Simplify experiment
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<?xml version='1.0'?>
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<!-- Here comes the Extrae configuration.
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As a general rule, "enabled" means that the feature is enabled :) If
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it's not enabled, then the value can be set to some default.
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-->
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<!-- Must we activate the tracing? Which is the tracing mode? (detail/bursts) Where is it located? Which kind of trace? Version of the XML parser?-->
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<trace enabled="yes"
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initial-mode="detail"
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type="paraver"
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>
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<!-- Configuration of some MPI dependant values -->
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<mpi enabled="yes">
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<!-- Gather counters in the MPI routines? -->
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<counters enabled="yes" />
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</mpi>
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<!-- Emit information of the callstack -->
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<callers enabled="yes">
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<!-- At MPI calls, select depth level -->
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<mpi enabled="yes">1-3</mpi>
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<!-- At sampling points, select depth level -->
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<sampling enabled="yes">1-5</sampling>
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<!-- At dynamic memory system calls -->
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<dynamic-memory enabled="no">1-3</dynamic-memory>
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<!-- At I/O system calls -->
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<input-output enabled="no">1-3</input-output>
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<!-- At other system calls -->
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<syscall enabled="no">1-3</syscall>
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</callers>
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<!-- Configuration of some OpenMP dependant values -->
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<openmp enabled="no" ompt="no">
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<!-- If the library instruments OpenMP, shall we gather info about locks?
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Obtaining such information can make the final trace quite large.
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-->
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<locks enabled="no" />
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<!-- Gather info about taskloops? -->
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<taskloop enabled="no" />
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<!-- Gather counters in the OpenMP routines? -->
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<counters enabled="yes" />
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</openmp>
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<!-- Configuration of some pthread dependant values -->
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<pthread enabled="no">
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<!-- If the library instruments pthread, shall we gather info about locks,
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mutexs and conds?
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Obtaining such information can make the final trace quite large.
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-->
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<locks enabled="no" />
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<!-- Gather counters in the pthread routines? -->
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<counters enabled="yes" />
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</pthread>
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<!-- Configuration of User Functions -->
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<user-functions enabled="no" list="/home/bsc41/bsc41273/user-functions.dat" exclude-automatic-functions="no">
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<!-- Gather counters on the UF routines? -->
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<counters enabled="yes" />
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</user-functions>
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<!-- Configure which software/hardware counters must be collected -->
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<counters enabled="yes">
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<!-- Configure the CPU hardware counters. You can define here as many sets
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as you want. You can also define if MPI/OpenMP calls must report such
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counters.
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Starting-set property defines which set is chosen from every task.
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Possible values are:
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- cyclic : The sets are distributed in a cyclic fashion among all
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tasks. So Task 0 takes set 1, Task 1 takes set 2,...
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- block : The sets are distributed in block fashion among all tasks.
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Task [0..i-1] takes set 1, Task [i..2*i-1] takes set 2, ...
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- Number : All the tasks will start with the given set
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(from 1..N).
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-->
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<cpu enabled="yes" starting-set-distribution="1">
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<!-- In this example, we configure two sets of counters. The first will
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be changed into the second after 5 calls to some collective
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operation on MPI_COMM_WORLD. Once the second is activated, it will
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turn to the first after 5seconds (aprox. depending on the MPI calls
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granularity)
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If you want that any set be counting forever, just don't set
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changeat-globalops, or, changeat-time.
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Each set has it's own properties.
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domain -> in which domain must PAPI obtain the information (see
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PAPI info)
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changeat-globalops=num -> choose the next set after num
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MPI_COMM_WORLD operations
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changeat-time=numTime -> choose the next set after num Time
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(for example 5s, 15m (for ms), 10M (for minutes),..)
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-->
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<set enabled="yes" domain="all">
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PAPI_TOT_INS,PAPI_TOT_CYC
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</set>
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</cpu>
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<!-- Do we want to gather information of the network counters?
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Nowadays we can gather information about MX/GM cards.
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-->
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<network enabled="no" />
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<!-- Obtain resource usage information -->
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<resource-usage enabled="no" />
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<!-- Obtain malloc statistics -->
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<memory-usage enabled="no" />
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</counters>
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<!-- Define the characteristics of the tracing storage. If not defined,
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or set, the tracing will send the traces to the current directory
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with a default output name.
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-->
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<storage enabled="no">
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<!-- The intermediate files will take the name of the application -->
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<trace-prefix enabled="yes">TRACE</trace-prefix>
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<!-- Stop the tracing when the intermediate file reaches this amount of MBs -->
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<size enabled="no">5</size>
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<!-- Where must we store the MPIT files while the app runs? -->
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<temporal-directory enabled="yes">/scratch</temporal-directory>
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<!-- Where must we store the MPIT files once the app ends? -->
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<final-directory enabled="yes">/gpfs/scratch/bsc41/bsc41273</final-directory>
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</storage>
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<!-- Buffer configuration -->
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<buffer enabled="yes">
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<!-- How many events can we handle before any flush -->
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<size enabled="yes">5000000</size>
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<!-- Use the event buffer in a circular manner? You can use this option to
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trace the last set of events. Needs MPI global routines operating on
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MPI_COMM_WORLD communicator to be merged
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-->
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<circular enabled="no" />
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</buffer>
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<!-- Control tracing -->
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<trace-control enabled="no">
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<!-- We can start the application with a "latent tracing" and wake it up
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once a control file is created. Use the property 'frequency' to
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choose at which frequency this check must be done. If not supplied,
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it will be checked every 100 global operations on MPI_COMM_WORLD.
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-->
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<file enabled="no" frequency="5M">/gpfs/scratch/bsc41/bsc41273/control</file>
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<!--
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-->
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<global-ops enabled="no"></global-ops>
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</trace-control>
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<others enabled="yes">
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<!-- Want to force a minimum amount of time of tracing? Here we force 10
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minutes -->
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<minimum-time enabled="no">10M</minimum-time>
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<!-- Capture the following signals to finish cleanly -->
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<finalize-on-signal enabled="yes"
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SIGUSR1="no" SIGUSR2="no" SIGINT="yes"
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SIGQUIT="yes" SIGTERM="yes" SIGXCPU="yes"
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SIGFPE="yes" SIGSEGV="yes" SIGABRT="yes"
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/>
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<!-- Use instrumentation poitns to flush sampling buffer -->
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<flush-sampling-buffer-at-instrumentation-point enabled="yes" />
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</others>
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<!-- Bursts library enabled? This requires an special library! -->
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<bursts enabled="no">
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<!-- Specify the threshold. This is mandatory! In this example, the
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threshold is limitted to 500 microseconds
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-->
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<threshold enabled="yes">500u</threshold>
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<!-- Report MPI statistics? -->
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<mpi-statistics enabled="yes" />
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</bursts>
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<!-- Enable sampling capabilities using system clock.
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Type may refer to: default, real, prof and virtual.
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Period stands for the sampling period (50ms here)
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plus a variability of 10ms, which means periods from
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45 to 55ms.
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-->
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<sampling enabled="no" type="default" period="50m" variability="10m" />
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<!-- Enable dynamic memory instrumentation (experimental) -->
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<dynamic-memory enabled="no" />
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<!-- Enable I/O (read, write) instrumentation (experimental) -->
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<input-output enabled="no" internals="no"/>
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<!-- Enable system calls instrumentation (experimental) -->
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<syscall enabled="no" />
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<!-- Do merge the intermediate tracefiles into the final tracefile?
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Named according to the binary name
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options:
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synchronization = { default, task, node, no } (default is node)
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max-memory = Number (in Mbytes) max memory used in merge step
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joint-states = { yes, no } generate joint states?
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keep-mpits = { yes, no } keep mpit files after merge?
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-->
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<merge enabled="yes"
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synchronization="default"
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tree-fan-out="16"
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max-memory="512"
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joint-states="yes"
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keep-mpits="yes"
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sort-addresses="yes"
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overwrite="yes"
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/>
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</trace>
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@ -32,41 +32,27 @@ let
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cpuBind = "sockets,verbose";
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cpuBind = "sockets,verbose";
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};
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};
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confMachine = targetMachine.config;
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# Compute the array of configurations
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# Compute the array of configurations
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configs = stdexp.buildConfigs {
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configs = stdexp.buildConfigs {
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var = confUnit;
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var = confUnit;
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fixed = confMachine // confExperiment;
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fixed = targetMachine.config // confExperiment;
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};
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};
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exec = {nextStage, conf, ...}: with conf; stages.exec {
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exec = {nextStage, conf, ...}: with conf; stages.exec {
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inherit nextStage;
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inherit nextStage;
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argv = [ "-t" timesteps "-p" particles ];
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argv = [ "-t" timesteps "-p" particles ];
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env = "";
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};
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};
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# We may be able to use overlays by invoking the fix function directly, but we
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# have to get the definition of the bsc packages and the garlic ones as
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# overlays.
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program = {nextStage, conf, ...}: with conf;
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program = {nextStage, conf, ...}: with conf;
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let
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let
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# We set the mpi implementation to the one specified in the conf, so all
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customPkgs = stdexp.replaceMpi conf.mpi;
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# packages in bsc will use that one.
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customPkgs = stdexp.genPkgs (self: super: {
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bsc = super.bsc // { mpi = conf.mpi; };
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});
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in
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in
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customPkgs.apps.nbody.override {
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customPkgs.apps.nbody.override {
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inherit cc blocksize mpi gitBranch;
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inherit cc blocksize mpi gitBranch;
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};
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};
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# Generate the experimental units
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pipeline = stdexp.stdStages ++ [ exec program ];
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units = map (c: stages.unit {
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conf = c;
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stages = stdexp.stdStages ++ [ exec program ];
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}) configs;
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in
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in
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stdexp.buildExperiment units
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stdexp.genExperiment { inherit configs pipeline; }
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@ -15,7 +15,7 @@ in
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rec {
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rec {
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/* Takes a list of units and builds an experiment, after executing the
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/* Takes a list of units and builds an experiment, after executing the
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trebuchet and the isolate stages. Returns the trebuchet stage. */
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trebuchet and the isolate stages. Returns the trebuchet stage. */
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buildExperiment = units: stages.trebuchet {
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buildTrebuchet = units: stages.trebuchet {
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inherit (machineConf) nixPrefix;
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inherit (machineConf) nixPrefix;
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nextStage = stages.isolate {
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nextStage = stages.isolate {
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inherit (machineConf) nixPrefix;
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inherit (machineConf) nixPrefix;
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@ -81,4 +81,21 @@ rec {
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newOverlay
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newOverlay
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];
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];
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};
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};
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replaceMpi = mpi: genPkgs (self: super: {
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bsc = super.bsc // { inherit mpi; };
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});
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# Generate the experimental units
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genUnits = {configs, pipeline}: map (c: stages.unit {
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conf = c;
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stages = pipeline;
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}) configs;
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# Generate the complete experiment
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genExperiment = {configs, pipeline}:
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let
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units = genUnits { inherit configs pipeline; };
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in
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buildTrebuchet units;
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}
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}
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