diff --git a/garlic/exp/heat/test.nix b/garlic/exp/heat/test.nix new file mode 100644 index 0000000..a2d0852 --- /dev/null +++ b/garlic/exp/heat/test.nix @@ -0,0 +1,66 @@ +{ + stdenv +, stdexp +, bsc +, targetMachine +, stages +}: + +with stdenv.lib; + +let + # Initial variable configuration + varConf = with bsc; { + bsx = [ 1024 2048 4096 ]; + }; + + machineConfig = targetMachine.config; + + # Generate the complete configuration for each unit + genConf = with bsc; c: targetMachine.config // rec { + expName = "heat"; + unitName = "${expName}.bsx-${toString bsx}"; + inherit (machineConfig) hw; + + # heat options + inherit (c) bsx; + timesteps = 10; + + # Repeat the execution of each unit 30 times + loops = 10; + + # Resources + qos = "debug"; + ntasksPerNode = 1; + nodes = 1; + time = "02:00:00"; + # Assign one socket to each task (only one process) + cpuBind = "verbose,sockets"; + jobName = unitName; + }; + + # Compute the array of configurations + configs = stdexp.buildConfigs { + inherit varConf genConf; + }; + + exec = {nextStage, conf, ...}: with conf; stages.exec { + inherit nextStage; + argv = [ "-s" 1024 "-t" timesteps ]; + env = '' + export LD_DEBUG=libs + export NANOS6_LOADER_VERBOSE=1 + cp ${nextStage}/etc/heat.conf . + ''; + }; + + program = {nextStage, conf, ...}: with conf; + bsc.garlic.apps.heat.override { + inherit bsx; + }; + + pipeline = stdexp.stdPipeline ++ [ exec program ]; + +in + + stdexp.genExperiment { inherit configs pipeline; } diff --git a/garlic/fig/heat/test.R b/garlic/fig/heat/test.R new file mode 100644 index 0000000..cbf3295 --- /dev/null +++ b/garlic/fig/heat/test.R @@ -0,0 +1,95 @@ +library(ggplot2) +library(dplyr) +library(scales) +library(jsonlite) + +args=commandArgs(trailingOnly=TRUE) + +# Read the timetable from args[1] +input_file = "input.json" +if (length(args)>0) { input_file = args[1] } + +# Load the dataset in NDJSON format +dataset = jsonlite::stream_in(file(input_file)) %>% + jsonlite::flatten() + + +# We only need the nblocks and time +df = select(dataset, config.bsx, time) %>% + rename(bsx=config.bsx) + +df$bsx = as.factor(df$bsx) + +# Normalize the time by the median +D=group_by(df, bsx) %>% + mutate(tnorm = time / median(time) - 1) + +print(D) + +ppi=300 +h=5 +w=5 + +png("box.png", width=w*ppi, height=h*ppi, res=ppi) +# +# +# +# Create the plot with the normalized time vs nblocks +p = ggplot(data=D, aes(x=bsx, y=tnorm)) + + + # Labels + labs(x="bsx", y="Normalized time", + title=sprintf("Heat normalized time"), + subtitle=input_file) + + + # Center the title + #theme(plot.title = element_text(hjust = 0.5)) + + + # Black and white mode (useful for printing) + #theme_bw() + + + # Add the maximum allowed error lines + geom_hline(yintercept=c(-0.01, 0.01), + linetype="dashed", color="red") + + + # Draw boxplots + geom_boxplot() + + + #scale_y_continuous(breaks = scales::pretty_breaks(n = 10)) + + + theme_bw() + + + theme(plot.subtitle=element_text(size=8)) + + + theme(legend.position = c(0.85, 0.85)) #+ + + + + +# Render the plot +print(p) + +## Save the png image +dev.off() +# +png("scatter.png", width=w*ppi, height=h*ppi, res=ppi) +# +## Create the plot with the normalized time vs nblocks +p = ggplot(D, aes(x=bsx, y=time)) + + + labs(x="bsx", y="Time (s)", + title=sprintf("Heat granularity"), + subtitle=input_file) + + theme_bw() + + theme(plot.subtitle=element_text(size=8)) + + theme(legend.position = c(0.5, 0.88)) + + + geom_point(shape=21, size=3) + + #scale_x_continuous(trans=log2_trans()) + + scale_y_continuous(trans=log2_trans()) + +# Render the plot +print(p) + +# Save the png image +dev.off() diff --git a/overlay.nix b/overlay.nix index 6e97e96..7d6fd1b 100644 --- a/overlay.nix +++ b/overlay.nix @@ -340,6 +340,10 @@ let mpi_omp = callPackage ./garlic/exp/hpcg/mpi+omp.nix { }; oss = callPackage ./garlic/exp/hpcg/oss.nix { }; }; + + heat = { + test = callPackage ./garlic/exp/heat/test.nix { }; + }; }; # Datasets used in the figures @@ -353,27 +357,35 @@ let hpcg = with exp.hpcg; { oss = merge [ oss ]; }; + + heat = with exp.heat; { + test = merge [ test ]; + }; }; # Figures generated from the experiments fig = with self.bsc.garlic; { nbody = { - baseline = pp.rPlot { script = ./garlic/fig/nbody/baseline.R; dataset = ds.nbody.baseline; }; - jemalloc = pp.rPlot { script = ./garlic/fig/nbody/jemalloc.R; dataset = ds.nbody.jemalloc; }; - freeCpu = pp.rPlot { script = ./garlic/fig/nbody/freeCpu.R; dataset = ds.nbody.freeCpu; }; + }; + + heat = { + test = with ds.heat; pp.rPlot { + script = ./garlic/fig/heat/test.R; + dataset = test; + }; }; }; };