Fix lmbench build issues with GCC 14

Reviewed-by: Aleix Boné <abonerib@bsc.es>
Tested-by: Rodrigo Arias Mallo <rodrigo.arias@bsc.es>

.gitea/workflows/ci.yaml

@@ -1,15 +0,0 @@
-name: CI
-on:
-  push:
-    branches:
-      - master
-  pull_request:
-    branches:
-      - master
-
-jobs:
-  build:all:
-    runs-on: native
-    steps:
-      - uses: https://gitea.com/ScMi1/checkout@v1.4
-      - run: nix build -L --no-link --print-out-paths .#bsc-ci.all

flake.nix

@@ -3,24 +3,15 @@
 
   outputs = { self, nixpkgs, ...}:
   let
+    pkgs = import nixpkgs {
       # For now we only support x86
       system = "x86_64-linux";
-      pkgs = import nixpkgs {
-        inherit system;
       overlays = [ self.overlays.default ];
     };
   in
     {
       bscOverlay = import ./overlay.nix;
       overlays.default = self.bscOverlay;
-      # full nixpkgs with our overlay applied
+      legacyPackages.x86_64-linux = pkgs;
-      legacyPackages.${system} = pkgs;
-
-      hydraJobs = {
-        inherit (self.legacyPackages.${system}.bsc-ci) tests pkgs cross;
-      };
-
-      # propagate nixpkgs lib, so we can do bscpkgs.lib
-      inherit (nixpkgs) lib;
     };
 }

overlay.nix

@@ -6,6 +6,9 @@ with final.lib;
 let
   callPackage = final.callPackage;
 
+  mkDeps = name: pkgs: final.runCommand name { }
+    "printf '%s\n' ${toString (collect (x: x ? outPath) pkgs)} > $out";
+
   bscPkgs = {
     bench6 = callPackage ./pkgs/bench6/default.nix { };
     bigotes = callPackage ./pkgs/bigotes/default.nix { };
@@ -15,7 +18,7 @@ let
     clangOmpss2NodesOmpv = callPackage ./pkgs/llvm-ompss2/default.nix { ompss2rt = final.nodes; openmp = final.openmpv; };
     clangOmpss2Unwrapped = callPackage ./pkgs/llvm-ompss2/clang.nix { };
     #extrae = callPackage ./pkgs/extrae/default.nix { }; # Broken and outdated
-    gpi-2 = callPackage ./pkgs/gpi-2/default.nix { };
+    #gpi-2 = callPackage ./pkgs/gpi-2/default.nix { }; # Broken: https://jungle.bsc.es/git/rarias/bscpkgs/issues/7
     intelPackages_2023 = callPackage ./pkgs/intel-oneapi/2023.nix { };
     jemallocNanos6 = callPackage ./pkgs/nanos6/jemalloc.nix { };
     lmbench = callPackage ./pkgs/lmbench/default.nix { };
@@ -41,12 +44,18 @@ let
     stdenvClangOmpss2Nanos6 = final.stdenv.override { cc = final.clangOmpss2Nanos6; allowedRequisites = null; };
     stdenvClangOmpss2Nodes = final.stdenv.override { cc = final.clangOmpss2Nodes; allowedRequisites = null; };
     stdenvClangOmpss2NodesOmpv = final.stdenv.override { cc = final.clangOmpss2NodesOmpv; allowedRequisites = null; };
-    tagaspi = callPackage ./pkgs/tagaspi/default.nix { };
+    #tagaspi = callPackage ./pkgs/tagaspi/default.nix { }; # Broken due gpi-2
     tampi = callPackage ./pkgs/tampi/default.nix { };
     wxparaver = callPackage ./pkgs/paraver/default.nix { };
   };
 
-  tests = rec {
+in bscPkgs // {
+  # Prevent accidental usage of bsc attribute
+  bsc = throw "the bsc attribute is deprecated, packages are now in the root";
+
+  # Internal for our CI tests
+  bsc-ci = {
+    test = rec {
       #hwloc = callPackage ./test/bugs/hwloc.nix { }; # Broken, no /sys
       #sigsegv = callPackage ./test/reproducers/sigsegv.nix { };
       hello-c = callPackage ./test/compilers/hello-c.nix { };
@@ -79,41 +88,17 @@ let
       };
     };
 
-  pkgs = filterAttrs (_: isDerivation) bscPkgs;
+    pkgs = final.runCommand "ci-pkgs" { }
+      "printf '%s\n' ${toString (collect isDerivation bscPkgs)} > $out";
 
-  crossTargets = [ "riscv64" ];
+    tests = final.runCommand "ci-tests" { }
-  cross = prev.lib.genAttrs crossTargets (target:
+      "printf '%s\n' ${toString (collect isDerivation final.bsc-ci.test)} > $out";
-    final.pkgsCross.${target}.bsc-ci.pkgs
-  );
 
-  buildList = name: paths:
+    all = final.runCommand "ci-all" { }
-    final.runCommandLocal name { } ''
+    ''
-      printf '%s\n' ${toString paths} | tee $out
+      deps="${toString [ final.bsc-ci.pkgs final.bsc-ci.tests ]}"
-    '';
-
-  buildList' = name: paths:
-    final.runCommandLocal name { } ''
-      deps="${toString paths}"
       cat $deps
       printf '%s\n' $deps > $out
     '';
-
-  crossList = builtins.mapAttrs (t: v: buildList t (builtins.attrValues v)) cross;
-
-  pkgsList = buildList "ci-pkgs" (builtins.attrValues pkgs);
-  testList = buildList "ci-tests" (collect isDerivation tests);
-
-  all = buildList' "ci-all" [ pkgsList testList ];
-
-in bscPkgs // {
-  # Prevent accidental usage of bsc attribute
-  bsc = throw "the bsc attribute is deprecated, packages are now in the root";
-
-  # Internal for our CI tests
-  bsc-ci = {
-    inherit pkgs pkgsList;
-    inherit tests testList;
-    inherit cross crossList;
-    inherit all;
   };
 }

pkgs/bench6/default.nix

@@ -27,13 +27,10 @@ stdenv.mkDerivation rec {
     rev = gitCommit;
   };
 
-  nativeBuildInputs = [
-    cmake
-    clangOmpss2
-  ];
-
   buildInputs = [
     bigotes
+    cmake
+    clangOmpss2
     openmp
     openmpv
     nanos6

pkgs/bigotes/default.nix

@@ -4,7 +4,7 @@
 , cmake
 }:
 
-stdenv.mkDerivation {
+stdenv.mkDerivation rec {
   pname = "bigotes";
   version = "9dce13";
   src = fetchFromGitHub {
@@ -13,5 +13,5 @@ stdenv.mkDerivation {
     rev = "9dce13446a8da30bea552d569d260d54e0188518";
     sha256 = "sha256-ktxM3pXiL8YXSK+/IKWYadijhYXqGoLY6adLk36iigE=";
   };
-  nativeBuildInputs = [ cmake ];
+  buildInputs = [ cmake ];
 }

pkgs/gpi-2/default.nix

@@ -34,8 +34,6 @@ stdenv.mkDerivation rec {
 
   enableParallelBuilding = true;
 
-  patches = [ ./rdma-core.patch ./max-mem.patch ];
-
   preConfigure = ''
     patchShebangs autogen.sh
     ./autogen.sh

pkgs/gpi-2/max-mem.patch

@@ -1,10 +0,0 @@
---- a/tests/tests/segments/max_mem.c	2025-09-12 13:30:53.449353591 +0200
-+++ b/tests/tests/segments/max_mem.c	2025-09-12 13:33:49.750352401 +0200
-@@ -1,5 +1,7 @@
- #include <test_utils.h>
- 
-+gaspi_size_t gaspi_get_system_mem (void);
-+
- /* Test allocates 45% of system memory and creates a segment that
-    large or if several ranks per node exist, divided among that
-    number */

pkgs/gpi-2/rdma-core.patch

@@ -1,12 +0,0 @@
---- a/src/devices/ib/GPI2_IB.h	2025-09-12 13:25:31.564181121 +0200
-+++ b/src/devices/ib/GPI2_IB.h	2025-09-12 13:24:49.105422150 +0200
-@@ -26,6 +26,9 @@ along with GPI-2. If not, see <http://ww
- 
- #include "GPI2_Dev.h"
- 
-+/* Missing prototype as driver.h is now private */
-+int ibv_read_sysfs_file(const char *dir, const char *file, char *buf, size_t size);
-+
- #define GASPI_GID_INDEX   (0)
- #define PORT_LINK_UP      (5)
- #define MAX_INLINE_BYTES  (128)

pkgs/intel-oneapi/2023.nix

@@ -78,7 +78,7 @@ let
   uncompressDebs = debs: name: stdenv.mkDerivation {
     name = name;
     srcs = debs;
-    nativeBuildInputs = [ dpkg ];
+    buildInputs = [ dpkg ];
     phases = [ "installPhase" ];
     installPhase = ''
       mkdir -p $out
@@ -108,17 +108,14 @@ let
       "intel-oneapi-mpi-${version}"
     ];
 
-    nativeBuildInputs = [
-      autoPatchelfHook
-      rsync
-    ];
-
     buildInputs = [
+      rsync
       libfabric
       zlib
       stdenv.cc.cc.lib
     ];
 
+    nativeBuildInputs = [ autoPatchelfHook ];
     phases = [ "installPhase" "fixupPhase" ];
     dontStrip = true;
     installPhase = ''
@@ -157,6 +154,7 @@ let
 
     buildInputs = [
       intel-mpi
+      rsync
       libffi_3_3
       libelf
       libxml2
@@ -164,10 +162,7 @@ let
       stdenv.cc.cc.lib
     ];
 
-    nativeBuildInputs = [
+    nativeBuildInputs = [ autoPatchelfHook ];
-      autoPatchelfHook
-      rsync
-    ];
     phases = [ "installPhase" "fixupPhase" ];
     dontStrip = true;
 
@@ -197,6 +192,7 @@ let
     buildInputs = [
       intel-mpi
       intel-tbb
+      rsync
       libffi_3_3
       libelf
       libxml2
@@ -205,10 +201,7 @@ let
       stdenv.cc.cc.lib
     ];
 
-    nativeBuildInputs = [
+    nativeBuildInputs = [ autoPatchelfHook ];
-      autoPatchelfHook
-      rsync
-    ];
     phases = [ "installPhase" "fixupPhase" ];
     dontStrip = true;
 
@@ -261,6 +254,7 @@ let
     buildInputs = [
       intel-mpi
       intel-compiler-shared
+      rsync
       libffi_3_3
       libelf
       libxml2
@@ -268,10 +262,7 @@ let
       stdenv.cc.cc.lib
     ];
 
-    nativeBuildInputs = [
+    nativeBuildInputs = [ autoPatchelfHook ];
-      autoPatchelfHook
-      rsync
-    ];
 
     phases = [ "installPhase" "fixupPhase" ];
 
@@ -346,6 +337,7 @@ let
 
     buildInputs = [
       intel-compiler-shared
+      rsync
       libffi_3_3
       libelf
       libxml2
@@ -353,10 +345,7 @@ let
       stdenv.cc.cc.lib
     ];
 
-    nativeBuildInputs = [
+    nativeBuildInputs = [ autoPatchelfHook ];
-      autoPatchelfHook
-      rsync
-    ];
     autoPatchelfIgnoreMissingDeps = [ "libtbb.so.12" "libtbbmalloc.so.2" "libze_loader.so.1" ];
 
     phases = [ "installPhase" "fixupPhase" ];

pkgs/llvm-ompss2/clang.nix

@@ -43,36 +43,32 @@ let
 
   source = if (useGit) then git else release;
 
-in stdenv.mkDerivation {
+in stdenv.mkDerivation rec {
   pname = "clang-ompss2";
   inherit (source) src version;
 
   enableParallelBuilding = true;
+  isClang = true;
 
   passthru = {
     CC = "clang";
     CXX = "clang++";
-
-    isClang = true;
-    isClangWithOmpss = true;
-
-    inherit gcc zlib;
   };
 
-  nativeBuildInputs = [
+  isClangWithOmpss = true;
-    bash
+
-    cmake
+  nativeBuildInputs = [ zlib ];
-    elfutils
-    llvmPackages_latest.lld
-    pkg-config
-    python3
-    perl
-    which
-    zlib
-  ];
 
   buildInputs = [
+    which
+    bash
+    python3
+    perl
+    cmake
+    llvmPackages_latest.lld
+    elfutils
     libffi
+    pkg-config
     zlib
     gcc.cc.lib # Required for libstdc++.so.6
   ];

pkgs/mcxx/default.nix

@@ -32,20 +32,17 @@ stdenv.mkDerivation rec {
 
   enableParallelBuilding = true;
 
-  nativeBuildInputs = [
+  buildInputs = [
     autoreconfHook
-    bison
+    nanos6
-    flex
+    gperf
     python3
     gfortran
     pkg-config
-    gperf
-    gcc
-  ];
-
-  buildInputs = [
-    nanos6
     sqlite.dev
+    bison
+    flex
+    gcc
   ];
 
   patches = [ ./intel.patch ];

pkgs/nanos6/default.nix

@@ -88,19 +88,11 @@ in
     dontStrip = enableDebug;
     separateDebugInfo = true;
 
-    nativeBuildInputs = [
+    buildInputs = [
       autoconf
       automake
       libtool
       pkg-config
-
-      # TODO: papi_version is needed for configure:
-      # ./configure: line 27378: papi_version: command not found
-      # This probably breaks cross-compilation
-      papi
-    ];
-
-    buildInputs = [
       boost
       numactl
       hwloc

pkgs/nosv/default.nix

@@ -6,8 +6,6 @@
 , pkg-config
 , numactl
 , hwloc
-, papi
-, enablePapi ? true
 , cacheline ? 64 # bits
 , ovni ? null
 , useGit ? false
@@ -58,5 +56,5 @@ in
       numactl
       hwloc
       ovni
-    ] ++ lib.optionals enablePapi [ papi ];
+    ];
   }

pkgs/osu/default.nix

@@ -24,7 +24,6 @@ stdenv.mkDerivation rec {
 
   doCheck = true;
   enableParallelBuilding = true;
-  nativeBuildInputs = [ mpiAll ];
   buildInputs = [ mpiAll ];
   hardeningDisable = [ "all" ];
   configureFlags = [ 
@@ -41,7 +40,7 @@ stdenv.mkDerivation rec {
 
   meta = {
     description = "OSU Micro-Benchmarks";
-    homepage = "http://mvapich.cse.ohio-state.edu/benchmarks/";
+    homepage = http://mvapich.cse.ohio-state.edu/benchmarks/;
     maintainers = [ ];
     platforms = lib.platforms.all;
   };

pkgs/ovni/default.nix

@@ -13,6 +13,8 @@
 , useMpi ? (stdenv.buildPlatform.canExecute stdenv.hostPlatform)
 }:
 
+with lib;
+
 let
   release = rec {
     version = "1.12.0";
@@ -43,7 +45,7 @@ in
     postPatch = ''
       patchShebangs --build test/
     '';
-    nativeBuildInputs = [ cmake ] ++ lib.optionals (useMpi) [ mpi ];
+    nativeBuildInputs = [ cmake ];
     buildInputs = lib.optionals (useMpi) [ mpi ];
     cmakeBuildType = if (enableDebug) then "Debug" else "Release";
     cmakeFlags = [

pkgs/paraver/default.nix

@@ -1,8 +1,7 @@
 {
   stdenv
-, fetchFromGitHub
 , autoreconfHook
-, boost
+, boost186
 , libxml2
 , xml2
 , wxGTK32
@@ -16,26 +15,18 @@
 
 let
   wx = wxGTK32;
+  boost = boost186;
 in
 stdenv.mkDerivation rec {
   pname = "wxparaver";
-  version = "4.12.0";
+  version = "4.11.2";
 
-  src = fetchFromGitHub {
+  src = builtins.fetchGit {
-    owner = "bsc-performance-tools";
+    url = "https://github.com/bsc-performance-tools/wxparaver.git";
-    repo = "wxparaver";
+    rev = "129e6b4a4f061e5a319049db8db1620f5de3bd70"; # v4.11.2 (missing tag)
-    rev = "v${version}";
+    ref = "master";
-    sha256 = "sha256-YsO5gsuEFQdki3lQudEqgo5WXOt/fPdvNw5OxZQ86Zo=";
   };
 
-  patches = [
-    ./do-not-steal-focus-on-redraw.patch
-
-    # Fix for boost >=1.87 (thanks to gamezelda)
-    # https://aur.archlinux.org/cgit/aur.git/commit/?h=wxparaver&id=b0dcd08c472536e0a1a3cc1dfbc4c77d9f5e0d47
-    ./fix-boost-87.patch
-  ];
-
   hardeningDisable = [ "all" ];
 
   # Fix the PARAVER_HOME variable
@@ -60,17 +51,17 @@ stdenv.mkDerivation rec {
   ];
 
   nativeBuildInputs = [
-    autoconf
-    automake
-    autoreconfHook
     wrapGAppsHook
   ];
 
   buildInputs = [
+    autoreconfHook
     boost
     libxml2.dev
     xml2
     wx
+    autoconf
+    automake
     paraverKernel
     openssl.dev
   ];

pkgs/paraver/do-not-steal-focus-on-redraw.patch

@@ -1,26 +0,0 @@
-From 2b185e1b5ce52808b3026334851dbcd5a640ed4d Mon Sep 17 00:00:00 2001
-From: aleixbonerib <aleix.boneribo@bsc.es>
-Date: Mon, 10 Jun 2024 20:59:45 +0200
-Subject: [PATCH] fix: do not set focus on redraw
-
-Some wm can change the window size without focusing. Right now, when the
-plot is resized it takes back focus.
----
- src/gtimeline.cpp | 1 -
- 1 file changed, 1 deletion(-)
-
-diff --git a/src/gtimeline.cpp b/src/gtimeline.cpp
-index 23ebef2..a896066 100644
---- a/src/gtimeline.cpp
-+++ b/src/gtimeline.cpp
-@@ -899,7 +899,6 @@ void gTimeline::redraw()
- 
-   drawZone->Refresh();
- 
--  SetFocus();
- }
- 
- 
--- 
-2.44.1
-

pkgs/paraver/dont-expand-colors.patch

@@ -11,7 +11,7 @@ diff --git a/api/semanticcolor.cpp b/api/semanticcolor.cpp
 index 9f86960..22859eb 100644
 --- a/api/semanticcolor.cpp
 +++ b/api/semanticcolor.cpp
-@@ -295,8 +295,9 @@ rgb SemanticColor::getColor( PRV_UINT32 pos ) const
+@@ -232,8 +232,9 @@ rgb CodeColor::getColor( PRV_UINT32 pos ) const
  {
    if( pos == 0 && ParaverConfig::getInstance()->getColorsTimelineUseZero() )
      return ParaverConfig::getInstance()->getColorsTimelineColorZero();
@@ -22,26 +22,26 @@ index 9f86960..22859eb 100644
 +  return colors[ pos + 1 ];
  }
  
- void SemanticColor::setColor( PRV_UINT32 whichPos, rgb whichColor )
+ void CodeColor::setColor( PRV_UINT32 whichPos, rgb whichColor )
-@@ -314,6 +315,12 @@ void SemanticColor::setColor( PRV_UINT32 whichPos, rgb whichColor )
+@@ -250,6 +251,12 @@ void CodeColor::setColor( PRV_UINT32 whichPos, rgb whichColor )
    colors[ whichPos ] = whichColor;
  }
  
-+void SemanticColor::cutAfter( PRV_UINT32 pos )
++void CodeColor::cutAfter( PRV_UINT32 pos )
 +{
 +  if ( pos < colors.size() )
 +    colors.erase( colors.begin() + pos, colors.end() );
 +}
 +
- void SemanticColor::setCustomColor( TSemanticValue whichValue, rgb color ) 
+ void CodeColor::setCustomColor( TSemanticValue whichValue, rgb color ) 
  {
    customPalette[ whichValue ] = color;
 diff --git a/api/semanticcolor.h b/api/semanticcolor.h
 index a079556..bddf3d8 100644
 --- a/api/semanticcolor.h
 +++ b/api/semanticcolor.h
-@@ -114,6 +114,7 @@ class SemanticColor
+@@ -98,6 +98,7 @@ class CodeColor: public SemanticColor
-     // Code Color methods
+ 
      PRV_UINT32 getNumColors() const;
      void setColor( PRV_UINT32 pos, rgb color );
 +    void cutAfter( PRV_UINT32 pos );
@@ -61,7 +61,7 @@ index b0d2050..ee2ab69 100644
    for ( auto it : semanticColors )
    {
      std::tie( tmpColor.red, tmpColor.green, tmpColor.blue ) = it.second;
-     mySemanticColor.setColor( it.first, tmpColor );
+     myCodeColor.setColor( it.first, tmpColor );
 +	if (it.first > maxValue)
 +      maxValue = it.first;
    }
@@ -69,7 +69,7 @@ index b0d2050..ee2ab69 100644
 +  // Cut the palette after the highest defined value, so there are no
 +  // extra expanded values
 +  if ( !pcfParser.expandColors )
-+	mySemanticColor.cutAfter(maxValue);
++	myCodeColor.cutAfter(maxValue);
 +
    myEventLabels = EventLabels( pcfParser );
    myStateLabels = StateLabels( pcfParser );

pkgs/paraver/fix-boost-87.patch

@@ -1,87 +0,0 @@
-From 7ecd888e2ebb9e8c5582851d3c50bff61022708e Mon Sep 17 00:00:00 2001
-From: =?UTF-8?q?Joan=20Bruguera=20Mic=C3=B3?= <joanbrugueram@gmail.com>
-Date: Sat, 29 Mar 2025 18:14:25 +0000
-Subject: [PATCH] tutorialsdownload: Fix Boost ASIO 1.87.0 removals
-
----
- src/tutorialsdownload.cpp | 25 ++++++++++++-------------
- 1 file changed, 12 insertions(+), 13 deletions(-)
-
-diff --git a/src/tutorialsdownload.cpp b/src/tutorialsdownload.cpp
-index a1921fd..6ce9dc2 100644
---- a/src/tutorialsdownload.cpp
-+++ b/src/tutorialsdownload.cpp
-@@ -121,13 +121,13 @@ void TutorialsProgress::updateInstall( int whichValue )
- class client
- {
-   public:
--    client( boost::asio::io_service& io_service,
-+    client( boost::asio::io_context& io_context,
-             boost::asio::ssl::context& context,
-             const std::string& server, const std::string& path,
-             ofstream& storeFile,
-             TutorialsProgress *progress )
--            : resolver_( io_service ),
--              socket_( io_service, context ),
-+            : resolver_( io_context ),
-+              socket_( io_context, context ),
-               store_( storeFile ),
-               progress_( progress )
-     {
-@@ -143,8 +143,7 @@ class client
- 
-         // Start an asynchronous resolve to translate the server and service names
-         // into a list of endpoints.
--        tcp::resolver::query query( server, "https" );
--        resolver_.async_resolve( query,
-+        resolver_.async_resolve( server, "https",
-                                  boost::bind( &client::handle_resolve,
-                                               this,
-                                               boost::asio::placeholders::error,
-@@ -154,7 +153,7 @@ class client
-   private:
- 
-     void handle_resolve( const boost::system::error_code& err,
--                         tcp::resolver::iterator endpoint_iterator )
-+                         const tcp::resolver::results_type& endpoints )
-     {
-       if ( !err )
-       {
-@@ -162,7 +161,7 @@ class client
-         socket_.set_verify_callback( boost::bind( &client::verify_certificate, this, _1, _2 ) );
- 
-         boost::asio::async_connect( socket_.lowest_layer(), 
--                                    endpoint_iterator,
-+                                    endpoints,
-                                     boost::bind( &client::handle_connect, 
-                                                  this,
-                                                  boost::asio::placeholders::error ) );
-@@ -536,9 +535,9 @@ bool TutorialsDownload::downloadTutorialsList() const
-     boost::asio::ssl::context ctx( boost::asio::ssl::context::sslv23 );
-     ctx.set_default_verify_paths();
- 
--    boost::asio::io_service io_service;
--    client c( io_service, ctx, server, path, storeFile, nullptr );
--    io_service.run();
-+    boost::asio::io_context io_context;
-+    client c( io_context, ctx, server, path, storeFile, nullptr );
-+    io_context.run();
- 
-     doneDownload = true;
-   }
-@@ -580,9 +579,9 @@ bool TutorialsDownload::download( const TutorialData& whichTutorial, string& tut
-     boost::asio::ssl::context ctx( boost::asio::ssl::context::sslv23 );
-     ctx.set_default_verify_paths();
- 
--    boost::asio::io_service io_service;
--    client c( io_service, ctx, std::string( server.mb_str() ), std::string( path.mb_str() ), storeFile, &progress );
--    io_service.run();
-+    boost::asio::io_context io_context;
-+    client c( io_context, ctx, std::string( server.mb_str() ), std::string( path.mb_str() ), storeFile, &progress );
-+    io_context.run();
-   }
-   catch ( ParaverKernelException& e )
-   {
--- 
-2.49.0
-

pkgs/paraver/fix-libxml2-deprecation.patch

@@ -1,23 +0,0 @@
-commit 60aa3ffa05f6b40db191a880e9e622d608744c1f
-Author: Aleix Boné <aleix.boneribo@bsc.es>
-Date:   Sun Jul 21 12:11:30 2025 +0200
-
-    fix libxml2 deprecated macro
-
-diff --git a/configure.ac b/configure.ac
-index 7fe1876..3ce1091 100644
---- a/configure.ac
-+++ b/configure.ac
-@@ -46,7 +46,10 @@ AC_PROG_CPP
- AC_PROG_CXXCPP
- AC_PROG_SED
- 
--AM_PATH_XML2
-+PKG_PROG_PKG_CONFIG
-+PKG_CHECK_MODULES([XML], [libxml-2.0])
-+
-+AC_SUBST(XML_CPPFLAGS, $XML_CFLAGS)
- 
- AX_BOOST_BASE(1.36)
- AX_BOOST_SERIALIZATION
-

pkgs/paraver/kernel.nix

@@ -1,32 +1,32 @@
 {
   stdenv
-, fetchFromGitHub
 , autoreconfHook
 , boost
 , libxml2
 , xml2
+, wxGTK32
 , autoconf
 , automake
 , pkg-config
 , zlib
 }:
 
+let
+  wx = wxGTK32;
+in
 stdenv.mkDerivation rec {
   pname = "paraver-kernel";
-  version = "4.12.0";
+  version = "${src.shortRev}";
 
-  src = fetchFromGitHub {
+  src = builtins.fetchGit {
-    owner = "bsc-performance-tools";
+    url = "https://github.com/bsc-performance-tools/paraver-kernel.git";
-    repo = "paraver-kernel";
+    rev = "2e167da3cee78ca11e31b74faefb23f12bac2b8c"; # master (missing tag)
-    rev = "v${version}";
+    ref = "master";
-    sha256 = "sha256-Xs7g8ITZhPt00v7o2WlTddbou8C8Rc9kBMFpl2WsCS4=";
   };
 
   patches = [
     # https://github.com/bsc-performance-tools/paraver-kernel/pull/11
-    # TODO: add this back if it's still relevant
+    ./dont-expand-colors.patch
-    # ./dont-expand-colors.patch
-    ./fix-libxml2-deprecation.patch
   ];
 
   hardeningDisable = [ "all" ];
@@ -44,17 +44,14 @@ stdenv.mkDerivation rec {
     "--enable-openmp"
   ];
 
-  nativeBuildInputs = [
-    autoreconfHook
-    autoconf
-    automake
-    pkg-config
-  ];
-
   buildInputs = [
+    autoreconfHook
     boost
     libxml2.dev
     xml2
+    autoconf
+    automake
+    pkg-config
     zlib
   ];
 }

pkgs/paraver/release.nix

@@ -61,16 +61,13 @@ stdenv.mkDerivation rec {
     "--with-wx-config=${wx}/bin/wx-config"
   ];
 
-  nativeBuildInputs = [
-    autoconf
-    automake
-  ];
-
   buildInputs = [
     boost
     xml2
     libxml2.dev
     wx
+    autoconf
+    automake
     openssl.dev
   ];
 

pkgs/sonar/default.nix

@@ -18,12 +18,8 @@ stdenv.mkDerivation rec {
   hardeningDisable = [ "all" ];
   dontStrip = true;
   configureFlags = [ "--with-ovni=${ovni}" ];
-
-  nativeBuildInputs = [
-    autoreconfHook
-  ];
-
   buildInputs = [
+    autoreconfHook
     ovni
     mpi
   ];

pkgs/tampi/default.nix

@@ -8,6 +8,7 @@
 , gnumake
 , boost
 , mpi
+, gcc
 , autoreconfHook
 , enableOvni ? true
 , ovni ? null
@@ -40,23 +41,20 @@ let
     };
   };
   source = if (useGit) then git else release;
-in stdenv.mkDerivation {
+in stdenv.mkDerivation rec {
   pname = "tampi";
   inherit (source) src version;
   enableParallelBuilding = true;
   separateDebugInfo = true;
-
-  nativeBuildInputs = [
-    autoconf
-    automake
-    autoreconfHook
-    gnumake
-    libtool
-  ];
-
   buildInputs = [
+    autoreconfHook
+    automake
+    autoconf
+    libtool
+    gnumake
     boost
     mpi
+    gcc
   ] ++ optional (enableOvni) ovni;
   configureFlags = optional (enableOvni) "--with-ovni=${ovni}";
   dontDisableStatic = true;