fwi: update strong scaling figure script
This commit is contained in:
parent
99c6196734
commit
8ce2a68cd7
94
garlic/fig/fwi/ss.R
Normal file
94
garlic/fig/fwi/ss.R
Normal file
@ -0,0 +1,94 @@
|
||||
library(ggplot2)
|
||||
library(dplyr, warn.conflicts = FALSE)
|
||||
library(scales)
|
||||
library(jsonlite)
|
||||
library(viridis, warn.conflicts = FALSE)
|
||||
library(stringr)
|
||||
|
||||
args = commandArgs(trailingOnly=TRUE)
|
||||
|
||||
# Set the input dataset if given in argv[1], or use "input" as default
|
||||
if (length(args)>0) { input_file = args[1] } else { input_file = "input" }
|
||||
|
||||
df = jsonlite::stream_in(file(input_file), verbose=FALSE) %>%
|
||||
|
||||
jsonlite::flatten() %>%
|
||||
|
||||
select(unit,
|
||||
config.blocksize,
|
||||
config.gitBranch,
|
||||
config.nodes,
|
||||
time) %>%
|
||||
|
||||
rename(blocksize=config.blocksize,
|
||||
nodes=config.nodes,
|
||||
gitBranch=config.gitBranch) %>%
|
||||
|
||||
# Remove the "garlic/" prefix from the gitBranch
|
||||
mutate(branch = str_replace(gitBranch, "garlic/", "")) %>%
|
||||
|
||||
mutate(time.nodes = time * nodes) %>%
|
||||
|
||||
mutate(unit = as.factor(unit)) %>%
|
||||
mutate(gitBranch = as.factor(gitBranch)) %>%
|
||||
mutate(branch = as.factor(branch)) %>%
|
||||
mutate(blocksize = as.factor(blocksize)) %>%
|
||||
mutate(nodes = as.factor(nodes)) %>%
|
||||
|
||||
group_by(unit) %>%
|
||||
mutate(median.time = median(time)) %>%
|
||||
mutate(median.time.nodes = median(time.nodes)) %>%
|
||||
mutate(normalized.time = time / median.time - 1) %>%
|
||||
ungroup()
|
||||
|
||||
|
||||
dpi = 300
|
||||
h = 6
|
||||
w = 6
|
||||
|
||||
main_title = "FWI strong scaling"
|
||||
|
||||
# ---------------------------------------------------------------------
|
||||
|
||||
p = ggplot(df, aes(x=nodes, y=normalized.time)) +
|
||||
geom_boxplot() +
|
||||
geom_hline(yintercept=c(-0.01, 0.01), linetype="dashed", color="red") +
|
||||
theme_bw() +
|
||||
facet_wrap(branch ~ .) +
|
||||
labs(x="nodes", y="Normalized time",
|
||||
title=sprintf("%s: normalized time", main_title),
|
||||
subtitle=input_file) +
|
||||
theme(plot.subtitle=element_text(size=8))
|
||||
|
||||
ggsave("normalized.time.png", plot=p, width=w, height=h, dpi=dpi)
|
||||
ggsave("normalized.time.pdf", plot=p, width=w, height=h, dpi=dpi)
|
||||
|
||||
# ---------------------------------------------------------------------
|
||||
|
||||
p = ggplot(df, aes(x=nodes, y=time, color=gitBranch)) +
|
||||
geom_point(shape=21, size=3) +
|
||||
geom_line(aes(y=median.time, group=gitBranch)) +
|
||||
theme_bw() +
|
||||
# facet_wrap(branch ~ .) +
|
||||
labs(y="Time (s)",
|
||||
title=sprintf("%s: time", main_title),
|
||||
subtitle=input_file) +
|
||||
theme(plot.subtitle=element_text(size=8))
|
||||
|
||||
ggsave("time.png", plot=p, width=w, height=h, dpi=dpi)
|
||||
ggsave("time.pdf", plot=p, width=w, height=h, dpi=dpi)
|
||||
|
||||
# ---------------------------------------------------------------------
|
||||
|
||||
p = ggplot(df, aes(x=nodes, y=time.nodes, color=branch)) +
|
||||
geom_point(shape=21, size=3) +
|
||||
geom_line(aes(y=median.time.nodes, group=branch)) +
|
||||
theme_bw() +
|
||||
#facet_wrap(branch ~ .) +
|
||||
labs(x="nodes", y="Time * nodes (s)",
|
||||
title=sprintf("%s: time * nodes", main_title),
|
||||
subtitle=input_file) +
|
||||
theme(plot.subtitle=element_text(size=8))
|
||||
|
||||
ggsave("time.nodes.png", plot=p, width=w, height=h, dpi=dpi)
|
||||
ggsave("time.nodes.pdf", plot=p, width=w, height=h, dpi=dpi)
|
||||
@ -1,120 +0,0 @@
|
||||
library(ggplot2)
|
||||
library(dplyr)
|
||||
library(scales)
|
||||
library(jsonlite)
|
||||
|
||||
args=commandArgs(trailingOnly=TRUE)
|
||||
|
||||
# Read the timetable from args[1]
|
||||
input_file = "input.json"
|
||||
if (length(args)>0) { input_file = args[1] }
|
||||
|
||||
# Load the dataset in NDJSON format
|
||||
dataset = jsonlite::stream_in(file(input_file)) %>%
|
||||
jsonlite::flatten()
|
||||
|
||||
# Select block size to display
|
||||
useBlocksize = 2
|
||||
|
||||
# We only need the nblocks and time
|
||||
df = select(dataset, config.blocksize, config.gitBranch, config.nodes, time) %>%
|
||||
rename(
|
||||
blocksize=config.blocksize,
|
||||
gitBranch=config.gitBranch,
|
||||
nodes=config.nodes
|
||||
) %>%
|
||||
filter(blocksize == useBlocksize | blocksize == 0) %>%
|
||||
group_by(nodes, gitBranch) %>%
|
||||
mutate(mtime = median(time)) %>%
|
||||
mutate(nxmtime = mtime * nodes) %>%
|
||||
mutate(nxtime = time * nodes) %>%
|
||||
ungroup()
|
||||
|
||||
df$gitBranch = as.factor(df$gitBranch)
|
||||
df$blocksize = as.factor(df$blocksize)
|
||||
df$nodes = as.factor(df$nodes)
|
||||
|
||||
ppi=300
|
||||
h=5
|
||||
w=5
|
||||
|
||||
####################################################################
|
||||
### Line plot (time)
|
||||
####################################################################
|
||||
png("time.png", width=w*ppi, height=h*ppi, res=ppi)
|
||||
|
||||
p = ggplot(df, aes(x=nodes, y=time, group=gitBranch, color=gitBranch)) +
|
||||
geom_point() +
|
||||
geom_line() +
|
||||
theme_bw() +
|
||||
labs(x="Nodes", y="Time (s)", title="FWI strong scaling",
|
||||
subtitle=input_file) +
|
||||
theme(plot.subtitle=element_text(size=8)) +
|
||||
theme(legend.position = c(0.6, 0.75))
|
||||
|
||||
# Render the plot
|
||||
print(p)
|
||||
|
||||
# Save the png image
|
||||
dev.off()
|
||||
|
||||
####################################################################
|
||||
### Line plot (time x nodes)
|
||||
####################################################################
|
||||
png("nxtime.png", width=w*ppi, height=h*ppi, res=ppi)
|
||||
|
||||
p = ggplot(df, aes(x=nodes, y=nxtime, group=gitBranch, color=gitBranch)) +
|
||||
geom_point() +
|
||||
geom_line() +
|
||||
theme_bw() +
|
||||
labs(x="Nodes", y="Time * Nodes (s)", title="FWI strong scaling",
|
||||
subtitle=input_file) +
|
||||
theme(plot.subtitle=element_text(size=8)) +
|
||||
theme(legend.position = c(0.15, 0.80)) +
|
||||
theme(legend.text = element_text(size = 7))
|
||||
|
||||
# Render the plot
|
||||
print(p)
|
||||
|
||||
# Save the png image
|
||||
dev.off()
|
||||
|
||||
####################################################################
|
||||
### Line plot (median time)
|
||||
####################################################################
|
||||
png("mediantime.png", width=w*ppi, height=h*ppi, res=ppi)
|
||||
|
||||
p = ggplot(df, aes(x=nodes, y=mtime, group=gitBranch, color=gitBranch)) +
|
||||
geom_point() +
|
||||
geom_line() +
|
||||
theme_bw() +
|
||||
labs(x="Nodes", y="Median Time (s)", title="FWI strong scaling",
|
||||
subtitle=input_file) +
|
||||
theme(plot.subtitle=element_text(size=8)) +
|
||||
theme(legend.position = c(0.5, 0.88))
|
||||
|
||||
# Render the plot
|
||||
print(p)
|
||||
|
||||
# Save the png image
|
||||
dev.off()
|
||||
|
||||
####################################################################
|
||||
### Line plot (nodes x median time)
|
||||
####################################################################
|
||||
png("nxmtime.png", width=w*ppi, height=h*ppi, res=ppi)
|
||||
|
||||
p = ggplot(df, aes(x=nodes, y=nxmtime, group=gitBranch, color=gitBranch)) +
|
||||
geom_point() +
|
||||
geom_line() +
|
||||
theme_bw() +
|
||||
labs(x="Nodes", y="Median Time * Nodes (s)", title="FWI strong scaling",
|
||||
subtitle=input_file) +
|
||||
theme(plot.subtitle=element_text(size=8)) +
|
||||
theme(legend.position = c(0.5, 0.88))
|
||||
|
||||
# Render the plot
|
||||
print(p)
|
||||
|
||||
# Save the png image
|
||||
dev.off()
|
||||
Loading…
Reference in New Issue
Block a user