-lgAAAAtzc2gtZWQyNTUxOQAAACDyQ8iK/xUs9XCXXKFuvUfja1s8Biv/t4Caag9bfC9sxA
-AAAEA+J2V6AG1NriAIvnNKRauIEh1JE9HSdhvKJ68a5Fm0w/JDyIr/FSz1cJdcoW69R+Nr
-WzwGK/+3gJpqD1t8L2zEAAAADHJ5YW50bUBob21lMQE=
------END OPENSSH PRIVATE KEY-----

pkgs/agenix/example_keys/system1.pub

@@ -1 +0,0 @@
-ssh-ed25519 AAAAC3NzaC1lZDI1NTE5AAAAIPJDyIr/FSz1cJdcoW69R+NrWzwGK/+3gJpqD1t8L2zE

pkgs/agenix/example_keys/user1

@@ -1,7 +0,0 @@
------BEGIN OPENSSH PRIVATE KEY-----
-b3BlbnNzaC1rZXktdjEAAAAABG5vbmUAAAAEbm9uZQAAAAAAAAABAAAAMwAAAAtzc2gtZW
-QyNTUxOQAAACC9InTb4BornFoLqf5j+/M8gtt7hY2KtHr3FnYxkFGgRwAAAJC2JJ8htiSf
-IQAAAAtzc2gtZWQyNTUxOQAAACC9InTb4BornFoLqf5j+/M8gtt7hY2KtHr3FnYxkFGgRw
-AAAEDxt5gC/s53IxiKAjfZJVCCcFIsdeERdIgbYhLO719+Kb0idNvgGiucWgup/mP78zyC
-23uFjYq0evcWdjGQUaBHAAAADHJ5YW50bUBob21lMQE=
------END OPENSSH PRIVATE KEY-----

pkgs/agenix/example_keys/user1.pub

@@ -1 +0,0 @@
-ssh-ed25519 AAAAC3NzaC1lZDI1NTE5AAAAIL0idNvgGiucWgup/mP78zyC23uFjYq0evcWdjGQUaBH

pkgs/agenix/update.sh

@@ -1,23 +0,0 @@
-#!/bin/sh
-
-set -e
-
-# All operations are done relative to root
-GITROOT=$(git rev-parse --show-toplevel)
-cd "$GITROOT"
-
-REVISION=${1:-main}
-
-TMPCLONE=$(mktemp -d)
-trap "rm -rf ${TMPCLONE}" EXIT
-
-git clone https://github.com/ryantm/agenix.git --revision="$REVISION" "$TMPCLONE" --depth=1
-
-cp "${TMPCLONE}/pkgs/agenix.sh" pkgs/agenix/agenix.sh
-cp "${TMPCLONE}/pkgs/agenix.nix" pkgs/agenix/default.nix
-sed -i 's#../example#./example#' pkgs/agenix/default.nix
-
-cp "${TMPCLONE}/example/"* pkgs/agenix/example/
-cp "${TMPCLONE}/example_keys/"* pkgs/agenix/example_keys/
-
-cp "${TMPCLONE}/modules/age.nix" m/module/agenix.nix

pkgs/amd-uprof/default.nix

@@ -86,13 +86,4 @@ in
       patchelf --add-needed libnuma.so $out/bin/AMDuProfPcm
       set +x
     '';
-
-    meta = {
-      description = "Performance analysis tool-suite for x86 based applications";
-      homepage = "https://www.amd.com/es/developer/uprof.html";
-      platforms = lib.platforms.linux;
-      license = lib.licenses.unfree;
-      maintainers = with lib.maintainers.bsc; [ rarias varcila ];
-    };
-
   }

pkgs/amd-uprof/driver.nix

@@ -29,7 +29,5 @@ in stdenv.mkDerivation {
     description = "AMD Power Profiler Driver";
     homepage = "https://www.amd.com/es/developer/uprof.html";
     platforms = lib.platforms.linux;
-    license = lib.licenses.unfree;
-    maintainers = with lib.maintainers.bsc; [ rarias varcila ];
   };
 }

pkgs/bench6/default.nix

@@ -1,6 +1,5 @@
 {
   stdenv
-, lib
 , bigotes
 , cmake
 , clangOmpss2
@@ -59,12 +58,4 @@ stdenv.mkDerivation rec {
   ];
   hardeningDisable = [ "all" ];
   dontStrip = true;
-
-  meta = {
-    homepage = "https://gitlab.pm.bsc.es/rarias/bench6";
-    description = "Set of micro-benchmarks for OmpSs-2 and several mini-apps";
-    maintainers = with lib.maintainers.bsc; [ rarias ];
-    platforms = lib.platforms.linux;
-    license = lib.licenses.gpl3Plus;
-  };
 }

pkgs/bigotes/default.nix

@@ -1,6 +1,5 @@
 {
   stdenv
-, lib
 , fetchFromGitHub
 , cmake
 }:
@@ -15,12 +14,4 @@ stdenv.mkDerivation {
     sha256 = "sha256-ktxM3pXiL8YXSK+/IKWYadijhYXqGoLY6adLk36iigE=";
   };
   nativeBuildInputs = [ cmake ];
-
-  meta = {
-    homepage = "https://github.com/rodarima/bigotes";
-    description = "Versatile benchmark tool";
-    maintainers = with lib.maintainers.bsc; [ rarias ];
-    platforms = lib.platforms.linux;
-    license = lib.licenses.gpl3Plus;
-  };
 }

pkgs/extrae/default.nix

@@ -20,7 +20,6 @@
 #, python3Packages
 , installShellFiles
 , symlinkJoin
-, enablePapi ? stdenv.hostPlatform == stdenv.buildPlatform # Disabled when cross-compiling
 }:
 
 let
@@ -88,7 +87,7 @@ stdenv.mkDerivation rec {
       --enable-sampling
       --with-unwind=${libunwind.dev}
       --with-xml-prefix=${libxml2.dev}
-      ${lib.optionalString enablePapi "--with-papi=${papi}"}
+      --with-papi=${papi}
       ${if (mpi != null) then ''--with-mpi=${mpi}''
         else ''--without-mpi''}
       --without-dyninst)
@@ -111,13 +110,4 @@ stdenv.mkDerivation rec {
 #    then [ "--enable-openmp" ]
 #    else []
 #  );
-
-  meta = {
-    homepage = "https://github.com/bsc-performance-tools/extrae";
-    description = "Instrumentation framework to generate execution traces of the most used parallel runtimes";
-    maintainers = [ ];
-    broken = true;
-    platforms = lib.platforms.linux;
-    license = lib.licenses.lgpl21Plus;
-  };
 }

pkgs/gpi-2/default.nix

@@ -1,6 +1,5 @@
 {
   stdenv
-, lib
 , fetchurl
 , symlinkJoin
 , slurm
@@ -53,12 +52,4 @@ stdenv.mkDerivation rec {
   buildInputs = [ slurm mpiAll rdma-core-all autoconf automake libtool rsync gfortran ];
 
   hardeningDisable = [ "all" ];
-
-  meta = {
-    homepage = "https://pm.bsc.es/gitlab/interoperability/extern/GPI-2";
-    description = "GPI-2 extended for supporting Task-Aware GASPI (TAGASPI) library";
-    maintainers = with lib.maintainers.bsc; [ rarias ];
-    platforms = lib.platforms.linux;
-    license = lib.licenses.gpl3Plus;
-  };
 }

pkgs/intel-compiler/icc2020.nix

@@ -1,5 +1,4 @@
 { stdenv
-, lib
 , fetchurl
 , rpmextract
 , autoPatchelfHook
@@ -60,12 +59,4 @@ stdenv.mkDerivation rec {
       rm $out/lib/*.dbg
     popd
   '';
-
-  meta = {
-    homepage = "https://www.intel.com/content/www/us/en/developer/tools/overview.html";
-    description = "Intel compiler";
-    maintainers = with lib.maintainers.bsc; [ rarias ];
-    platforms = lib.platforms.linux;
-    license = lib.licenses.unfree;
-  };
 }

pkgs/intel-compiler/icc2021.nix

@@ -145,12 +145,4 @@ in
       popd
     '';
 
-    meta = {
-      homepage = "https://www.intel.com/content/www/us/en/developer/tools/overview.html";
-      description = "Intel compiler";
-      maintainers = with lib.maintainers.bsc; [ rarias ];
-      platforms = lib.platforms.linux;
-      license = lib.licenses.unfree;
-    };
-
   }

pkgs/intel-mpi/default.nix

@@ -1,5 +1,4 @@
 { stdenv
-, lib
 , rpmextract
 , gcc
 , zlib
@@ -102,12 +101,4 @@ stdenv.mkDerivation rec {
     patchelf --set-rpath "$out/lib:${rdma-core}/lib:${libpsm2}/lib" $out/lib/libfabric.so
     echo "Patched RPATH in libfabric.so to: $(patchelf --print-rpath $out/lib/libfabric.so)"
   '';
-
-  meta = {
-    homepage = "https://www.intel.com/content/www/us/en/developer/tools/overview.html";
-    description = "Intel MPI";
-    maintainers = with lib.maintainers.bsc; [ rarias ];
-    platforms = lib.platforms.linux;
-    license = lib.licenses.unfree;
-  };
 }

pkgs/intel-oneapi/2023.nix

@@ -26,13 +26,6 @@
 
 let
 
-  meta = {
-    description = "Intel oneapi hpckit package component";
-    homepage = "https://www.intel.com/content/www/us/en/developer/tools/oneapi/hpc-toolkit-download.html";
-    license = lib.licenses.unfree;
-    maintainers = with lib.maintainers.bsc; [ abonerib ];
-  };
-
   gcc = gcc13;
 
   v = {
@@ -42,45 +35,19 @@ let
     mpi      = "2021.9.0";
   };
 
-  aptPackageIndex = stdenv.mkDerivation {
+  findMatch = name:
-    name = "intel-oneapi-packages";
-    srcs = [
-      # Run update.sh to update the package lists
-      ./amd64-packages ./all-packages
-    ];
-    phases = [ "installPhase" ];
-    installPhase = ''
-      awk -F': ' '\
-        BEGIN   { print "[ {" } \
-        NR>1 && /^Package: / { print "} {"; } \
-        /: /    { printf "%s = \"%s\";\n", $1, $2 } \
-        END     { print "} ]" }' $srcs > $out
-    '';
-  };
-
-  aptPackages = import aptPackageIndex;
-
-  apthost = "https://apt.repos.intel.com/oneapi/";
-
-  getSum = pkgList: name:
   let
-    matches = lib.filter (x: name == x.Package) pkgList;
+    aptPackages = builtins.fromJSON (builtins.readFile ./packages.json);
-    #n = lib.length matches;
+    matches = lib.filter (x: name == x.pname) aptPackages;
-    #match = builtins.trace (name + " -- ${builtins.toString n}") (lib.elemAt matches 0);
-    match = lib.elemAt matches 0;
-  in
-    match.SHA256;
-
-  getUrl = pkgList: name:
-  let
-    matches = lib.filter (x: name == x.Package) pkgList;
-    #match = assert lib.length matches == 1; lib.elemAt matches 0;
     n = lib.length matches;
-    match =
+    match = builtins.traceVerbose (name + " -- ${builtins.toString n}") (builtins.head matches);
-      #builtins.trace (name + " -- n=${builtins.toString n}")
+
-      (lib.elemAt matches 0);
+    apthost = "https://apt.repos.intel.com/oneapi/";
   in
-    apthost + match.Filename;
+    {
+      url = apthost + match.filename;
+      sha256 = match.sha256;
+    };
 
   uncompressDebs = debs: name: stdenv.mkDerivation {
     name = name;
@@ -94,16 +61,11 @@ let
         dpkg -x $src $out
       done
     '';
-
-    inherit meta;
   };
 
   joinDebs = name: names:
   let
-    urls = builtins.map (x: getUrl aptPackages x) names;
+    debs = builtins.map (x: builtins.fetchurl (findMatch x)) names;
-    sums = builtins.map (x: getSum aptPackages x) names;
-    getsrc = url: sha256: builtins.fetchurl { inherit url sha256; };
-    debs = lib.zipListsWith getsrc urls sums;
   in
     uncompressDebs debs "${name}-source";
 
@@ -154,8 +116,6 @@ let
         sed -i "s:I_MPI_SUBSTITUTE_INSTALLDIR:$out:g" "$i"
       done
     '';
-
-    inherit meta;
   };
 
   intel-tbb = stdenv.mkDerivation rec {
@@ -194,8 +154,6 @@ let
         rsync -a lib/intel64/gcc4.8/ $out/lib/
       popd
     '';
-
-    inherit meta;
   };
 
   intel-compiler-shared = stdenv.mkDerivation rec {
@@ -253,8 +211,6 @@ let
         popd
       popd
     '';
-
-    inherit meta;
   };
 
 
@@ -320,8 +276,6 @@ let
         ln -s $out/lib $out/lib_lin
       popd
     '';
-
-    inherit meta;
   };
 
   intel-compiler = stdenv.mkDerivation rec {
@@ -409,8 +363,6 @@ let
         rsync -a documentation/en/man/common/ $out/share/man/
       popd
     '';
-
-    inherit meta;
   };
 
   wrapIntel = { cc, mygcc, extraBuild ? "", extraInstall ? "" }:
@@ -472,7 +424,7 @@ let
     '';
   };
 
-  ifort-wrapper = wrapIntel rec {
+  ifort-wrapper = wrapIntel {
     cc = intel-compiler-fortran;
     mygcc = gcc;
     extraBuild = ''

pkgs/intel-oneapi/packages.nix

@@ -0,0 +1,205 @@
+{ lib
+, stdenv
+, callPackage
+, dpkg
+, fetchurl
+, recurseIntoAttrs
+
+, sqlite
+, elfutils
+}:
+
+let
+  inherit (builtins)
+    elem attrNames attrValues concatMap filter fromJSON getAttr groupBy head isNull listToAttrs map mapAttrs readFile replaceStrings splitVersion ;
+  inherit (lib)
+    converge findFirst groupBy' hasPrefix optional pipe take toInt toList versionAtLeast versionOlder ;
+
+  aptData = fromJSON (readFile ./packages.json);
+
+  # Compare versions in debian control file syntax
+  # See: https://www.debian.org/doc/debian-policy/ch-relationships.html#syntax-of-relationship-fields
+  #
+  # NOTE: this is not a proper version comparison
+  #
+  # A proper version solver, should aggregate dependencies with the same name
+  # and compute the constraint (e.g. a (>= 2) a (<< 5) -> 2 <= a << 5)
+  #
+  # But in the intel repo, there are no such "duplicated" dependencies to specify
+  # upper limits, which leads to issues when intel-hpckit-2021 depends on things
+  # like intel-basekit >= 2021.1.0-2403 and we end up installing the newest
+  # basekit instead of the one from 2021.
+  #
+  # To mitigate this, >= is set to take the latest version with matching major
+  # and minor (only revision and patch are allowed to change)
+  compareVersions = got: kind: want:
+    let
+      g0 = take 2 (splitVersion got);
+      w0 = take 2 (splitVersion want);
+    in if isNull want then true
+    else if kind == "=" then got == want
+    else if kind == "<<" then versionOlder got want
+    else if kind == "<=" then versionAtLeast want got
+    else if kind == ">>" then versionOlder want got
+    else if kind == ">=" then (g0 == w0) && versionAtLeast got want # always match major version
+    else throw "unknown operation: ${kind}";
+
+  findMatching = { pname, kind, version }:
+    findFirst (x: pname == x.pname && compareVersions x.version kind version) null aptData;
+
+  isIntel = pkg: (hasPrefix "intel-" pkg.pname);
+
+  expandDeps = pkg: (map findMatching (filter isIntel pkg.dependencies)) ++ (optional (pkg.size != 0) pkg);
+
+  # get the oldest by major version. If they have the same major version, take
+  # the newest. This prevents most issues with resolutions
+  # versionOlder b a -> true if b is older than a (b `older` a)
+  getNewerInMajor = a: b: let
+    va = a.version;
+    vb = b.version;
+    va0 = head (splitVersion va);
+    vb0 = head (splitVersion vb);
+  in
+  if isNull a then b
+  else if va0 != vb0 then
+    if va0 > vb0 then b else a
+  else if versionOlder vb va then a else b;
+  removeDups = l: attrValues (groupBy' getNewerInMajor null (getAttr "provides") l);
+
+  _resolveDeps = converge (l: removeDups (concatMap expandDeps l));
+  resolveDeps = pkg: let deps = _resolveDeps (toList pkg);
+      namedDeps = (map (x: "${x.pname}-${x.version}") deps);
+    in builtins.traceVerbose (builtins.deepSeq namedDeps namedDeps) deps;
+
+  blacklist = [
+    "intel-basekit-env"
+    "intel-basekit-getting-started"
+    "intel-hpckit-env"
+    "intel-hpckit-getting-started"
+    "intel-oneapi-advisor"
+    "intel-oneapi-common-licensing"
+    "intel-oneapi-common-oneapi-vars"
+    "intel-oneapi-common-vars"
+    "intel-oneapi-compiler-cpp-eclipse-cfg"
+    "intel-oneapi-compiler-dpcpp-eclipse-cfg"
+    "intel-oneapi-condaindex"
+    "intel-oneapi-dev-utilities-eclipse-cfg"
+    "intel-oneapi-dpcpp-ct-eclipse-cfg"
+    "intel-oneapi-eclipse-ide"
+    "intel-oneapi-hpc-toolkit-getting-started"
+    "intel-oneapi-icc-eclipse-plugin-cpp"
+    "intel-oneapi-vtune"
+    "intel-oneapi-vtune-eclipse-plugin-vtune"
+  ];
+
+  isInBlacklist = pkg: elem pkg.provides blacklist;
+  removeBlacklist = filter (e: !(isInBlacklist e));
+
+  dpkgExtractAll = pname: version: {srcs, deps}: stdenv.mkDerivation {
+    inherit pname version srcs;
+
+    nativeBuildInputs = [ dpkg ];
+    phases = [ "installPhase" ];
+
+    passthru = { inherit deps; };
+
+    installPhase = ''
+      mkdir -p $out
+      for src in $srcs; do
+        echo "Unpacking $src"
+        dpkg -x $src $out
+      done
+    '';
+  };
+
+  apthost = "https://apt.repos.intel.com/oneapi/";
+  fetchDeb = p: fetchurl { url = apthost + p.filename; inherit (p) sha256; };
+
+  buildIntel = pkg: pipe pkg [
+    resolveDeps
+    removeBlacklist
+    (l: {srcs = map fetchDeb l; deps = l; })
+    (dpkgExtractAll "${pkg.provides}-extracted" pkg.version)
+  ];
+
+  findHpcKit = year: findMatching { pname = "intel-hpckit"; kind = "<<"; version = toString (year+1); };
+  years = map toInt (attrNames components);
+
+  patchIntel = callPackage ./patch_intel.nix { };
+
+  # Version information for each hpckit. This is used to normalize the paths
+  # so that files are in $out/{bin,lib,include...} instead of all over the place
+  # in $out/opt/intel/oneapi/*/*/{...}.
+  #
+  # The most important is the compiler component, which is used to build the
+  # stdenv for the hpckit.
+  #
+  # NOTE: this have to be manually specified, so we can avoid IFD. To add a
+  # new version, add a new field with an empty attrset, (e.g. "2026" = {}; ),
+  # build hpckit_2026.unpatched and use the values from
+  # result/opt/intel/oneapi/* to populate the attrset.
+  #
+  # WARN: if there are more than one version in the folders of the unpatched
+  # components, our dependency resolution hacks have probably failed and the
+  # package set may be broken.
+  components = {
+    "2025" = {
+      ishmem = "1.4";
+      pti = "0.13";
+      tcm = "1.4";
+      umf = "0.11";
+
+      ccl = "2021.16";
+      compiler = "2025.2";
+      dal = "2025.8";
+      debugger = "2025.2";
+      dev-utilities = "2025.2";
+      dnnl = "2025.2";
+      dpcpp-ct = "2025.2";
+      dpl = "2022.9";
+      ipp = "2022.2";
+      ippcp = "2025.2";
+      mkl = "2025.2";
+      mpi = "2021.16";
+      tbb = "2022.2";
+    };
+    "2024" = {
+      tcm = "1.1";
+
+      ccl = "2021.13";
+      compiler = "2024.2";
+      dal = "2024.6";
+      debugger = "2024.2";
+      dev-utilities = "2024.2";
+      diagnostics = "2024.2";
+      dnnl = "2024.2";
+      dpcpp-ct = "2024.2";
+      dpl = "2022.6";
+      ipp = "2021.12";
+      ippcp = "2021.12";
+      mkl = "2024.2";
+      mpi = "2021.13";
+      tbb = "2021.13";
+
+      extraPackages = [
+        sqlite
+        elfutils
+      ];
+    };
+  };
+
+  replaceDots = replaceStrings ["."] ["_"];
+
+in recurseIntoAttrs (listToAttrs (map (year: let
+      year_str = toString year;
+    in {
+      name = "hpckit_${year_str}";
+      value = patchIntel {unpatched = buildIntel (findHpcKit year); components = components.${year_str}; };
+  }) years)) // {
+  apt = pipe aptData [
+    (groupBy (p: replaceDots p.provides))
+    (mapAttrs (_: l: listToAttrs (map (pkg: { name = replaceDots ("v" + pkg.version); value = pkg; }) l)))
+  ] ;
+
+  inherit resolveDeps patchIntel buildIntel;
+}

pkgs/intel-oneapi/patch_intel.nix

@@ -0,0 +1,179 @@
+{ stdenvNoCC
+, lib
+, symlinkJoin
+, autoPatchelfHook
+, wrapCCWith
+, overrideCC
+, gcc13
+, gcc13Stdenv
+, hwloc
+, libelf
+, libffi_3_3
+, libpsm2
+, libuuid
+, libxml2
+, numactl
+, ocl-icd
+, openssl
+, python3
+, rdma-core
+, ucx
+, zlib
+, makeOverridable
+, recurseIntoAttrs
+}:
+
+makeOverridable (
+{
+  unpatched,
+  components ? { },
+  extraPackages ? components.extraPackages or []
+}:
+
+let
+  inherit (builtins) attrValues filter mapAttrs removeAttrs;
+
+  gcc = gcc13;
+  stdenv = gcc13Stdenv;
+
+  __components = removeAttrs components ["extraPackages"];
+  _components = __components;
+  # _components = lib.traceSeqN 2 {
+  #   inherit unpatched __components;
+  #   deps = builtins.map (x: "${x.pname}-${x.version}") unpatched.deps;
+  # } __components;
+
+  wrapIntel = { cc, extraBuildCommands ? "", extraInstall ? "", ... }@args:
+    let
+      targetConfig = stdenv.targetPlatform.config;
+    in (wrapCCWith {
+      inherit cc;
+      extraBuildCommands = ''
+        echo "-L${gcc.cc}/lib/gcc/${targetConfig}/${gcc.version}" >> $out/nix-support/cc-ldflags
+        echo "-L${gcc.cc.lib}/lib" >> $out/nix-support/cc-ldflags
+        echo "-L${cc}/lib" >> $out/nix-support/cc-ldflags
+
+        # echo "--gcc-toolchain=${gcc.cc}" >> $out/nix-support/libcxx-cxxflags
+        echo "--gcc-toolchain=${gcc.cc}" >> $out/nix-support/cc-cflags
+
+        # For some reason, If we don't resolve the realpath things go wrong
+        for stddef in ${cc}/lib/clang/*/include/stddef.h ; do
+          dir=$(dirname $(realpath "$stddef"))
+          echo "-isystem $dir" >> $out/nix-support/cc-cflags
+        done
+
+        echo "-isystem ${cc}/include" >> $out/nix-support/cc-cflags
+        echo "-isystem ${cc}/include/intel64" >> $out/nix-support/cc-cflags
+
+        for dir in ${gcc.cc}/lib/gcc/${targetConfig}/*/include; do
+          echo "-isystem $dir" >> $out/nix-support/cc-cflags
+        done
+
+        for dir in ${gcc.cc}/include/c++/*; do
+          echo "-isystem $dir" >> $out/nix-support/libcxx-cxxflags
+        done
+        for dir in ${gcc.cc}/include/c++/*/${targetConfig}; do
+          echo "-isystem $dir" >> $out/nix-support/libcxx-cxxflags
+        done
+
+        # FIXME: We should find a better way to modify the PATH instead of using
+        # this ugly hack. See https://jungle.bsc.es/git/rarias/bscpkgs/issues/9
+        echo 'path_backup="${gcc.cc}/bin:$path_backup"' >> $out/nix-support/cc-wrapper-hook
+
+        # Disable hardening by default
+        echo "" > $out/nix-support/add-hardening.sh
+      '' + extraBuildCommands;
+    } // (removeAttrs args ["cc" "extraBuildCommands" "extraInstall"])
+    ).overrideAttrs (old: {
+      installPhase = old.installPhase + extraInstall;
+    });
+
+in
+stdenvNoCC.mkDerivation (finalAttrs: {
+  pname = lib.removeSuffix "-extracted" unpatched.pname;
+  inherit (unpatched) version;
+  src = unpatched;
+
+  phases = [ "installPhase" "fixupPhase" ];
+  buildInputs = [
+    libffi_3_3
+    libelf
+    libxml2
+    hwloc
+    numactl
+    libuuid
+    libpsm2
+    zlib
+    ocl-icd
+    rdma-core
+    ucx
+    openssl
+    python3
+    stdenv.cc.cc.lib
+  ] ++ extraPackages;
+
+  autoPatchelfIgnoreMissingDeps = [ "libhwloc.so.5" "libcuda.so.1" "libze_loader.so.1" ];
+
+  # There are broken symlinks that go outside packages, ignore them
+  dontCheckForBrokenSymlinks = true;
+
+  nativeBuildInputs = [ autoPatchelfHook ];
+  installPhase = ''
+    cp -r $src/opt/intel/oneapi/ $out
+  '';
+
+  passthru = let
+    pkgs = mapAttrs
+      (folder: version: symlinkJoin {
+        pname = "intel-${folder}";
+        inherit version;
+        paths = ["${finalAttrs.finalPackage}/${folder}/${version}"];
+      })
+      _components;
+  in pkgs // {
+    inherit unpatched;
+    pkgs = recurseIntoAttrs pkgs;
+    components = _components;
+
+    # This contains all packages properly symlinked into toplevel directories
+    # in $out.
+    #
+    # NOTE: there are clashes with packages that have symlinks outside their
+    # scope (libtcm and env/vars.sh)
+    all = symlinkJoin {
+      pname = finalAttrs.finalPackage + "-symlinked";
+      inherit (finalAttrs.finalPackage) version;
+      paths = filter lib.isDerivation (attrValues finalAttrs.finalPackage.pkgs);
+    };
+
+    stdenv = overrideCC stdenv finalAttrs.finalPackage.cc;
+
+    cc = wrapIntel {
+      cc = finalAttrs.finalPackage.pkgs.compiler;
+      extraBuildCommands = ''
+        wrap icx  $wrapper $ccPath/icx
+        wrap icpx $wrapper $ccPath/icpx
+        wrap ifx  $wrapper $ccPath/ifx
+
+        ln -s $out/bin/icpx $out/bin/c++
+        ln -s $out/bin/icx  $out/bin/cc
+
+        # Use this to detect when a compiler subprocess is called
+        # from icpx (--fsycl-host-compiler)
+        echo 'export "NIX_CC_WRAPPER_INTEL=1"' >> $out/nix-support/cc-wrapper-hook
+
+        sed -i 's/.*isCxx=0/isCxx=1/' $out/bin/icpx
+
+        # oneMath looks for sycl libraries in bin/../lib
+        ln -s ${finalAttrs.finalPackage.pkgs.compiler}/lib $out/lib
+        ln -s ${finalAttrs.finalPackage.pkgs.compiler}/include $out/include
+      '';
+      extraInstall = ''
+        export named_cc="icx"
+        export named_cxx="icpx"
+        export named_fc="ifx"
+      '';
+    };
+  };
+
+}))

pkgs/intel-oneapi/process.jq

@@ -0,0 +1,29 @@
+#!/usr/bin/env -S jq -f
+
+def extract_fields: {
+        pname : .Package,
+        version : .Version,
+        provides : .Package | sub("[0-9.-]*$"; ""),
+        filename : .Filename,
+        size : ."Installed-Size" | tonumber,
+        sha256 : .SHA256,
+        dependencies : .Depends,
+    } ;
+
+# parses dependencies into a list of [{.pname, .kind, .version}]
+# some dependencies do not have a version specified, in which case, kind = version = null
+#
+# example dependencies:
+# intel-oneapi-common-vars (>= 2023.0.0-25325), intel-oneapi-common-licensing-2023.0.0
+
+def split_dependencies : map(try(.dependencies |= split(",\\s?"; "")) // .dependencies |= []) ;
+
+def match_version : capture("(?<pname>[a-zA-Z0-9_\\-.]*) *(\\((?<kind>[<>=]*) *(?<version>.*)\\))?"; "") ;
+
+def parse_dependencies : map_values(.dependencies.[] |= match_version) ;
+
+def sort_version_decreasing : sort_by(.version | split("[-.]"; "") | map(tonumber)) | reverse ;
+
+map(extract_fields) | split_dependencies | parse_dependencies | sort_version_decreasing
+
+# [.[] | select(.pname == "intel-hpckit") | .version]

pkgs/intel-oneapi/toJson.awk

@@ -0,0 +1,29 @@
+#!/usr/bin/env -S awk -f
+
+BEGIN   {
+    FS=": "
+
+    prev_empty=1
+    t="  "
+
+    print "[ {"
+}
+
+!NF { # empty line, update separator so next non empty line closes the dict
+    prev_empty=1
+    t="},\n{ "
+    next # skip line (we won't match anything else)
+}
+
+{
+    printf t "\"%s\" : \"%s\"\n", $1, $2
+
+    if (prev_empty) {
+        # we were the first after a group of empty lines, following ones have to
+        # have a comma
+        prev_empty=0
+        t=", "
+    }
+}
+
+END     { print "} ]" }

pkgs/intel-oneapi/update.sh

@@ -1,4 +1,11 @@
 #!/bin/sh
 
-curl https://apt.repos.intel.com/oneapi/dists/all/main/binary-amd64/Packages -o amd64-packages
+out_64=$(mktemp intel-api.64.XXXXXX)
-curl https://apt.repos.intel.com/oneapi/dists/all/main/binary-all/Packages -o all-packages
+out_all=$(mktemp intel-api.all.XXXXXX)
+trap 'rm -f "$out_64" "$out_all"' EXIT INT HUP
+
+curl https://apt.repos.intel.com/oneapi/dists/all/main/binary-amd64/Packages -o "$out_64"
+curl https://apt.repos.intel.com/oneapi/dists/all/main/binary-all/Packages -o "$out_all"
+
+# NOTE: we use `jq -r tostring` to minify the json (3.2Mb -> 2.3Mb)
+cat "$out_64" "$out_all" | ./toJson.awk | ./process.jq | jq -r tostring >packages.json

pkgs/llvm-ompss2/clang.nix

@@ -16,19 +16,19 @@
 , useGit ? false
 , gitUrl ? "ssh://git@bscpm04.bsc.es/llvm-ompss/llvm-mono.git"
 , gitBranch ? "master"
-, gitCommit ? "872ba63f86edaefc9787984ef3fae9f2f94e0124" # github-release-2025.11
+, gitCommit ? "880e2341c56bad1dc14e8c369fb3356bec19018e"
 }:
 
 let
   stdenv = llvmPackages_latest.stdenv;
 
   release = rec {
-    version = "2025.11";
+    version = "2025.06";
     src = fetchFromGitHub {
       owner = "bsc-pm";
       repo = "llvm";
       rev = "refs/tags/github-release-${version}";
-      hash = "sha256-UgwMTUkM9Z87dDH205swZFBeFhrcbLAxginViG40pBM=";
+      hash = "sha256-ww9PpRmtz/M9IyLiZ8rAehx2UW4VpQt+svf4XfKBzKo=";
     };
   };
 
@@ -126,12 +126,4 @@ in stdenv.mkDerivation {
 # nanos6 installation, but this is would require a recompilation of clang each
 # time nanos6 is changed. Better to use the environment variable NANOS6_HOME,
 # and specify nanos6 at run time.
-
-  meta = {
-    homepage = "https://gitlab.pm.bsc.es/llvm-ompss/llvm-mono";
-    description = "C language family frontend for LLVM (for OmpSs-2)";
-    maintainers = with lib.maintainers.bsc; [ rpenacob ];
-    platforms = lib.platforms.linux;
-    license = [ lib.licenses.asl20 lib.licenses.llvm-exception ];
-  };
 }

pkgs/llvm-ompss2/default.nix

@@ -2,7 +2,9 @@
   stdenv
 , lib
 , gcc
+, gcc13
 , clangOmpss2Unwrapped
+, writeShellScript
 , openmp ? null
 , wrapCCWith
 , llvmPackages_latest
@@ -37,10 +39,7 @@ let
   inherit gcc;
   cc = clangOmpss2Unwrapped;
   gccVersion = with versions; let v = gcc.version; in concatStringsSep "." [(major v) (minor v) (patch v)];
-in wrapCCWith {
+
-  inherit cc bintools;
-  # extraPackages adds packages to depsTargetTargetPropagated
-  extraPackages = optional (openmp != null) openmp;
   extraBuildCommands = ''
     echo "-target ${targetConfig}" >> $out/nix-support/cc-cflags
     echo "-B${gcc.cc}/lib/gcc/${targetConfig}/${gccVersion}" >> $out/nix-support/cc-cflags
@@ -57,14 +56,52 @@ in wrapCCWith {
     echo "--gcc-toolchain=${gcc}" >> $out/nix-support/cc-cflags
 
     wrap clang++  $wrapper $ccPath/clang++
-
-  '' + optionalString (openmp != null) ''
-    echo "export OPENMP_RUNTIME=${ompname}" >> $out/nix-support/cc-wrapper-hook
-  '' + optionalString (ompss2rt != null) ''
-    echo "export OMPSS2_RUNTIME=${rtname}" >> $out/nix-support/cc-wrapper-hook
-    echo "export ${homevar}=${ompss2rt}"   >> $out/nix-support/cc-wrapper-hook
-  '' + optionalString (ompss2rt != null && ompss2rt.pname == "nodes") ''
-    echo "export NOSV_HOME=${ompss2rt.nosv}" >> $out/nix-support/cc-wrapper-hook
   '';
-}
 
+  envExports = lib.optionalString (openmp != null) ''
+      echo "export OPENMP_RUNTIME=${ompname}" >> $out/nix-support/cc-wrapper-hook
+    '' + optionalString (ompss2rt != null) ''
+      echo "export OMPSS2_RUNTIME=${rtname}" >> $out/nix-support/cc-wrapper-hook
+      echo "export ${homevar}=${ompss2rt}"   >> $out/nix-support/cc-wrapper-hook
+    '' + optionalString (ompss2rt != null && ompss2rt.pname == "nodes") ''
+      echo "export NOSV_HOME=${ompss2rt.nosv}" >> $out/nix-support/cc-wrapper-hook
+    '';
+
+  extraPackages = optional (openmp != null) openmp;
+
+  wrappedCC = wrapCCWith {
+    # extraPackages adds packages to depsTargetTargetPropagated
+    inherit cc bintools extraPackages;
+    extraBuildCommands = extraBuildCommands + envExports;
+  };
+
+  resetIntelCCFlags = let tconf = builtins.replaceStrings ["-"] ["_"] targetConfig;
+  in writeShellScript "remove-intel.sh" ''
+    if [ "''${NIX_CC_WRAPPER_INTEL:-0}" = 1 ]; then
+      unset NIX_CFLAGS_COMPILE_${tconf}
+      unset NIX_CC_WRAPPER_FLAGS_SET_${tconf}
+
+      if (( "''${NIX_DEBUG:-0}" >= 1 )); then
+        echo "ompss2: cleaned NIX_CFLAGS_COMPILE_${tconf} (invokation from intel compiler detected)"
+      fi
+    fi
+  '';
+
+  intelExtraBuildCommands = ''
+    sed -i 's|# Flirting.*|source ${resetIntelCCFlags}\n\n&|' $out/bin/clang
+    sed -i 's|# Flirting.*|source ${resetIntelCCFlags}\n\n&|' $out/bin/clang++
+  '';
+
+  wrappedCCIntel = wrapCCWith {
+    inherit bintools extraPackages;
+    cc = cc.override { gcc = gcc13; }; # Intel uses gcc13, so we have to match it
+    gccForLibs = gcc13;
+    # extraPackages adds packages to depsTargetTargetPropagated
+    extraBuildCommands = intelExtraBuildCommands + envExports;
+  };
+
+in wrappedCC.overrideAttrs (oldAttrs: {
+    passthru = oldAttrs.passthru // {
+      forIcpx = wrappedCCIntel;
+    };
+  })

pkgs/llvm-ompss2/openmp.nix

@@ -74,13 +74,5 @@ stdenv.mkDerivation rec {
   passthru = {
     inherit nosv;
   };
-
-  meta = {
-    homepage = "https://gitlab.pm.bsc.es/llvm-ompss/llvm-mono";
-    description = "Support for the OpenMP language (with nOS-V)";
-    maintainers = with lib.maintainers.bsc; [ rpenacob ];
-    platforms = lib.platforms.linux;
-    license = [ lib.licenses.asl20 lib.licenses.llvm-exception ];
-  };
 }
 

pkgs/lmbench/default.nix

@@ -35,16 +35,13 @@ stdenv.mkDerivation rec {
       CFLAGS=-Wno-implicit-int
       CPPFLAGS=-I${libtirpc.dev}/include/tirpc
       LDFLAGS=-ltirpc
-      CC=$CC
-      AR=$AR
     )
   '';
 
   meta = {
     description = "lmbench";
-    homepage = "https://github.com/intel/lmbench";
+    homepage = "http://www.bitmover.com/lmbench/";
-    maintainers = with lib.maintainers.bsc; [ rarias ];
+    maintainers = [ ];
     platforms = lib.platforms.all;
-    license = lib.licenses.gpl2Plus;
   };
 }

pkgs/maintainers.nix

@@ -1,7 +0,0 @@
-builtins.mapAttrs (name: value: { email = name + "@bsc.es"; } // value) {
-  abonerib.name = "Aleix Boné";
-  arocanon.name = "Aleix Roca";
-  rarias.name = "Rodrigo Arias";
-  rpenacob.name = "Raúl Peñacoba";
-  varcila.name = "Vincent Arcila";
-}

pkgs/mcxx/default.nix

@@ -1,6 +1,5 @@
 {
   stdenv
-, lib
 , fetchFromGitHub
 , autoreconfHook
 , nanos6
@@ -63,12 +62,4 @@ stdenv.mkDerivation rec {
 # Fails with "memory exhausted" with bison 3.7.1
 #    "--enable-bison-regeneration"
   ];
-
-  meta = {
-    homepage = "https://github.com/bsc-pm/mcxx";
-    description = "C/C++/Fortran source-to-source compilation infrastructure aimed at fast prototyping";
-    maintainers = with lib.maintainers.bsc; [ rpenacob ];
-    platforms = lib.platforms.linux;
-    license = lib.licenses.gpl3Plus;
-  };
 }

pkgs/mcxx/git.nix

@@ -1,6 +1,5 @@
 {
   stdenv
-, lib
 , fetchFromGitHub
 , autoreconfHook
 , nanos6
@@ -58,12 +57,4 @@ stdenv.mkDerivation rec {
 # Fails with "memory exhausted" with bison 3.7.1
 #    "--enable-bison-regeneration"
   ];
-
-  meta = {
-    homepage = "https://github.com/bsc-pm/mcxx";
-    description = "C/C++/Fortran source-to-source compilation infrastructure aimed at fast prototyping";
-    maintainers = with lib.maintainers.bsc; [ rpenacob ];
-    platforms = lib.platforms.linux;
-    license = lib.licenses.gpl3Plus;
-  };
 }

pkgs/mcxx/rarias.nix

@@ -1,5 +1,4 @@
 { stdenv
-, lib
 , fetchgit
 , autoreconfHook
 , nanos6
@@ -57,12 +56,4 @@ stdenv.mkDerivation rec {
   #preBuild = ''
   #  make generate_builtins_ia32 GXX_X86_BUILTINS=${gcc}/bin/g++
   #'';
-  #
-  meta = {
-    homepage = "https://github.com/bsc-pm/mcxx";
-    description = "C/C++/Fortran source-to-source compilation infrastructure aimed at fast prototyping";
-    maintainers = with lib.maintainers.bsc; [ rarias ];
-    platforms = lib.platforms.linux;
-    license = lib.licenses.gpl3Plus;
-  };
 }

pkgs/mpich/default.nix

@@ -33,8 +33,4 @@ in mpich.overrideAttrs (old: {
     "FCFLAGS=-fallow-argument-mismatch"
   ];
   hardeningDisable = [ "all" ];
-
-  meta = old.meta // {
-    maintainers = old.meta.maintainers ++ (with lib.maintainers.bsc; [ rarias ]);
-  };
 })

pkgs/nanos6/default.nix

@@ -16,7 +16,6 @@
 , jemallocNanos6 ? null
 , cachelineBytes ? 64
 , enableGlibcxxDebug ? false
-, enablePapi ? stdenv.hostPlatform == stdenv.buildPlatform # Disabled when cross-compiling
 , useGit ? false
 , gitUrl ? "ssh://git@bscpm04.bsc.es/nanos6/nanos6"
 , gitBranch ? "master"
@@ -48,8 +47,6 @@ let
   };
 
   source = if (useGit) then git else release;
-
-  isCross = stdenv.hostPlatform != stdenv.buildPlatform;
 in
   stdenv.mkDerivation (source // {
     pname = "nanos6";
@@ -74,13 +71,9 @@ in
       "--disable-all-instrumentations"
       "--enable-ovni-instrumentation"
       "--with-ovni=${ovni}"
-      "--with-boost=${boost.dev}"
     ] ++
       (optional enableJemalloc "--with-jemalloc=${jemallocNanos6}") ++
-      (optional enableGlibcxxDebug "CXXFLAGS=-D_GLIBCXX_DEBUG") ++
+      (optional enableGlibcxxDebug "CXXFLAGS=-D_GLIBCXX_DEBUG");
-      # Most nanos6 api symbols are resolved at runtime, so prefer
-      # ifunc by default
-      (optional isCross "--with-symbol-resolution=ifunc");
 
     postConfigure = lib.optionalString (!enableDebug) ''
       # Disable debug
@@ -104,14 +97,16 @@ in
       # TODO: papi_version is needed for configure:
       # ./configure: line 27378: papi_version: command not found
       # This probably breaks cross-compilation
-    ] ++ lib.optionals enablePapi [ papi ];
+      papi
+    ];
 
     buildInputs = [
       boost
       numactl
       hwloc
+      papi
       ovni
-    ] ++ lib.optionals enablePapi [ papi ];
+    ];
 
     # Create a script that sets NANOS6_HOME
     postInstall = ''
@@ -119,12 +114,11 @@ in
       echo "export NANOS6_HOME=$out" >> $out/nix-support/setup-hook
     '';
 
-    meta = {
+    meta = with lib; {
       homepage = "https://github.com/bsc-pm/nanos6";
       description = "Nanos6 runtime for OmpSs-2" +
         optionalString (enableDebug) " (with debug symbols)";
-      maintainers = with lib.maintainers.bsc; [ rarias ];
+      platforms = platforms.linux;
-      platforms = lib.platforms.linux;
+      license = licenses.gpl3;
-      license = lib.licenses.gpl3Plus;
     };
   })

pkgs/nanos6/jemalloc.nix

@@ -1,4 +1,4 @@
-{ jemalloc, lib }:
+{ jemalloc }:
 
 jemalloc.overrideAttrs (old: {
   configureFlags = old.configureFlags ++ [
@@ -8,6 +8,5 @@ jemalloc.overrideAttrs (old: {
   hardeningDisable = [ "all" ];
   meta = old.meta // {
     description = old.meta.description + " (for Nanos6)";
-    maintainers = (old.meta.maintainers or []) ++ (with lib.maintainers.bsc; [ rarias ]);
   };
 })

pkgs/nix-wrap/default.nix

@@ -1,6 +1,5 @@
 {
   stdenv
-, lib
 , bashInteractive
 , busybox
 , nix
@@ -87,14 +86,5 @@ stdenv.mkDerivation rec {
     mkdir -p $out/share
     cp ${nix_conf} $out/share/nix.conf
   '';
-
-  meta = {
-    homepage = null;
-    description = "nix bubblewrap wrapper";
-    maintainers = [ ];
-    broken = true;
-    platforms = lib.platforms.linux;
-    license = lib.licenses.mit;
-  };
 }
 

pkgs/nixgen/default.nix

@@ -1,22 +0,0 @@
-{
-  stdenv
-, lib
-}:
-
-stdenv.mkDerivation {
-  pname = "nixgen";
-  version = "0.0.1";
-  src = ./nixgen;
-  dontUnpack = true;
-  phases = [ "installPhase" ];
-  installPhase = ''
-    mkdir -p $out/bin
-    cp -a $src $out/bin/nixgen
-  '';
-  meta = {
-    description = "Quickly generate flake.nix from command line";
-    maintainers = with lib.maintainers.bsc; [ rarias ];
-    platforms = lib.platforms.linux;
-    license = lib.licenses.gpl3Plus;
-  };
-}

pkgs/nixgen/nixgen

@@ -1,97 +0,0 @@
-#!/bin/sh
-#
-# Copyright (c) 2025, Barcelona Supercomputing Center (BSC)
-# SPDX-License-Identifier: GPL-3.0+
-# Author: Rodrigo Arias Mallo <rodrigo.arias@bsc.es>
-
-function usage() {
-  echo "USAGE: nixgen [-f] [package [...]] [-b package [...]]" >&2
-  echo "  Generates a flake.nix file with the given packages." >&2
-  echo "  After flake.nix is created, use 'nix develop' to enter the shell." >&2
-  echo "OPTIONS" >&2
-  echo "  -f               Overwrite existing flake.nix (default: no)." >&2
-  echo "  packages...      Add these packages to the shell." >&2
-  echo "  -b packages...   Add the dependencies needed to build these packages." >&2
-  echo "EXAMPLE" >&2
-  echo "  $ nixgen ovni bigotes -b nosv tampi" >&2
-  echo "  Adds the packages ovni and bigotes as well as all required dependencies" >&2
-  echo "  to build nosv and tampi." >&2
-  echo "AUTHOR" >&2
-  echo "  Rodrigo Arias Mallo <rodrigo.arias@bsc.es>" >&2
-  exit 1
-}
-
-mode=package
-packages=
-inputsFrom=
-force=
-
-if [[ $# -eq 0 ]]; then
-  usage
-fi
-
-while [[ $# -gt 0 ]]; do
-    case $1 in -b)
-      mode=build
-      shift
-      ;;
-    -f)
-      force=1
-      shift
-      ;;
-    -h)
-      usage
-      ;;
-    -*|--*)
-      echo "error: unknown option $1" >&2
-      exit 1
-      ;;
-    *)
-      if [ "$mode" == "package" ]; then
-        packages+="${packages:+ }$1"
-      else
-        inputsFrom+="${inputsFrom:+ }$1"
-      fi
-      shift
-      ;;
-  esac
-done
-
-if [ ! "$force" -a -e flake.nix ]; then
-  echo "error: flake.nix exists, force overwrite with -f" >&2
-  exit 1
-fi
-
-cat > flake.nix <<EOF
-{
-  inputs.jungle.url = "git+https://jungle.bsc.es/git/rarias/jungle";
-  outputs = { self, jungle }:
-  let
-    nixpkgs = jungle.inputs.nixpkgs;
-    customOverlay = (final: prev: {
-      # Example overlay, for now empty
-    });
-    pkgs = import nixpkgs {
-      system = "x86_64-linux";
-      overlays = [
-        # Apply jungle overlay to get our BSC custom packages
-        jungle.outputs.bscOverlay
-        # And on top apply our local changes to customize for cluster
-        customOverlay
-      ];
-    };
-  in {
-    devShells.x86_64-linux.default = pkgs.mkShell {
-      pname = "devshell";
-      # Include these packages in the shell
-      packages = with pkgs; [
-        $packages
-      ];
-      # The dependencies needed to build these packages will be also included
-      inputsFrom = with pkgs; [
-        $inputsFrom
-      ];
-    };
-  };
-}
-EOF

pkgs/nixtools/default.nix

@@ -1,6 +1,5 @@
 {
   stdenv
-, lib
 , glibc
 }:
 
@@ -16,11 +15,4 @@ stdenv.mkDerivation rec {
   makeFlags = [ "DESTDIR=$(out)" ];
   preBuild = "env";
   dontPatchShebangs = true;
-
-  meta = {
-    homepage = "https://gitlab.pm.bsc.es/rarias/nixtools";
-    description = "nix bubblewrap wrapper";
-    maintainers = with lib.maintainers.bsc; [ rarias ];
-    platforms = lib.platforms.linux;
-  };
 }

pkgs/nodes/default.nix

@@ -3,6 +3,7 @@
 , lib
 , fetchFromGitHub
 , pkg-config
+, perl
 , numactl
 , hwloc
 , boost
@@ -10,23 +11,22 @@
 , ovni
 , nosv
 , clangOmpss2
-, which
 , useGit ? false
 , gitUrl ? "ssh://git@gitlab-internal.bsc.es/nos-v/nodes.git"
 , gitBranch ? "master"
-, gitCommit ? "511489e71504a44381e0930562e7ac80ac69a848" # version-1.4
+, gitCommit ? "6002ec9ae6eb876d962cc34366952a3b26599ba6"
 }:
 
 with lib;
 
 let
   release = rec {
-    version = "1.4";
+    version = "1.3";
     src = fetchFromGitHub {
       owner = "bsc-pm";
       repo = "nodes";
       rev = "version-${version}";
-      hash = "sha256-+lR/R0l3fGZO3XG7whMorFW2y2YZ0ZFnLeOHyQYrAsQ=";
+      hash = "sha256-cFb9pxcjtkMmH0CsGgUO9LTdXDNh7MCqicgGWawLrsU=";
     };
   };
 
@@ -59,7 +59,6 @@ in
     doCheck = false;
     nativeCheckInputs = [
       clangOmpss2
-      which
     ];
 
     # The "bindnow" flags are incompatible with ifunc resolution mechanism. We
@@ -82,12 +81,4 @@ in
     passthru = {
       inherit nosv;
     };
-
-    meta = {
-      homepage = "https://gitlab.bsc.es/nos-v/nodes";
-      description = "Runtime library designed to work on top of the nOS-V runtime";
-      maintainers = with lib.maintainers.bsc; [ abonerib rarias ];
-      platforms = lib.platforms.linux;
-      license = lib.licenses.gpl3Plus;
-    };
   }

pkgs/nosv/default.nix

@@ -7,25 +7,25 @@
 , numactl
 , hwloc
 , papi
-, enablePapi ? stdenv.hostPlatform == stdenv.buildPlatform # Disabled when cross-compiling
+, enablePapi ? true
 , cacheline ? 64 # bits
 , ovni ? null
 , useGit ? false
 , gitUrl ? "git@gitlab-internal.bsc.es:nos-v/nos-v.git"
 , gitBranch ? "master"
-, gitCommit ? "1108e4786b58e0feb9a16fa093010b763eb2f8e8" # version 4.0.0
+, gitCommit ? "9f47063873c3aa9d6a47482a82c5000a8c813dd8"
 }:
 
 with lib;
 
 let
   release = rec {
-    version = "4.0.0";
+    version = "3.2.0";
     src = fetchFromGitHub {
       owner = "bsc-pm";
       repo = "nos-v";
       rev = "${version}";
-      hash = "sha256-llaq73bd/YxLVKNlMebnUHKa4z3sdcsuDUoVwUxNuw8=";
+      hash = "sha256-yaz92426EM8trdkBJlISmAoG9KJCDTvoAW/HKrasvOw=";
     };
   };
 
@@ -59,12 +59,4 @@ in
       hwloc
       ovni
     ] ++ lib.optionals enablePapi [ papi ];
-
-    meta = {
-      homepage = "https://gitlab.bsc.es/nos-v/nos-v";
-      description = "Tasking library enables the co-execution of multiple applications with system-wide scheduling and a centralized management of resources";
-      maintainers = with lib.maintainers.bsc; [ abonerib rarias ];
-      platforms = lib.platforms.linux;
-      license = lib.licenses.gpl3Plus;
-    };
   }

pkgs/onemath/default.nix

@@ -0,0 +1,84 @@
+{ lib
+, fetchFromGitHub
+, cmake
+, withCFlags
+, intelPackages
+
+, mklSupport ? true
+
+, config
+
+, cudaSupport ? config.cudaSupport
+, cudaPackages ? { }
+
+, rocmSupport ? config.rocmSupport
+, hipTargets ? null # only one target at a time supported
+, rocmPackages ? { }
+}:
+
+let
+  # rocmSupport is not enough, we need a specific target
+  enableHip = rocmSupport && hipTargets != null;
+
+  stdenv = withCFlags (lib.optionals cudaSupport [ "--cuda-path=${cudaPackages.cudatoolkit}" ]) intelPackages.stdenv;
+in
+
+  # at least one backend has to be enabled
+  assert mklSupport || cudaSupport || enableHip;
+
+stdenv.mkDerivation rec {
+  pname = "oneMath";
+  version = "0.8";
+
+  src = fetchFromGitHub {
+    owner = "uxlfoundation";
+    repo = "oneMath";
+    rev = "v${version}";
+    sha256 = "sha256-xK8lKI3oqKlx3xtvdScpMq+HXAuoYCP0BZdkEqnJP5o=";
+  };
+
+  cmakeFlags = [
+    (lib.cmakeBool "ENABLE_MKLCPU_BACKEND"    mklSupport)
+    (lib.cmakeBool "ENABLE_MKLGPU_BACKEND"    mklSupport)
+
+    (lib.cmakeBool "ENABLE_CUBLAS_BACKEND"    cudaSupport)
+    (lib.cmakeBool "ENABLE_CUFFT_BACKEND"     cudaSupport)
+    (lib.cmakeBool "ENABLE_CURAND_BACKEND"    cudaSupport)
+    (lib.cmakeBool "ENABLE_CUSOLVER_BACKEND"  cudaSupport)
+    (lib.cmakeBool "ENABLE_CUSPARSE_BACKEND"  cudaSupport)
+
+    (lib.cmakeBool "ENABLE_ROCBLAS_BACKEND"   enableHip)
+    (lib.cmakeBool "ENABLE_ROCFFT_BACKEND"    enableHip)
+    (lib.cmakeBool "ENABLE_ROCSOLVER_BACKEND" enableHip)
+    (lib.cmakeBool "ENABLE_ROCRAND_BACKEND"   enableHip)
+    (lib.cmakeBool "ENABLE_ROCSPARSE_BACKEND" enableHip)
+
+    (lib.cmakeBool "BUILD_FUNCTIONAL_TESTS" false)
+    (lib.cmakeBool "BUILD_EXAMPLES" false)
+  ] ++ lib.optionals enableHip [
+    (lib.cmakeFeature "HIP_TARGETS" hipTargets)
+  ];
+
+  nativeBuildInputs = [ cmake ];
+  buildInputs = lib.optionals (mklSupport) [
+    intelPackages.mkl
+    intelPackages.tbb
+  ] ++ lib.optionals (enableHip) [
+    rocmPackages.rocmPath
+    rocmPackages.rocblas
+    rocmPackages.rocfft
+    rocmPackages.rocsolver
+    rocmPackages.rocrand
+    rocmPackages.rocsparse
+  ] ++ lib.optionals (cudaSupport) [
+    (lib.getDev cudaPackages.cuda_cudart)
+    cudaPackages.cudatoolkit
+
+    cudaPackages.libcublas
+    cudaPackages.libcurand
+    cudaPackages.libcufft
+    cudaPackages.libcusparse
+    cudaPackages.libcusolver
+  ];
+
+}

pkgs/ovni/default.nix

@@ -7,7 +7,7 @@
 , useGit ? false
 , gitBranch ? "master"
 , gitUrl ? "ssh://git@bscpm04.bsc.es/rarias/ovni.git"
-, gitCommit ? "06432668f346c8bdc1006fabc23e94ccb81b0d8b" # version 1.13.0
+, gitCommit ? "e4f62382076f0cf0b1d08175cf57cc0bc51abc61"
 , enableDebug ? false
 # Only enable MPI if the build is native (fails on cross-compilation)
 , useMpi ? (stdenv.buildPlatform.canExecute stdenv.hostPlatform)
@@ -15,13 +15,13 @@
 
 let
   release = rec {
-    version = "1.13.0";
+    version = "1.12.0";
     src = fetchFromGitHub {
       owner = "bsc-pm";
       repo = "ovni";
       rev = "${version}";
-      hash = "sha256-0l2ryIyWNiZqeYdVlnj/WnQGS3xFCY4ICG8JedX424w=";
+      hash = "sha256-H04JvsVKrdqr3ON7JhU0g17jjlg/jzQ7eTfx9vUNd3E=";
-    } // { shortRev = "0643266"; };
+    } // { shortRev = "a73afcf"; };
   };
 
   git = rec {
@@ -55,13 +55,4 @@ in
     doCheck = true;
     checkTarget = "test";
     hardeningDisable = [ "all" ];
-
-    meta = {
-      homepage = "https://ovni.readthedocs.io";
-      description = "Obtuse but Versatile Nanoscale Instrumentation";
-      maintainers = with lib.maintainers.bsc; [ rarias ];
-      platforms = lib.platforms.linux;
-      license = lib.licenses.gpl3Plus;
-      cross = true;
-    };
   }

pkgs/paraver/default.nix

@@ -1,6 +1,5 @@
 {
   stdenv
-, lib
 , fetchFromGitHub
 , autoreconfHook
 , boost
@@ -89,18 +88,4 @@ stdenv.mkDerivation rec {
     mkdir -p $out/share/man
     mv $out/share/doc/wxparaver_help_contents/man $out/share/man/man1
   '';
-
-  meta = {
-    homepage = "https://tools.bsc.es/paraver";
-    downloadPage = "https://github.com/bsc-performance-tools/wxparaver";
-    description = "Performance analyzer based on event traces";
-    longDescription = ''
-      Trace-based visualization and analysis tool designed to study quantitative
-      detailed metrics and obtain qualitative knowledge of the performance of
-      applications, libraries, processors and whole architectures
-    '';
-    maintainers = with lib.maintainers.bsc; [ rarias ];
-    platforms = lib.platforms.linux;
-    license = lib.licenses.lgpl21Plus;
-  };
 }

pkgs/paraver/kernel.nix

@@ -1,6 +1,5 @@
 {
   stdenv
-, lib
 , fetchFromGitHub
 , autoreconfHook
 , boost
@@ -58,13 +57,4 @@ stdenv.mkDerivation rec {
     xml2
     zlib
   ];
-
-  meta = {
-    homepage = "https://tools.bsc.es/paraver";
-    downloadPage = "https://github.com/bsc-performance-tools/paraver-kernel";
-    description = "Kernel library used by wxparaver";
-    maintainers = with lib.maintainers.bsc; [ rarias ];
-    platforms = lib.platforms.linux;
-    license = lib.licenses.lgpl21Plus;
-  };
 }

pkgs/sonar/default.nix

@@ -1,6 +1,5 @@
 {
   stdenv
-, lib
 , autoreconfHook
 , fetchFromGitHub
 , ovni
@@ -28,12 +27,4 @@ stdenv.mkDerivation rec {
     ovni
     mpi
   ];
-
-  meta = {
-    homepage = "https://github.com/bsc-pm/sonar";
-    description = "Set of runtime libraries which instrument parallel programming models through the ovni instrumentation library";
-    maintainers = with lib.maintainers.bsc; [ rarias ];
-    platforms = lib.platforms.linux;
-    license = lib.licenses.mit;
-  };
 }

pkgs/tagaspi/default.nix

@@ -1,6 +1,5 @@
 {
   stdenv
-, lib
 , fetchFromGitHub
 , automake
 , autoconf
@@ -56,12 +55,4 @@ stdenv.mkDerivation rec {
   ];
 
   hardeningDisable = [ "all" ];
-
-  meta = {
-    homepage = "https://github.com/bsc-pm/tagaspi";
-    description = "Task-Aware GASPI";
-    maintainers = with lib.maintainers.bsc; [ rarias ];
-    platforms = lib.platforms.linux;
-    license = lib.licenses.gpl3Plus;
-  };
 }

pkgs/tampi/default.nix

@@ -61,12 +61,4 @@ in stdenv.mkDerivation {
   configureFlags = optional (enableOvni) "--with-ovni=${ovni}";
   dontDisableStatic = true;
   hardeningDisable = [ "all" ];
-
-  meta = {
-    homepage = "https://github.com/bsc-pm/tampi";
-    description = "Task-Aware MPI";
-    maintainers = with lib.maintainers.bsc; [ rarias ];
-    platforms = lib.platforms.linux;
-    license = lib.licenses.gpl3Plus;
-  };
 }

pkgs/tasycl/default.nix

@@ -0,0 +1,87 @@
+{
+  lib,
+  stdenv,
+  autoconf,
+  automake,
+  autoreconfHook,
+  boost,
+  fetchFromGitHub,
+  gnumake,
+  libtool,
+  withCFlags,
+
+  useIntel ? true,
+  adaptivecpp ? null,
+  intelPackages ? null,
+
+  useGit ? false,
+  gitUrl ? "git@gitlab-internal.bsc.es:task-awareness/tasycl/tasycl.git",
+  gitBranch ? "main",
+  gitCommit ? "78f98dcf60a66e0eaa3b4ebcf55be076bec64825",
+}:
+
+assert !useIntel -> adaptivecpp != null;
+assert useIntel -> intelPackages != null;
+
+let
+  variant = if useIntel then "intel" else "acpp";
+
+  syclStdenv = withCFlags [ "-O3" ] (if useIntel then intelPackages.stdenv else stdenv);
+
+  release = rec {
+    version = "2.1.0";
+    src = fetchFromGitHub {
+      owner = "bsc-pm";
+      repo = "tasycl";
+      rev = version;
+      hash = "sha256-0kXnb0lHeQNHR27GTLbJ8xbiICLU8k2+FqEnnFSrzzo=";
+    };
+  };
+
+  git = rec {
+    version = src.shortRev;
+    src = builtins.fetchGit {
+      url = gitUrl;
+      ref = gitBranch;
+      rev = gitCommit;
+    };
+  };
+
+  source = if (useGit) then git else release;
+
+in
+
+syclStdenv.mkDerivation {
+  pname = "tasycl-${variant}";
+  inherit (source) src version;
+
+  enableParallelBuilding = true;
+  separateDebugInfo = true;
+
+  nativeBuildInputs = [
+    autoreconfHook
+    automake
+    autoconf
+    libtool
+    gnumake
+  ];
+
+  buildInputs = [
+    boost
+  ];
+
+  configureFlags = lib.optionals (!useIntel) [
+    "CXX=${lib.getExe adaptivecpp}"
+  ];
+
+  # add symlinks so we can explicitly link with tasycl-intel / tasycl-acpp
+  postInstall = ''
+    pushd $out/lib
+    for i in libtasycl* ; do
+      ln -s "$i" "''\${i/tasycl/tasycl-${variant}}"
+    done
+    popd
+  '';
+
+  hardeningDisable = [ "all" ];
+}

test/bugs/hwloc.nix

@@ -6,7 +6,6 @@
 
 stdenv.mkDerivation {
   name = "hwloc-test";
-  requiredSystemFeatures = [ "sys-devices" ];
 
   src = ./.;
 
@@ -15,7 +14,7 @@ stdenv.mkDerivation {
   buildPhase = ''
     ls -l /sys
     gcc -lhwloc hwloc.c -o hwloc
-    strace ./hwloc > $out
+    strace ./hwloc
   '';
 
 }

test/compilers/clang-openmp-ld.nix

@@ -23,8 +23,9 @@ in stdenv.mkDerivation {
   dontUnpack = true;
   dontConfigure = true;
 
-  # nOS-V requires access to /sys/devices to request NUMA information
+  # nOS-V requires access to /sys/devices to request NUMA information. It will
-  requiredSystemFeatures = [ "sys-devices" ];
+  # fail to run otherwise, so we disable the sandbox for this test.
+  __noChroot = true;
 
   buildInputs = [ openmp ];
 

test/compilers/clang-openmp-nosv.nix

@@ -36,8 +36,9 @@ in stdenv.mkDerivation {
   dontUnpack = true;
   dontConfigure = true;
 
-  # nOS-V requires access to /sys/devices to request NUMA information
+  # nOS-V requires access to /sys/devices to request NUMA information. It will
-  requiredSystemFeatures = [ "sys-devices" ];
+  # fail to run otherwise, so we disable the sandbox for this test.
+  __noChroot = true;
 
   buildInputs = [ nosv ];
 

test/compilers/clang-openmp.nix

@@ -24,8 +24,9 @@ in stdenv.mkDerivation {
   dontUnpack = true;
   dontConfigure = true;
 
-  # nOS-V requires access to /sys/devices to request NUMA information
+  # nOS-V requires access to /sys/devices to request NUMA information. It will
-  requiredSystemFeatures = [ "sys-devices" ];
+  # fail to run otherwise, so we disable the sandbox for this test.
+  __noChroot = true;
 
   buildPhase = ''
     set -x

test/compilers/hello-sycl.nix

@@ -0,0 +1,55 @@
+{ intelPackages,  writeText, strace }:
+
+let
+  stdenv = intelPackages.stdenv;
+  hello_sycl = writeText "hello.cpp" ''
+    #include <sycl/sycl.hpp>
+
+    class hello_world;
+
+    int main(int argc, char** argv) try {
+        auto device_selector = sycl::default_selector_v;
+
+        sycl::queue queue(device_selector);
+
+        std::cout << "Running on: "
+                  << queue.get_device().get_info<sycl::info::device::name>()
+                  << std::endl;
+
+        queue.submit([&] (sycl::handler& cgh) {
+            auto os = sycl::stream{128, 128, cgh};
+            cgh.single_task<hello_world>([=]() {
+                os << "Hello World! (on device)\n";
+            });
+        });
+
+        return 0;
+    } catch (sycl::exception &e) {
+        std::cout << "SYCL exception: " << e.what() << std::endl;
+        return 0; // we excpect to fail since no devices should be available;
+    }
+  '';
+in
+
+stdenv.mkDerivation {
+  version = "0.0.1";
+  name = "hello-sycl";
+  buildInputs = [ stdenv strace ];
+  src = hello_sycl;
+  dontUnpack = true;
+  dontConfigure = true;
+  NIX_DEBUG = 0;
+  buildPhase = ''
+    cp $src hello.cpp
+    set -x
+    echo CXX=$CXX
+    command -v $CXX
+    $CXX -fsycl hello.cpp -o hello
+    ./hello
+    set +x
+  '';
+
+  installPhase = ''
+    touch $out
+  '';
+}

test/compilers/icpx-ompss2.nix

@@ -0,0 +1,74 @@
+{ writeText, intelPackages, nodes, nosv, clangOmpss2Nodes, strace }:
+
+let
+  hello_cpp = writeText "hello.cpp" ''
+    #include <cstdio>
+    #include <sycl/sycl.hpp>
+
+    int main(int argc, char** argv) try {
+        sycl::queue queue;
+
+        std::cout << "Running on: "
+                  << queue.get_device().get_info<sycl::info::device::name>()
+                  << std::endl;
+
+        #pragma oss task
+        queue.submit([&] (sycl::handler& cgh) {
+            auto os = sycl::stream{128, 128, cgh};
+            cgh.single_task<class hello_world>([=]() {
+                os << "Hello World! (on device)\n";
+            });
+        }).wait();
+
+        return 0;
+    } catch (sycl::exception &e) {
+        std::cout << "SYCL exception: " << e.what() << std::endl;
+        return 0; // we expect to fail since no devices should be available;
+    }
+
+  '';
+in
+
+intelPackages.stdenv.mkDerivation {
+  version = "0.0.1";
+  name = "hello-syclompss";
+
+  src = hello_cpp;
+
+  nativeBuildInputs = [
+    strace
+    nodes
+    nosv
+  ];
+
+  dontUnpack = true;
+  dontConfigure = true;
+
+  # NODES requires access to /sys/devices to request NUMA information
+  requiredSystemFeatures = [ "sys-devices" ];
+
+  env.NODES_HOME = nodes;
+
+  NIX_DEBUG = 1;
+  buildPhase = ''
+    cp $src hello.cpp
+    set -x
+    echo CXX=$CXX
+    echo NODES_HOME=$NODES_HOME
+    command -v $CXX
+
+    icpx -Wno-deprecated-declarations -fsycl \
+        -fsycl-host-compiler=${clangOmpss2Nodes.forIcpx}/bin/clang++ \
+        -fsycl-host-compiler-options='-Wno-deprecated-declarations -fompss-2=libnodes' \
+        -lnodes -lnosv \
+        $NODES_HOME/lib/nodes-main-wrapper.o \
+        hello.cpp -o hello
+
+    ./hello
+    set +x
+  '';
+
+  installPhase = ''
+    touch $out
+  '';
+}

test/compilers/ompss2.nix

@@ -25,10 +25,9 @@ stdenv.mkDerivation rec {
   hardeningDisable = [ "all" ];
   #NIX_DEBUG = 1;
   buildInputs = [ ]; #strace gdb;
-
+  # NODES requires access to /sys/devices to request NUMA information. It will
-  # NODES requires access to /sys/devices to request NUMA information
+  # fail to run otherwise, so we disable the sandbox for this test.
-  requiredSystemFeatures = [ "sys-devices" ];
+  __noChroot = true;
-
   buildPhase = ''
     set -x
     #$CC -v