New design with overlays
This commit is contained in:
parent
847b5b3e0a
commit
dba1cc22bc
@ -1,27 +1,26 @@
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{
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pkgs
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, bsc
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, callPackage
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, callPackages
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}:
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let
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callPackage = pkgs.lib.callPackageWith (pkgs // bsc // garlic);
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callPackages = pkgs.lib.callPackagesWith (pkgs // bsc // garlic);
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garlic = rec {
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garlic = {
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# Load some helper functions to generate app variants
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inherit (import ./gen.nix) genApps genApp genConfigs;
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inherit bsc;
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mpptest = callPackage ./mpptest { };
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ppong = callPackage ./ppong {
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mpi = bsc.mpi;
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mpi = pkgs.mpi;
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};
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nbody = callPackage ./nbody {
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cc = bsc.icc;
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mpi = bsc.impi;
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cc = pkgs.icc;
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mpi = pkgs.impi;
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tampi = pkgs.tampi;
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gitBranch = "garlic/seq";
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};
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@ -38,15 +37,17 @@ let
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};
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# Perf is tied to a linux kernel specific version
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linuxPackages = bsc.linuxPackages_4_4;
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linuxPackages = pkgs.linuxPackages_4_4;
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perfWrapper = callPackage ./perf.nix {
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perf = linuxPackages.perf;
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perf = pkgs.linuxPackages.perf;
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};
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exp = {
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noise = callPackage ./exp/noise.nix { };
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nbody = {
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bs = callPackage ./exp/nbody/bs.nix { };
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bs = callPackage ./exp/nbody/bs.nix {
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pkgs = pkgs // garlic;
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};
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mpi = callPackage ./exp/nbody/mpi.nix { };
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};
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osu = rec {
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@ -1,7 +1,7 @@
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{
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bsc
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, stdenv
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, nbody
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stdenv
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, nixpkgs
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, pkgs
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, genApp
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, genConfigs
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, runWrappers
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@ -12,7 +12,7 @@ with stdenv.lib;
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let
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# Set variable configuration for the experiment
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varConfig = {
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cc = [ bsc.icc ];
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cc = [ pkgs.bsc.icc ];
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blocksize = [ 1024 ];
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};
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@ -20,7 +20,7 @@ let
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common = {
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# Compile time nbody config
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gitBranch = "garlic/mpi+send";
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mpi = bsc.impi;
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mpi = pkgs.bsc.impi;
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# nbody runtime options
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particles = 1024*128;
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@ -97,10 +97,31 @@ let
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-p ${toString conf.particles} )'';
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};
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nbodyFn = {stage, conf, ...}: with conf; nbody.override {
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inherit cc blocksize mpi gitBranch;
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bscOverlay = import ../../../../overlay.nix;
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genPkgs = newOverlay: nixpkgs {
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overlays = [
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bscOverlay
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newOverlay
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];
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};
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# We may be able to use overlays by invoking the fix function directly, but we
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# have to get the definition of the bsc packages and the garlic ones as
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# overlays.
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nbodyFn = {stage, conf, ...}: with conf;
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let
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# We set the mpi implementation to the one specified in the conf, so all
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# packages in bsc will use that one.
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customPkgs = genPkgs (self: super: {
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bsc = super.bsc // { mpi = conf.mpi; };
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});
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in
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customPkgs.bsc.garlic.nbody.override {
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inherit cc blocksize mpi gitBranch;
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};
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stages = with common; []
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# Use sbatch to request resources first
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++ optional enableSbatch sbatch
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@ -1,6 +1,7 @@
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{
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stdenv
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, cc
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, tampi ? null
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, mpi ? null
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, cflags ? null
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, gitBranch
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@ -37,6 +38,7 @@ stdenv.mkDerivation rec {
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dontPatchShebangs = true;
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installPhase = ''
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echo ${tampi}
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mkdir -p $out/bin
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cp nbody* $out/bin/${name}
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'';
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@ -2,27 +2,27 @@
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stdenv
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, gcc
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, nanos6
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, icc-unwrapped
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, iccUnwrapped
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, wrapCCWith
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, intel-license
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, intelLicense
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}:
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let
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targetConfig = stdenv.targetPlatform.config;
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inherit gcc;
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in wrapCCWith rec {
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cc = icc-unwrapped;
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cc = iccUnwrapped;
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extraBuildCommands = ''
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echo "-B${gcc.cc}/lib/gcc/${targetConfig}/${gcc.version}" >> $out/nix-support/cc-cflags
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echo "-isystem ${icc-unwrapped}/include" >> $out/nix-support/cc-cflags
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echo "-isystem ${icc-unwrapped}/include/intel64" >> $out/nix-support/cc-cflags
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echo "-isystem ${iccUnwrapped}/include" >> $out/nix-support/cc-cflags
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echo "-isystem ${iccUnwrapped}/include/intel64" >> $out/nix-support/cc-cflags
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echo "-L${gcc.cc}/lib/gcc/${targetConfig}/${gcc.version}" >> $out/nix-support/cc-ldflags
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echo "-L${gcc.cc.lib}/lib" >> $out/nix-support/cc-ldflags
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cat "${icc-unwrapped}/nix-support/propagated-build-inputs" >> \
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cat "${iccUnwrapped}/nix-support/propagated-build-inputs" >> \
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$out/nix-support/propagated-build-inputs
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echo "export INTEL_LICENSE_FILE=${intel-license}" \
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echo "export INTEL_LICENSE_FILE=${intelLicense}" \
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>> $out/nix-support/setup-hook
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# Create the wrappers for icc and icpc
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230
default.nix
230
default.nix
@ -1,229 +1,7 @@
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{ pkgs ? import <nixpkgs> {} }:
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let
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inherit (pkgs.lib) callPackageWith;
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inherit (pkgs.lib) callPackagesWith;
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callPackage = callPackageWith (pkgs // self.bsc);
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callPackageStatic = callPackageWith (pkgs.pkgsStatic);
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callPackages = callPackagesWith (pkgs // self.bsc);
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self.bsc = rec {
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nixpkgs = pkgs;
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# Load the default implementation
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#mpi = mpich;
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#mpi = openmpi;
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mpi = intel-mpi;
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# Load the default compiler
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#stdenv = pkgs.gcc10Stdenv;
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stdenv = pkgs.gcc9Stdenv;
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#stdenv = pkgs.gcc7Stdenv;
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#stdenv = pkgs.llvmPackages_10.stdenv;
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#stdenv = pkgs.llvmPackages_9.stdenv;
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#stdenv = pkgs.llvmPackages_8.stdenv;
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#stdenv = pkgs.llvmPackages_7.stdenv;
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binutils = pkgs.binutils;
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coreutils = pkgs.coreutils;
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gcc = stdenv.cc;
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nanos6 = nanos6-git;
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# --------------------------------------------------------- #
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# BSC Packages
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# --------------------------------------------------------- #
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perf = callPackage ./bsc/perf/default.nix {
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kernel = pkgs.linuxPackages_4_9.kernel;
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systemtap = pkgs.linuxPackages_4_9.systemtap;
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};
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# ParaStation MPI
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pscom = callPackage ./bsc/parastation/pscom.nix { };
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psmpi = callPackage ./bsc/parastation/psmpi.nix { };
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osumb = callPackage ./bsc/osu/default.nix { };
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mpich = callPackage ./bsc/mpich/default.nix { };
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mpichDbg = callPackage ./bsc/mpich/default.nix { enableDebug = true; };
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# Default Intel MPI version is 2019 (the last one)
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impi = intel-mpi;
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intel-mpi = intel-mpi-2019;
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intel-mpi-2019 = callPackage ./bsc/intel-mpi/default.nix {
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# Intel MPI provides a debug version of the MPI library, but
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# by default we use the release variant for performance
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enableDebug = false;
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};
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# By default we use Intel compiler 2020 update 1
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icc-unwrapped = icc2020-unwrapped;
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icc2020-unwrapped = callPackage ./bsc/intel-compiler/icc2020.nix {
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intel-mpi = intel-mpi-2019;
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};
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# A wrapper script that puts all the flags and environment vars properly and
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# calls the intel compiler binary
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icc = callPackage bsc/intel-compiler/default.nix {
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inherit icc-unwrapped intel-license;
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};
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intel-license = callPackage bsc/intel-compiler/license.nix {
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};
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pmix2 = callPackage ./bsc/pmix/pmix2.nix { };
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slurm17 = callPackage ./bsc/slurm/default.nix {
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pmix = pmix2;
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};
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slurm17-libpmi2 = callPackage ./bsc/slurm/pmi2.nix {
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pmix = pmix2;
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};
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openmpi-mn4 = callPackage ./bsc/openmpi/default.nix {
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pmix = pmix2;
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pmi2 = slurm17-libpmi2;
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enableCxx = true;
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};
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openmpi = openmpi-mn4;
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fftw = callPackage ./bsc/fftw/default.nix {
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mpi = mpi;
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};
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extrae = callPackage ./bsc/extrae/default.nix {
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mpi = mpi;
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};
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tampi = callPackage ./bsc/tampi/default.nix {
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mpi = mpi;
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};
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mcxx = callPackage ./bsc/mcxx/default.nix {
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};
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mcxx-rarias = callPackage ./bsc/mcxx/rarias.nix {
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};
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nanos6-latest = callPackage ./bsc/nanos6/default.nix {
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extrae = extrae;
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};
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nanos6-git = callPackage ./bsc/nanos6/git.nix {
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extrae = extrae;
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};
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vtk = callPackage ./bsc/vtk/default.nix {
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mpi = mpi;
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inherit (pkgs.xorg) libX11 xorgproto libXt;
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};
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dummy = callPackage ./bsc/dummy/default.nix {
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};
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clang-ompss2-unwrapped = callPackage ./bsc/llvm-ompss2/clang.nix {
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stdenv = pkgs.llvmPackages_10.stdenv;
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enableDebug = false;
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};
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clang-ompss2 = callPackage bsc/llvm-ompss2/default.nix {
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inherit clang-ompss2-unwrapped;
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};
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stdenv-nanos6 = pkgs.clangStdenv.override {
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cc = clang-ompss2;
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};
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cpic = callPackage ./bsc/apps/cpic/default.nix {
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stdenv = stdenv-nanos6;
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inherit mpi tampi;
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};
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mpptest = callPackage ./bsc/mpptest/default.nix {
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};
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# Apps for Garlic
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nbody = callPackage ./bsc/apps/nbody/default.nix {
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stdenv = pkgs.gcc9Stdenv;
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mpi = intel-mpi;
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tampi = tampi;
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};
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heat = callPackage ./bsc/apps/heat/default.nix {
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stdenv = pkgs.gcc7Stdenv;
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mpi = intel-mpi;
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tampi = tampi;
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};
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saiph = callPackage ./bsc/apps/saiph/default.nix {
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stdenv = stdenv-nanos6;
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mpi = intel-mpi;
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tampi = tampi;
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inherit vtk;
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boost = pkgs.boost;
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};
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creams = callPackage ./bsc/apps/creams/default.nix {
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stdenv = pkgs.gcc9Stdenv;
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mpi = intel-mpi;
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tampi = tampi.override {
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mpi = intel-mpi;
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};
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};
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lulesh = callPackage ./bsc/apps/lulesh/default.nix {
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mpi = intel-mpi;
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};
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hpcg = callPackage ./bsc/apps/hpcg/default.nix {
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};
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hpccg = callPackage ./bsc/apps/hpccg/default.nix {
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};
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fwi = callPackage ./bsc/apps/fwi/default.nix {
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};
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garlic = callPackage ./bsc/garlic/default.nix {
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pkgs = pkgs;
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bsc = self.bsc;
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};
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# Patched nix for deep cluster
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inherit (callPackage ./bsc/nix/default.nix {
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storeDir = "/nix/store";
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stateDir = "/nix/var";
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boehmgc = pkgs.boehmgc.override { enableLargeConfig = true; };
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})
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nix
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nixUnstable
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nixFlakes;
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clsync = callPackage ./bsc/clsync/default.nix { };
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nixStatic = (callPackageStatic ./bsc/nix/static.nix {
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callPackage = callPackageWith (pkgs.pkgsStatic);
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storeDir = "/nix/store";
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stateDir = "/nix/var";
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sandbox-shell = "/bin/sh";
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boehmgc = pkgs.pkgsStatic.boehmgc.override { enableLargeConfig = true; };
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}).nix;
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test = {
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chroot = callPackage ./test/chroot.nix { };
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internet = callPackage ./test/security/internet.nix { };
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clang-ompss2 = callPackage ./test/compilers/clang-ompss2.nix {
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stdenv = stdenv-nanos6;
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inherit clang-ompss2;
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};
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};
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bscOverlay = import ./overlay.nix;
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pkgs = import <nixpkgs> {
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overlays = [ bscOverlay ];
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};
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in pkgs // self
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in pkgs
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196
overlay.nix
Normal file
196
overlay.nix
Normal file
@ -0,0 +1,196 @@
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self: /* Future last stage */
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super: /* Previous stage */
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let
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#callPackage = self.callPackage;
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inherit (self.lib) callPackageWith;
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inherit (self.lib) callPackagesWith;
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callPackage = callPackageWith (self // self.bsc);
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bsc = {
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# Default MPI implementation to use. Will be overwritten by the
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# experiments.
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mpi = self.bsc.openmpi;
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# --------------------------------------------------------- #
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# BSC Packages
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# --------------------------------------------------------- #
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perf = callPackage ./bsc/perf/default.nix {
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kernel = self.linuxPackages_4_9.kernel;
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systemtap = self.linuxPackages_4_9.systemtap;
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};
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# ParaStation MPI
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pscom = callPackage ./bsc/parastation/pscom.nix { };
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psmpi = callPackage ./bsc/parastation/psmpi.nix { };
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osumb = callPackage ./bsc/osu/default.nix { };
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mpich = callPackage ./bsc/mpich/default.nix { };
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mpichDebug = self.mpich.override { enableDebug = true; };
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# Default Intel MPI version is 2019 (the last one)
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impi = self.bsc.intelMpi;
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intelMpi = self.bsc.intelMpi2019;
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intelMpi2019 = callPackage ./bsc/intel-mpi/default.nix {
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# Intel MPI provides a debug version of the MPI library, but
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# by default we use the release variant for performance
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enableDebug = false;
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};
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# By default we use Intel compiler 2020 update 1
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iccUnwrapped = self.bsc.icc2020Unwrapped;
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icc2020Unwrapped = callPackage ./bsc/intel-compiler/icc2020.nix {
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intel-mpi = self.bsc.intelMpi;
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};
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# A wrapper script that puts all the flags and environment vars properly and
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# calls the intel compiler binary
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icc = callPackage ./bsc/intel-compiler/default.nix {
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iccUnwrapped = self.bsc.iccUnwrapped;
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intelLicense = self.bsc.intelLicense;
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};
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intelLicense = callPackage ./bsc/intel-compiler/license.nix { };
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pmix2 = callPackage ./bsc/pmix/pmix2.nix { };
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slurm17 = callPackage ./bsc/slurm/default.nix {
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pmix = self.bsc.pmix2;
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};
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slurm17-libpmi2 = callPackage ./bsc/slurm/pmi2.nix {
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pmix = self.bsc.pmix2;
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};
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openmpi-mn4 = callPackage ./bsc/openmpi/default.nix {
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pmix = self.bsc.pmix2;
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pmi2 = self.bsc.slurm17-libpmi2;
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enableCxx = true;
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};
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openmpi = self.bsc.openmpi-mn4;
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fftw = callPackage ./bsc/fftw/default.nix {
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mpi = self.bsc.mpi;
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};
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extrae = callPackage ./bsc/extrae/default.nix {
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mpi = self.bsc.mpi;
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};
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tampi = callPackage ./bsc/tampi/default.nix {
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mpi = self.bsc.mpi;
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};
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mcxx = callPackage ./bsc/mcxx/default.nix { };
|
||||
|
||||
mcxx-rarias = callPackage ./bsc/mcxx/rarias.nix { };
|
||||
|
||||
# Use nanos6 git by default
|
||||
nanos6 = self.nanos6-git;
|
||||
nanos6-latest = callPackage ./bsc/nanos6/default.nix {
|
||||
extrae = self.bsc.extrae;
|
||||
};
|
||||
|
||||
nanos6-git = callPackage ./bsc/nanos6/git.nix {
|
||||
extrae = self.bsc.extrae;
|
||||
};
|
||||
|
||||
vtk = callPackage ./bsc/vtk/default.nix {
|
||||
mpi = self.bsc.mpi;
|
||||
inherit (self.xorg) libX11 xorgproto libXt;
|
||||
};
|
||||
|
||||
dummy = callPackage ./bsc/dummy/default.nix { };
|
||||
|
||||
clang-ompss2-unwrapped = callPackage ./bsc/llvm-ompss2/clang.nix {
|
||||
stdenv = self.llvmPackages_10.stdenv;
|
||||
enableDebug = false;
|
||||
};
|
||||
|
||||
clang-ompss2 = callPackage bsc/llvm-ompss2/default.nix {
|
||||
clang-ompss2-unwrapped = self.bsc.clang-ompss2-unwrapped;
|
||||
};
|
||||
|
||||
stdenvOmpss2 = self.clangStdenv.override {
|
||||
cc = self.bsc.clang-ompss2;
|
||||
};
|
||||
|
||||
cpic = callPackage ./bsc/apps/cpic/default.nix {
|
||||
stdenv = self.bsc.stdenvOmpss2;
|
||||
mpi = self.bsc.mpi;
|
||||
tampi = self.bsc.tampi;
|
||||
};
|
||||
|
||||
mpptest = callPackage ./bsc/mpptest/default.nix { };
|
||||
|
||||
|
||||
garlic = {
|
||||
|
||||
# Load some helper functions to generate app variants
|
||||
inherit (import ./bsc/garlic/gen.nix) genApps genApp genConfigs;
|
||||
|
||||
mpptest = callPackage ./bsc/garlic/mpptest { };
|
||||
|
||||
ppong = callPackage ./bsc/garlic/ppong {
|
||||
mpi = self.bsc.mpi;
|
||||
};
|
||||
|
||||
nbody = callPackage ./bsc/garlic/nbody {
|
||||
cc = self.bsc.icc;
|
||||
mpi = self.bsc.impi;
|
||||
tampi = self.bsc.tampi;
|
||||
gitBranch = "garlic/seq";
|
||||
};
|
||||
|
||||
runWrappers = {
|
||||
sbatch = callPackage ./bsc/garlic/sbatch.nix { };
|
||||
srun = callPackage ./bsc/garlic/srun.nix { };
|
||||
launch = callPackage ./bsc/garlic/launcher.nix { };
|
||||
control = callPackage ./bsc/garlic/control.nix { };
|
||||
nixsetup= callPackage ./bsc/garlic/nix-setup.nix { };
|
||||
argv = callPackage ./bsc/garlic/argv.nix { };
|
||||
statspy = callPackage ./bsc/garlic/statspy.nix { };
|
||||
extrae = callPackage ./bsc/garlic/extrae.nix { };
|
||||
stagen = callPackage ./bsc/garlic/stagen.nix { };
|
||||
};
|
||||
|
||||
# Perf is tied to a linux kernel specific version
|
||||
linuxPackages = self.linuxPackages_4_4;
|
||||
perfWrapper = callPackage ./bsc/garlic/perf.nix {
|
||||
perf = self.linuxPackages.perf;
|
||||
};
|
||||
|
||||
exp = {
|
||||
noise = callPackage ./bsc/garlic/exp/noise.nix { };
|
||||
nbody = {
|
||||
bs = callPackage ./bsc/garlic/exp/nbody/bs.nix {
|
||||
pkgs = self // self.bsc.garlic;
|
||||
nixpkgs = import <nixpkgs>;
|
||||
genApp = self.bsc.garlic.genApp;
|
||||
genConfigs = self.bsc.garlic.genConfigs;
|
||||
runWrappers = self.bsc.garlic.runWrappers;
|
||||
};
|
||||
# mpi = callPackage ./bsc/garlic/exp/nbody/mpi.nix { };
|
||||
};
|
||||
osu = rec {
|
||||
latency-internode = callPackage ./bsc/garlic/exp/osu/latency.nix { };
|
||||
latency-intranode = callPackage ./bsc/garlic/exp/osu/latency.nix {
|
||||
interNode = false;
|
||||
};
|
||||
latency = latency-internode;
|
||||
};
|
||||
};
|
||||
};
|
||||
};
|
||||
|
||||
in
|
||||
{
|
||||
bsc = bsc;
|
||||
}
|
||||
Loading…
Reference in New Issue
Block a user