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86 changed files with 841 additions and 1752 deletions

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@ -150,27 +150,3 @@ And update grub.
```
# nix build .#nixosConfigurations.xeon02.config.system.build.kexecTree -v
```
## Chain NixOS in same disk with other systems
To install NixOS on a partition along another system which controls the GRUB,
first disable the grub device, so the GRUB is not installed in the disk by
NixOS (only the /boot files will be generated):
```
boot.loader.grub.device = "nodev";
```
Then add the following entry to the old GRUB configuration:
```
menuentry 'NixOS' {
insmod chain
search --no-floppy --label nixos --set root
configfile /boot/grub/grub.cfg
}
```
The partition with NixOS must have the label "nixos" for it to be found. New
system configuration entries will be stored in the GRUB configuration managed
by NixOS, so there is no need to change the old GRUB settings.

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@ -6,15 +6,14 @@
"home-manager": "home-manager",
"nixpkgs": [
"nixpkgs"
],
"systems": "systems"
]
},
"locked": {
"lastModified": 1720546205,
"narHash": "sha256-boCXsjYVxDviyzoEyAk624600f3ZBo/DKtUdvMTpbGY=",
"lastModified": 1690228878,
"narHash": "sha256-9Xe7JV0krp4RJC9W9W9WutZVlw6BlHTFMiUP/k48LQY=",
"owner": "ryantm",
"repo": "agenix",
"rev": "de96bd907d5fbc3b14fc33ad37d1b9a3cb15edc6",
"rev": "d8c973fd228949736dedf61b7f8cc1ece3236792",
"type": "github"
},
"original": {
@ -24,23 +23,18 @@
}
},
"bscpkgs": {
"inputs": {
"nixpkgs": [
"nixpkgs"
]
},
"locked": {
"lastModified": 1713974364,
"narHash": "sha256-ilZTVWSaNP1ibhQIIRXE+q9Lj2XOH+F9W3Co4QyY1eU=",
"lastModified": 1690560045,
"narHash": "sha256-39ZP+FIzlWoN3c43hReBYpStg4RLYw/z7TdxCQmOvTM=",
"ref": "refs/heads/master",
"rev": "de89197a4a7b162db7df9d41c9d07759d87c5709",
"revCount": 937,
"rev": "b4a20d7c3af854b39682484adfd1c7979319f439",
"revCount": 841,
"type": "git",
"url": "https://git.sr.ht/~rodarima/bscpkgs"
"url": "https://pm.bsc.es/gitlab/rarias/bscpkgs.git"
},
"original": {
"type": "git",
"url": "https://git.sr.ht/~rodarima/bscpkgs"
"url": "https://pm.bsc.es/gitlab/rarias/bscpkgs.git"
}
},
"darwin": {
@ -51,11 +45,11 @@
]
},
"locked": {
"lastModified": 1700795494,
"narHash": "sha256-gzGLZSiOhf155FW7262kdHo2YDeugp3VuIFb4/GGng0=",
"lastModified": 1673295039,
"narHash": "sha256-AsdYgE8/GPwcelGgrntlijMg4t3hLFJFCRF3tL5WVjA=",
"owner": "lnl7",
"repo": "nix-darwin",
"rev": "4b9b83d5a92e8c1fbfd8eb27eda375908c11ec4d",
"rev": "87b9d090ad39b25b2400029c64825fc2a8868943",
"type": "github"
},
"original": {
@ -73,11 +67,11 @@
]
},
"locked": {
"lastModified": 1703113217,
"narHash": "sha256-7ulcXOk63TIT2lVDSExj7XzFx09LpdSAPtvgtM7yQPE=",
"lastModified": 1682203081,
"narHash": "sha256-kRL4ejWDhi0zph/FpebFYhzqlOBrk0Pl3dzGEKSAlEw=",
"owner": "nix-community",
"repo": "home-manager",
"rev": "3bfaacf46133c037bb356193bd2f1765d9dc82c1",
"rev": "32d3e39c491e2f91152c84f8ad8b003420eab0a1",
"type": "github"
},
"original": {
@ -88,11 +82,11 @@
},
"nixpkgs": {
"locked": {
"lastModified": 1720957393,
"narHash": "sha256-oedh2RwpjEa+TNxhg5Je9Ch6d3W1NKi7DbRO1ziHemA=",
"lastModified": 1692447944,
"narHash": "sha256-fkJGNjEmTPvqBs215EQU4r9ivecV5Qge5cF/QDLVn3U=",
"owner": "NixOS",
"repo": "nixpkgs",
"rev": "693bc46d169f5af9c992095736e82c3488bf7dbb",
"rev": "d680ded26da5cf104dd2735a51e88d2d8f487b4d",
"type": "github"
},
"original": {
@ -108,21 +102,6 @@
"bscpkgs": "bscpkgs",
"nixpkgs": "nixpkgs"
}
},
"systems": {
"locked": {
"lastModified": 1681028828,
"narHash": "sha256-Vy1rq5AaRuLzOxct8nz4T6wlgyUR7zLU309k9mBC768=",
"owner": "nix-systems",
"repo": "default",
"rev": "da67096a3b9bf56a91d16901293e51ba5b49a27e",
"type": "github"
},
"original": {
"owner": "nix-systems",
"repo": "default",
"type": "github"
}
}
},
"root": "root",

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@ -3,8 +3,7 @@
nixpkgs.url = "github:NixOS/nixpkgs/nixos-unstable";
agenix.url = "github:ryantm/agenix";
agenix.inputs.nixpkgs.follows = "nixpkgs";
bscpkgs.url = "git+https://git.sr.ht/~rodarima/bscpkgs";
bscpkgs.inputs.nixpkgs.follows = "nixpkgs";
bscpkgs.url = "git+https://pm.bsc.es/gitlab/rarias/bscpkgs.git";
};
outputs = { self, nixpkgs, agenix, bscpkgs, ... }:
@ -17,19 +16,15 @@ let
in
{
nixosConfigurations = {
hut = mkConf "hut";
owl1 = mkConf "owl1";
owl2 = mkConf "owl2";
eudy = mkConf "eudy";
koro = mkConf "koro";
bay = mkConf "bay";
lake2 = mkConf "lake2";
raccoon = mkConf "raccoon";
hut = mkConf "hut";
owl1 = mkConf "owl1";
owl2 = mkConf "owl2";
eudy = mkConf "eudy";
koro = mkConf "koro";
bay = mkConf "bay";
lake2 = mkConf "lake2";
};
packages.x86_64-linux = self.nixosConfigurations.hut.pkgs // {
bscpkgs = bscpkgs.packages.x86_64-linux;
nixpkgs = nixpkgs.legacyPackages.x86_64-linux;
};
packages.x86_64-linux.hut = self.nixosConfigurations.hut.pkgs;
};
}

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@ -1,29 +0,0 @@
# As agenix needs to parse the secrets from a standalone .nix file, we describe
# here all the public keys
rec {
hosts = {
hut = "ssh-ed25519 AAAAC3NzaC1lZDI1NTE5AAAAICO7jIp6JRnRWTMDsTB/aiaICJCl4x8qmKMPSs4lCqP1 hut";
owl1 = "ssh-ed25519 AAAAC3NzaC1lZDI1NTE5AAAAIMqMEXO0ApVsBA6yjmb0xP2kWyoPDIWxBB0Q3+QbHVhv owl1";
owl2 = "ssh-ed25519 AAAAC3NzaC1lZDI1NTE5AAAAIHurEYpQzNHqWYF6B9Pd7W8UPgF3BxEg0BvSbsA7BAdK owl2";
eudy = "ssh-ed25519 AAAAC3NzaC1lZDI1NTE5AAAAIL+WYPRRvZupqLAG0USKmd/juEPmisyyJaP8hAgYwXsG eudy";
koro = "ssh-ed25519 AAAAC3NzaC1lZDI1NTE5AAAAIImiTFDbxyUYPumvm8C4mEnHfuvtBY1H8undtd6oDd67 koro";
bay = "ssh-ed25519 AAAAC3NzaC1lZDI1NTE5AAAAICvGBzpRQKuQYHdlUQeAk6jmdbkrhmdLwTBqf3el7IgU bay";
lake2 = "ssh-ed25519 AAAAC3NzaC1lZDI1NTE5AAAAINo66//S1yatpQHE/BuYD/Gfq64TY7ZN5XOGXmNchiO0 lake2";
};
hostGroup = with hosts; rec {
compute = [ owl1 owl2 ];
playground = [ eudy koro ];
storage = [ bay lake2 ];
monitor = [ hut ];
system = storage ++ monitor;
safe = system ++ compute;
all = safe ++ playground;
};
admins = {
rarias = "ssh-ed25519 AAAAC3NzaC1lZDI1NTE5AAAAIE1oZTPtlEXdGt0Ak+upeCIiBdaDQtcmuWoTUCVuSVIR rarias@hut";
root = "ssh-ed25519 AAAAC3NzaC1lZDI1NTE5AAAAIII/1TNArcwA6D47mgW4TArwlxQRpwmIGiZDysah40Gb root@hut";
};
}

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@ -2,21 +2,21 @@
{
imports = [
../common/xeon.nix
../module/monitoring.nix
../common/main.nix
../common/monitoring.nix
];
# Select the this using the ID to avoid mismatches
boot.loader.grub.device = "/dev/disk/by-id/wwn-0x55cd2e414d53562d";
boot.kernel.sysctl = {
"kernel.yama.ptrace_scope" = lib.mkForce "1";
};
environment.systemPackages = with pkgs; [
ceph
];
services.slurm = {
client.enable = lib.mkForce false;
};
networking = {
hostName = "bay";
interfaces.eno1.ipv4.addresses = [ {
@ -27,25 +27,16 @@
address = "10.0.42.40";
prefixLength = 24;
} ];
firewall = {
extraCommands = ''
# Accept all incoming TCP traffic from lake2
iptables -A nixos-fw -p tcp -s lake2 -j nixos-fw-accept
# Accept monitoring requests from hut
iptables -A nixos-fw -p tcp -s hut -m multiport --dport 9283,9002 -j nixos-fw-accept
# Accept all Ceph traffic from the local network
iptables -A nixos-fw -p tcp -s 10.0.40.0/24 -m multiport --dport 3300,6789,6800:7568 -j nixos-fw-accept
'';
};
};
services.ceph = {
enable = true;
global = {
fsid = "9c8d06e0-485f-4aaf-b16b-06d6daf1232b";
monHost = "10.0.40.40";
monInitialMembers = "bay";
clusterNetwork = "10.0.40.40/24"; # Use Ethernet only
monHost = "10.0.42.40";
monInitialMembers = "10.0.42.40";
publicNetwork = "10.0.42.40/24";
clusterNetwork = "10.0.42.40/24";
};
extraConfig = {
# Only log to stderr so it appears in the journal
@ -59,7 +50,7 @@
enable = true;
daemons = [ "mds0" "mds1" ];
extraConfig = {
"host" = "bay";
"host" = "10.0.42.40";
};
};
mgr = {

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@ -1,20 +0,0 @@
{
# All machines should include this profile.
# Includes the basic configuration for an Intel server.
imports = [
./base/agenix.nix
./base/august-shutdown.nix
./base/boot.nix
./base/env.nix
./base/fs.nix
./base/hw.nix
./base/net.nix
./base/nix.nix
./base/ntp.nix
./base/rev.nix
./base/ssh.nix
./base/users.nix
./base/watchdog.nix
./base/zsh.nix
];
}

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@ -1,9 +0,0 @@
{ agenix, ... }:
{
imports = [ agenix.nixosModules.default ];
environment.systemPackages = [
agenix.packages.x86_64-linux.default
];
}

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@ -1,14 +0,0 @@
{
# Shutdown all machines on August 2nd at 11:00 AM, so we can protect the
# hardware from spurious electrical peaks on the yearly electrical cut for
# manteinance that starts on August 4th.
systemd.timers.august-shutdown = {
description = "Shutdown on August 2nd for maintenance";
wantedBy = [ "timers.target" ];
timerConfig = {
OnCalendar = "*-08-02 11:00:00";
RandomizedDelaySec = "10min";
Unit = "systemd-poweroff.service";
};
};
}

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@ -1,35 +0,0 @@
{ pkgs, config, ... }:
{
environment.systemPackages = with pkgs; [
vim wget git htop tmux pciutils tcpdump ripgrep nix-index nixos-option
nix-diff ipmitool freeipmi ethtool lm_sensors ix cmake gnumake file tree
ncdu config.boot.kernelPackages.perf ldns
# From bsckgs overlay
osumb
];
programs.direnv.enable = true;
# Increase limits
security.pam.loginLimits = [
{
domain = "*";
type = "-";
item = "memlock";
value = "1048576"; # 1 GiB of mem locked
}
];
environment.variables = {
EDITOR = "vim";
VISUAL = "vim";
};
programs.bash.promptInit = ''
PS1="\h\\$ "
'';
time.timeZone = "Europe/Madrid";
i18n.defaultLocale = "en_DK.UTF-8";
}

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@ -1,19 +0,0 @@
{ pkgs, ... }:
{
networking = {
enableIPv6 = false;
useDHCP = false;
firewall = {
enable = true;
allowedTCPPorts = [ 22 ];
};
hosts = {
"84.88.53.236" = [ "ssfhead.bsc.es" "ssfhead" ];
"84.88.51.152" = [ "raccoon" ];
"84.88.51.142" = [ "raccoon-ipmi" ];
};
};
}

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@ -1,57 +0,0 @@
{ pkgs, nixpkgs, bscpkgs, theFlake, ... }:
{
nixpkgs.overlays = [
bscpkgs.bscOverlay
(import ../../../pkgs/overlay.nix)
];
nix = {
nixPath = [
"nixpkgs=${nixpkgs}"
"jungle=${theFlake.outPath}"
];
registry = {
nixpkgs.flake = nixpkgs;
jungle.flake = theFlake;
};
settings = {
experimental-features = [ "nix-command" "flakes" ];
sandbox = "relaxed";
trusted-users = [ "@wheel" ];
flake-registry = pkgs.writeText "global-registry.json"
''{"flakes":[],"version":2}'';
};
gc = {
automatic = true;
dates = "weekly";
options = "--delete-older-than 30d";
};
};
# The nix-gc.service can begin its execution *before* /home is mounted,
# causing it to remove all gcroots considering them as stale, as it cannot
# access the symlink. To prevent this problem, we force the service to wait
# until /home is mounted as well as other remote FS like /ceph.
systemd.services.nix-gc = {
# Start remote-fs.target if not already being started and fail if it fails
# to start. It will also be stopped if the remote-fs.target fails after
# starting successfully.
bindsTo = [ "remote-fs.target" ];
# Wait until remote-fs.target fully starts before starting this one.
after = [ "remote-fs.target"];
# Ensure we can access a remote path inside /home
unitConfig.ConditionPathExists = "/home/Computational";
};
# This value determines the NixOS release from which the default
# settings for stateful data, like file locations and database versions
# on your system were taken. Its perfectly fine and recommended to leave
# this value at the release version of the first install of this system.
# Before changing this value read the documentation for this option
# (e.g. man configuration.nix or on https://nixos.org/nixos/options.html).
system.stateVersion = "22.11"; # Did you read the comment?
}

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@ -1,21 +0,0 @@
{ theFlake, ... }:
let
# Prevent building a configuration without revision
rev = if theFlake ? rev then theFlake.rev
else throw ("Refusing to build from a dirty Git tree!");
in {
# Save the commit of the config in /etc/configrev
environment.etc.configrev.text = rev + "\n";
# Keep a log with the config over time
system.activationScripts.configRevLog.text = ''
BOOTED=$(cat /run/booted-system/etc/configrev 2>/dev/null || echo unknown)
CURRENT=$(cat /run/current-system/etc/configrev 2>/dev/null || echo unknown)
NEXT=${rev}
DATENOW=$(date --iso-8601=seconds)
echo "$DATENOW booted=$BOOTED current=$CURRENT next=$NEXT" >> /var/configrev.log
'';
system.configurationRevision = rev;
}

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@ -1,22 +0,0 @@
{ lib, ... }:
let
keys = import ../../../keys.nix;
hostsKeys = lib.mapAttrs (name: value: { publicKey = value; }) keys.hosts;
in
{
# Enable the OpenSSH daemon.
services.openssh.enable = true;
# Connect to intranet git hosts via proxy
programs.ssh.extraConfig = ''
Host bscpm02.bsc.es bscpm03.bsc.es gitlab-internal.bsc.es alya.gitlab.bsc.es
User git
ProxyCommand nc -X connect -x hut:23080 %h %p
'';
programs.ssh.knownHosts = hostsKeys // {
"gitlab-internal.bsc.es".publicKey = "ssh-ed25519 AAAAC3NzaC1lZDI1NTE5AAAAIF9arsAOSRB06hdy71oTvJHG2Mg8zfebADxpvc37lZo3";
"bscpm03.bsc.es".publicKey = "ssh-ed25519 AAAAC3NzaC1lZDI1NTE5AAAAIM2NuSUPsEhqz1j5b4Gqd+MWFnRqyqY57+xMvBUqHYUS";
};
}

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@ -1,91 +0,0 @@
{ pkgs, ... }:
{
environment.systemPackages = with pkgs; [
zsh-completions
nix-zsh-completions
];
programs.zsh = {
enable = true;
histSize = 1000000;
shellInit = ''
# Disable new user prompt
if [ ! -e ~/.zshrc ]; then
touch ~/.zshrc
fi
'';
promptInit = ''
# Note that to manually override this in ~/.zshrc you should run `prompt off`
# before setting your PS1 and etc. Otherwise this will likely to interact with
# your ~/.zshrc configuration in unexpected ways as the default prompt sets
# a lot of different prompt variables.
autoload -U promptinit && promptinit && prompt default && setopt prompt_sp
'';
# Taken from Ulli Kehrle config:
# https://git.hrnz.li/Ulli/nixos/src/commit/2e203b8d8d671f4e3ced0f1744a51d5c6ee19846/profiles/shell.nix#L199-L205
interactiveShellInit = ''
source "${pkgs.zsh-history-substring-search}/share/zsh-history-substring-search/zsh-history-substring-search.zsh"
# Save history immediately, but only load it when the shell starts
setopt inc_append_history
# dircolors doesn't support alacritty:
# https://lists.gnu.org/archive/html/bug-coreutils/2019-05/msg00029.html
export LS_COLORS='rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=00:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=00;36:*.au=00;36:*.flac=00;36:*.m4a=00;36:*.mid=00;36:*.midi=00;36:*.mka=00;36:*.mp3=00;36:*.mpc=00;36:*.ogg=00;36:*.ra=00;36:*.wav=00;36:*.oga=00;36:*.opus=00;36:*.spx=00;36:*.xspf=00;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90:';
# From Arch Linux and GRML
bindkey "^R" history-incremental-pattern-search-backward
bindkey "^S" history-incremental-pattern-search-forward
# Auto rehash for new binaries
zstyle ':completion:*' rehash true
# show a nice menu with the matches
zstyle ':completion:*' menu yes select
bindkey '^[OA' history-substring-search-up # Up
bindkey '^[[A' history-substring-search-up # Up
bindkey '^[OB' history-substring-search-down # Down
bindkey '^[[B' history-substring-search-down # Down
bindkey '\e[1~' beginning-of-line # Home
bindkey '\e[7~' beginning-of-line # Home
bindkey '\e[H' beginning-of-line # Home
bindkey '\eOH' beginning-of-line # Home
bindkey '\e[4~' end-of-line # End
bindkey '\e[8~' end-of-line # End
bindkey '\e[F ' end-of-line # End
bindkey '\eOF' end-of-line # End
bindkey '^?' backward-delete-char # Backspace
bindkey '\e[3~' delete-char # Del
# bindkey '\e[3;5~' delete-char # sometimes Del, sometimes C-Del
bindkey '\e[2~' overwrite-mode # Ins
bindkey '^H' backward-kill-word # C-Backspace
bindkey '5~' kill-word # C-Del
bindkey '^[[3;5~' kill-word # C-Del
bindkey '^[[3^' kill-word # C-Del
bindkey "^[[1;5H" backward-kill-line # C-Home
bindkey "^[[7^" backward-kill-line # C-Home
bindkey "^[[1;5F" kill-line # C-End
bindkey "^[[8^" kill-line # C-End
bindkey '^[[1;5C' forward-word # C-Right
bindkey '^[0c' forward-word # C-Right
bindkey '^[[5C' forward-word # C-Right
bindkey '^[[1;5D' backward-word # C-Left
bindkey '^[0d' backward-word # C-Left
bindkey '^[[5D' backward-word # C-Left
'';
};
}

View File

@ -2,7 +2,7 @@
{
# Use the GRUB 2 boot loader.
boot.loader.grub.enable = true;
boot.loader.grub.enable = lib.mkForce true;
# Enable GRUB2 serial console
boot.loader.grub.extraConfig = ''
@ -11,12 +11,14 @@
terminal_output --append serial
'';
# Enable serial console
boot.kernelParams = [
"console=tty1"
"console=ttyS0,115200"
];
boot.kernel.sysctl = {
"kernel.perf_event_paranoid" = lib.mkDefault "-1";
# Allow ptracing (i.e. attach with GDB) any process of the same user, see:
# https://www.kernel.org/doc/Documentation/security/Yama.txt
"kernel.yama.ptrace_scope" = "0";
};
boot.kernelPackages = pkgs.linuxPackages_latest;

View File

@ -6,19 +6,20 @@
fsType = "ext4";
};
# Trim unused blocks weekly
services.fstrim.enable = true;
swapDevices =
[ { device = "/dev/disk/by-label/swap"; }
];
# Mount the home via NFS
fileSystems."/home" = {
device = "10.0.40.30:/home";
fsType = "nfs";
options = [ "nfsvers=3" "rsize=1024" "wsize=1024" "cto" "nofail" ];
};
# Tracing
fileSystems."/sys/kernel/tracing" = {
device = "none";
fsType = "tracefs";
};
# Mount a tmpfs into /tmp
boot.tmp.useTmpfs = true;
}

94
m/common/main.nix Normal file
View File

@ -0,0 +1,94 @@
{ config, pkgs, nixpkgs, bscpkgs, agenix, theFlake, ... }:
{
imports = [
./boot.nix
./fs.nix
./hw.nix
./net.nix
./ntp.nix
./slurm.nix
./ssh.nix
./users.nix
./watchdog.nix
];
nixpkgs.overlays = [
bscpkgs.bscOverlay
(import ../../pkgs/overlay.nix)
];
nix.nixPath = [
"nixpkgs=${nixpkgs}"
"bscpkgs=${bscpkgs}"
"jungle=${theFlake.outPath}"
];
nix.registry.nixpkgs.flake = nixpkgs;
nix.registry.bscpkgs.flake = bscpkgs;
nix.registry.jungle.flake = theFlake;
system.configurationRevision =
if theFlake ? rev
then theFlake.rev
else throw ("Refusing to build from a dirty Git tree!");
environment.systemPackages = with pkgs; [
vim wget git htop tmux pciutils tcpdump ripgrep nix-index nixos-option
nix-diff ipmitool freeipmi ethtool lm_sensors ix cmake gnumake file tree
ncdu config.boot.kernelPackages.perf ldns
# From bsckgs overlay
bsc.osumb
];
systemd.services."serial-getty@ttyS0" = {
enable = true;
wantedBy = [ "getty.target" ];
serviceConfig.Restart = "always";
};
# Increase limits
security.pam.loginLimits = [
{
domain = "*";
type = "-";
item = "memlock";
value = "1048576"; # 1 GiB of mem locked
}
];
time.timeZone = "Europe/Madrid";
i18n.defaultLocale = "en_DK.UTF-8";
environment.variables = {
EDITOR = "vim";
VISUAL = "vim";
};
nix.settings.experimental-features = [ "nix-command" "flakes" ];
nix.settings.sandbox = "relaxed";
nix.settings.trusted-users = [ "@wheel" ];
nix.gc.automatic = true;
nix.gc.dates = "weekly";
nix.gc.options = "--delete-older-than 30d";
programs.zsh.enable = true;
programs.zsh.histSize = 100000;
programs.bash.promptInit = ''
PS1="\h\\$ "
'';
# Copy the NixOS configuration file and link it from the resulting system
# (/run/current-system/configuration.nix). This is useful in case you
# accidentally delete configuration.nix.
#system.copySystemConfiguration = true;
# This value determines the NixOS release from which the default
# settings for stateful data, like file locations and database versions
# on your system were taken. Its perfectly fine and recommended to leave
# this value at the release version of the first install of this system.
# Before changing this value read the documentation for this option
# (e.g. man configuration.nix or on https://nixos.org/nixos/options.html).
system.stateVersion = "22.11"; # Did you read the comment?
}

View File

@ -6,11 +6,12 @@
boot.kernelModules = [ "ib_umad" "ib_ipoib" ];
networking = {
enableIPv6 = false;
useDHCP = false;
defaultGateway = "10.0.40.30";
nameservers = ["8.8.8.8"];
proxy = {
default = "http://hut:23080/";
default = "http://localhost:23080/";
noProxy = "127.0.0.1,localhost,internal.domain,10.0.40.40";
# Don't set all_proxy as go complains and breaks the gitlab runner, see:
# https://github.com/golang/go/issues/16715
@ -18,23 +19,21 @@
};
firewall = {
extraCommands = ''
# Prevent ssfhead from contacting our slurmd daemon
iptables -A nixos-fw -p tcp -s ssfhead --dport 6817:6819 -j nixos-fw-refuse
# But accept traffic to slurm ports from any other node in the subnet
iptables -A nixos-fw -p tcp -s 10.0.40.0/24 --dport 6817:6819 -j nixos-fw-accept
# We also need to open the srun port range
iptables -A nixos-fw -p tcp -s 10.0.40.0/24 --dport 60000:61000 -j nixos-fw-accept
'';
enable = true;
allowedTCPPorts = [ 22 ];
# FIXME: For slurmd as it requests the compute nodes to connect to us
allowedTCPPortRanges = [ { from=1024; to=65535; } ];
};
extraHosts = ''
10.0.40.30 ssfhead
10.0.40.30 ssfhead
84.88.53.236 ssfhead.bsc.es ssfhead
# Node Entry for node: mds01 (ID=72)
10.0.40.40 bay mds01 mds01-eth0
10.0.42.40 bay-ib mds01-ib0
10.0.40.141 bay-ipmi mds01-ipmi0
10.0.42.40 mds01-ib0
10.0.40.141 mds01-ipmi0
# Node Entry for node: oss01 (ID=73)
10.0.40.41 oss01 oss01-eth0
@ -43,18 +42,18 @@
# Node Entry for node: oss02 (ID=74)
10.0.40.42 lake2 oss02 oss02-eth0
10.0.42.42 lake2-ib oss02-ib0
10.0.40.143 lake2-ipmi oss02-ipmi0
10.0.42.42 oss02-ib0
10.0.40.143 oss02-ipmi0
# Node Entry for node: xeon01 (ID=15)
10.0.40.1 owl1 xeon01 xeon01-eth0
10.0.42.1 owl1-ib xeon01-ib0
10.0.40.101 owl1-ipmi xeon01-ipmi0
10.0.42.1 xeon01-ib0
10.0.40.101 xeon01-ipmi0
# Node Entry for node: xeon02 (ID=16)
10.0.40.2 owl2 xeon02 xeon02-eth0
10.0.42.2 owl2-ib xeon02-ib0
10.0.40.102 owl2-ipmi xeon02-ipmi0
10.0.42.2 xeon02-ib0
10.0.40.102 xeon02-ipmi0
# Node Entry for node: xeon03 (ID=17)
10.0.40.3 xeon03 xeon03-eth0
@ -68,8 +67,8 @@
# Node Entry for node: xeon05 (ID=19)
10.0.40.5 koro xeon05 xeon05-eth0
10.0.42.5 koro-ib xeon05-ib0
10.0.40.105 koro-ipmi xeon05-ipmi0
10.0.42.5 xeon05-ib0
10.0.40.105 xeon05-ipmi0
# Node Entry for node: xeon06 (ID=20)
10.0.40.6 xeon06 xeon06-eth0
@ -78,13 +77,13 @@
# Node Entry for node: xeon07 (ID=21)
10.0.40.7 hut xeon07 xeon07-eth0
10.0.42.7 hut-ib xeon07-ib0
10.0.40.107 hut-ipmi xeon07-ipmi0
10.0.42.7 xeon07-ib0
10.0.40.107 xeon07-ipmi0
# Node Entry for node: xeon08 (ID=22)
10.0.40.8 eudy xeon08 xeon08-eth0
10.0.42.8 eudy-ib xeon08-ib0
10.0.40.108 eudy-ipmi xeon08-ipmi0
10.0.42.8 xeon08-ib0
10.0.40.108 xeon08-ipmi0
'';
};
}

42
m/common/slurm.nix Normal file
View File

@ -0,0 +1,42 @@
{ lib, ... }:
{
systemd.services.slurmd.serviceConfig = {
# Kill all processes in the control group on stop/restart. This will kill
# all the jobs running, so ensure that we only upgrade when the nodes are
# not in use. See:
# https://github.com/NixOS/nixpkgs/commit/ae93ed0f0d4e7be0a286d1fca86446318c0c6ffb
# https://bugs.schedmd.com/show_bug.cgi?id=2095#c24
KillMode = lib.mkForce "control-group";
};
services.slurm = {
client.enable = true;
controlMachine = "hut";
clusterName = "jungle";
nodeName = [
"owl[1,2] Sockets=2 CoresPerSocket=14 ThreadsPerCore=2 Feature=owl"
"hut Sockets=2 CoresPerSocket=14 ThreadsPerCore=2"
];
# See slurm.conf(5) for more details about these options.
extraConfig = ''
# Use PMIx for MPI by default. It works okay with MPICH and OpenMPI, but
# not with Intel MPI. For that use the compatibility shim libpmi.so
# setting I_MPI_PMI_LIBRARY=$pmix/lib/libpmi.so while maintaining the PMIx
# library in SLURM (--mpi=pmix). See more details here:
# https://pm.bsc.es/gitlab/rarias/jungle/-/issues/16
MpiDefault=pmix
# When a node reboots return that node to the slurm queue as soon as it
# becomes operative again.
ReturnToService=2
# Track all processes by using a cgroup
ProctrackType=proctrack/cgroup
# Enable task/affinity to allow the jobs to run in a specified subset of
# the resources. Use the task/cgroup plugin to enable process containment.
TaskPlugin=task/affinity,task/cgroup
'';
};
}

24
m/common/ssh.nix Normal file
View File

@ -0,0 +1,24 @@
{ ... }:
{
# Enable the OpenSSH daemon.
services.openssh.enable = true;
# Connect to intranet git hosts via proxy
programs.ssh.extraConfig = ''
Host bscpm02.bsc.es bscpm03.bsc.es gitlab-internal.bsc.es alya.gitlab.bsc.es
User git
ProxyCommand nc -X connect -x localhost:23080 %h %p
'';
programs.ssh.knownHosts = {
"hut".publicKey = "ssh-ed25519 AAAAC3NzaC1lZDI1NTE5AAAAICO7jIp6JRnRWTMDsTB/aiaICJCl4x8qmKMPSs4lCqP1";
"owl1".publicKey = "ssh-ed25519 AAAAC3NzaC1lZDI1NTE5AAAAIMqMEXO0ApVsBA6yjmb0xP2kWyoPDIWxBB0Q3+QbHVhv";
"owl2".publicKey = "ssh-ed25519 AAAAC3NzaC1lZDI1NTE5AAAAIHurEYpQzNHqWYF6B9Pd7W8UPgF3BxEg0BvSbsA7BAdK";
"eudy".publicKey = "ssh-ed25519 AAAAC3NzaC1lZDI1NTE5AAAAIL+WYPRRvZupqLAG0USKmd/juEPmisyyJaP8hAgYwXsG";
"koro".publicKey = "ssh-ed25519 AAAAC3NzaC1lZDI1NTE5AAAAIImiTFDbxyUYPumvm8C4mEnHfuvtBY1H8undtd6oDd67";
"gitlab-internal.bsc.es".publicKey = "ssh-ed25519 AAAAC3NzaC1lZDI1NTE5AAAAIF9arsAOSRB06hdy71oTvJHG2Mg8zfebADxpvc37lZo3";
"bscpm03.bsc.es".publicKey = "ssh-ed25519 AAAAC3NzaC1lZDI1NTE5AAAAIM2NuSUPsEhqz1j5b4Gqd+MWFnRqyqY57+xMvBUqHYUS";
};
}

View File

@ -1,10 +1,6 @@
{ pkgs, ... }:
{ ... }:
{
imports = [
../../module/jungle-users.nix
];
users = {
mutableUsers = false;
users = {
@ -30,7 +26,6 @@
"ssh-ed25519 AAAAC3NzaC1lZDI1NTE5AAAAINa0tvnNgwkc5xOwd6xTtaIdFi5jv0j2FrE7jl5MTLoE ram@mio"
"ssh-ed25519 AAAAC3NzaC1lZDI1NTE5AAAAIGYcXIxe0poOEGLpk8NjiRozls7fMRX0N3j3Ar94U+Gl rarias@hal"
];
shell = pkgs.zsh;
};
arocanon = {
@ -46,73 +41,18 @@
"ssh-ed25519 AAAAC3NzaC1lZDI1NTE5AAAAIGdphWxLAEekicZ/WBrvP7phMyxKSSuLAZBovNX+hZXQ aleix@kerneland"
];
};
};
jungleUsers = {
rpenacob = {
uid = 2761;
isNormalUser = true;
home = "/home/Computational/rpenacob";
description = "Raúl Peñacoba";
group = "Computational";
hosts = [ "owl1" "owl2" "hut" ];
hashedPassword = "$6$TZm3bDIFyPrMhj1E$uEDXoYYd1z2Wd5mMPfh3DZAjP7ztVjJ4ezIcn82C0ImqafPA.AnTmcVftHEzLB3tbe2O4SxDyPSDEQgJ4GOtj/";
openssh.authorizedKeys.keys = [
"ssh-ed25519 AAAAC3NzaC1lZDI1NTE5AAAAIFYfXg37mauGeurqsLpedgA2XQ9d4Nm0ZGo/hI1f7wwH rpenacob@bsc"
];
};
anavarro = {
uid = 1037;
isNormalUser = true;
home = "/home/Computational/anavarro";
description = "Antoni Navarro";
group = "Computational";
hosts = [ "hut" "raccoon" ];
hashedPassword = "$6$QdNDsuLehoZTYZlb$CDhCouYDPrhoiB7/seu7RF.Gqg4zMQz0n5sA4U1KDgHaZOxy2as9pbIGeF8tOHJKRoZajk5GiaZv0rZMn7Oq31";
openssh.authorizedKeys.keys = [
"ssh-ed25519 AAAAC3NzaC1lZDI1NTE5AAAAILWjRSlKgzBPZQhIeEtk6Lvws2XNcYwHcwPv4osSgst5 anavarro@ssfhead"
];
};
abonerib = {
uid = 4541;
isNormalUser = true;
home = "/home/Computational/abonerib";
description = "Aleix Boné";
group = "Computational";
hosts = [ "owl1" "owl2" "hut" "raccoon" ];
hashedPassword = "$6$V1EQWJr474whv7XJ$OfJ0wueM2l.dgiJiiah0Tip9ITcJ7S7qDvtSycsiQ43QBFyP4lU0e0HaXWps85nqB4TypttYR4hNLoz3bz662/";
openssh.authorizedKeys.keys = [
"ssh-ed25519 AAAAC3NzaC1lZDI1NTE5AAAAIIIFiqXqt88VuUfyANkZyLJNiuroIITaGlOOTMhVDKjf abonerib@bsc"
];
};
vlopez = {
uid = 4334;
isNormalUser = true;
home = "/home/Computational/vlopez";
description = "Victor López";
group = "Computational";
hosts = [ "koro" ];
hashedPassword = "$6$0ZBkgIYE/renVqtt$1uWlJsb0FEezRVNoETTzZMx4X2SvWiOsKvi0ppWCRqI66S6TqMBXBdP4fcQyvRRBt0e4Z7opZIvvITBsEtO0f0";
openssh.authorizedKeys.keys = [
"ssh-ed25519 AAAAC3NzaC1lZDI1NTE5AAAAIGMwlUZRf9jfG666Qa5Sb+KtEhXqkiMlBV2su3x/dXHq victor@arch"
];
};
dbautist = {
uid = 5649;
isNormalUser = true;
home = "/home/Computational/dbautist";
description = "Dylan Bautista Cases";
group = "Computational";
hosts = [ "hut" ];
hashedPassword = "$6$a2lpzMRVkG9nSgIm$12G6.ka0sFX1YimqJkBAjbvhRKZ.Hl090B27pdbnQOW0wzyxVWySWhyDDCILjQELky.HKYl9gqOeVXW49nW7q/";
openssh.authorizedKeys.keys = [
"ssh-ed25519 AAAAC3NzaC1lZDI1NTE5AAAAIAb+EQBoS98zrCwnGKkHKwMLdYABMTqv7q9E0+T0QmkS dbautist@bsc-848818791"
];
};
};
groups = {

View File

@ -1,9 +0,0 @@
{
# Provides the base system for a xeon node.
imports = [
./base.nix
./xeon/fs.nix
./xeon/console.nix
./xeon/net.nix
];
}

View File

@ -1,14 +0,0 @@
{
# Restart the serial console
systemd.services."serial-getty@ttyS0" = {
enable = true;
wantedBy = [ "getty.target" ];
serviceConfig.Restart = "always";
};
# Enable serial console
boot.kernelParams = [
"console=tty1"
"console=ttyS0,115200"
];
}

View File

@ -1,8 +0,0 @@
{
# Mount the home via NFS
fileSystems."/home" = {
device = "10.0.40.30:/home";
fsType = "nfs";
options = [ "nfsvers=3" "rsize=1024" "wsize=1024" "cto" "nofail" ];
};
}

View File

@ -2,14 +2,14 @@
{
imports = [
../common/xeon.nix
../common/main.nix
#(modulesPath + "/installer/netboot/netboot-minimal.nix")
./kernel/kernel.nix
./cpufreq.nix
./fs.nix
./users.nix
../module/debuginfod.nix
./slurm.nix
];
# Select this using the ID to avoid mismatches

View File

@ -21,9 +21,9 @@ let
# configfile = if lockdep then ./configs/lockdep else ./configs/defconfig;
#};
kernel = nixos-fcs;
kernel = nixos-fcsv3;
nixos-fcs-kernel = lib.makeOverridable ({gitCommit, lockStat ? false, preempt ? false, branch ? "fcs"}: pkgs.linuxPackagesFor (pkgs.buildLinux rec {
nixos-fcs-kernel = {gitCommit, lockStat ? false, preempt ? false, branch ? "fcs"}: pkgs.linuxPackagesFor (pkgs.buildLinux rec {
version = "6.2.8";
src = builtins.fetchGit {
url = "git@bscpm03.bsc.es:ompss-kernel/linux.git";
@ -40,13 +40,35 @@ let
};
kernelPatches = [];
extraMeta.branch = lib.versions.majorMinor version;
}));
});
nixos-fcs = nixos-fcs-kernel {gitCommit = "8a09822dfcc8f0626b209d6d2aec8b5da459dfee";};
nixos-fcs-lockstat = nixos-fcs.override {
nixos-fcsv1 = nixos-fcs-kernel {gitCommit = "bc11660676d3d68ce2459b9fb5d5e654e3f413be";};
nixos-fcsv2 = nixos-fcs-kernel {gitCommit = "db0f2eca0cd57a58bf456d7d2c7d5d8fdb25dfb1";};
nixos-fcsv3 = nixos-fcs-kernel {gitCommit = "6c17394890704c3345ac1a521bb547164b36b154";};
# always use fcs_sched_setaffinity
#nixos-debug = nixos-fcs-kernel {gitCommit = "7d0bf285fca92badc8df3c9907a9ab30db4418aa";};
# remove need_check_cgroup
#nixos-debug = nixos-fcs-kernel {gitCommit = "4cc4efaab5e4a0bfa3089e935215b981c1922919";};
# merge again fcs_wake and fcs_wait
#nixos-debug = nixos-fcs-kernel {gitCommit = "40c6f72f4ae54b0b636b193ac0648fb5730c810d";};
# start from scratch, this is the working version with split fcs_wake and fcs_wait
nixos-debug = nixos-fcs-kernel {gitCommit = "c9a39d6a4ca83845b4e71fcc268fb0a76aff1bdf"; branch = "fcs-test"; };
nixos-fcsv1-lockstat = nixos-fcs-kernel {
gitCommit = "bc11660676d3d68ce2459b9fb5d5e654e3f413be";
lockStat = true;
};
nixos-fcs-lockstat-preempt = nixos-fcs.override {
nixos-fcsv2-lockstat = nixos-fcs-kernel {
gitCommit = "db0f2eca0cd57a58bf456d7d2c7d5d8fdb25dfb1";
lockStat = true;
};
nixos-fcsv3-lockstat = nixos-fcs-kernel {
gitCommit = "6c17394890704c3345ac1a521bb547164b36b154";
lockStat = true;
};
nixos-fcsv3-lockstat-preempt = nixos-fcs-kernel {
gitCommit = "6c17394890704c3345ac1a521bb547164b36b154";
lockStat = true;
preempt = true;
};

7
m/eudy/slurm.nix Normal file
View File

@ -0,0 +1,7 @@
{ lib, ... }:
{
services.slurm = {
client.enable = lib.mkForce false;
};
}

View File

@ -1,162 +0,0 @@
modules:
http_2xx:
prober: http
timeout: 5s
http:
proxy_url: "http://127.0.0.1:23080"
skip_resolve_phase_with_proxy: true
follow_redirects: true
valid_status_codes: [] # Defaults to 2xx
method: GET
http_with_proxy:
prober: http
http:
proxy_url: "http://127.0.0.1:3128"
skip_resolve_phase_with_proxy: true
http_with_proxy_and_headers:
prober: http
http:
proxy_url: "http://127.0.0.1:3128"
proxy_connect_header:
Proxy-Authorization:
- Bearer token
http_post_2xx:
prober: http
timeout: 5s
http:
method: POST
headers:
Content-Type: application/json
body: '{}'
http_post_body_file:
prober: http
timeout: 5s
http:
method: POST
body_file: "/files/body.txt"
http_basic_auth_example:
prober: http
timeout: 5s
http:
method: POST
headers:
Host: "login.example.com"
basic_auth:
username: "username"
password: "mysecret"
http_2xx_oauth_client_credentials:
prober: http
timeout: 5s
http:
valid_http_versions: ["HTTP/1.1", "HTTP/2"]
follow_redirects: true
preferred_ip_protocol: "ip4"
valid_status_codes:
- 200
- 201
oauth2:
client_id: "client_id"
client_secret: "client_secret"
token_url: "https://api.example.com/token"
endpoint_params:
grant_type: "client_credentials"
http_custom_ca_example:
prober: http
http:
method: GET
tls_config:
ca_file: "/certs/my_cert.crt"
http_gzip:
prober: http
http:
method: GET
compression: gzip
http_gzip_with_accept_encoding:
prober: http
http:
method: GET
compression: gzip
headers:
Accept-Encoding: gzip
tls_connect:
prober: tcp
timeout: 5s
tcp:
tls: true
tcp_connect_example:
prober: tcp
timeout: 5s
imap_starttls:
prober: tcp
timeout: 5s
tcp:
query_response:
- expect: "OK.*STARTTLS"
- send: ". STARTTLS"
- expect: "OK"
- starttls: true
- send: ". capability"
- expect: "CAPABILITY IMAP4rev1"
smtp_starttls:
prober: tcp
timeout: 5s
tcp:
query_response:
- expect: "^220 ([^ ]+) ESMTP (.+)$"
- send: "EHLO prober\r"
- expect: "^250-STARTTLS"
- send: "STARTTLS\r"
- expect: "^220"
- starttls: true
- send: "EHLO prober\r"
- expect: "^250-AUTH"
- send: "QUIT\r"
irc_banner_example:
prober: tcp
timeout: 5s
tcp:
query_response:
- send: "NICK prober"
- send: "USER prober prober prober :prober"
- expect: "PING :([^ ]+)"
send: "PONG ${1}"
- expect: "^:[^ ]+ 001"
icmp:
prober: icmp
timeout: 5s
icmp:
preferred_ip_protocol: "ip4"
dns_udp_example:
prober: dns
timeout: 5s
dns:
query_name: "www.prometheus.io"
query_type: "A"
valid_rcodes:
- NOERROR
validate_answer_rrs:
fail_if_matches_regexp:
- ".*127.0.0.1"
fail_if_all_match_regexp:
- ".*127.0.0.1"
fail_if_not_matches_regexp:
- "www.prometheus.io.\t300\tIN\tA\t127.0.0.1"
fail_if_none_matches_regexp:
- "127.0.0.1"
validate_authority_rrs:
fail_if_matches_regexp:
- ".*127.0.0.1"
validate_additional_rrs:
fail_if_matches_regexp:
- ".*127.0.0.1"
dns_soa:
prober: dns
dns:
query_name: "prometheus.io"
query_type: "SOA"
dns_tcp_example:
prober: dns
dns:
transport_protocol: "tcp" # defaults to "udp"
preferred_ip_protocol: "ip4" # defaults to "ip6"
query_name: "www.prometheus.io"

View File

@ -1,8 +1,8 @@
{ config, pkgs, ... }:
# Mounts the /ceph filesystem at boot
{
environment.systemPackages = with pkgs; [
ceph
ceph-client
fio # For benchmarks
];
@ -11,14 +11,14 @@
# modprobe command.
boot.kernelModules = [ "ceph" ];
age.secrets.cephUser.file = ../../secrets/ceph-user.age;
age.secrets."secrets/ceph-user".file = ./secrets/ceph-user.age;
fileSystems."/ceph" = {
fsType = "ceph";
device = "user@9c8d06e0-485f-4aaf-b16b-06d6daf1232b.cephfs=/";
options = [
"mon_addr=10.0.40.40"
"secretfile=${config.age.secrets.cephUser.path}"
"mon_addr=10.0.42.40"
"secretfile=${config.age.secrets."secrets/ceph-user".path}"
];
};
}

View File

@ -1,23 +1,20 @@
{ config, pkgs, ... }:
{ config, pkgs, agenix, ... }:
{
imports = [
../common/xeon.nix
../common/main.nix
../module/ceph.nix
../module/debuginfod.nix
../module/emulation.nix
../module/slurm-client.nix
./gitlab-runner.nix
./monitoring.nix
./nfs.nix
./slurm-server.nix
./nix-serve.nix
./public-inbox.nix
./gitea.nix
./msmtp.nix
./postgresql.nix
./slurm-daemon.nix
./ceph.nix
#./pxe.nix
agenix.nixosModules.default
];
environment.systemPackages = [
agenix.packages.x86_64-linux.default
];
# Select the this using the ID to avoid mismatches
@ -33,15 +30,5 @@
address = "10.0.42.7";
prefixLength = 24;
} ];
firewall = {
extraCommands = ''
# Accept all proxy traffic from compute nodes but not the login
iptables -A nixos-fw -p tcp -s 10.0.40.30 --dport 23080 -j nixos-fw-log-refuse
iptables -A nixos-fw -p tcp -s 10.0.40.0/24 --dport 23080 -j nixos-fw-accept
'';
};
};
# Allow proxy to bind to the ethernet interface
services.openssh.settings.GatewayPorts = "clientspecified";
}

View File

@ -1,63 +0,0 @@
{ config, lib, ... }:
{
age.secrets.giteaRunnerToken.file = ../../secrets/gitea-runner-token.age;
services.gitea = {
enable = true;
appName = "Gitea in the jungle";
settings = {
server = {
ROOT_URL = "https://jungle.bsc.es/git/";
LOCAL_ROOT_URL = "https://jungle.bsc.es/git/";
LANDING_PAGE = "explore";
};
metrics.ENABLED = true;
service = {
REGISTER_MANUAL_CONFIRM = true;
ENABLE_NOTIFY_MAIL = true;
};
log.LEVEL = "Warn";
mailer = {
ENABLED = true;
FROM = "jungle-robot@bsc.es";
PROTOCOL = "sendmail";
SENDMAIL_PATH = "/run/wrappers/bin/sendmail";
SENDMAIL_ARGS = "--";
};
};
};
services.gitea-actions-runner.instances = {
runrun = {
enable = true;
name = "runrun";
url = "https://jungle.bsc.es/git/";
tokenFile = config.age.secrets.giteaRunnerToken.path;
labels = [ "native:host" ];
settings.runner.capacity = 8;
};
};
systemd.services.gitea-runner-runrun = {
path = [ "/run/current-system/sw" ];
serviceConfig = {
# DynamicUser doesn't work well with SSH
DynamicUser = lib.mkForce false;
User = "gitea-runner";
Group = "gitea-runner";
};
};
users.users.gitea-runner = {
isSystemUser = true;
home = "/var/lib/gitea-runner";
description = "Gitea Runner";
group = "gitea-runner";
extraGroups = [ "docker" ];
createHome = true;
};
users.groups.gitea-runner = {};
}

View File

@ -1,37 +1,43 @@
{ pkgs, lib, config, ... }:
{
age.secrets.gitlabRunnerShellToken.file = ../../secrets/gitlab-runner-shell-token.age;
age.secrets.gitlabRunnerDockerToken.file = ../../secrets/gitlab-runner-docker-token.age;
age.secrets."secrets/ovni-token".file = ./secrets/ovni-token.age;
age.secrets."secrets/nosv-token".file = ./secrets/nosv-token.age;
services.gitlab-runner = {
enable = true;
settings.concurrent = 5;
services = let
common-shell = {
services = {
ovni-shell = {
registrationConfigFile = config.age.secrets."secrets/ovni-token".path;
executor = "shell";
tagList = [ "nix" "xeon" ];
environmentVariables = {
SHELL = "${pkgs.bash}/bin/bash";
};
};
common-docker = {
executor = "docker";
ovni-docker = {
registrationConfigFile = config.age.secrets."secrets/ovni-token".path;
dockerImage = "debian:stable";
registrationFlags = [
"--docker-network-mode host"
];
tagList = [ "docker" "xeon" ];
registrationFlags = [ "--docker-network-mode host" ];
environmentVariables = {
https_proxy = "http://localhost:23080";
http_proxy = "http://localhost:23080";
};
};
in {
# For pm.bsc.es/gitlab
gitlab-pm-shell = common-shell // {
authenticationTokenConfigFile = config.age.secrets.gitlabRunnerShellToken.path;
};
gitlab-pm-docker = common-docker // {
authenticationTokenConfigFile = config.age.secrets.gitlabRunnerDockerToken.path;
nosv-docker = {
registrationConfigFile = config.age.secrets."secrets/nosv-token".path;
dockerImage = "debian:stable";
tagList = [ "docker" "xeon" ];
registrationFlags = [
"--docker-network-mode host"
"--docker-cpus 56"
];
environmentVariables = {
https_proxy = "http://localhost:23080";
http_proxy = "http://localhost:23080";
};
};
};
};

View File

@ -1,14 +1,6 @@
{ config, lib, ... }:
{
imports = [ ../module/slurm-exporter.nix ];
age.secrets.grafanaJungleRobotPassword = {
file = ../../secrets/jungle-robot-password.age;
owner = "grafana";
mode = "400";
};
services.grafana = {
enable = true;
settings = {
@ -19,30 +11,14 @@
http_port = 2342;
http_addr = "127.0.0.1";
};
smtp = {
enabled = true;
from_address = "jungle-robot@bsc.es";
user = "jungle-robot";
# Read the password from a file, which is only readable by grafana user
# https://grafana.com/docs/grafana/latest/setup-grafana/configure-grafana/#file-provider
password = "$__file{${config.age.secrets.grafanaJungleRobotPassword.path}}";
host = "mail.bsc.es:465";
startTLS_policy = "NoStartTLS";
};
feature_toggles.publicDashboards = true;
"auth.anonymous".enabled = true;
log.level = "warn";
};
};
# Make grafana alerts also use the proxy
systemd.services.grafana.environment = config.networking.proxy.envVars;
services.prometheus = {
enable = true;
port = 9001;
retentionTime = "1y";
listenAddress = "127.0.0.1";
};
systemd.services.prometheus-ipmi-exporter.serviceConfig.DynamicUser = lib.mkForce false;
@ -72,23 +48,13 @@
user = "root";
configFile = ./ipmi.yml;
#extraFlags = [ "--log.level=debug" ];
listenAddress = "127.0.0.1";
};
node = {
enable = true;
enabledCollectors = [ "systemd" ];
port = 9002;
listenAddress = "127.0.0.1";
};
smartctl = {
enable = true;
listenAddress = "127.0.0.1";
};
blackbox = {
enable = true;
listenAddress = "127.0.0.1";
configFile = ./blackbox.yml;
};
smartctl.enable = true;
};
scrapeConfigs = [
@ -101,8 +67,6 @@
"127.0.0.1:9323"
"127.0.0.1:9252"
"127.0.0.1:${toString config.services.prometheus.exporters.smartctl.port}"
"127.0.0.1:9341" # Slurm exporter
"127.0.0.1:${toString config.services.prometheus.exporters.blackbox.port}"
];
}];
}
@ -116,71 +80,6 @@
];
}];
}
{
job_name = "blackbox-http";
metrics_path = "/probe";
params = { module = [ "http_2xx" ]; };
static_configs = [{
targets = [
"https://www.google.com/robots.txt"
"https://pm.bsc.es/"
"https://pm.bsc.es/gitlab/"
"https://jungle.bsc.es/"
"https://gitlab.bsc.es/"
];
}];
relabel_configs = [
{
# Takes the address and sets it in the "target=<xyz>" URL parameter
source_labels = [ "__address__" ];
target_label = "__param_target";
}
{
# Sets the "instance" label with the remote host we are querying
source_labels = [ "__param_target" ];
target_label = "instance";
}
{
# Shows the host target address instead of the blackbox address
target_label = "__address__";
replacement = "127.0.0.1:${toString config.services.prometheus.exporters.blackbox.port}";
}
];
}
{
job_name = "blackbox-icmp";
metrics_path = "/probe";
params = { module = [ "icmp" ]; };
static_configs = [{
targets = [
"1.1.1.1"
"8.8.8.8"
"ssfhead"
"anella-bsc.cesca.cat"
];
}];
relabel_configs = [
{
# Takes the address and sets it in the "target=<xyz>" URL parameter
source_labels = [ "__address__" ];
target_label = "__param_target";
}
{
# Sets the "instance" label with the remote host we are querying
source_labels = [ "__param_target" ];
target_label = "instance";
}
{
# Shows the host target address instead of the blackbox address
target_label = "__address__";
replacement = "127.0.0.1:${toString config.services.prometheus.exporters.blackbox.port}";
}
];
}
{
job_name = "gitea";
static_configs = [{ targets = [ "127.0.0.1:3000" ]; }];
}
{
# Scrape the IPMI info of the hosts remotely via LAN
job_name = "ipmi-lan";
@ -233,17 +132,6 @@
}
];
}
{
job_name = "ipmi-raccoon";
metrics_path = "/ipmi";
static_configs = [
{ targets = [ "127.0.0.1:9291" ]; }
];
params = {
target = [ "84.88.51.142" ];
module = [ "raccoon" ];
};
}
];
};
}

View File

@ -1,24 +0,0 @@
{ config, lib, ... }:
{
age.secrets.jungleRobotPassword = {
file = ../../secrets/jungle-robot-password.age;
group = "gitea";
mode = "440";
};
programs.msmtp = {
enable = true;
accounts = {
default = {
auth = true;
tls = true;
tls_starttls = false;
port = 465;
host = "mail.bsc.es";
user = "jungle-robot";
passwordeval = "cat ${config.age.secrets.jungleRobotPassword.path}";
from = "jungle-robot@bsc.es";
};
};
};
}

View File

@ -1,16 +0,0 @@
{ config, ... }:
{
age.secrets.nixServe.file = ../../secrets/nix-serve.age;
services.nix-serve = {
enable = true;
# Only listen locally, as we serve it via ssh
bindAddress = "127.0.0.1";
port = 5000;
secretKeyFile = config.age.secrets.nixServe.path;
# Public key:
# jungle.bsc.es:pEc7MlAT0HEwLQYPtpkPLwRsGf80ZI26aj29zMw/HH0=
};
}

View File

@ -1,19 +0,0 @@
{ lib, ... }:
{
services.postgresql = {
enable = true;
ensureDatabases = [ "perftestsdb" ];
ensureUsers = [
{ name = "anavarro"; ensureClauses.superuser = true; }
{ name = "rarias"; ensureClauses.superuser = true; }
{ name = "grafana"; }
];
authentication = ''
#type database DBuser auth-method
local perftestsdb rarias trust
local perftestsdb anavarro trust
local perftestsdb grafana trust
'';
};
}

View File

@ -1,79 +0,0 @@
/*
* CC0-1.0 <https://creativecommons.org/publicdomain/zero/1.0/legalcode>
* Dark color scheme using 216 web-safe colors, inspired
* somewhat by the default color scheme in mutt.
* It reduces eyestrain for me, and energy usage for all:
* https://en.wikipedia.org/wiki/Light-on-dark_color_scheme
*/
* {
font-size: 14px;
font-family: monospace;
}
pre {
white-space: pre-wrap;
padding: 10px;
background: #f5f5f5;
}
hr {
margin: 30px 0;
}
body {
max-width: 120ex; /* 120 columns wide */
margin: 50px auto;
}
/*
* Underlined links add visual noise which make them hard-to-read.
* Use colors to make them stand out, instead.
*/
a:link {
color: #007;
text-decoration: none;
}
a:visited {
color:#504;
}
a:hover {
text-decoration: underline;
}
/* quoted text in emails gets a different color */
*.q { color:gray }
/*
* these may be used with cgit <https://git.zx2c4.com/cgit/>, too.
* (cgit uses <div>, public-inbox uses <span>)
*/
*.add { color:darkgreen } /* diff post-image lines */
*.del { color:darkred } /* diff pre-image lines */
*.head { color:black } /* diff header (metainformation) */
*.hunk { color:gray } /* diff hunk-header */
/*
* highlight 3.x colors (tested 3.18) for displaying blobs.
* This doesn't use most of the colors available, as I find too
* many colors overwhelming, so the default is commented out.
*/
.hl.num { color:#f30 } /* number */
.hl.esc { color:#f0f } /* escape character */
.hl.str { color:#f30 } /* string */
.hl.ppc { color:#f0f } /* preprocessor */
.hl.pps { color:#f30 } /* preprocessor string */
.hl.slc { color:#09f } /* single-line comment */
.hl.com { color:#09f } /* multi-line comment */
/* .hl.opt { color:#ccc } */ /* operator */
/* .hl.ipl { color:#ccc } */ /* interpolation */
/* keyword groups kw[a-z] */
.hl.kwa { color:#ff0 }
.hl.kwb { color:#0f0 }
.hl.kwc { color:#ff0 }
/* .hl.kwd { color:#ccc } */
/* line-number (unused by public-inbox) */
/* .hl.lin { color:#ccc } */

View File

@ -1,47 +0,0 @@
{ lib, ... }:
{
services.public-inbox = {
enable = true;
http = {
enable = true;
port = 8081;
mounts = [ "/lists" ];
};
settings.publicinbox = {
css = [ "${./public-inbox.css}" ];
wwwlisting = "all";
};
inboxes = {
bscpkgs = {
url = "https://jungle.bsc.es/lists/bscpkgs";
address = [ "~rodarima/bscpkgs@lists.sr.ht" ];
watch = [ "imaps://jungle-robot%40gmx.com@imap.gmx.com/INBOX" ];
description = "Patches for bscpkgs";
listid = "~rodarima/bscpkgs.lists.sr.ht";
};
jungle = {
url = "https://jungle.bsc.es/lists/jungle";
address = [ "~rodarima/jungle@lists.sr.ht" ];
watch = [ "imaps://jungle-robot%40gmx.com@imap.gmx.com/INBOX" ];
description = "Patches for jungle";
listid = "~rodarima/jungle.lists.sr.ht";
};
};
};
# We need access to the network for the watch service, as we will fetch the
# emails directly from the IMAP server.
systemd.services.public-inbox-watch.serviceConfig = {
PrivateNetwork = lib.mkForce false;
RestrictAddressFamilies = lib.mkForce [ "AF_UNIX" "AF_INET" "AF_INET6" ];
KillSignal = "SIGKILL"; # Avoid slow shutdown
# Required for chmod(..., 02750) on directories by git, from
# systemd.exec(8):
# > Note that this restricts marking of any type of file system object with
# > these bits, including both regular files and directories (where the SGID
# > is a different meaning than for files, see documentation).
RestrictSUIDSGID = lib.mkForce false;
};
}

11
m/hut/secrets.nix Normal file
View File

@ -0,0 +1,11 @@
let
rarias = "ssh-ed25519 AAAAC3NzaC1lZDI1NTE5AAAAIE1oZTPtlEXdGt0Ak+upeCIiBdaDQtcmuWoTUCVuSVIR rarias@hut";
root = "ssh-ed25519 AAAAC3NzaC1lZDI1NTE5AAAAIII/1TNArcwA6D47mgW4TArwlxQRpwmIGiZDysah40Gb";
hut = "ssh-ed25519 AAAAC3NzaC1lZDI1NTE5AAAAICO7jIp6JRnRWTMDsTB/aiaICJCl4x8qmKMPSs4lCqP1";
default = [ rarias root hut ];
in
{
"secrets/ovni-token.age".publicKeys = default;
"secrets/nosv-token.age".publicKeys = default;
"secrets/ceph-user.age".publicKeys = default;
}

View File

@ -0,0 +1,11 @@
age-encryption.org/v1
-> ssh-ed25519 CAWG4Q 35Ak+Mep9k5KnDLF1ywDbMD4l4mRFg6D0et19tqXxAw
Wgr+CX4rzrPmUszSidtLAVSvgD80F2dqtd92hGZIFwo
-> ssh-ed25519 MSF3dg OVFvpkAyWTowtxsafstX31H/hJpNZmnOCbvqMIN0+AQ
VxjRcQmp+BadEh2y0PB96EeizIl3tTQpVu0CWHmsc1s
-> ssh-ed25519 HY2yRg MJSQIpre9m0XnojgXuKQ/+hVBZNrZNGZqplwhqicpjI
CLkE52iqpoqSnbzisNjQgxTfNqKeaRl5ntcw1d+ZDyQ
-> m$8`De%~-grease '85p}`by
52zMpprONcawWDDtzHdWNwFoYXErPUnVjhSONbUBpDlqAmJmD1LcAnsU
--- 0vZOPyXQIMMGTwgFfvm8Sn8O7vjrsjGUEy5m/BASCyc
È| üœ)‡<>ËëË*_ËDóUS`<06><>àŠèr Âs<C382>¢NªÈ[ÖŒ^e+A 1œ“G.í#âù°m˜¸Wß 5 ·àƒµ(

Binary file not shown.

Binary file not shown.

11
m/hut/slurm-daemon.nix Normal file
View File

@ -0,0 +1,11 @@
{ ... }:
{
services.slurm = {
server.enable = true;
partitionName = [
"owl Nodes=owl[1-2] Default=YES MaxTime=INFINITE State=UP"
"all Nodes=owl[1-2],hut Default=NO MaxTime=INFINITE State=UP"
];
};
}

View File

@ -1,7 +0,0 @@
{ ... }:
{
services.slurm = {
server.enable = true;
};
}

View File

@ -7,9 +7,5 @@
- 10.0.40.106
- 10.0.40.107
- 10.0.40.108
# Storage
- 10.0.40.141
- 10.0.40.142
- 10.0.40.143
labels:
job: ipmi-lan

View File

@ -2,11 +2,13 @@
{
imports = [
../common/xeon.nix
../common/main.nix
#(modulesPath + "/installer/netboot/netboot-minimal.nix")
../eudy/cpufreq.nix
../eudy/users.nix
../eudy/slurm.nix
./users.nix
./kernel.nix
];

View File

@ -1,29 +1,9 @@
{ pkgs, lib, ... }:
let
#fcs-devel = pkgs.linuxPackages_custom {
# version = "6.2.8";
# src = /mnt/data/kernel/fcs/kernel/src;
# configfile = /mnt/data/kernel/fcs/kernel/configs/defconfig;
#};
kernel = nixos-fcsv4;
#fcsv1 = fcs-kernel "bc11660676d3d68ce2459b9fb5d5e654e3f413be" false;
#fcsv2 = fcs-kernel "db0f2eca0cd57a58bf456d7d2c7d5d8fdb25dfb1" false;
#fcsv1-lockdep = fcs-kernel "bc11660676d3d68ce2459b9fb5d5e654e3f413be" true;
#fcsv2-lockdep = fcs-kernel "db0f2eca0cd57a58bf456d7d2c7d5d8fdb25dfb1" true;
#fcs-kernel = gitCommit: lockdep: pkgs.linuxPackages_custom {
# version = "6.2.8";
# src = builtins.fetchGit {
# url = "git@bscpm03.bsc.es:ompss-kernel/linux.git";
# rev = gitCommit;
# ref = "fcs";
# };
# configfile = if lockdep then ./configs/lockdep else ./configs/defconfig;
#};
kernel = nixos-fcs;
nixos-fcs-kernel = lib.makeOverridable ({gitCommit, lockStat ? false, preempt ? false, branch ? "fcs"}: pkgs.linuxPackagesFor (pkgs.buildLinux rec {
nixos-fcs-kernel = {gitCommit, lockStat ? false, preempt ? false, branch ? "fcs"}: pkgs.linuxPackagesFor (pkgs.buildLinux rec {
version = "6.2.8";
src = builtins.fetchGit {
url = "git@bscpm03.bsc.es:ompss-kernel/linux.git";
@ -40,13 +20,27 @@ let
};
kernelPatches = [];
extraMeta.branch = lib.versions.majorMinor version;
}));
});
nixos-fcs = nixos-fcs-kernel {gitCommit = "8a09822dfcc8f0626b209d6d2aec8b5da459dfee";};
nixos-fcs-lockstat = nixos-fcs.override {
nixos-fcsv1 = nixos-fcs-kernel {gitCommit = "bc11660676d3d68ce2459b9fb5d5e654e3f413be";};
nixos-fcsv2 = nixos-fcs-kernel {gitCommit = "db0f2eca0cd57a58bf456d7d2c7d5d8fdb25dfb1";};
nixos-fcsv3 = nixos-fcs-kernel {gitCommit = "6c17394890704c3345ac1a521bb547164b36b154";};
nixos-fcsv4 = nixos-fcs-kernel {gitCommit = "c94c3d946f33ac3e5782a02ee002cc1164c0cb4f";};
nixos-fcsv1-lockstat = nixos-fcs-kernel {
gitCommit = "bc11660676d3d68ce2459b9fb5d5e654e3f413be";
lockStat = true;
};
nixos-fcs-lockstat-preempt = nixos-fcs.override {
nixos-fcsv2-lockstat = nixos-fcs-kernel {
gitCommit = "db0f2eca0cd57a58bf456d7d2c7d5d8fdb25dfb1";
lockStat = true;
};
nixos-fcsv3-lockstat = nixos-fcs-kernel {
gitCommit = "6c17394890704c3345ac1a521bb547164b36b154";
lockStat = true;
};
nixos-fcsv3-lockstat-preempt = nixos-fcs-kernel {
gitCommit = "6c17394890704c3345ac1a521bb547164b36b154";
lockStat = true;
preempt = true;
};
@ -66,5 +60,5 @@ in {
# enable memory overcommit, needed to build a taglibc system using nix after
# increasing the openblas memory footprint
boot.kernel.sysctl."vm.overcommit_memory" = 1;
boot.kernel.sysctl."vm.overcommit_memory" = lib.mkForce 1;
}

17
m/koro/users.nix Normal file
View File

@ -0,0 +1,17 @@
{ ... }:
{
users.users = {
vlopez = {
uid = 4334;
isNormalUser = true;
home = "/home/Computational/vlopez";
description = "Victor López";
group = "Computational";
hashedPassword = "$6$0ZBkgIYE/renVqtt$1uWlJsb0FEezRVNoETTzZMx4X2SvWiOsKvi0ppWCRqI66S6TqMBXBdP4fcQyvRRBt0e4Z7opZIvvITBsEtO0f0";
openssh.authorizedKeys.keys = [
"ssh-ed25519 AAAAC3NzaC1lZDI1NTE5AAAAIGMwlUZRf9jfG666Qa5Sb+KtEhXqkiMlBV2su3x/dXHq victor@arch"
];
};
};
}

View File

@ -2,27 +2,28 @@
{
imports = [
../common/xeon.nix
../module/monitoring.nix
../common/main.nix
../common/monitoring.nix
];
boot.loader.grub.device = "/dev/disk/by-id/wwn-0x55cd2e414d53563a";
boot.kernel.sysctl = {
"kernel.yama.ptrace_scope" = lib.mkForce "1";
};
environment.systemPackages = with pkgs; [
ceph
];
services.slurm = {
client.enable = lib.mkForce false;
};
services.ceph = {
enable = true;
global = {
fsid = "9c8d06e0-485f-4aaf-b16b-06d6daf1232b";
monHost = "10.0.40.40";
monInitialMembers = "bay";
clusterNetwork = "10.0.40.40/24"; # Use Ethernet only
monHost = "10.0.42.40";
monInitialMembers = "10.0.42.40";
publicNetwork = "10.0.42.40/24";
clusterNetwork = "10.0.42.40/24";
};
osd = {
enable = true;
@ -49,16 +50,6 @@
address = "10.0.42.42";
prefixLength = 24;
} ];
firewall = {
extraCommands = ''
# Accept all incoming TCP traffic from bay
iptables -A nixos-fw -p tcp -s bay -j nixos-fw-accept
# Accept monitoring requests from hut
iptables -A nixos-fw -p tcp -s hut --dport 9002 -j nixos-fw-accept
# Accept all Ceph traffic from the local network
iptables -A nixos-fw -p tcp -s 10.0.40.0/24 -m multiport --dport 3300,6789,6800:7568 -j nixos-fw-accept
'';
};
};
# Missing service for volumes, see:

View File

@ -1,3 +0,0 @@
{
services.nixseparatedebuginfod.enable = true;
}

View File

@ -1,3 +0,0 @@
{
boot.binfmt.emulatedSystems = [ "armv7l-linux" "aarch64-linux" "powerpc64le-linux" "riscv64-linux" ];
}

View File

@ -1,24 +0,0 @@
{ config, lib, ... }:
with lib;
{
options = {
users.jungleUsers = mkOption {
type = types.attrsOf (types.anything // { check = (x: x ? "hosts"); });
description = ''
Same as users.users but with the extra `hosts` attribute, which controls
access to the nodes by `networking.hostName`.
'';
};
};
config = let
allowedUser = host: userConf: builtins.elem host userConf.hosts;
filterUsers = host: users: filterAttrs (n: v: allowedUser host v) users;
removeHosts = users: mapAttrs (n: v: builtins.removeAttrs v [ "hosts" ]) users;
currentHost = config.networking.hostName;
in {
users.users = removeHosts (filterUsers currentHost config.users.jungleUsers);
};
}

View File

@ -1,107 +0,0 @@
{ config, pkgs, lib, ... }:
let
suspendProgram = pkgs.writeScript "suspend.sh" ''
#!/usr/bin/env bash
exec 1>>/var/log/power_save.log 2>>/var/log/power_save.log
set -x
export "PATH=/run/current-system/sw/bin:$PATH"
echo "$(date) Suspend invoked $0 $*" >> /var/log/power_save.log
hosts=$(scontrol show hostnames $1)
for host in $hosts; do
echo Shutting down host: $host
ipmitool -I lanplus -H ''${host}-ipmi -P "" -U "" chassis power off
done
'';
resumeProgram = pkgs.writeScript "resume.sh" ''
#!/usr/bin/env bash
exec 1>>/var/log/power_save.log 2>>/var/log/power_save.log
set -x
export "PATH=/run/current-system/sw/bin:$PATH"
echo "$(date) Suspend invoked $0 $*" >> /var/log/power_save.log
hosts=$(scontrol show hostnames $1)
for host in $hosts; do
echo Starting host: $host
ipmitool -I lanplus -H ''${host}-ipmi -P "" -U "" chassis power on
done
'';
in {
systemd.services.slurmd.serviceConfig = {
# Kill all processes in the control group on stop/restart. This will kill
# all the jobs running, so ensure that we only upgrade when the nodes are
# not in use. See:
# https://github.com/NixOS/nixpkgs/commit/ae93ed0f0d4e7be0a286d1fca86446318c0c6ffb
# https://bugs.schedmd.com/show_bug.cgi?id=2095#c24
KillMode = lib.mkForce "control-group";
};
services.slurm = {
client.enable = true;
controlMachine = "hut";
clusterName = "jungle";
nodeName = [
"owl[1,2] Sockets=2 CoresPerSocket=14 ThreadsPerCore=2 Feature=owl"
"hut Sockets=2 CoresPerSocket=14 ThreadsPerCore=2"
];
partitionName = [
"owl Nodes=owl[1-2] Default=YES DefaultTime=01:00:00 MaxTime=INFINITE State=UP"
"all Nodes=owl[1-2],hut Default=NO DefaultTime=01:00:00 MaxTime=INFINITE State=UP"
];
# See slurm.conf(5) for more details about these options.
extraConfig = ''
# Use PMIx for MPI by default. It works okay with MPICH and OpenMPI, but
# not with Intel MPI. For that use the compatibility shim libpmi.so
# setting I_MPI_PMI_LIBRARY=$pmix/lib/libpmi.so while maintaining the PMIx
# library in SLURM (--mpi=pmix). See more details here:
# https://pm.bsc.es/gitlab/rarias/jungle/-/issues/16
MpiDefault=pmix
# When a node reboots return that node to the slurm queue as soon as it
# becomes operative again.
ReturnToService=2
# Track all processes by using a cgroup
ProctrackType=proctrack/cgroup
# Enable task/affinity to allow the jobs to run in a specified subset of
# the resources. Use the task/cgroup plugin to enable process containment.
TaskPlugin=task/affinity,task/cgroup
# Power off unused nodes until they are requested
SuspendProgram=${suspendProgram}
SuspendTimeout=60
ResumeProgram=${resumeProgram}
ResumeTimeout=300
SuspendExcNodes=hut
# Turn the nodes off after 1 hour of inactivity
SuspendTime=3600
# Reduce port range so we can allow only this range in the firewall
SrunPortRange=60000-61000
# Use cores as consumable resources. In SLURM terms, a core may have
# multiple hardware threads (or CPUs).
SelectType=select/cons_tres
# Ignore memory constraints and only use unused cores to share a node with
# other jobs.
SelectTypeParameters=CR_Core
'';
};
age.secrets.mungeKey = {
file = ../../secrets/munge-key.age;
owner = "munge";
group = "munge";
};
services.munge = {
enable = true;
password = config.age.secrets.mungeKey.path;
};
}

View File

@ -1,28 +0,0 @@
{ config, lib, pkgs, ... }:
# See also: https://github.com/NixOS/nixpkgs/pull/112010
# And: https://github.com/NixOS/nixpkgs/pull/115839
with lib;
{
systemd.services."prometheus-slurm-exporter" = {
wantedBy = [ "multi-user.target" ];
after = [ "network.target" ];
serviceConfig = {
Restart = mkDefault "always";
PrivateTmp = mkDefault true;
WorkingDirectory = mkDefault "/tmp";
DynamicUser = mkDefault true;
ExecStart = ''
${pkgs.prometheus-slurm-exporter}/bin/prometheus-slurm-exporter --listen-address "127.0.0.1:9341"
'';
Environment = [
"PATH=${pkgs.slurm}/bin"
# We need to specify the slurm config to be able to talk to the slurmd
# daemon.
"SLURM_CONF=${config.services.slurm.etcSlurm}/slurm.conf"
];
};
};
}

View File

@ -1,8 +0,0 @@
{ ... }:
{
networking.firewall = {
# Required for PMIx in SLURM, we should find a better way
allowedTCPPortRanges = [ { from=1024; to=65535; } ];
};
}

View File

@ -1,19 +0,0 @@
{ ... }:
{
# Mount the hut nix store via NFS
fileSystems."/mnt/hut-nix-store" = {
device = "hut:/nix/store";
fsType = "nfs";
options = [ "ro" ];
};
systemd.services.slurmd.serviceConfig = {
# When running a job, bind the hut store in /nix/store so the paths are
# available too.
# FIXME: This doesn't keep the programs in /run/current-system/sw/bin
# available in the store. Ideally they should be merged but the overlay FS
# doesn't work when the underlying directories change.
BindReadOnlyPaths = "/mnt/hut-nix-store:/nix/store";
};
}

View File

@ -1,14 +1,7 @@
{ config, pkgs, ... }:
{
imports = [
../common/xeon.nix
../module/ceph.nix
../module/emulation.nix
../module/slurm-client.nix
../module/slurm-firewall.nix
../module/debuginfod.nix
];
imports = [ ../common/main.nix ];
# Select the this using the ID to avoid mismatches
boot.loader.grub.device = "/dev/disk/by-id/wwn-0x55cd2e414d53566c";

View File

@ -1,17 +1,15 @@
{ config, pkgs, ... }:
{ config, pkgs, modulesPath, lib, ... }:
{
imports = [
../common/xeon.nix
../module/ceph.nix
../module/emulation.nix
../module/slurm-client.nix
../module/slurm-firewall.nix
../module/debuginfod.nix
#(modulesPath + "/installer/netboot/netboot-minimal.nix")
../common/main.nix
];
# Select the this using the ID to avoid mismatches
boot.loader.grub.device = "/dev/disk/by-id/wwn-0x55cd2e414d535629";
#programs.ssh.forwardX11 = false;
#programs.ssh.setXAuthLocation = lib.mkForce true;
networking = {
hostName = "owl2";
@ -19,7 +17,6 @@
address = "10.0.40.2";
prefixLength = 24;
} ];
# Watch out! The OmniPath device is not in the same place here:
interfaces.ibp129s0.ipv4.addresses = [ {
address = "10.0.42.2";
prefixLength = 24;

View File

@ -1,64 +0,0 @@
{ config, pkgs, lib, modulesPath, ... }:
{
imports = [
../common/base.nix
];
# Don't install Grub on the disk yet
boot.loader.grub.device = "nodev";
# Enable serial console
boot.kernelParams = [
"console=tty1"
"console=ttyS1,115200"
];
networking = {
hostName = "raccoon";
# Only BSC DNSs seem to be reachable from the office VLAN
nameservers = [ "84.88.52.35" "84.88.52.36" ];
defaultGateway = "84.88.51.129";
interfaces.eno0.ipv4.addresses = [ {
address = "84.88.51.152";
prefixLength = 25;
} ];
};
# Configure Nvidia driver to use with CUDA
hardware.nvidia.package = config.boot.kernelPackages.nvidiaPackages.production;
hardware.graphics.enable = true;
nixpkgs.config.allowUnfree = true;
nixpkgs.config.nvidia.acceptLicense = true;
services.xserver.videoDrivers = [ "nvidia" ];
users.motd = ''
DO YOU BRING FEEDS?
'';
}

405
pkgs/ceph.nix Normal file
View File

@ -0,0 +1,405 @@
{ lib
, stdenv
, runCommand
, fetchurl
, fetchFromGitHub
, fetchPypi
# Build time
, cmake
, ensureNewerSourcesHook
, fmt
, git
, makeWrapper
, nasm
, pkg-config
, which
# Tests
, nixosTests
# Runtime dependencies
, arrow-cpp
, babeltrace
, boost179
, bzip2
, cryptsetup
, cunit
, doxygen
, gperf
, graphviz
, gtest
, icu
, libcap
, libcap_ng
, libnl
, libxml2
, lttng-ust
, lua
, lz4
, oath-toolkit
, openldap
, python310
, rdkafka
, rocksdb
, snappy
, sqlite
, utf8proc
, zlib
, zstd
# Optional Dependencies
, curl ? null
, expat ? null
, fuse ? null
, libatomic_ops ? null
, libedit ? null
, libs3 ? null
, yasm ? null
# Mallocs
, gperftools ? null
, jemalloc ? null
# Crypto Dependencies
, cryptopp ? null
, nspr ? null
, nss ? null
# Linux Only Dependencies
, linuxHeaders
, util-linux
, libuuid
, udev
, keyutils
, rdma-core
, rabbitmq-c
, libaio ? null
, libxfs ? null
, liburing ? null
, zfs ? null
, ...
}:
# We must have one crypto library
assert cryptopp != null || (nss != null && nspr != null);
let
shouldUsePkg = pkg: if pkg != null && pkg.meta.available then pkg else null;
optYasm = shouldUsePkg yasm;
optExpat = shouldUsePkg expat;
optCurl = shouldUsePkg curl;
optFuse = shouldUsePkg fuse;
optLibedit = shouldUsePkg libedit;
optLibatomic_ops = shouldUsePkg libatomic_ops;
optLibs3 = shouldUsePkg libs3;
optJemalloc = shouldUsePkg jemalloc;
optGperftools = shouldUsePkg gperftools;
optCryptopp = shouldUsePkg cryptopp;
optNss = shouldUsePkg nss;
optNspr = shouldUsePkg nspr;
optLibaio = shouldUsePkg libaio;
optLibxfs = shouldUsePkg libxfs;
optZfs = shouldUsePkg zfs;
# Downgrade rocksdb, 7.10 breaks ceph
rocksdb' = rocksdb.overrideAttrs {
version = "7.9.2";
src = fetchFromGitHub {
owner = "facebook";
repo = "rocksdb";
rev = "refs/tags/v7.9.2";
hash = "sha256-5P7IqJ14EZzDkbjaBvbix04ceGGdlWBuVFH/5dpD5VM=";
};
};
hasRadosgw = optExpat != null && optCurl != null && optLibedit != null;
# Malloc implementation (can be jemalloc, tcmalloc or null)
malloc = if optJemalloc != null then optJemalloc else optGperftools;
# We prefer nss over cryptopp
cryptoStr = if optNss != null && optNspr != null then "nss" else
if optCryptopp != null then "cryptopp" else "none";
cryptoLibsMap = {
nss = [ optNss optNspr ];
cryptopp = [ optCryptopp ];
none = [ ];
};
getMeta = description: with lib; {
homepage = "https://ceph.io/en/";
inherit description;
license = with licenses; [ lgpl21 gpl2 bsd3 mit publicDomain ];
maintainers = with maintainers; [ adev ak johanot krav ];
platforms = [ "x86_64-linux" "aarch64-linux" ];
};
ceph-common = with python.pkgs; buildPythonPackage {
pname = "ceph-common";
inherit src version;
sourceRoot = "ceph-${version}/src/python-common";
propagatedBuildInputs = [
pyyaml
];
nativeCheckInputs = [
pytestCheckHook
];
disabledTests = [
# requires network access
"test_valid_addr"
];
meta = getMeta "Ceph common module for code shared by manager modules";
};
# Watch out for python <> boost compatibility
python = python310.override {
packageOverrides = self: super: {
sqlalchemy = super.sqlalchemy.overridePythonAttrs rec {
version = "1.4.46";
src = fetchPypi {
pname = "SQLAlchemy";
inherit version;
hash = "sha256-aRO4JH2KKS74MVFipRkx4rQM6RaB8bbxj2lwRSAMSjA=";
};
disabledTestPaths = [
"test/aaa_profiling"
"test/ext/mypy"
];
};
};
};
boost = boost179.override {
enablePython = true;
inherit python;
};
# TODO: split this off in build and runtime environment
ceph-python-env = python.withPackages (ps: with ps; [
ceph-common
# build time
cython
# debian/control
bcrypt
cherrypy
influxdb
jinja2
kubernetes
natsort
numpy
pecan
prettytable
pyjwt
pyopenssl
python-dateutil
pyyaml
requests
routes
scikit-learn
scipy
setuptools
sphinx
virtualenv
werkzeug
# src/pybind/mgr/requirements-required.txt
cryptography
jsonpatch
# src/tools/cephfs/shell/setup.py
cmd2
colorama
]);
inherit (ceph-python-env.python) sitePackages;
version = "18.2.0";
src = fetchurl {
url = "https://download.ceph.com/tarballs/ceph-${version}.tar.gz";
hash = "sha256:0k9nl6xi5brva51rr14m7ig27mmmd7vrpchcmqc40q3c2khn6ns9";
};
in rec {
ceph = stdenv.mkDerivation {
pname = "ceph";
inherit src version;
nativeBuildInputs = [
cmake
fmt
git
makeWrapper
nasm
pkg-config
python
python.pkgs.python # for the toPythonPath function
python.pkgs.wrapPython
which
(ensureNewerSourcesHook { year = "1980"; })
# for building docs/man-pages presumably
doxygen
graphviz
];
enableParallelBuilding = true;
buildInputs = cryptoLibsMap.${cryptoStr} ++ [
arrow-cpp
babeltrace
boost
bzip2
ceph-python-env
cryptsetup
cunit
gperf
gtest
icu
libcap
libnl
libxml2
lttng-ust
lua
lz4
malloc
oath-toolkit
openldap
optLibatomic_ops
optLibs3
optYasm
rdkafka
rocksdb'
snappy
sqlite
utf8proc
zlib
zstd
] ++ lib.optionals stdenv.isLinux [
keyutils
libcap_ng
liburing
libuuid
linuxHeaders
optLibaio
optLibxfs
optZfs
rabbitmq-c
rdma-core
udev
util-linux
] ++ lib.optionals hasRadosgw [
optCurl
optExpat
optFuse
optLibedit
];
pythonPath = [ ceph-python-env "${placeholder "out"}/${ceph-python-env.sitePackages}" ];
preConfigure =''
substituteInPlace src/common/module.c --replace "/sbin/modinfo" "modinfo"
substituteInPlace src/common/module.c --replace "/sbin/modprobe" "modprobe"
substituteInPlace src/common/module.c --replace "/bin/grep" "grep"
# install target needs to be in PYTHONPATH for "*.pth support" check to succeed
# set PYTHONPATH, so the build system doesn't silently skip installing ceph-volume and others
export PYTHONPATH=${ceph-python-env}/${sitePackages}:$lib/${sitePackages}:$out/${sitePackages}
patchShebangs src/
'';
cmakeFlags = [
"-DCMAKE_INSTALL_DATADIR=${placeholder "lib"}/lib"
"-DWITH_CEPHFS_SHELL:BOOL=ON"
"-DWITH_SYSTEMD:BOOL=OFF"
# `WITH_JAEGER` requires `thrift` as a depenedncy (fine), but the build fails with:
# CMake Error at src/opentelemetry-cpp-stamp/opentelemetry-cpp-build-Release.cmake:49 (message):
# Command failed: 2
#
# 'make' 'opentelemetry_trace' 'opentelemetry_exporter_jaeger_trace'
#
# See also
#
# /build/ceph-18.2.0/build/src/opentelemetry-cpp/src/opentelemetry-cpp-stamp/opentelemetry-cpp-build-*.log
# and that file contains:
# /build/ceph-18.2.0/src/jaegertracing/opentelemetry-cpp/exporters/jaeger/src/TUDPTransport.cc: In member function 'virtual void opentelemetry::v1::exporter::jaeger::TUDPTransport::close()':
# /build/ceph-18.2.0/src/jaegertracing/opentelemetry-cpp/exporters/jaeger/src/TUDPTransport.cc:71:7: error: '::close' has not been declared; did you mean 'pclose'?
# 71 | ::THRIFT_CLOSESOCKET(socket_);
# | ^~~~~~~~~~~~~~~~~~
# Looks like `close()` is somehow not included.
# But the relevant code is already removed in `open-telemetry` 1.10: https://github.com/open-telemetry/opentelemetry-cpp/pull/2031
# So it's proably not worth trying to fix that for this Ceph version,
# and instead just disable Ceph's Jaeger support.
"-DWITH_JAEGER:BOOL=OFF"
"-DWITH_TESTS:BOOL=OFF"
# Use our own libraries, where possible
"-DWITH_SYSTEM_ARROW:BOOL=ON" # Only used if other options enable Arrow support.
"-DWITH_SYSTEM_BOOST:BOOL=ON"
"-DWITH_SYSTEM_GTEST:BOOL=ON"
"-DWITH_SYSTEM_ROCKSDB:BOOL=ON"
"-DWITH_SYSTEM_UTF8PROC:BOOL=ON"
"-DWITH_SYSTEM_ZSTD:BOOL=ON"
# TODO breaks with sandbox, tries to download stuff with npm
"-DWITH_MGR_DASHBOARD_FRONTEND:BOOL=OFF"
# WITH_XFS has been set default ON from Ceph 16, keeping it optional in nixpkgs for now
''-DWITH_XFS=${if optLibxfs != null then "ON" else "OFF"}''
] ++ lib.optional stdenv.isLinux "-DWITH_SYSTEM_LIBURING=ON";
postFixup = ''
wrapPythonPrograms
wrapProgram $out/bin/ceph-mgr --prefix PYTHONPATH ":" "$(toPythonPath ${placeholder "out"}):$(toPythonPath ${ceph-python-env})"
# Test that ceph-volume exists since the build system has a tendency to
# silently drop it with misconfigurations.
test -f $out/bin/ceph-volume
'';
outputs = [ "out" "lib" "dev" "doc" "man" ];
doCheck = false; # uses pip to install things from the internet
# Takes 7+h to build with 2 cores.
requiredSystemFeatures = [ "big-parallel" ];
meta = getMeta "Distributed storage system";
passthru = {
inherit version;
tests = {
inherit (nixosTests)
ceph-multi-node
ceph-single-node
ceph-single-node-bluestore;
};
};
};
ceph-client = runCommand "ceph-client-${version}" {
meta = getMeta "Tools needed to mount Ceph's RADOS Block Devices/Cephfs";
} ''
mkdir -p $out/{bin,etc,${sitePackages},share/bash-completion/completions}
cp -r ${ceph}/bin/{ceph,.ceph-wrapped,rados,rbd,rbdmap} $out/bin
cp -r ${ceph}/bin/ceph-{authtool,conf,dencoder,rbdnamer,syn} $out/bin
cp -r ${ceph}/bin/rbd-replay* $out/bin
cp -r ${ceph}/sbin/mount.ceph $out/bin
cp -r ${ceph}/sbin/mount.fuse.ceph $out/bin
ln -s bin $out/sbin
cp -r ${ceph}/${sitePackages}/* $out/${sitePackages}
cp -r ${ceph}/etc/bash_completion.d $out/share/bash-completion/completions
# wrapPythonPrograms modifies .ceph-wrapped, so lets just update its paths
substituteInPlace $out/bin/ceph --replace ${ceph} $out
substituteInPlace $out/bin/.ceph-wrapped --replace ${ceph} $out
'';
}

View File

@ -1,36 +0,0 @@
diff --git a/src/util/mpir_hwtopo.c b/src/util/mpir_hwtopo.c
index 33e88bc..ee3641c 100644
--- a/src/util/mpir_hwtopo.c
+++ b/src/util/mpir_hwtopo.c
@@ -200,18 +200,6 @@ int MPII_hwtopo_init(void)
#ifdef HAVE_HWLOC
bindset = hwloc_bitmap_alloc();
hwloc_topology_init(&hwloc_topology);
- char *xmlfile = MPIR_pmi_get_jobattr("PMI_hwloc_xmlfile");
- if (xmlfile != NULL) {
- int rc;
- rc = hwloc_topology_set_xml(hwloc_topology, xmlfile);
- if (rc == 0) {
- /* To have hwloc still actually call OS-specific hooks, the
- * HWLOC_TOPOLOGY_FLAG_IS_THISSYSTEM has to be set to assert that the loaded
- * file is really the underlying system. */
- hwloc_topology_set_flags(hwloc_topology, HWLOC_TOPOLOGY_FLAG_IS_THISSYSTEM);
- }
- MPL_free(xmlfile);
- }
hwloc_topology_set_io_types_filter(hwloc_topology, HWLOC_TYPE_FILTER_KEEP_ALL);
if (!hwloc_topology_load(hwloc_topology))
--- a/src/mpi/init/local_proc_attrs.c
+++ b/src/mpi/init/local_proc_attrs.c
@@ -79,10 +79,6 @@ int MPII_init_local_proc_attrs(int *p_thread_required)
/* Set the number of tag bits. The device may override this value. */
MPIR_Process.tag_bits = MPIR_TAG_BITS_DEFAULT;
- char *requested_kinds = MPIR_pmi_get_jobattr("PMI_mpi_memory_alloc_kinds");
- MPIR_get_supported_memory_kinds(requested_kinds, &MPIR_Process.memory_alloc_kinds);
- MPL_free(requested_kinds);
-
return mpi_errno;
}

View File

@ -1,45 +1,35 @@
final: prev:
{
# Set MPICH as default
mpi = final.mpich;
bsc = prev.bsc.extend (bscFinal: bscPrev: {
# Set MPICH as default
mpi = bscFinal.mpich;
# Configure the network for MPICH
mpich = with final; let
# pmix comes with the libraries in .out and headers in .dev
pmixAll = symlinkJoin {
name = "pmix-all";
paths = [ pmix.dev pmix.out ];
};
in prev.mpich.overrideAttrs (old: {
patches = [
# See https://github.com/pmodels/mpich/issues/6946
./mpich-fix-hwtopo.patch
];
buildInput = old.buildInputs ++ [
libfabric
pmixAll
];
configureFlags = [
"--enable-shared"
"--enable-sharedlib"
"--with-pm=no"
"--with-device=ch4:ofi"
"--with-pmi=pmix"
"--with-pmix=${pmixAll}"
"--with-libfabric=${libfabric}"
"--enable-g=log"
] ++ lib.optionals (lib.versionAtLeast gfortran.version "10") [
"FFLAGS=-fallow-argument-mismatch" # https://github.com/pmodels/mpich/issues/4300
"FCFLAGS=-fallow-argument-mismatch"
];
# Configure the network for MPICH
mpich = with final; prev.mpich.overrideAttrs (old: {
buildInput = old.buildInputs ++ [
libfabric
pmix
];
configureFlags = [
"--enable-shared"
"--enable-sharedlib"
"--with-pm=no"
"--with-device=ch4:ofi"
"--with-pmi=pmix"
"--with-pmix=${final.pmix}"
"--with-libfabric=${final.libfabric}"
"--enable-g=log"
] ++ lib.optionals (lib.versionAtLeast gfortran.version "10") [
"FFLAGS=-fallow-argument-mismatch" # https://github.com/pmodels/mpich/issues/4300
"FCFLAGS=-fallow-argument-mismatch"
];
});
});
slurm = prev.slurm.overrideAttrs (old: {
patches = (old.patches or []) ++ [
# See https://bugs.schedmd.com/show_bug.cgi?id=19324
./slurm-rank-expansion.patch
];
});
prometheus-slurm-exporter = prev.callPackage ./slurm-exporter.nix { };
# Update ceph to 18.2.0 until it lands in nixpkgs, see:
# https://github.com/NixOS/nixpkgs/pull/247849
inherit (prev.callPackage ./ceph.nix {
lua = prev.lua5_4;
fmt = prev.fmt_8;
}) ceph ceph-client;
}

View File

@ -1,22 +0,0 @@
{ buildGoModule, fetchFromGitHub, lib }:
buildGoModule rec {
pname = "prometheus-slurm-exporter";
version = "0.20";
src = fetchFromGitHub {
rev = version;
owner = "vpenso";
repo = pname;
sha256 = "sha256-KS9LoDuLQFq3KoKpHd8vg1jw20YCNRJNJrnBnu5vxvs=";
};
vendorHash = "sha256-A1dd9T9SIEHDCiVT2UwV6T02BSLh9ej6LC/2l54hgwI=";
doCheck = false;
meta = with lib; {
description = "Prometheus SLURM Exporter";
homepage = "https://github.com/vpenso/prometheus-slurm-exporter";
platforms = platforms.linux;
};
}

View File

@ -1,11 +0,0 @@
--- a/src/plugins/mpi/pmix/pmixp_dmdx.c 2024-03-15 13:05:24.815313882 +0100
+++ b/src/plugins/mpi/pmix/pmixp_dmdx.c 2024-03-15 13:09:53.936900823 +0100
@@ -314,7 +314,7 @@ static void _dmdx_req(buf_t *buf, int no
}
nsptr = pmixp_nspaces_local();
- if (nsptr->ntasks <= rank) {
+ if ((long) nsptr->ntasks <= (long) rank) {
char *nodename = pmixp_info_job_host(nodeid);
PMIXP_ERROR("Bad request from %s: nspace \"%s\" has only %d ranks, asked for %d",
nodename, ns, nsptr->ntasks, rank);

View File

@ -1,21 +0,0 @@
age-encryption.org/v1
-> ssh-ed25519 AY8zKw J00a6ZOhkupkhLU5WQ0kD05HEF4KKsSs2hwjHKbnnHU
J14VoNOCqLpScVO7OLXbqTcLI4tcVUHt5cqY/XQmbGs
-> ssh-ed25519 sgAamA k8R/bSUdvVmlBI6yHPi5NBQPBGM36lPJwsir8DFGgxE
4ZKC3gYvic6AVrNGgNjwztbUzhxP8ViX5O3wFo9wlrk
-> ssh-ed25519 HY2yRg 966xf2fTnA6Wq0uYXbXZQOManqITJcCbQS9LZCGEOh4
Qg5echQSrzqeDqvaMx+5fqi8XyTjAeCsY/UFJX6YnDs
-> ssh-ed25519 tcumPQ e0U2okrGIoUpLfPYjIRx1V92rE3hZW13nJef+l3kBQg
LejAUKBl+tPhwocCF00ZHTzFISnwX8og8GvemiMIcyo
-> ssh-ed25519 JJ1LWg QkzTsPq9Gdh+FNz/a4bDb9LQOreFyxeTC51UNd1fsj0
ayrlKenETfQzH1Z9drVEWqszQebicGVJve0/pCnxAE8
-> ssh-ed25519 CAWG4Q lJLW9+dxvyoD4hYzeXeE/4rzJ6HIeEQOB1+fbhV3xw0
T2RrVCtTuQvya9HiJB7txk3QGrntpsMX9Tt1cyXoW5E
-> ssh-ed25519 MSF3dg JOZkFb2CfqWKvZIz7lYxXWgv8iEVDkQF8hInDMZvknc
MHDWxjUw4dNiC1h4MrU9uKKcI3rwkxABm0+5FYMZkok
-> ~8m;7f-grease
lDIullfC98RhpTZ4Mk87Td+VtPmwPdgz+iIilpKugUkmV5r4Uqd7yE+5ArA6ekr/
G/X4EA
--- Cz4sv9ZunBcVdZCozdTh1zlg1zIASjk2MjYeYfcN9eA
ÊN Å$[H˜ÝQËéŠ
d£š·'­±ö7…·Í²)ÖØÀÊx9yüÐëE¡þÓM7^Ø[ÐMŽ+É&éâö½$8tM¨Ð²

View File

@ -1,9 +0,0 @@
age-encryption.org/v1
-> ssh-ed25519 HY2yRg DQdgCk16Yu524BsrWVf0krnwWzDM6SeaJCgQipOfwCA
Ab9ocqra/UWJZI+QGMlxUhBu5AzqfjPgXl+ENIiHYGs
-> ssh-ed25519 CAWG4Q KF9rGCenb3nf+wyz2hyVs/EUEbsmUs5R+1fBxlCibC8
7++Kxbr3FHVdVfnFdHYdAuR0Tgfd+sRcO6WRss6LhEw
-> ssh-ed25519 MSF3dg aUe4DhRsu4X8CFOEAnD/XM/o/0qHYSB522woCaAVh0I
GRcs5cm2YqA/lGhUtbpboBaz7mfgiLaCr+agaB7vACU
--- 9Q7Ou+Pxq+3RZilCb2dKC/pCFjZEt4rp5KnTUUU7WJ8
1¬Mw4Í ì:Hµ@Á/ägLtMÇ,ßÆ¥ô*¡žzñNV5ˆmÍNŽoÞáj1 $÷TøG_³E{Œ%“‰1ǯ<>îAÛp™

View File

@ -1,9 +0,0 @@
age-encryption.org/v1
-> ssh-ed25519 HY2yRg WvKK6U1wQtx2pbUDfuaUIXTQiCulDkz7hgUCSwMfMzQ
jLktUMqKuVxukqzz++pHOKvmucUQqeKYy5IwBma7KxY
-> ssh-ed25519 CAWG4Q XKGuNNoYFl9bdZzsqYYTY7GsEt5sypLW4R+1uk78NmU
8dIA2GzRAwTGM5CDHSM2BUBsbXzEAUssWUz2PY2PaTg
-> ssh-ed25519 MSF3dg T630RsKuZIF/bp+KITnIIWWHsg6M/VQGqbWQZxqT+AA
SraZcgZJVtmUzHF/XR9J7aK5t5EDNpkC/av/WJUT/G8
--- /12G8pj9sbs591OM/ryhoLnSWWmzYcoqprk9uN/3g18
ä·ù¼Â‡%å]yi"ô<>»LÓ âùH`ªa$Æþ)¦9ve<76>.0úmÉK<EFBFBD>vƒÀ ïu"|1cÞ-%ÔÕ"åWFï¡ÞA«<41>hº$•ºj<eñ¶xÅLx«ç.?œÈâ:L…¬ƒ,ëu»|³F|Õi²äÔ

View File

@ -1,10 +0,0 @@
age-encryption.org/v1
-> ssh-ed25519 HY2yRg 3L1Y5upc5qN6fgiFAox5rD/W8n0eQUv5mT39QAdO5Ac
XkWsmPmzRgHjsvJgsDKJRgHZ7/sBZFmd1Doppj/y390
-> ssh-ed25519 CAWG4Q v03Qr+fckdIpsxvQG/viKxlF8WNpO4XUe//QcPzH4k0
afUwi3ccDCRfUxPDdF7ZkoL+0UX1XwqVtiyabDWjVQk
-> ssh-ed25519 MSF3dg c2hEUk4LslJpiL7v/4UpT8fK7ZiBJ8+uRhZ/vBoRUDE
YX9EpnJpHo1eDsZtapTVY6jD+81kb588Oik4NoY9jro
--- LhUkopNtCsyHCLzEYzBFs+vekOkAR4B3VBaiMF/ZF8w
<EFBFBD>×à»ÂCßHãáàùýy—LØ”ItMèÕåµI×±sMÆ\Í1-±K”ˆ¤‰G:õ™<02>¦
ÝgáºÙbpF¼Ó¶Í%Y·

Binary file not shown.

View File

@ -1,12 +0,0 @@
age-encryption.org/v1
-> ssh-ed25519 HY2yRg d144D+VvxhYgKtH//uD2qNuVnYX6bh74YqkyM3ZjBwU
0IeVmFAf4U8Sm0d01O6ZwJ1V2jl/mSMl4wF0MP5LrIg
-> ssh-ed25519 CAWG4Q H4nKxue/Cj/3KUF5A+/ygHMjjArwgx3SIWwXcqFtyUo
4k5NJkLUrueLYiPkr2LAwQLWmuaOIsDmV/86ravpleU
-> ssh-ed25519 MSF3dg HpgUAFHLPs4w0cdJHqTwf8lySkTeV9O9NnBf49ClDHs
foPIUUgAYe1YSDy6+aMfjN7xv9xud9fDmhRlIztHoEo
-> vLkF\<-grease
3GRT+W8gYSpjl/a6Ix9+g9UJnTpl1ZH/oucfR801vfE8y77DV2Jxz/XJwzxYxKG5
YEhiTGMNbXw/V7E5aVSz6Bdc
--- GtiHKCZdHByq9j0BSLd544PhbEwTN138E8TFdxipeiA
¥¿£„ÝG$Sº¼ƒRAæÀ¾Th]nÄ8<C384>,ùHœsÈïÚ=p¼™Ù'»<>ô+ôjõÓõŒ9±)ñ:”)¸œYâþÑ8³IØõ8:ol<6F>ë<1F>åÃZÐæ3PM”F;ÊrYõ“ÞÛ<1F>­y¸LâÙœ¦ÎœàÕUús16Ǿ¡LŒb÷¨²

View File

@ -1,17 +0,0 @@
let
keys = import ../keys.nix;
adminsKeys = builtins.attrValues keys.admins;
hut = [ keys.hosts.hut ] ++ adminsKeys;
# Only expose ceph keys to safe nodes and admins
safe = keys.hostGroup.safe ++ adminsKeys;
in
{
"gitea-runner-token.age".publicKeys = hut;
"gitlab-runner-docker-token.age".publicKeys = hut;
"gitlab-runner-shell-token.age".publicKeys = hut;
"nix-serve.age".publicKeys = hut;
"jungle-robot-password.age".publicKeys = hut;
"ceph-user.age".publicKeys = safe;
"munge-key.age".publicKeys = safe;
}

View File

@ -17,6 +17,6 @@ Then, to request access to the machines we will need some information about you:
1. The salted hash of your login password, generated with `mkpasswd -m sha-512`
1. An SSH public key of type Ed25519 (can be generated with `ssh-keygen -t ed25519`)
Send an email to <jungle@bsc.es> with the details, or directly open a
merge request in the [jungle
repository](https://pm.bsc.es/gitlab/rarias/jungle/).
You can send us both an email at <rodrigo.arias@bsc.es> and
<aleix.rocanonell@bsc.es> with the details, or directly open a merge request in
the [jungle repository](https://pm.bsc.es/gitlab/rarias/jungle/).

View File

@ -1,6 +0,0 @@
---
title: "Git"
description: "Gitea instance"
---
If you are reading this page, the proxy to the Gitea service is not working.

View File

@ -1,6 +0,0 @@
---
title: "Lists"
description: "Mailing lists"
---
If you are reading this page, the proxy to the public-inbox service is not working.

View File

@ -8,11 +8,3 @@ description: "Low system noise"
Much like the silent flight of an owl at night, these nodes are configured to
minimize the system noise and let programs run undisturbed. The list of nodes is
`owl[1-2]` and are available for jobs with SLURM.
The contents of the nix store of the hut node is made available in the owl nodes
when a job is running. This allows jobs to access the same paths that are on hut
to load dependencies.
For now, only the hut node can be used to build new derivations so that they
appear in the compute nodes. This applies to the `nix build`, `nix develop` and
`nix shell` commands.

View File

@ -1,71 +0,0 @@
---
title: "Update 2023-09-12"
author: "Rodrigo Arias Mallo"
date: 2023-09-12
---
This is a summary of notable changes introduced in the jungle cluster in the
last months.
### New Ceph filesystem available
We have installed the latest [Ceph filesystem][1] (18.2.0) which stores three
redundant copies of the data so a failure in one disk doesn't cause data loss.
It is mounted in /ceph and available for use in the owl1, owl2 and hut
nodes. For now it provides 2.8 TiB of space and it is expected to
increase when the last storage node is installed.
[1]: https://en.wikipedia.org/wiki/Ceph_(software)
The throughput is limited by the 1 Gigabit Ethernet speed, but should be
reasonably fast for most workloads. Here is a test with dd which reaches the
network limit:
```txt
hut% dd if=/dev/urandom of=/ceph/rarias/urandom bs=1M count=1024
1024+0 records in
1024+0 records out
1073741824 bytes (1,1 GB, 1,0 GiB) copied, 8,98544 s, 119 MB/s
```
### SLURM power save
The SLURM daemon has been configured to power down the nodes after one hour of
idling. When a new job is allocated to a node that is powered off, it is
automatically turned on and as soon as it becomes available it will execute the
job. Here is an example with two nodes that boot and execute a simple job that
shows the date.
```txt
hut% date; srun -N 2 date
2023-09-12T17:36:09 CEST
2023-09-12T17:38:26 CEST
2023-09-12T17:38:18 CEST
```
You can expect a similar delay (around 2-3 min) while the nodes are starting.
Notice that while the nodes are kept on, the delay is not noticeable:
```txt
hut% date; srun -N 2 date
2023-09-12T17:40:04 CEST
2023-09-12T17:40:04 CEST
2023-09-12T17:40:04 CEST
```
### Power and temperature monitoring
In the cluster, we monitor the temperature and the power draw of all nodes. This
allows us to understand which machines are not being used and turn them off to
save energy that otherwise would be wasted. Here is an example where some nodes
are powered off to save energy:
![power](./power.png)
We also configured the nodes to work at low CPU frequencies, so the temperature
is kept low to increase the lifespan of the node components. Towards these
goals, we have configured two alerts that trigger when the CPUs of a node
exceeds the limit temperature of 80 °C or when the power draw exceeds 350 W.
By keeping the power consumption and temperatures controlled, we can safely
incorporate more machines that will only be used on demand.

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Before

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View File

@ -2,27 +2,4 @@ baseURL = 'https://jungle.bsc.es/'
languageCode = 'en-us'
title = 'The jungle'
theme = 'PaperMod'
[[menu.main]]
identifier = "grafana"
name = "Grafana"
url = "/grafana/"
weight = 10
[[menu.main]]
identifier = "Git"
name = "Git"
url = "/git/"
weight = 20
[[menu.main]]
identifier = "Lists"
name = "Lists"
url = "/lists/"
weight = 30
[[menu.main]]
identifier = "Posts"
name = "Posts"
url = "/posts/"
weight = 40
sectionPagesMenu = "main"

View File

@ -100,9 +100,9 @@
{{- $separator := or $label_text (not site.Params.disableThemeToggle)}}
{{- with site.Home.AllTranslations }}
<ul class="lang-switch">
{{- if $separator }}<li>|</li>{{ end }}
{{- range . -}}
{{- if ne $lang .Lang }}
{{- if $separator }}<li>|</li>{{ end }}
<li>
<a href="{{- .Permalink -}}" title="{{ .Language.Params.languageAltTitle | default (.Language.LanguageName | emojify) | default (.Lang | title) }}"
aria-label="{{ .Language.LanguageName | default (.Lang | title) }}">

View File

@ -17,5 +17,5 @@
{{- end }}
{{- with ($scratch.Get "meta") }}
{{- delimit . "&nbsp;·&nbsp;" | safeHTML -}}
{{- delimit . "&nbsp;·&nbsp;" -}}
{{- end -}}