Update PM GitLab tokens to new URL

Reviewed-by: Aleix Boné <abonerib@bsc.es>

.gitignore

@@ -1,2 +1,3 @@
 *.swp
 /result
+/misc

flake.lock

@@ -10,11 +10,11 @@
         "systems": "systems"
       },
       "locked": {
-        "lastModified": 1720546205,
-        "narHash": "sha256-boCXsjYVxDviyzoEyAk624600f3ZBo/DKtUdvMTpbGY=",
+        "lastModified": 1723293904,
+        "narHash": "sha256-b+uqzj+Wa6xgMS9aNbX4I+sXeb5biPDi39VgvSFqFvU=",
         "owner": "ryantm",
         "repo": "agenix",
-        "rev": "de96bd907d5fbc3b14fc33ad37d1b9a3cb15edc6",
+        "rev": "f6291c5935fdc4e0bef208cfc0dcab7e3f7a1c41",
         "type": "github"
       },
       "original": {
@@ -30,11 +30,11 @@
         ]
       },
       "locked": {
-        "lastModified": 1713974364,
-        "narHash": "sha256-ilZTVWSaNP1ibhQIIRXE+q9Lj2XOH+F9W3Co4QyY1eU=",
+        "lastModified": 1732868163,
+        "narHash": "sha256-qck4h298AgcNI6BnGhEwl26MTLXjumuJVr+9kak7uPo=",
         "ref": "refs/heads/master",
-        "rev": "de89197a4a7b162db7df9d41c9d07759d87c5709",
-        "revCount": 937,
+        "rev": "6782fc6c5b5a29e84a7f2c2d1064f4bcb1288c0f",
+        "revCount": 952,
         "type": "git",
         "url": "https://git.sr.ht/~rodarima/bscpkgs"
       },
@@ -88,16 +88,16 @@
     },
     "nixpkgs": {
       "locked": {
-        "lastModified": 1720957393,
-        "narHash": "sha256-oedh2RwpjEa+TNxhg5Je9Ch6d3W1NKi7DbRO1ziHemA=",
+        "lastModified": 1736867362,
+        "narHash": "sha256-i/UJ5I7HoqmFMwZEH6vAvBxOrjjOJNU739lnZnhUln8=",
         "owner": "NixOS",
         "repo": "nixpkgs",
-        "rev": "693bc46d169f5af9c992095736e82c3488bf7dbb",
+        "rev": "9c6b49aeac36e2ed73a8c472f1546f6d9cf1addc",
         "type": "github"
       },
       "original": {
         "owner": "NixOS",
-        "ref": "nixos-unstable",
+        "ref": "nixos-24.11",
         "repo": "nixpkgs",
         "type": "github"
       }

flake.nix

@@ -1,6 +1,6 @@
 {
   inputs = {
-    nixpkgs.url = "github:NixOS/nixpkgs/nixos-unstable";
+    nixpkgs.url = "github:NixOS/nixpkgs/nixos-24.11";
     agenix.url = "github:ryantm/agenix";
     agenix.inputs.nixpkgs.follows = "nixpkgs";
     bscpkgs.url = "git+https://git.sr.ht/~rodarima/bscpkgs";

m/common/base/ssh.nix

@@ -13,10 +13,16 @@ in
     Host bscpm02.bsc.es bscpm03.bsc.es gitlab-internal.bsc.es alya.gitlab.bsc.es
       User git
       ProxyCommand nc -X connect -x hut:23080 %h %p
+
+    # Connect to BSC machines via hut proxy too
+    Host amdlogin1.bsc.es armlogin1.bsc.es hualogin1.bsc.es glogin1.bsc.es glogin2.bsc.es fpgalogin1.bsc.es
+      ProxyCommand nc -X connect -x hut:23080 %h %p
   '';
 
   programs.ssh.knownHosts = hostsKeys // {
     "gitlab-internal.bsc.es".publicKey = "ssh-ed25519 AAAAC3NzaC1lZDI1NTE5AAAAIF9arsAOSRB06hdy71oTvJHG2Mg8zfebADxpvc37lZo3";
     "bscpm03.bsc.es".publicKey = "ssh-ed25519 AAAAC3NzaC1lZDI1NTE5AAAAIM2NuSUPsEhqz1j5b4Gqd+MWFnRqyqY57+xMvBUqHYUS";
+    "glogin1.bsc.es".publicKey = "ssh-ed25519 AAAAC3NzaC1lZDI1NTE5AAAAIFsHsZGCrzpd4QDVn5xoDOtrNBkb0ylxKGlyBt6l9qCz";
+    "glogin2.bsc.es".publicKey = "ssh-ed25519 AAAAC3NzaC1lZDI1NTE5AAAAIFsHsZGCrzpd4QDVn5xoDOtrNBkb0ylxKGlyBt6l9qCz";
   };
 }

m/hut/configuration.nix

@@ -1,4 +1,4 @@
-{ config, pkgs, ... }:
+{ config, pkgs, lib, ... }:
 
 {
   imports = [
@@ -17,11 +17,28 @@
     ./gitea.nix
     ./msmtp.nix
     ./postgresql.nix
+    ./nginx.nix
+    ./p.nix
     #./pxe.nix
   ];
 
   # Select the this using the ID to avoid mismatches
-  boot.loader.grub.device = "/dev/disk/by-id/ata-INTEL_SSDSC2BB240G7_PHDV6462004Y240AGN";
+  boot.loader.grub.device = "/dev/disk/by-id/wwn-0x55cd2e414d53567f";
+
+  fileSystems = {
+    "/" = lib.mkForce {
+      device = "/dev/disk/by-label/nvme";
+      fsType = "ext4";
+      neededForBoot = true;
+      options = [ "noatime" ];
+    };
+
+    "/boot" = lib.mkForce {
+      device = "/dev/disk/by-label/nixos-boot";
+      fsType = "ext4";
+      neededForBoot = true;
+    };
+  };
 
   networking = {
     hostName = "hut";

m/hut/gpfs-probe.nix

@@ -0,0 +1,31 @@
+{ pkgs, config, lib, ... }:
+let
+  gpfs-probe-script = pkgs.runCommand "gpfs-probe.sh" { }
+    ''
+      cp ${./gpfs-probe.sh} $out;
+      chmod +x $out
+    ''
+  ;
+in
+{
+  # Use a new user to handle the SSH keys
+  users.groups.ssh-robot = { };
+  users.users.ssh-robot = {
+    description = "SSH Robot";
+    isNormalUser = true;
+    home = "/var/lib/ssh-robot";
+  };
+
+  systemd.services.gpfs-probe = {
+    description = "Daemon to report GPFS latency via SSH";
+    path = [ pkgs.openssh pkgs.netcat ];
+    after = [ "network.target" ];
+    wantedBy = [ "default.target" ];
+    serviceConfig = {
+      Type = "simple";
+      ExecStart = "${pkgs.socat}/bin/socat TCP4-LISTEN:9966,fork EXEC:${gpfs-probe-script}";
+      User = "ssh-robot";
+      Group = "ssh-robot";
+    };
+  };
+}

m/hut/gpfs-probe.sh

@@ -0,0 +1,18 @@
+#!/bin/sh
+
+N=500
+
+t=$(timeout 5 ssh bsc015557@glogin2.bsc.es "timeout 3 command time -f %e touch /gpfs/projects/bsc15/bsc015557/gpfs.{1..$N} 2>&1; rm -f /gpfs/projects/bsc15/bsc015557/gpfs.{1..$N}")
+
+if [ -z "$t" ]; then
+  t="5.00"
+fi
+
+cat <<EOF
+HTTP/1.1 200 OK
+Content-Type: text/plain; version=0.0.4; charset=utf-8; escaping=values
+
+# HELP gpfs_touch_latency Time to create $N files.
+# TYPE gpfs_touch_latency gauge
+gpfs_touch_latency $t
+EOF

m/hut/monitoring.nix

@@ -1,7 +1,10 @@
 { config, lib, ... }:
 
 {
-  imports = [ ../module/slurm-exporter.nix ];
+  imports = [
+    ../module/slurm-exporter.nix
+    ./gpfs-probe.nix
+  ];
 
   age.secrets.grafanaJungleRobotPassword = {
     file = ../../secrets/jungle-robot-password.age;
@@ -76,7 +79,7 @@
       };
       node = {
         enable = true;
-        enabledCollectors = [ "systemd" ];
+        enabledCollectors = [ "systemd" "logind" ];
         port = 9002;
         listenAddress = "127.0.0.1";
       };
@@ -102,6 +105,7 @@
             "127.0.0.1:9252"
             "127.0.0.1:${toString config.services.prometheus.exporters.smartctl.port}"
             "127.0.0.1:9341" # Slurm exporter
+            "127.0.0.1:9966" # GPFS custom exporter
             "127.0.0.1:${toString config.services.prometheus.exporters.blackbox.port}"
           ];
         }];

m/hut/nginx.nix

@@ -0,0 +1,70 @@
+{ theFlake, pkgs, ... }:
+let
+  website = pkgs.stdenv.mkDerivation {
+    name = "jungle-web";
+    src = theFlake;
+    buildInputs = [ pkgs.hugo ];
+    buildPhase = ''
+      cd web
+      rm -rf public/
+      hugo
+    '';
+    installPhase = ''
+      cp -r public $out
+    '';
+  };
+in
+{
+  services.nginx = {
+    enable = true;
+    virtualHosts."jungle.bsc.es" = {
+      root = "${website}";
+      listen = [
+        {
+          addr = "127.0.0.1";
+          port = 80;
+        }
+      ];
+      extraConfig = ''
+        set_real_ip_from 127.0.0.1;
+        set_real_ip_from 84.88.52.107;
+        real_ip_recursive on;
+        real_ip_header X-Forwarded-For;
+
+        location /git {
+          rewrite ^/git$ / break;
+          rewrite ^/git/(.*) /$1 break;
+          proxy_pass http://127.0.0.1:3000;
+          proxy_redirect http:// $scheme://;
+        }
+        location /cache {
+          rewrite ^/cache(.*) /$1 break;
+          proxy_pass http://127.0.0.1:5000;
+          proxy_redirect http:// $scheme://;
+        }
+        location /lists {
+          proxy_pass http://127.0.0.1:8081;
+          proxy_redirect http:// $scheme://;
+        }
+        location /grafana {
+          proxy_pass http://127.0.0.1:2342;
+          proxy_redirect http:// $scheme://;
+          proxy_set_header Host $host;
+          # Websockets
+          proxy_http_version 1.1;
+          proxy_set_header Upgrade $http_upgrade;
+          proxy_set_header Connection "upgrade";
+        }
+        location ~ ^/~(.+?)(/.*)?$ {
+          alias /ceph/home/$1/public_html$2;
+          index  index.html index.htm;
+          autoindex on;
+          absolute_redirect off;
+        }
+        location /p/ {
+          alias /ceph/p/;
+        }
+      '';
+    };
+  };
+}

m/hut/p.nix

@@ -0,0 +1,43 @@
+{ pkgs, lib, config, ... }:
+let
+  p = pkgs.writeShellScriptBin "p" ''
+    set -e
+    cd /ceph
+    pastedir="p/$USER"
+    mkdir -p "$pastedir"
+
+    ext="txt"
+
+    if [ -n "$1" ]; then
+      ext="$1"
+    fi
+
+    out=$(mktemp "$pastedir/XXXXXXXX.$ext")
+
+    cat > "$out"
+    chmod go+r "$out"
+    echo "https://jungle.bsc.es/$out"
+  '';
+in
+{
+  environment.systemPackages = with pkgs; [ p ];
+
+  # Make sure we have a directory per user. We cannot use the nice
+  # systemd-tmpfiles-setup.service service because this is a remote FS, and it
+  # may not be mounted when it runs.
+  systemd.services.create-paste-dirs = let
+    # Take only normal users in hut
+    users = lib.filterAttrs (_: v: v.isNormalUser) config.users.users;
+    commands = lib.concatLists (lib.mapAttrsToList
+      (_: user: [
+        "install -d -o ${user.name} -g ${user.group} -m 0755 /ceph/p/${user.name}"
+      ]) users);
+    script = pkgs.writeShellScript "create-paste-dirs.sh" (lib.concatLines commands);
+  in {
+    enable = true;
+    wants = [ "remote-fs.target" ];
+    after = [ "remote-fs.target" ];
+    wantedBy = [ "multi-user.target" ];
+    serviceConfig.ExecStart = script;
+  };
+}

pkgs/overlay.nix

@@ -11,7 +11,7 @@ final: prev:
       paths = [ pmix.dev pmix.out ];
     };
   in prev.mpich.overrideAttrs (old: {
-    patches = [
+    patches = (old.patches or []) ++ [
       # See https://github.com/pmodels/mpich/issues/6946
       ./mpich-fix-hwtopo.patch
     ];

secrets/gitlab-runner-docker-token.age

@@ -1,9 +1,9 @@
 age-encryption.org/v1
--> ssh-ed25519 HY2yRg WvKK6U1wQtx2pbUDfuaUIXTQiCulDkz7hgUCSwMfMzQ
-jLktUMqKuVxukqzz++pHOKvmucUQqeKYy5IwBma7KxY
--> ssh-ed25519 CAWG4Q XKGuNNoYFl9bdZzsqYYTY7GsEt5sypLW4R+1uk78NmU
-8dIA2GzRAwTGM5CDHSM2BUBsbXzEAUssWUz2PY2PaTg
--> ssh-ed25519 MSF3dg T630RsKuZIF/bp+KITnIIWWHsg6M/VQGqbWQZxqT+AA
-SraZcgZJVtmUzHF/XR9J7aK5t5EDNpkC/av/WJUT/G8
---- /12G8pj9sbs591OM/ryhoLnSWWmzYcoqprk9uN/3g18
-ä·ù
¼Â‡%å]yi"ô<>»LÓâùH`ªa$Æþ)¦9ve<76>.0úmÉK<EFBFBD>vƒÀïu"|1cÞ-%ÔÕ"åWFï¡ÞA«<41>hº$•ºj<eñ¶xÅLx«ç.?œÈâ:L…¬–ƒ,ëu»|³‹F|Õi²äÔ
+-> ssh-ed25519 HY2yRg 0sEIUEJBJQ0k0rBfHaOEbq1pNBqsPin4Xq85v0ds9jY
+4wzjLapoOcq53nT2K3hSGED4jTDXci25GLHkl/fL4EI
+-> ssh-ed25519 CAWG4Q f68ZbJGwXuCZVnqhwbh+8dh0X/MCdjEd+sVtPyBu/hU
+u2TQreyWQvP6PGuwuUNKA/AL68560flqSlaItN3k41I
+-> ssh-ed25519 MSF3dg HdrtRW2j7mfkLH0/4aJK5R0cWdjf56HYtEZgzHi9EAs
+A6MF6tXmSUq2RF2bpmav0GFTRERwluSZGh2snP/KqkA
+--- drsezqi7J/g8gm6N10SkfeAWnYct99WUraB5djLJqpo
+gÔ
(ìÐJ!M6¬É3e¸AÜæÃ?\1y÷eüFN\‘<>/MêòªN`K
^€+"¤«Y^å>dÒH÷°‡¸†]P…ÓûJ‘`xôã»{Ú±ô„y°ÅÎøSˆéy
PX{w‰Sï
ž^5X¶JPô;v‰

web/content/paste/_index.md

@@ -0,0 +1,68 @@
+---
+title: "Paste"
+description: "Paste service"
+author: "Rodrigo Arias Mallo"
+date: 2024-09-20
+---
+
+The hut machine provides a paste service using the program `p` (as in paste).
+
+You can use it directly from the hut machine or remotely if you have [SSH
+access](/access) to hut using the following alias:
+
+```
+alias p="ssh hut p"
+```
+
+You can add it to bashrc or zshrc for persistent installation.
+
+## Usage
+
+The `p` command reads from the standard input, uploads the content to a file
+in the ceph filesystem and prints the URL to access it. It only accepts an
+optional argument, which is the extension of the file that will be stored on
+disk (without the dot). By default it uses the `txt` extension, so plain text
+can be read in the browser directly.
+
+```
+p [extension]
+```
+
+To remove files, go to `/ceph/p/$USER` and remove them manually.
+
+## Examples
+
+Share a text file, in this case the source of p itself:
+
+```
+hut% p < m/hut/p.nix
+https://jungle.bsc.es/p/rarias/okbtG130.txt
+```
+
+Paste the last dmesg lines directly from a pipe:
+
+```
+hut% dmesg | tail -5 | p
+https://jungle.bsc.es/p/rarias/luX4STm9.txt
+```
+
+Upload a PNG picture from a file:
+
+```
+hop% p png < mark-api-cpu.png
+https://jungle.bsc.es/p/rarias/oSRAMVsE.png
+```
+
+Take an screenshot and upload it as a PNG file:
+
+```
+hop% scrot -s - | p png
+https://jungle.bsc.es/p/rarias/SOgK5EV0.png
+```
+
+Upload a directory by creating a tar.gz file on the fly:
+
+```
+hop% tar c ovni | gzip | p tar.gz
+https://jungle.bsc.es/p/rarias/tkwROcTR.tar.gz
+```

web/hugo.toml

@@ -21,8 +21,14 @@ name = "Lists"
 url = "/lists/"
 weight = 30
 
+[[menu.main]]
+identifier = "Paste"
+name = "Paste"
+url = "/paste/"
+weight = 40
+
 [[menu.main]]
 identifier = "Posts"
 name = "Posts"
 url = "/posts/"
-weight = 40
+weight = 50

web/themes/PaperMod/layouts/partials/templates/opengraph.html

@@ -49,4 +49,4 @@
 {{ end }}{{ end }}
 
 {{- /* Facebook Page Admin ID for Domain Insights */}}
-{{- with site.Social.facebook_admin }}<meta property="fb:admins" content="{{ . }}" />{{ end }}
+{{- with site.Params.Social.facebook_admin }}<meta property="fb:admins" content="{{ . }}" />{{ end }}

web/themes/PaperMod/layouts/partials/templates/twitter_cards.html

@@ -28,6 +28,6 @@
 {{- end }}
 <meta name="twitter:title" content="{{ .Title }}"/>
 <meta name="twitter:description" content="{{ with .Description }}{{ . }}{{ else }}{{if .IsPage}}{{ .Summary }}{{ else }}{{ with site.Params.description }}{{ . }}{{ end }}{{ end }}{{ end -}}"/>
-{{ with site.Social.twitter -}}
+{{ with site.Params.Social.twitter -}}
 <meta name="twitter:site" content="@{{ . }}"/>
 {{ end -}}