Success sbatch launch in MN4 with nbody seq

bsc/garlic/default.nix

@@ -65,7 +65,13 @@ let
       };
 
       nbodyBSjob = callPackage ./dispatcher.nix {
-        jobs = map (app: srunner {app=app;}) (
+        jobs = map (app: srunner {
+            app=app;
+            prefix="/gpfs/projects/bsc15/nix";
+            exclusive=false;
+            ntasks = "1";
+          }
+        ) (
           genApp nbody (
             genConfigs {
               cc = [ bsc.icc ];

bsc/garlic/dispatcher.nix

@@ -19,7 +19,7 @@ stdenv.mkDerivation {
 
     mkdir -p $out/bin
     cat > $out/bin/execute-all-jobs <<EOF
-    #!/bin/bash
+    #!/bin/sh
 
     for j in $out/jobs/*; do
       echo "sbatch \$j"

bsc/garlic/nbody/default.nix

@@ -29,12 +29,25 @@ stdenv.mkDerivation {
     "BS=${toString blocksize}"
   ];
 
+  dontPatchShebangs = true;
+
   installPhase = ''
     mkdir -p $out/bin
     cp nbody $out/bin/
 
     cat > $out/bin/run <<EOF
-    #!/bin/bash
+    #!/bin/sh
+
+    # We need to enter the nix namespace first, in order to have /nix
+    # available, so we use this hack:
+    if [ ! -e /nix ]; then
+      echo "running nix-setup \$0"
+      exec nix-setup \$0
+    fi
+
+    ls -l /nix
+    pwd
+
     exec $out/bin/nbody -p ${toString particles} -t ${toString timesteps}
     EOF
 

bsc/garlic/srunner.nix

@@ -5,6 +5,7 @@
 
 {
   app
+, prefix ? ""
 , argv ? ""
 , binary ? "/bin/run"
 , ntasks ? null
@@ -55,11 +56,9 @@ stdenv.mkDerivation rec {
     + sbatchOpt "time" time
     + sbatchOpt "qos" qos
     + optionalString (extra!=null) extra
-    +''
-    
-    ${numactl}/bin/numactl -s
-
-    srun ${app}${binary} ${argv}
+    +
+    ''
+    srun ${prefix}${app}${binary} ${argv}
     EOF
   '';
 }