wip

.gitea/workflows/ci.yaml

@@ -1,15 +0,0 @@
-name: CI
-on:
-  push:
-    branches:
-      - master
-  pull_request:
-    branches:
-      - master
-
-jobs:
-  build:all:
-    runs-on: native
-    steps:
-      - uses: https://gitea.com/ScMi1/checkout@v1.4
-      - run: nix build -L --no-link --print-out-paths .#bsc-ci.all

default.nix

@@ -1,19 +1,11 @@
 let
   bscOverlay = import ./overlay.nix;
 
-  # read flake.lock and determine revision from there
+  # Pin the nixpkgs
-  lock = builtins.fromJSON (builtins.readFile ./flake.lock);
+  nixpkgsPath = import ./nixpkgs.nix;
-  inherit (lock.nodes.nixpkgs.locked) rev narHash;
+
-  fetchedNixpkgs = builtins.fetchTarball {
+  pkgs = import nixpkgsPath {
-    url = "https://github.com/NixOS/nixpkgs/archive/${rev}.tar.gz";
+    overlays = [ bscOverlay ];
-    sha256 = narHash;
   };
-in
+
-{ overlays ? [ ]
+in pkgs
-, nixpkgs ? fetchedNixpkgs
-, ...
-}@attrs:
-import nixpkgs (
-  (builtins.removeAttrs attrs [ "overlays" "nixpkgs" ]) //
-  { overlays = [ bscOverlay ] ++ overlays; }
-)

flake.lock

@@ -2,10 +2,10 @@
   "nodes": {
     "nixpkgs": {
       "locked": {
-        "lastModified": 1752436162,
+        "lastModified": 1736867362,
-        "narHash": "sha256-Kt1UIPi7kZqkSc5HVj6UY5YLHHEzPBkgpNUByuyxtlw=",
+        "narHash": "sha256-i/UJ5I7HoqmFMwZEH6vAvBxOrjjOJNU739lnZnhUln8=",
-        "path": "/nix/store/zk8v61cpk1wprp9ld5ayc1g5fq4pdkwv-source",
+        "path": "/nix/store/2csx2kkb2hxyxhhmg2xs9jfyypikwwk6-source",
-        "rev": "dfcd5b901dbab46c9c6e80b265648481aafb01f8",
+        "rev": "9c6b49aeac36e2ed73a8c472f1546f6d9cf1addc",
         "type": "path"
       },
       "original": {

flake.nix

@@ -2,25 +2,16 @@
   inputs.nixpkgs.url = "nixpkgs";
 
   outputs = { self, nixpkgs, ...}:
-    let
+  let
+    pkgs = import nixpkgs {
       # For now we only support x86
       system = "x86_64-linux";
-      pkgs = import nixpkgs {
+      overlays = [ self.overlays.default ];
-        inherit system;
+    };
-        overlays = [ self.overlays.default ];
+  in
-      };
-    in
     {
       bscOverlay = import ./overlay.nix;
       overlays.default = self.bscOverlay;
-      # full nixpkgs with our overlay applied
+      legacyPackages.x86_64-linux = pkgs;
-      legacyPackages.${system} = pkgs;
-
-      hydraJobs = {
-        inherit (self.legacyPackages.${system}.bsc-ci) tests pkgs cross;
-      };
-
-      # propagate nixpkgs lib, so we can do bscpkgs.lib
-      inherit (nixpkgs) lib;
     };
 }

nixpkgs.nix

@@ -0,0 +1,9 @@
+let
+  commit = "e4ad989506ec7d71f7302cc3067abd82730a4beb";
+in builtins.fetchTarball {
+    # Descriptive name to make the store path easier to identify
+    name = "nixpkgs-${commit}";
+    url = "https://github.com/nixos/nixpkgs/archive/${commit}.tar.gz";
+    # Hash obtained using `nix-prefetch-url --unpack <url>`
+    sha256 = "sha256-de9KYi8rSJpqvBfNwscWdalIJXPo8NjdIZcEJum1mH0=";
+}

overlay.nix

@@ -6,6 +6,9 @@ with final.lib;
 let
   callPackage = final.callPackage;
 
+  mkDeps = name: pkgs: final.runCommand name { }
+    "printf '%s\n' ${toString (collect (x: x ? outPath) pkgs)} > $out";
+
   bscPkgs = {
     bench6 = callPackage ./pkgs/bench6/default.nix { };
     bigotes = callPackage ./pkgs/bigotes/default.nix { };
@@ -18,7 +21,7 @@ let
     gpi-2 = callPackage ./pkgs/gpi-2/default.nix { };
     intelPackages_2023 = callPackage ./pkgs/intel-oneapi/2023.nix { };
     jemallocNanos6 = callPackage ./pkgs/nanos6/jemalloc.nix { };
-    lmbench = callPackage ./pkgs/lmbench/default.nix { };
+    #lmbench = callPackage ./pkgs/lmbench/default.nix { }; # Broken
     mcxx = callPackage ./pkgs/mcxx/default.nix { };
     nanos6 = callPackage ./pkgs/nanos6/default.nix { };
     nanos6Debug = final.nanos6.override { enableDebug = true; };
@@ -43,77 +46,60 @@ let
     stdenvClangOmpss2NodesOmpv = final.stdenv.override { cc = final.clangOmpss2NodesOmpv; allowedRequisites = null; };
     tagaspi = callPackage ./pkgs/tagaspi/default.nix { };
     tampi = callPackage ./pkgs/tampi/default.nix { };
+    vivado = callPackage ./pkgs/vivado/default.nix { };
     wxparaver = callPackage ./pkgs/paraver/default.nix { };
   };
 
-  tests = rec {
-    #hwloc = callPackage ./test/bugs/hwloc.nix { }; # Broken, no /sys
-    #sigsegv = callPackage ./test/reproducers/sigsegv.nix { };
-    hello-c = callPackage ./test/compilers/hello-c.nix { };
-    hello-cpp = callPackage ./test/compilers/hello-cpp.nix { };
-    lto = callPackage ./test/compilers/lto.nix { };
-    asan = callPackage ./test/compilers/asan.nix { };
-    intel2023-icx-c   = hello-c.override   { stdenv = final.intelPackages_2023.stdenv; };
-    intel2023-icc-c   = hello-c.override   { stdenv = final.intelPackages_2023.stdenv-icc; };
-    intel2023-icx-cpp = hello-cpp.override { stdenv = final.intelPackages_2023.stdenv; };
-    intel2023-icc-cpp = hello-cpp.override { stdenv = final.intelPackages_2023.stdenv-icc; };
-    intel2023-ifort   = callPackage ./test/compilers/hello-f.nix {
-      stdenv = final.intelPackages_2023.stdenv-ifort;
-    };
-    clangOmpss2-lto   = lto.override       { stdenv = final.stdenvClangOmpss2Nanos6; };
-    clangOmpss2-asan  = asan.override      { stdenv = final.stdenvClangOmpss2Nanos6; };
-    clangOmpss2-task  = callPackage ./test/compilers/ompss2.nix {
-      stdenv = final.stdenvClangOmpss2Nanos6;
-    };
-    clangNodes-task = callPackage ./test/compilers/ompss2.nix {
-      stdenv = final.stdenvClangOmpss2Nodes;
-    };
-    clangNosvOpenmp-task = callPackage ./test/compilers/clang-openmp.nix {
-      stdenv = final.stdenvClangOmpss2Nodes;
-    };
-    clangNosvOmpv-nosv = callPackage ./test/compilers/clang-openmp-nosv.nix {
-      stdenv = final.stdenvClangOmpss2NodesOmpv;
-    };
-    clangNosvOmpv-ld = callPackage ./test/compilers/clang-openmp-ld.nix {
-      stdenv = final.stdenvClangOmpss2NodesOmpv;
-    };
-  };
-
-  pkgs = filterAttrs (_: isDerivation) bscPkgs;
-
-  crossTargets = [ "riscv64" ];
-  cross = prev.lib.genAttrs crossTargets (target:
-    final.pkgsCross.${target}.bsc-ci.pkgs
-  );
-
-  buildList = name: paths:
-    final.runCommandLocal name { } ''
-      printf '%s\n' ${toString paths} | tee $out
-    '';
-
-  buildList' = name: paths:
-    final.runCommandLocal name { } ''
-      deps="${toString paths}"
-      cat $deps
-      printf '%s\n' $deps >$out
-    '';
-
-  crossList = builtins.mapAttrs (t: v: buildList t (builtins.attrValues v)) cross;
-
-  pkgsList = buildList "ci-pkgs" (builtins.attrValues pkgs);
-  testList = buildList "ci-tests" (collect isDerivation tests);
-
-  all = buildList' "ci-all" [ pkgsList testList ];
-
 in bscPkgs // {
   # Prevent accidental usage of bsc attribute
   bsc = throw "the bsc attribute is deprecated, packages are now in the root";
 
   # Internal for our CI tests
   bsc-ci = {
-    inherit pkgs pkgsList;
+    test = rec {
-    inherit tests testList;
+      #hwloc = callPackage ./test/bugs/hwloc.nix { }; # Broken, no /sys
-    inherit cross crossList;
+      #sigsegv = callPackage ./test/reproducers/sigsegv.nix { };
-    inherit all;
+      hello-c = callPackage ./test/compilers/hello-c.nix { };
+      hello-cpp = callPackage ./test/compilers/hello-cpp.nix { };
+      lto = callPackage ./test/compilers/lto.nix { };
+      asan = callPackage ./test/compilers/asan.nix { };
+      intel2023-icx-c   = hello-c.override   { stdenv = final.intelPackages_2023.stdenv; };
+      intel2023-icc-c   = hello-c.override   { stdenv = final.intelPackages_2023.stdenv-icc; };
+      intel2023-icx-cpp = hello-cpp.override { stdenv = final.intelPackages_2023.stdenv; };
+      intel2023-icc-cpp = hello-cpp.override { stdenv = final.intelPackages_2023.stdenv-icc; };
+      intel2023-ifort   = callPackage ./test/compilers/hello-f.nix {
+        stdenv = final.intelPackages_2023.stdenv-ifort;
+      };
+      clangOmpss2-lto   = lto.override       { stdenv = final.stdenvClangOmpss2Nanos6; };
+      clangOmpss2-asan  = asan.override      { stdenv = final.stdenvClangOmpss2Nanos6; };
+      clangOmpss2-task  = callPackage ./test/compilers/ompss2.nix {
+        stdenv = final.stdenvClangOmpss2Nanos6;
+      };
+      clangNodes-task = callPackage ./test/compilers/ompss2.nix {
+        stdenv = final.stdenvClangOmpss2Nodes;
+      };
+      clangNosvOpenmp-task = callPackage ./test/compilers/clang-openmp.nix {
+        stdenv = final.stdenvClangOmpss2Nodes;
+      };
+      clangNosvOmpv-nosv = callPackage ./test/compilers/clang-openmp-nosv.nix {
+        stdenv = final.stdenvClangOmpss2NodesOmpv;
+      };
+      clangNosvOmpv-ld = callPackage ./test/compilers/clang-openmp-ld.nix {
+        stdenv = final.stdenvClangOmpss2NodesOmpv;
+      };
+    };
+
+    pkgs = final.runCommand "ci-pkgs" { }
+      "printf '%s\n' ${toString (collect isDerivation bscPkgs)} > $out";
+
+    tests = final.runCommand "ci-tests" { }
+      "printf '%s\n' ${toString (collect isDerivation final.bsc-ci.test)} > $out";
+
+    all = final.runCommand "ci-all" { }
+    ''
+      deps="${toString [ final.bsc-ci.pkgs final.bsc-ci.tests ]}"
+      cat $deps
+      printf '%s\n' $deps > $out
+    '';
   };
 }

pkgs/bench6/default.nix

@@ -1,20 +1,14 @@
 {
   stdenv
-, bigotes
 , cmake
 , clangOmpss2
-, openmp
-, openmpv
 , nanos6
 , nodes
-, nosv
 , mpi
 , tampi
-, openblas
-, ovni
 , gitBranch ? "master"
-, gitURL ? "ssh://git@bscpm04.bsc.es/rarias/bench6.git"
+, gitURL ? "ssh://git@bscpm03.bsc.es/rarias/bench6.git"
-, gitCommit ? "bf29a53113737c3aa74d2fe3d55f59868faea7b4"
+, gitCommit ? "1e6ce2aa8ad7b4eef38df1581d7ec48a8815f85d"
 }:
 
 stdenv.mkDerivation rec {
@@ -27,31 +21,9 @@ stdenv.mkDerivation rec {
     rev = gitCommit;
   };
 
-  nativeBuildInputs = [
+  buildInputs = [ cmake clangOmpss2 nanos6 nodes mpi tampi ];
-    cmake
-    clangOmpss2
-  ];
-
-  buildInputs = [
-    bigotes
-    openmp
-    openmpv
-    nanos6
-    nodes
-    nosv
-    mpi
-    tampi
-    openblas
-    openblas.dev
-    ovni
-  ];
-
-  env = {
-    NANOS6_HOME = nanos6;
-    NODES_HOME = nodes;
-    NOSV_HOME = nosv;
-  };
 
+  enableParallelBuilding = false;
   cmakeFlags = [
     "-DCMAKE_C_COMPILER=clang"
     "-DCMAKE_CXX_COMPILER=clang++"

pkgs/bigotes/default.nix

@@ -4,7 +4,7 @@
 , cmake
 }:
 
-stdenv.mkDerivation {
+stdenv.mkDerivation rec {
   pname = "bigotes";
   version = "9dce13";
   src = fetchFromGitHub {
@@ -13,5 +13,5 @@ stdenv.mkDerivation {
     rev = "9dce13446a8da30bea552d569d260d54e0188518";
     sha256 = "sha256-ktxM3pXiL8YXSK+/IKWYadijhYXqGoLY6adLk36iigE=";
   };
-  nativeBuildInputs = [ cmake ];
+  buildInputs = [ cmake ];
 }

pkgs/cn6/default.nix

@@ -28,7 +28,7 @@ stdenv.mkDerivation rec {
   ] ++ optionals (enableTest) [ mpi clangOmpss2 tampi ];
 
   src = builtins.fetchGit {
-    url = "ssh://git@bscpm04.bsc.es/rarias/cn6.git";
+    url = "ssh://git@bscpm03.bsc.es/rarias/cn6.git";
     ref = "master";
     rev = "c72c3b66b720c2a33950f536fc819051c8f20a69";
   };

pkgs/gpi-2/default.nix

@@ -34,8 +34,6 @@ stdenv.mkDerivation rec {
 
   enableParallelBuilding = true;
 
-  patches = [ ./rdma-core.patch ./max-mem.patch ];
-
   preConfigure = ''
     patchShebangs autogen.sh
     ./autogen.sh

pkgs/gpi-2/max-mem.patch

@@ -1,10 +0,0 @@
---- a/tests/tests/segments/max_mem.c	2025-09-12 13:30:53.449353591 +0200
-+++ b/tests/tests/segments/max_mem.c	2025-09-12 13:33:49.750352401 +0200
-@@ -1,5 +1,7 @@
- #include <test_utils.h>
- 
-+gaspi_size_t gaspi_get_system_mem (void);
-+
- /* Test allocates 45% of system memory and creates a segment that
-    large or if several ranks per node exist, divided among that
-    number */

pkgs/gpi-2/rdma-core.patch

@@ -1,12 +0,0 @@
---- a/src/devices/ib/GPI2_IB.h	2025-09-12 13:25:31.564181121 +0200
-+++ b/src/devices/ib/GPI2_IB.h	2025-09-12 13:24:49.105422150 +0200
-@@ -26,6 +26,9 @@ along with GPI-2. If not, see <http://ww
- 
- #include "GPI2_Dev.h"
- 
-+/* Missing prototype as driver.h is now private */
-+int ibv_read_sysfs_file(const char *dir, const char *file, char *buf, size_t size);
-+
- #define GASPI_GID_INDEX   (0)
- #define PORT_LINK_UP      (5)
- #define MAX_INLINE_BYTES  (128)

pkgs/intel-oneapi/2023.nix

@@ -1,5 +1,6 @@
 { stdenv
 , fetchurl
+, ncurses
 , lib
 , dpkg
 , rsync
@@ -9,9 +10,12 @@
 , hwloc
 , zlib
 , autoPatchelfHook
+, symlinkJoin
 , libfabric
-, gcc13
+, gcc
+, gcc7
 , wrapCCWith
+, linuxHeaders
 }:
 
 # The distribution of intel packages is a mess. We are doing the installation
@@ -26,8 +30,6 @@
 
 let
 
-  gcc = gcc13;
-
   v = {
     hpckit   = "2023.1.0";
     compiler = "2023.1.0";
@@ -78,7 +80,7 @@ let
   uncompressDebs = debs: name: stdenv.mkDerivation {
     name = name;
     srcs = debs;
-    nativeBuildInputs = [ dpkg ];
+    buildInputs = [ dpkg ];
     phases = [ "installPhase" ];
     installPhase = ''
       mkdir -p $out
@@ -108,17 +110,14 @@ let
       "intel-oneapi-mpi-${version}"
     ];
 
-    nativeBuildInputs = [
-      autoPatchelfHook
-      rsync
-    ];
-
     buildInputs = [
+      rsync
       libfabric
       zlib
       stdenv.cc.cc.lib
     ];
 
+    nativeBuildInputs = [ autoPatchelfHook ];
     phases = [ "installPhase" "fixupPhase" ];
     dontStrip = true;
     installPhase = ''
@@ -157,6 +156,7 @@ let
 
     buildInputs = [
       intel-mpi
+      rsync
       libffi_3_3
       libelf
       libxml2
@@ -164,10 +164,7 @@ let
       stdenv.cc.cc.lib
     ];
 
-    nativeBuildInputs = [
+    nativeBuildInputs = [ autoPatchelfHook ];
-      autoPatchelfHook
-      rsync
-    ];
     phases = [ "installPhase" "fixupPhase" ];
     dontStrip = true;
 
@@ -197,6 +194,7 @@ let
     buildInputs = [
       intel-mpi
       intel-tbb
+      rsync
       libffi_3_3
       libelf
       libxml2
@@ -205,10 +203,7 @@ let
       stdenv.cc.cc.lib
     ];
 
-    nativeBuildInputs = [
+    nativeBuildInputs = [ autoPatchelfHook ];
-      autoPatchelfHook
-      rsync
-    ];
     phases = [ "installPhase" "fixupPhase" ];
     dontStrip = true;
 
@@ -261,6 +256,7 @@ let
     buildInputs = [
       intel-mpi
       intel-compiler-shared
+      rsync
       libffi_3_3
       libelf
       libxml2
@@ -268,10 +264,7 @@ let
       stdenv.cc.cc.lib
     ];
 
-    nativeBuildInputs = [
+    nativeBuildInputs = [ autoPatchelfHook ];
-      autoPatchelfHook
-      rsync
-    ];
 
     phases = [ "installPhase" "fixupPhase" ];
 
@@ -321,7 +314,6 @@ let
       "intel-oneapi-compiler-dpcpp-cpp-and-cpp-classic-runtime-${version}"
       "intel-oneapi-compiler-dpcpp-cpp-classic-fortran-shared-runtime-${version}"
     ];
-    dontCheckForBrokenSymlinks = true;
     # From https://aur.archlinux.org/packages/intel-oneapi-compiler:
     # - intel-oneapi-compiler-cpp-eclipse-cfg-2023.0.0-25370_all.deb
     # + intel-oneapi-compiler-dpcpp-cpp-2023.0.0-2023.0.0-25370_amd64.deb
@@ -346,6 +338,7 @@ let
 
     buildInputs = [
       intel-compiler-shared
+      rsync
       libffi_3_3
       libelf
       libxml2
@@ -353,10 +346,7 @@ let
       stdenv.cc.cc.lib
     ];
 
-    nativeBuildInputs = [
+    nativeBuildInputs = [ autoPatchelfHook ];
-      autoPatchelfHook
-      rsync
-    ];
     autoPatchelfIgnoreMissingDeps = [ "libtbb.so.12" "libtbbmalloc.so.2" "libze_loader.so.1" ];
 
     phases = [ "installPhase" "fixupPhase" ];
@@ -409,9 +399,7 @@ let
         echo "-L${cc}/lib" >> $out/nix-support/cc-ldflags
 
         # Need the gcc in the path
-        # FIXME: We should find a better way to modify the PATH instead of using
+        echo 'export "PATH=${mygcc}/bin:$PATH"' >> $out/nix-support/cc-wrapper-hook
-        # this ugly hack. See https://jungle.bsc.es/git/rarias/bscpkgs/issues/9
-        echo 'path_backup="${mygcc}/bin:$path_backup"' >> $out/nix-support/cc-wrapper-hook
 
         # Disable hardening by default
         echo "" > $out/nix-support/add-hardening.sh

pkgs/llvm-ompss2/clang.nix

@@ -14,21 +14,21 @@
 , gcc # needed to set the rpath of libstdc++ for clang-tblgen
 , enableDebug ? false
 , useGit ? false
-, gitUrl ? "ssh://git@bscpm04.bsc.es/llvm-ompss/llvm-mono.git"
+, gitUrl ? "ssh://git@bscpm03.bsc.es/llvm-ompss/llvm-mono.git"
 , gitBranch ? "master"
-, gitCommit ? "880e2341c56bad1dc14e8c369fb3356bec19018e"
+, gitCommit ? "8c0d267c04d7fc3fb923078f510fcd5f4719a6cc"
 }:
 
 let
   stdenv = llvmPackages_latest.stdenv;
 
   release = rec {
-    version = "2025.06";
+    version = "2024.11";
     src = fetchFromGitHub {
       owner = "bsc-pm";
       repo = "llvm";
       rev = "refs/tags/github-release-${version}";
-      hash = "sha256-ww9PpRmtz/M9IyLiZ8rAehx2UW4VpQt+svf4XfKBzKo=";
+      hash = "sha256-pF0qa987nLkIJPUrXh1srzBkLPfb31skIegD0bl34Kg=";
     };
   };
 
@@ -43,36 +43,32 @@ let
 
   source = if (useGit) then git else release;
 
-in stdenv.mkDerivation {
+in stdenv.mkDerivation rec {
   pname = "clang-ompss2";
   inherit (source) src version;
 
   enableParallelBuilding = true;
+  isClang = true;
 
   passthru = {
     CC = "clang";
     CXX = "clang++";
-
-    isClang = true;
-    isClangWithOmpss = true;
-
-    inherit gcc zlib;
   };
 
-  nativeBuildInputs = [
+  isClangWithOmpss = true;
-    bash
+
-    cmake
+  nativeBuildInputs = [ zlib ];
-    elfutils
-    llvmPackages_latest.lld
-    pkg-config
-    python3
-    perl
-    which
-    zlib
-  ];
 
   buildInputs = [
+    which
+    bash
+    python3
+    perl
+    cmake
+    llvmPackages_latest.lld
+    elfutils
     libffi
+    pkg-config
     zlib
     gcc.cc.lib # Required for libstdc++.so.6
   ];

pkgs/llvm-ompss2/default.nix

@@ -9,14 +9,12 @@
 , ompss2rt ? null
 }:
 
-with lib;
-
 let
   usingNodesAndOmpv = (openmp.pname == "openmp-v" && ompss2rt.pname == "nodes");
   sameNosv = openmp.nosv == ompss2rt.nosv;
 in
 
-assert assertMsg (usingNodesAndOmpv -> sameNosv) "OpenMP-V and NODES must share the same nOS-V";
+assert lib.assertMsg (usingNodesAndOmpv -> sameNosv) "OpenMP-V and NODES must share the same nOS-V";
 
 let
   homevar = if ompss2rt.pname == "nanos6" then "NANOS6_HOME" else "NODES_HOME";
@@ -36,15 +34,14 @@ let
   targetConfig = stdenv.targetPlatform.config;
   inherit gcc;
   cc = clangOmpss2Unwrapped;
-  gccVersion = with versions; let v = gcc.version; in concatStringsSep "." [(major v) (minor v) (patch v)];
 in wrapCCWith {
   inherit cc bintools;
   # extraPackages adds packages to depsTargetTargetPropagated
-  extraPackages = optional (openmp != null) openmp;
+  extraPackages = lib.optional (openmp != null) openmp;
   extraBuildCommands = ''
     echo "-target ${targetConfig}" >> $out/nix-support/cc-cflags
-    echo "-B${gcc.cc}/lib/gcc/${targetConfig}/${gccVersion}" >> $out/nix-support/cc-cflags
+    echo "-B${gcc.cc}/lib/gcc/${targetConfig}/${gcc.version}" >> $out/nix-support/cc-cflags
-    echo "-L${gcc.cc}/lib/gcc/${targetConfig}/${gccVersion}" >> $out/nix-support/cc-ldflags
+    echo "-L${gcc.cc}/lib/gcc/${targetConfig}/${gcc.version}" >> $out/nix-support/cc-ldflags
     echo "-L${gcc.cc.lib}/lib" >> $out/nix-support/cc-ldflags
 
     for dir in ${gcc.cc}/include/c++/*; do
@@ -58,12 +55,12 @@ in wrapCCWith {
 
     wrap clang++  $wrapper $ccPath/clang++
 
-  '' + optionalString (openmp != null) ''
+  '' + lib.optionalString (openmp != null) ''
     echo "export OPENMP_RUNTIME=${ompname}" >> $out/nix-support/cc-wrapper-hook
-  '' + optionalString (ompss2rt != null) ''
+  '' + lib.optionalString (ompss2rt != null) ''
     echo "export OMPSS2_RUNTIME=${rtname}" >> $out/nix-support/cc-wrapper-hook
     echo "export ${homevar}=${ompss2rt}"   >> $out/nix-support/cc-wrapper-hook
-  '' + optionalString (ompss2rt != null && ompss2rt.pname == "nodes") ''
+  '' + lib.optionalString (ompss2rt != null && ompss2rt.pname == "nodes") ''
     echo "export NOSV_HOME=${ompss2rt.nosv}" >> $out/nix-support/cc-wrapper-hook
   '';
 }

pkgs/llvm-ompss2/openmp.nix

@@ -68,7 +68,6 @@ stdenv.mkDerivation rec {
     rm -f $out/lib/libiomp*
   '' + lib.optionalString enableNosv ''
     rm -f $out/lib/libomp.*
-    rm -f $out/libllvmrt/libomp.*
   '';
 
   passthru = {

pkgs/lmbench/default.nix

@@ -1,41 +1,35 @@
 {
   lib,
   stdenv,
-  libtirpc,
   fetchFromGitHub
 }:
 
 stdenv.mkDerivation rec {
   pname = "lmbench";
-  version = "941a0dcc";
+  version = "701c6c35";
 
   # We use the intel repo as they have fixed some problems
   src = fetchFromGitHub {
     owner = "intel";
     repo = pname;
-    rev = "941a0dcc0e7bdd9bb0dee05d7f620e77da8c43af";
+    rev = "701c6c35b0270d4634fb1dc5272721340322b8ed";
-    sha256 = "sha256-SzwplRBO3V0R3m3p15n71ivYBMGoLsajFK2TapYxdqk=";
+    sha256 = "0sf6zk03knkardsfd6qx7drpm56nhg53n885cylkggk83r38idyr";
   };
 
+  postUnpack = ''
+    export sourceRoot="$sourceRoot/src"
+  '';
+
   postPatch = ''
     sed -i "s@/bin/rm@rm@g" $(find . -name Makefile)
   '';
 
-  buildInputs = [ libtirpc ];
-  patches = [ ./fix-install.patch ./gcc-14.patch ];
-
   hardeningDisable = [ "all" ];
 
   enableParallelBuilding = false;
 
   preBuild = ''
-    makeFlagsArray+=(
+    makeFlagsArray+=(BASE=$out)
-      -C src
-      BASE=$out
-      CFLAGS=-Wno-implicit-int
-      CPPFLAGS=-I${libtirpc.dev}/include/tirpc
-      LDFLAGS=-ltirpc
-    )
   '';
 
   meta = {

pkgs/lmbench/fix-install.patch

@@ -1,10 +0,0 @@
---- a/src/Makefile
-+++ b/src/Makefile
-@@ -144,6 +144,7 @@ install-target:
- 	if [ ! -d $(BASE)/include ]; then mkdir $(BASE)/include; fi
- 	if [ ! -d $(BASE)/lib ]; then mkdir $(BASE)/lib; fi
- 	cp $(EXES) $(BASE)/bin
-+	cp $(OPT_EXES) $(BASE)/bin
- 	cp $(INCS) $(BASE)/include
- 	cp $O/lmbench.a $(BASE)/lib/libmbench.a
- 	cd ../doc; env MAKEFLAGS="$(MAKEFLAGS)" make CC="${CC}" OS="${OS}" BASE="$(BASE)" install

pkgs/lmbench/gcc-14.patch

@@ -1,77 +0,0 @@
-From a3c6e7d303cd8368e8d4e35be7cbc1997e801257 Mon Sep 17 00:00:00 2001
-From: Rodrigo Arias Mallo <rodrigo.arias@bsc.es>
-Date: Mon, 21 Jul 2025 17:38:58 +0200
-Subject: [PATCH] Misc fixes to build with gcc 14
-
----
- src/bench.h      | 2 ++
- src/lat_select.c | 2 +-
- src/lib_debug.c  | 1 +
- src/lib_sched.c  | 2 +-
- src/lib_timing.c | 2 +-
- 5 files changed, 6 insertions(+), 3 deletions(-)
-
-diff --git a/src/bench.h b/src/bench.h
-index 8166408..4da9079 100644
---- a/src/bench.h
-+++ b/src/bench.h
-@@ -320,4 +320,6 @@ extern int handle_scheduler(int childno, int benchproc, int nbenchprocs);
- extern char *rpc_xact_1();
- extern char *client_rpc_xact_1();
- 
-+void lmbench_usage(int argc, char *argv[], char* usage);
-+
- #endif /* _BENCH_H */
-diff --git a/src/lat_select.c b/src/lat_select.c
-index 583b505..39df369 100644
---- a/src/lat_select.c
-+++ b/src/lat_select.c
-@@ -164,7 +164,7 @@ doit(iter_t iterations, void * cookie)
- 	state_t * 	state = (state_t *)cookie;
- 	fd_set		nosave;
- 	static struct timeval tv;
--	static count = 0;
-+	static int count = 0;
- 	
- 	tv.tv_sec = 0;
- 	tv.tv_usec = 0;
-diff --git a/src/lib_debug.c b/src/lib_debug.c
-index e8347dd..cf65312 100644
---- a/src/lib_debug.c
-+++ b/src/lib_debug.c
-@@ -1,5 +1,6 @@
- #include "bench.h"
- #include "lib_debug.h"
-+#include <math.h>
- 
- /*
-  * return micro-seconds / iteration at the the fraction point.
-diff --git a/src/lib_sched.c b/src/lib_sched.c
-index aa83ae0..4f16bbf 100644
---- a/src/lib_sched.c
-+++ b/src/lib_sched.c
-@@ -91,7 +91,7 @@ handle_scheduler(int childno, int benchproc, int nbenchprocs)
- 			     childno * (nbenchprocs + 1) + benchproc);
- 	} else {
- 		/* default action: do nothing */
--		return;
-+		return 0;
- 	}
- 
- 	return sched_pin(cpu % sched_ncpus());
-diff --git a/src/lib_timing.c b/src/lib_timing.c
-index af8cf68..7ec9652 100644
---- a/src/lib_timing.c
-+++ b/src/lib_timing.c
-@@ -1623,7 +1623,7 @@ bread(void* buf, long nbytes)
- void
- touch(char *buf, int nbytes)
- {
--	static	psize;
-+	static int psize;
- 
- 	if (!psize) {
- 		psize = getpagesize();
--- 
-2.49.0
-

pkgs/mcxx/default.nix

@@ -32,20 +32,17 @@ stdenv.mkDerivation rec {
 
   enableParallelBuilding = true;
 
-  nativeBuildInputs = [
+  buildInputs = [
     autoreconfHook
-    bison
+    nanos6
-    flex
+    gperf
     python3
     gfortran
     pkg-config
-    gperf
-    gcc
-  ];
-
-  buildInputs = [
-    nanos6
     sqlite.dev
+    bison
+    flex
+    gcc
   ];
 
   patches = [ ./intel.patch ];

pkgs/mcxx/git.nix

@@ -23,7 +23,7 @@ stdenv.mkDerivation rec {
   };
 
   src = builtins.fetchGit {
-    url = "ssh://git@bscpm04.bsc.es/mercurium/mcxx";
+    url = "ssh://git@bscpm03.bsc.es/mercurium/mcxx";
     ref = "master";
   };
 

pkgs/mcxx/rarias.nix

@@ -19,7 +19,7 @@ stdenv.mkDerivation rec {
 
   #src = /home/Computational/rarias/mcxx;
   src = builtins.fetchGit {
-    url = "ssh://git@bscpm04.bsc.es/rarias/mcxx";
+    url = "ssh://git@bscpm03.bsc.es/rarias/mcxx";
     rev = "44129a6ac05b8f78b06e9e2eff71438b5ca4d29f";
   };
 

pkgs/nanos6/default.nix

@@ -17,9 +17,9 @@
 , cachelineBytes ? 64
 , enableGlibcxxDebug ? false
 , useGit ? false
-, gitUrl ? "ssh://git@bscpm04.bsc.es/nanos6/nanos6"
+, gitUrl ? "ssh://git@bscpm03.bsc.es/nanos6/nanos6"
 , gitBranch ? "master"
-, gitCommit ? "f82762b66c82b5174a8eaad33f6c2f335ac759b4"
+, gitCommit ? "9f54c988e0a8b9c011d9d526acdb8d76f18fcae4"
 }:
 
 assert enableJemalloc -> (jemallocNanos6 != null);
@@ -28,12 +28,12 @@ with lib;
 
 let
   release = rec {
-    version = "4.3";
+    version = "4.2";
     src = fetchFromGitHub {
       owner = "bsc-pm";
       repo = "nanos6";
       rev = "version-${version}";
-      hash = "sha256-/c6WiKBsAo/01uvMRmjv0PMucbrgvaGmbxlPE6q+dfE=";
+      hash = "sha256-tBrRGLCjSFYdmVGPAC2DzYY6HJyZGUOMeykujafn7+4=";
     };
   };
 
@@ -48,7 +48,7 @@ let
 
   source = if (useGit) then git else release;
 in
-  stdenv.mkDerivation (source // {
+  stdenv.mkDerivation (source // rec {
     pname = "nanos6";
 
     prePatch = ''
@@ -62,7 +62,7 @@ in
       export CACHELINE_WIDTH=${toString cachelineBytes}
       ./autogen.sh
     '' + lib.optionalString (useGit) ''
-      export NANOS6_GIT_VERSION=${gitCommit}
+      export NANOS6_GIT_VERSION=${src.rev}
       export NANOS6_GIT_BRANCH=${gitBranch}
     '';
 
@@ -88,19 +88,11 @@ in
     dontStrip = enableDebug;
     separateDebugInfo = true;
 
-    nativeBuildInputs = [
+    buildInputs = [
       autoconf
       automake
       libtool
       pkg-config
-
-      # TODO: papi_version is needed for configure:
-      # ./configure: line 27378: papi_version: command not found
-      # This probably breaks cross-compilation
-      papi
-    ];
-
-    buildInputs = [
       boost
       numactl
       hwloc
@@ -112,7 +104,7 @@ in
     postInstall = ''
       mkdir -p $out/nix-support
       echo "export NANOS6_HOME=$out" >> $out/nix-support/setup-hook
-    '';
+    ''; 
 
     meta = with lib; {
       homepage = "https://github.com/bsc-pm/nanos6";

pkgs/nixtools/default.nix

@@ -7,7 +7,7 @@ stdenv.mkDerivation rec {
   pname = "nixtools";
   version = "${src.shortRev}";
   src = builtins.fetchGit {
-    url = "ssh://git@bscpm04.bsc.es/rarias/nixtools";
+    url = "ssh://git@bscpm03.bsc.es/rarias/nixtools";
     ref = "master";
     rev = "a103e392048ace3ed88ce74648b32c9e6ed094da";
   };

pkgs/nosv/default.nix

@@ -6,26 +6,24 @@
 , pkg-config
 , numactl
 , hwloc
-, papi
-, enablePapi ? true
 , cacheline ? 64 # bits
 , ovni ? null
 , useGit ? false
 , gitUrl ? "git@gitlab-internal.bsc.es:nos-v/nos-v.git"
 , gitBranch ? "master"
-, gitCommit ? "9f47063873c3aa9d6a47482a82c5000a8c813dd8"
+, gitCommit ? "cfd361bd1dd30c96da405e6bbaa7e78f5f93dfda"
 }:
 
 with lib;
 
 let
   release = rec {
-    version = "3.2.0";
+    version = "3.1.0";
     src = fetchFromGitHub {
       owner = "bsc-pm";
       repo = "nos-v";
       rev = "${version}";
-      hash = "sha256-yaz92426EM8trdkBJlISmAoG9KJCDTvoAW/HKrasvOw=";
+      hash = "sha256-Pkre+ZZsREDxJLCoIoPN1HQDuUa2H1IQyKB3omg6qaU=";
     };
   };
 
@@ -58,5 +56,5 @@ in
       numactl
       hwloc
       ovni
-    ] ++ lib.optionals enablePapi [ papi ];
+    ];
   }

pkgs/osu/default.nix

@@ -24,10 +24,9 @@ stdenv.mkDerivation rec {
 
   doCheck = true;
   enableParallelBuilding = true;
-  nativeBuildInputs = [ mpiAll ];
   buildInputs = [ mpiAll ];
   hardeningDisable = [ "all" ];
-  configureFlags = [
+  configureFlags = [ 
       "CC=mpicc"
       "CXX=mpicxx"
   ];
@@ -41,7 +40,7 @@ stdenv.mkDerivation rec {
 
   meta = {
     description = "OSU Micro-Benchmarks";
-    homepage = "http://mvapich.cse.ohio-state.edu/benchmarks/";
+    homepage = http://mvapich.cse.ohio-state.edu/benchmarks/;
     maintainers = [ ];
     platforms = lib.platforms.all;
   };

pkgs/ovni/default.nix

@@ -6,22 +6,24 @@
 , fetchFromGitHub
 , useGit ? false
 , gitBranch ? "master"
-, gitUrl ? "ssh://git@bscpm04.bsc.es/rarias/ovni.git"
+, gitUrl ? "ssh://git@bscpm03.bsc.es/rarias/ovni.git"
-, gitCommit ? "e4f62382076f0cf0b1d08175cf57cc0bc51abc61"
+, gitCommit ? "a7103f8510d1ec124c3e01ceb47d1e443e98bbf4"
 , enableDebug ? false
 # Only enable MPI if the build is native (fails on cross-compilation)
 , useMpi ? (stdenv.buildPlatform.canExecute stdenv.hostPlatform)
 }:
 
+with lib;
+
 let
   release = rec {
-    version = "1.12.0";
+    version = "1.11.0";
     src = fetchFromGitHub {
       owner = "bsc-pm";
       repo = "ovni";
       rev = "${version}";
-      hash = "sha256-H04JvsVKrdqr3ON7JhU0g17jjlg/jzQ7eTfx9vUNd3E=";
+      hash = "sha256-DEZUK1dvbPGH5WYkZ2hpP5PShkMxXkHOqMwgYUHHxeM=";
-    } // { shortRev = "a73afcf"; };
+    } // { shortRev = "a7103f8"; };
   };
 
   git = rec {
@@ -43,7 +45,7 @@ in
     postPatch = ''
       patchShebangs --build test/
     '';
-    nativeBuildInputs = [ cmake ] ++ lib.optionals (useMpi) [ mpi ];
+    nativeBuildInputs = [ cmake ];
     buildInputs = lib.optionals (useMpi) [ mpi ];
     cmakeBuildType = if (enableDebug) then "Debug" else "Release";
     cmakeFlags = [

pkgs/paraver/default.nix

@@ -1,6 +1,5 @@
 {
   stdenv
-, fetchFromGitHub
 , autoreconfHook
 , boost
 , libxml2
@@ -19,23 +18,14 @@ let
 in
 stdenv.mkDerivation rec {
   pname = "wxparaver";
-  version = "4.12.0";
+  version = "4.11.2";
 
-  src = fetchFromGitHub {
+  src = builtins.fetchGit {
-    owner = "bsc-performance-tools";
+    url = "https://github.com/bsc-performance-tools/wxparaver.git";
-    repo = "wxparaver";
+    rev = "129e6b4a4f061e5a319049db8db1620f5de3bd70"; # v4.11.2 (missing tag)
-    rev = "v${version}";
+    ref = "master";
-    sha256 = "sha256-YsO5gsuEFQdki3lQudEqgo5WXOt/fPdvNw5OxZQ86Zo=";
   };
 
-  patches = [
-    ./do-not-steal-focus-on-redraw.patch
-
-    # Fix for boost >=1.87 (thanks to gamezelda)
-    # https://aur.archlinux.org/cgit/aur.git/commit/?h=wxparaver&id=b0dcd08c472536e0a1a3cc1dfbc4c77d9f5e0d47
-    ./fix-boost-87.patch
-  ];
-
   hardeningDisable = [ "all" ];
 
   # Fix the PARAVER_HOME variable
@@ -60,17 +50,17 @@ stdenv.mkDerivation rec {
   ];
 
   nativeBuildInputs = [
-    autoconf
-    automake
-    autoreconfHook
     wrapGAppsHook
   ];
 
   buildInputs = [
+    autoreconfHook
     boost
     libxml2.dev
     xml2
     wx
+    autoconf
+    automake
     paraverKernel
     openssl.dev
   ];

pkgs/paraver/do-not-steal-focus-on-redraw.patch

@@ -1,26 +0,0 @@
-From 2b185e1b5ce52808b3026334851dbcd5a640ed4d Mon Sep 17 00:00:00 2001
-From: aleixbonerib <aleix.boneribo@bsc.es>
-Date: Mon, 10 Jun 2024 20:59:45 +0200
-Subject: [PATCH] fix: do not set focus on redraw
-
-Some wm can change the window size without focusing. Right now, when the
-plot is resized it takes back focus.
----
- src/gtimeline.cpp | 1 -
- 1 file changed, 1 deletion(-)
-
-diff --git a/src/gtimeline.cpp b/src/gtimeline.cpp
-index 23ebef2..a896066 100644
---- a/src/gtimeline.cpp
-+++ b/src/gtimeline.cpp
-@@ -899,7 +899,6 @@ void gTimeline::redraw()
- 
-   drawZone->Refresh();
- 
--  SetFocus();
- }
- 
- 
--- 
-2.44.1
-

pkgs/paraver/dont-expand-colors.patch

@@ -11,7 +11,7 @@ diff --git a/api/semanticcolor.cpp b/api/semanticcolor.cpp
 index 9f86960..22859eb 100644
 --- a/api/semanticcolor.cpp
 +++ b/api/semanticcolor.cpp
-@@ -295,8 +295,9 @@ rgb SemanticColor::getColor( PRV_UINT32 pos ) const
+@@ -232,8 +232,9 @@ rgb CodeColor::getColor( PRV_UINT32 pos ) const
  {
    if( pos == 0 && ParaverConfig::getInstance()->getColorsTimelineUseZero() )
      return ParaverConfig::getInstance()->getColorsTimelineColorZero();
@@ -22,26 +22,26 @@ index 9f86960..22859eb 100644
 +  return colors[ pos + 1 ];
  }
  
- void SemanticColor::setColor( PRV_UINT32 whichPos, rgb whichColor )
+ void CodeColor::setColor( PRV_UINT32 whichPos, rgb whichColor )
-@@ -314,6 +315,12 @@ void SemanticColor::setColor( PRV_UINT32 whichPos, rgb whichColor )
+@@ -250,6 +251,12 @@ void CodeColor::setColor( PRV_UINT32 whichPos, rgb whichColor )
    colors[ whichPos ] = whichColor;
  }
  
-+void SemanticColor::cutAfter( PRV_UINT32 pos )
++void CodeColor::cutAfter( PRV_UINT32 pos )
 +{
 +  if ( pos < colors.size() )
 +    colors.erase( colors.begin() + pos, colors.end() );
 +}
 +
- void SemanticColor::setCustomColor( TSemanticValue whichValue, rgb color ) 
+ void CodeColor::setCustomColor( TSemanticValue whichValue, rgb color ) 
  {
    customPalette[ whichValue ] = color;
 diff --git a/api/semanticcolor.h b/api/semanticcolor.h
 index a079556..bddf3d8 100644
 --- a/api/semanticcolor.h
 +++ b/api/semanticcolor.h
-@@ -114,6 +114,7 @@ class SemanticColor
+@@ -98,6 +98,7 @@ class CodeColor: public SemanticColor
-     // Code Color methods
+ 
      PRV_UINT32 getNumColors() const;
      void setColor( PRV_UINT32 pos, rgb color );
 +    void cutAfter( PRV_UINT32 pos );
@@ -61,7 +61,7 @@ index b0d2050..ee2ab69 100644
    for ( auto it : semanticColors )
    {
      std::tie( tmpColor.red, tmpColor.green, tmpColor.blue ) = it.second;
-     mySemanticColor.setColor( it.first, tmpColor );
+     myCodeColor.setColor( it.first, tmpColor );
 +	if (it.first > maxValue)
 +      maxValue = it.first;
    }
@@ -69,7 +69,7 @@ index b0d2050..ee2ab69 100644
 +  // Cut the palette after the highest defined value, so there are no
 +  // extra expanded values
 +  if ( !pcfParser.expandColors )
-+	mySemanticColor.cutAfter(maxValue);
++	myCodeColor.cutAfter(maxValue);
 +
    myEventLabels = EventLabels( pcfParser );
    myStateLabels = StateLabels( pcfParser );

pkgs/paraver/fix-boost-87.patch

@@ -1,87 +0,0 @@
-From 7ecd888e2ebb9e8c5582851d3c50bff61022708e Mon Sep 17 00:00:00 2001
-From: =?UTF-8?q?Joan=20Bruguera=20Mic=C3=B3?= <joanbrugueram@gmail.com>
-Date: Sat, 29 Mar 2025 18:14:25 +0000
-Subject: [PATCH] tutorialsdownload: Fix Boost ASIO 1.87.0 removals
-
----
- src/tutorialsdownload.cpp | 25 ++++++++++++-------------
- 1 file changed, 12 insertions(+), 13 deletions(-)
-
-diff --git a/src/tutorialsdownload.cpp b/src/tutorialsdownload.cpp
-index a1921fd..6ce9dc2 100644
---- a/src/tutorialsdownload.cpp
-+++ b/src/tutorialsdownload.cpp
-@@ -121,13 +121,13 @@ void TutorialsProgress::updateInstall( int whichValue )
- class client
- {
-   public:
--    client( boost::asio::io_service& io_service,
-+    client( boost::asio::io_context& io_context,
-             boost::asio::ssl::context& context,
-             const std::string& server, const std::string& path,
-             ofstream& storeFile,
-             TutorialsProgress *progress )
--            : resolver_( io_service ),
--              socket_( io_service, context ),
-+            : resolver_( io_context ),
-+              socket_( io_context, context ),
-               store_( storeFile ),
-               progress_( progress )
-     {
-@@ -143,8 +143,7 @@ class client
- 
-         // Start an asynchronous resolve to translate the server and service names
-         // into a list of endpoints.
--        tcp::resolver::query query( server, "https" );
--        resolver_.async_resolve( query,
-+        resolver_.async_resolve( server, "https",
-                                  boost::bind( &client::handle_resolve,
-                                               this,
-                                               boost::asio::placeholders::error,
-@@ -154,7 +153,7 @@ class client
-   private:
- 
-     void handle_resolve( const boost::system::error_code& err,
--                         tcp::resolver::iterator endpoint_iterator )
-+                         const tcp::resolver::results_type& endpoints )
-     {
-       if ( !err )
-       {
-@@ -162,7 +161,7 @@ class client
-         socket_.set_verify_callback( boost::bind( &client::verify_certificate, this, _1, _2 ) );
- 
-         boost::asio::async_connect( socket_.lowest_layer(), 
--                                    endpoint_iterator,
-+                                    endpoints,
-                                     boost::bind( &client::handle_connect, 
-                                                  this,
-                                                  boost::asio::placeholders::error ) );
-@@ -536,9 +535,9 @@ bool TutorialsDownload::downloadTutorialsList() const
-     boost::asio::ssl::context ctx( boost::asio::ssl::context::sslv23 );
-     ctx.set_default_verify_paths();
- 
--    boost::asio::io_service io_service;
--    client c( io_service, ctx, server, path, storeFile, nullptr );
--    io_service.run();
-+    boost::asio::io_context io_context;
-+    client c( io_context, ctx, server, path, storeFile, nullptr );
-+    io_context.run();
- 
-     doneDownload = true;
-   }
-@@ -580,9 +579,9 @@ bool TutorialsDownload::download( const TutorialData& whichTutorial, string& tut
-     boost::asio::ssl::context ctx( boost::asio::ssl::context::sslv23 );
-     ctx.set_default_verify_paths();
- 
--    boost::asio::io_service io_service;
--    client c( io_service, ctx, std::string( server.mb_str() ), std::string( path.mb_str() ), storeFile, &progress );
--    io_service.run();
-+    boost::asio::io_context io_context;
-+    client c( io_context, ctx, std::string( server.mb_str() ), std::string( path.mb_str() ), storeFile, &progress );
-+    io_context.run();
-   }
-   catch ( ParaverKernelException& e )
-   {
--- 
-2.49.0
-

pkgs/paraver/fix-libxml2-deprecation.patch

@@ -1,23 +0,0 @@
-commit 60aa3ffa05f6b40db191a880e9e622d608744c1f
-Author: Aleix Boné <aleix.boneribo@bsc.es>
-Date:   Sun Jul 21 12:11:30 2025 +0200
-
-    fix libxml2 deprecated macro
-
-diff --git a/configure.ac b/configure.ac
-index 7fe1876..3ce1091 100644
---- a/configure.ac
-+++ b/configure.ac
-@@ -46,7 +46,10 @@ AC_PROG_CPP
- AC_PROG_CXXCPP
- AC_PROG_SED
- 
--AM_PATH_XML2
-+PKG_PROG_PKG_CONFIG
-+PKG_CHECK_MODULES([XML], [libxml-2.0])
-+
-+AC_SUBST(XML_CPPFLAGS, $XML_CFLAGS)
- 
- AX_BOOST_BASE(1.36)
- AX_BOOST_SERIALIZATION
-

pkgs/paraver/kernel.nix

@@ -1,32 +1,32 @@
 {
   stdenv
-, fetchFromGitHub
 , autoreconfHook
 , boost
 , libxml2
 , xml2
+, wxGTK32
 , autoconf
 , automake
 , pkg-config
 , zlib
 }:
 
+let
+  wx = wxGTK32;
+in
 stdenv.mkDerivation rec {
   pname = "paraver-kernel";
-  version = "4.12.0";
+  version = "${src.shortRev}";
 
-  src = fetchFromGitHub {
+  src = builtins.fetchGit {
-    owner = "bsc-performance-tools";
+    url = "https://github.com/bsc-performance-tools/paraver-kernel.git";
-    repo = "paraver-kernel";
+    rev = "2e167da3cee78ca11e31b74faefb23f12bac2b8c"; # master (missing tag)
-    rev = "v${version}";
+    ref = "master";
-    sha256 = "sha256-Xs7g8ITZhPt00v7o2WlTddbou8C8Rc9kBMFpl2WsCS4=";
   };
 
   patches = [
     # https://github.com/bsc-performance-tools/paraver-kernel/pull/11
-    # TODO: add this back if it's still relevant
+    ./dont-expand-colors.patch
-    # ./dont-expand-colors.patch
-    ./fix-libxml2-deprecation.patch
   ];
 
   hardeningDisable = [ "all" ];
@@ -44,17 +44,14 @@ stdenv.mkDerivation rec {
     "--enable-openmp"
   ];
 
-  nativeBuildInputs = [
-    autoreconfHook
-    autoconf
-    automake
-    pkg-config
-  ];
-
   buildInputs = [
+    autoreconfHook
     boost
     libxml2.dev
     xml2
+    autoconf
+    automake
+    pkg-config
     zlib
   ];
 }

pkgs/paraver/release.nix

@@ -61,16 +61,13 @@ stdenv.mkDerivation rec {
     "--with-wx-config=${wx}/bin/wx-config"
   ];
 
-  nativeBuildInputs = [
-    autoconf
-    automake
-  ];
-
   buildInputs = [
     boost
     xml2
     libxml2.dev
     wx
+    autoconf
+    automake
     openssl.dev
   ];
 

pkgs/sonar/default.nix

@@ -18,12 +18,8 @@ stdenv.mkDerivation rec {
   hardeningDisable = [ "all" ];
   dontStrip = true;
   configureFlags = [ "--with-ovni=${ovni}" ];
-
-  nativeBuildInputs = [
-    autoreconfHook
-  ];
-
   buildInputs = [
+    autoreconfHook
     ovni
     mpi
   ];

pkgs/tampi/default.nix

@@ -8,13 +8,14 @@
 , gnumake
 , boost
 , mpi
+, gcc
 , autoreconfHook
 , enableOvni ? true
 , ovni ? null
 , useGit ? false
-, gitUrl ? "ssh://git@bscpm04.bsc.es/interoperability/tampi.git"
+, gitUrl ? "ssh://git@bscpm03.bsc.es/interoperability/tampi.git"
 , gitBranch ? "master"
-, gitCommit ? "f6455db9d3124ae36e715a4874fd49720e79f20a"
+, gitCommit ? "a5c93bf8ab045b71ad4a8d5e2c991ce774db5cbc"
 }:
 
 with lib;
@@ -23,12 +24,12 @@ assert enableOvni -> (ovni != null);
 
 let
   release = rec {
-    version = "4.1";
+    version = "4.0";
     src = fetchFromGitHub {
       owner = "bsc-pm";
       repo = "tampi";
       rev = "v${version}";
-      hash = "sha256-SwfPSnwcZnRnSgNvCD5sFSUJRpWINqI5I4adj5Hh+XY=";
+      hash = "sha256-R7ew5tsrxGReTvOeeZe1FD0oThBhOHoDGv6Mo2sbmDg=";
     };
   };
   git = rec {
@@ -40,23 +41,20 @@ let
     };
   };
   source = if (useGit) then git else release;
-in stdenv.mkDerivation {
+in stdenv.mkDerivation rec {
   pname = "tampi";
   inherit (source) src version;
   enableParallelBuilding = true;
   separateDebugInfo = true;
-
-  nativeBuildInputs = [
-    autoconf
-    automake
-    autoreconfHook
-    gnumake
-    libtool
-  ];
-
   buildInputs = [
+    autoreconfHook
+    automake
+    autoconf
+    libtool
+    gnumake
     boost
     mpi
+    gcc
   ] ++ optional (enableOvni) ovni;
   configureFlags = optional (enableOvni) "--with-ovni=${ovni}";
   dontDisableStatic = true;

pkgs/vivado/default.nix

@@ -0,0 +1,55 @@
+# Thanks to MLabs to made the switch.
+
+{
+  stdenv
+, lib
+, ncurses5
+, libxcrypt-legacy
+, zlib
+, libuuid
+, xorg
+, freetype
+, fontconfig
+, buildFHSEnv
+}:
+
+with lib;
+
+let
+  vivadoDeps = pkgs:
+    let
+      # Apply patch from https://github.com/nix-community/nix-environments/pull/54
+      # to fix ncurses libtinfo.so's soname issue
+      ncurses' = ncurses5.overrideAttrs (old: {
+        configureFlags = old.configureFlags ++ ["--with-termlib"];
+        postFixup = "";
+      });
+    in [
+      libxcrypt-legacy
+      (ncurses'.override {unicodeSupport = false;})
+      zlib
+      libuuid
+      xorg.libSM
+      xorg.libICE
+      xorg.libXrender
+      xorg.libX11
+      xorg.libXext
+      xorg.libXtst
+      xorg.libXi
+      freetype
+      fontconfig
+    ];
+
+  vivadoEnv = buildFHSEnv {
+    name = "vivado-env";
+    targetPkgs = vivadoDeps;
+  };
+
+  vivado = buildFHSEnv {
+    name = "vivado";
+    targetPkgs = vivadoDeps;
+    profile = "set -e; source /opt/Xilinx/Vivado/2024.2/settings64.sh";
+    runScript = "vivado";
+  };
+in
+  vivadoEnv