Simplify saiph numcomm experiment
This commit is contained in:
parent
53dca32469
commit
9020f87765
@ -1,188 +1,61 @@
|
||||
{
|
||||
stdenv
|
||||
, nixpkgs
|
||||
, pkgs
|
||||
, genApp
|
||||
, genConfigs
|
||||
, runWrappers
|
||||
, stdexp
|
||||
, bsc
|
||||
, targetMachine
|
||||
, stages
|
||||
}:
|
||||
|
||||
with stdenv.lib;
|
||||
|
||||
let
|
||||
# Set variable configuration for the experiment
|
||||
varConfig = {
|
||||
devMode = [ true ];
|
||||
numComm = [ 1 ];
|
||||
# Configurations for each unit (using the cartesian product)
|
||||
confUnit = with bsc; {
|
||||
numComm = [ 1 2 ];
|
||||
};
|
||||
|
||||
# Common configuration
|
||||
common = {
|
||||
# Compile time nbody config
|
||||
# Configuration for the complete experiment
|
||||
confExperiment = with bsc; {
|
||||
# saiph options
|
||||
devMode = false;
|
||||
mpi = impi;
|
||||
gitBranch = "garlic/tampi+isend+oss+task+simd";
|
||||
mpi = pkgs.bsc.impi;
|
||||
|
||||
# Repeat the execution of each unit 30 times
|
||||
loops = 100;
|
||||
|
||||
# Resources
|
||||
ntasksPerNode = "2";
|
||||
nodes = "1";
|
||||
|
||||
# Stage configuration
|
||||
enableSbatch = true;
|
||||
enableControl = true;
|
||||
enableExtrae = false;
|
||||
enablePerf = false;
|
||||
|
||||
# MN4 path
|
||||
nixPrefix = "/gpfs/projects/bsc15/nix";
|
||||
ntasksPerNode = 2;
|
||||
nodes = 1;
|
||||
cpuBind = "sockets,verbose";
|
||||
};
|
||||
|
||||
# Compute the cartesian product of all configurations
|
||||
configs = map (conf: conf // common) (genConfigs varConfig);
|
||||
|
||||
stageProgram = stage:
|
||||
if stage ? programPath
|
||||
then "${stage}${stage.programPath}" else "${stage}";
|
||||
|
||||
w = runWrappers;
|
||||
|
||||
sbatch = {stage, conf, ...}: with conf; w.sbatch (
|
||||
# Allow a user to define a custom reservation for the job in MareNostrum4,
|
||||
# by setting the garlic.sbatch.reservation attribute in the
|
||||
# ~/.config/nixpkgs/config.nix file. If the attribute is not set, no
|
||||
# reservation is used. The user reservation may be overwritten by the
|
||||
# experiment, if the reservation is set like with nodes or ntasksPerNode.
|
||||
optionalAttrs (pkgs.config ? garlic.sbatch.reservation) {
|
||||
inherit (pkgs.config.garlic.sbatch) reservation;
|
||||
} // {
|
||||
program = stageProgram stage;
|
||||
exclusive = true;
|
||||
time = "02:00:00";
|
||||
qos = "debug";
|
||||
jobName = "saiph";
|
||||
inherit nixPrefix nodes ntasksPerNode;
|
||||
}
|
||||
);
|
||||
|
||||
control = {stage, conf, ...}: with conf; w.control {
|
||||
program = stageProgram stage;
|
||||
loops = 100;
|
||||
# Compute the array of configurations
|
||||
configs = stdexp.buildConfigs {
|
||||
var = confUnit;
|
||||
fixed = targetMachine.config // confExperiment;
|
||||
};
|
||||
|
||||
srun = {stage, conf, ...}: with conf; w.srun {
|
||||
program = stageProgram stage;
|
||||
srunOptions = "--cpu-bind=verbose,sockets";
|
||||
inherit nixPrefix;
|
||||
};
|
||||
|
||||
statspy = {stage, conf, ...}: with conf; w.statspy {
|
||||
program = stageProgram stage;
|
||||
};
|
||||
|
||||
perf = {stage, conf, ...}: with conf; w.perf {
|
||||
program = stageProgram stage;
|
||||
perfArgs = "sched record -a";
|
||||
};
|
||||
|
||||
nixsetup = {stage, conf, ...}: with conf; w.nixsetup {
|
||||
program = stageProgram stage;
|
||||
nixsetup = "${nixPrefix}/bin/nix-setup";
|
||||
};
|
||||
|
||||
extrae = {stage, conf, ...}:
|
||||
let
|
||||
# We set the mpi implementation to the one specified in the conf, so all
|
||||
# packages in bsc will use that one.
|
||||
customPkgs = genPkgs (self: super: {
|
||||
bsc = super.bsc // { mpi = conf.mpi; };
|
||||
});
|
||||
|
||||
extrae = customPkgs.bsc.extrae;
|
||||
in
|
||||
w.extrae {
|
||||
program = stageProgram stage;
|
||||
extrae = extrae;
|
||||
traceLib = "nanosmpi"; # mpi -> libtracempi.so
|
||||
configFile = ./extrae.xml;
|
||||
};
|
||||
|
||||
bscOverlay = import ../../../overlay.nix;
|
||||
|
||||
genPkgs = newOverlay: nixpkgs {
|
||||
overlays = [
|
||||
bscOverlay
|
||||
newOverlay
|
||||
];
|
||||
};
|
||||
|
||||
# Print the environment to ensure we don't get anything nasty
|
||||
envRecord = {stage, conf, ...}: w.envRecord {
|
||||
program = stageProgram stage;
|
||||
};
|
||||
|
||||
broom = {stage, conf, ...}: w.broom {
|
||||
program = stageProgram stage;
|
||||
};
|
||||
# We may be able to use overlays by invoking the fix function directly, but we
|
||||
# have to get the definition of the bsc packages and the garlic ones as
|
||||
# overlays.
|
||||
|
||||
argv = {stage, conf, ...}: with conf; w.argv {
|
||||
program = stageProgram stage;
|
||||
exec = {nextStage, conf, ...}: with conf; stages.exec {
|
||||
inherit nextStage;
|
||||
env = ''
|
||||
export OMP_NUM_THREADS=24
|
||||
export NANOS6_REPORT_PREFIX="#"
|
||||
export I_MPI_THREAD_SPLIT=1
|
||||
export ASAN_SYMBOLIZER_PATH=${pkgs.bsc.clangOmpss2Unwrapped}/bin/llvm-symbolizer
|
||||
''
|
||||
+ optionalString enableExtrae
|
||||
''export NANOS6=extrae
|
||||
export NANOS6_EXTRAE_AS_THREADS=0
|
||||
export ASAN_SYMBOLIZER_PATH=${bsc.clangOmpss2Unwrapped}/bin/llvm-symbolizer
|
||||
'';
|
||||
};
|
||||
|
||||
saiphFn = {stage, conf, ...}: with conf;
|
||||
program = {nextStage, conf, ...}: with conf;
|
||||
let
|
||||
# We set the mpi implementation to the one specified in the conf, so all
|
||||
# packages in bsc will use that one.
|
||||
customPkgs = genPkgs (self: super: {
|
||||
bsc = super.bsc // { mpi = conf.mpi; };
|
||||
});
|
||||
customPkgs = stdexp.replaceMpi conf.mpi;
|
||||
in
|
||||
customPkgs.bsc.garlic.saiph.override {
|
||||
customPkgs.apps.saiph.override {
|
||||
inherit devMode numComm mpi gitBranch;
|
||||
};
|
||||
|
||||
stages = with common; []
|
||||
# Cleans ALL environment variables
|
||||
++ [ broom ]
|
||||
|
||||
# Use sbatch to request resources first
|
||||
++ optionals enableSbatch [ sbatch nixsetup ]
|
||||
|
||||
# Record the current env vars set by SLURM to verify we don't have something
|
||||
# nasty (like sourcing .bashrc). Take a look at #26
|
||||
++ [ envRecord ]
|
||||
|
||||
# Repeats the next stages N=30 times
|
||||
++ optional enableControl control
|
||||
|
||||
# Executes srun to launch the program in the requested nodes, and
|
||||
# immediately after enters the nix environment again, as slurmstepd launches
|
||||
# the next stages from outside the namespace.
|
||||
++ [ srun nixsetup ]
|
||||
|
||||
# Intrumentation with extrae
|
||||
++ optional enableExtrae extrae
|
||||
|
||||
# Optionally profile the next stages with perf
|
||||
++ optional enablePerf perf
|
||||
|
||||
# Execute the saiph example app
|
||||
++ [ argv saiphFn ];
|
||||
|
||||
# List of actual programs to be executed
|
||||
jobs = map (conf: w.stagen { inherit conf stages; }) configs;
|
||||
pipeline = stdexp.stdStages ++ [ exec program ];
|
||||
|
||||
in
|
||||
# We simply run each program one after another
|
||||
w.launch jobs
|
||||
|
||||
stdexp.genExperiment { inherit configs pipeline; }
|
||||
|
||||
Loading…
Reference in New Issue
Block a user