diff --git a/garlic/fig/hpcg/oss.R b/garlic/fig/hpcg/oss.R new file mode 100644 index 0000000..73d1659 --- /dev/null +++ b/garlic/fig/hpcg/oss.R @@ -0,0 +1,102 @@ +library(ggplot2) +library(dplyr) +library(scales) +library(jsonlite) + +args=commandArgs(trailingOnly=TRUE) + +# Read the timetable from args[1] +input_file = "input.json" +if (length(args)>0) { input_file = args[1] } + +# Load the dataset in NDJSON format +dataset = jsonlite::stream_in(file(input_file)) %>% + jsonlite::flatten() + +particles = unique(dataset$config.particles) + +# We only need the nblocks and time +df = select(dataset, config.nblocks, config.hw.cpusPerSocket, time) %>% + rename(nblocks=config.nblocks, + cpusPerSocket=config.hw.cpusPerSocket) + +df = df %>% mutate(blocksPerCpu = nblocks / cpusPerSocket) +df$nblocks = as.factor(df$nblocks) +df$blocksPerCpuFactor = as.factor(df$blocksPerCpu) + +# Normalize the time by the median +D=group_by(df, nblocks) %>% + mutate(tnorm = time / median(time) - 1) + +bs_unique = unique(df$nblocks) +nbs=length(bs_unique) + +print(D) + +ppi=300 +h=5 +w=5 + +png("box.png", width=w*ppi, height=h*ppi, res=ppi) +# +# +# +# Create the plot with the normalized time vs nblocks +p = ggplot(data=D, aes(x=blocksPerCpuFactor, y=tnorm)) + + + # Labels + labs(x="Num blocks", y="Normalized time", + title="HPCG normalized time", + subtitle=input_file) + + + # Center the title + #theme(plot.title = element_text(hjust = 0.5)) + + + # Black and white mode (useful for printing) + #theme_bw() + + + # Add the maximum allowed error lines + geom_hline(yintercept=c(-0.01, 0.01), + linetype="dashed", color="red") + + + # Draw boxplots + geom_boxplot() + + + #scale_y_continuous(breaks = scales::pretty_breaks(n = 10)) + + + theme_bw() + + + theme(plot.subtitle=element_text(size=8)) + + + theme(legend.position = c(0.85, 0.85)) #+ + + + + +# Render the plot +print(p) + +## Save the png image +dev.off() +# +png("scatter.png", width=w*ppi, height=h*ppi, res=ppi) +# +## Create the plot with the normalized time vs nblocks +p = ggplot(D, aes(x=blocksPerCpuFactor, y=time)) + + + labs(x="Blocks/CPU", y="Time (s)", + title="HPCG granularity", + subtitle=input_file) + + theme_bw() + + theme(plot.subtitle=element_text(size=8)) + + theme(legend.position = c(0.5, 0.88)) + + + geom_point(shape=21, size=3) + + #scale_x_continuous(trans=log2_trans()) + + scale_y_continuous(trans=log2_trans()) + +# Render the plot +print(p) + +# Save the png image +dev.off() diff --git a/overlay.nix b/overlay.nix index cee78b2..03a2fa7 100644 --- a/overlay.nix +++ b/overlay.nix @@ -384,6 +384,12 @@ let }; }; + hpcg = { + oss = with ds.hpcg; pp.rPlot { + script = ./garlic/fig/hpcg/oss.R; + dataset = oss; + }; + }; heat = { test = with ds.heat; pp.rPlot {