Update hpcg experiments
This commit is contained in:
Raúl Peñacoba
parent
7bf3e81233
commit
01b2584688
@ -41,4 +41,6 @@ stdenv.mkDerivation rec {
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cp bin/* $out/bin/
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'';
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programPath = "/bin/xhpcg";
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}
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@ -1,169 +1,65 @@
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{
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stdenv
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, nixpkgs
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, pkgs
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, genApp
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, genConfigs
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, runWrappers
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, stdexp
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, bsc
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, targetMachine
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, stages
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}:
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with stdenv.lib;
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let
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bsc = pkgs.bsc;
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# Set variable configuration for the experiment
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varConfig = {
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cc = [ bsc.icc ];
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mpi = [ bsc.impi ];
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gitBranch = [ "garlic/mpi" ];
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makefileName = [ "MPI" ];
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# Initial variable configuration
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varConf = with bsc; {
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n = [ 104 64 ];
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};
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# Common configuration
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common = {
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# Generate the complete configuration for each unit
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genConf = with bsc; c: targetMachine.config // rec {
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# hpcg options
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n = c.n;
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cc = icc;
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mpi = impi;
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gitBranch = "garlic/mpi";
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# FIXME: fix this option in the garlic/mpi git branch
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makefileName = "MPI";
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# Repeat the execution of each unit 30 times
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loops = 30;
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# Resources
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ntasksPerNode = "48";
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nodes = "1";
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# Stage configuration
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enableSbatch = true;
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enableControl = true;
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enableExtrae = false;
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enablePerf = false;
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enableCtf = false;
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# MN4 path
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nixPrefix = "/gpfs/projects/bsc15/nix";
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qos = "debug";
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ntasksPerNode = 48;
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nodes = 1;
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time = "02:00:00";
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cpuBind = "sockets,verbose";
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jobName = "hpcg-${toString n}-${gitBranch}";
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};
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# Compute the cartesian product of all configurations
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configs = map (conf: conf // common) (genConfigs varConfig);
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stageProgram = stage:
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if stage ? programPath
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then "${stage}${stage.programPath}" else "${stage}";
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w = runWrappers;
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sbatch = {stage, conf, ...}: with conf; w.sbatch (
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# Allow a user to define a custom reservation for the job in MareNostrum4,
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# by setting the garlic.sbatch.reservation attribute in the
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# ~/.config/nixpkgs/config.nix file. If the attribute is not set, no
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# reservation is used. The user reservation may be overwritten by the
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# experiment, if the reservation is set like with nodes or ntasksPerNode.
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optionalAttrs (pkgs.config ? garlic.sbatch.reservation) {
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inherit (pkgs.config.garlic.sbatch) reservation;
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} // {
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program = stageProgram stage;
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exclusive = true;
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time = "02:00:00";
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qos = "debug";
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jobName = "hpcg";
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inherit nixPrefix nodes ntasksPerNode;
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}
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);
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control = {stage, conf, ...}: with conf; w.control {
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program = stageProgram stage;
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# Compute the array of configurations
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configs = stdexp.buildConfigs {
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inherit varConf genConf;
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};
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srun = {stage, conf, ...}: with conf; w.srun {
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program = stageProgram stage;
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srunOptions = "--cpu-bind=verbose,rank";
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inherit nixPrefix;
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};
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statspy = {stage, conf, ...}: with conf; w.statspy {
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program = stageProgram stage;
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};
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perf = {stage, conf, ...}: with conf; w.perf {
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program = stageProgram stage;
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perfArgs = "sched record -a";
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};
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nixsetup = {stage, conf, ...}: with conf; w.nixsetup {
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program = stageProgram stage;
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nixsetup = "${nixPrefix}/bin/nix-setup";
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};
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extrae = {stage, conf, ...}: w.extrae {
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program = stageProgram stage;
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traceLib = "mpi"; # mpi -> libtracempi.so
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configFile = ./extrae.xml;
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};
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ctf = {stage, conf, ...}: w.argv {
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program = stageProgram stage;
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env = ''
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export NANOS6=ctf
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export NANOS6_CTF2PRV=0
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'';
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};
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argv = {stage, conf, ...}: with conf; w.argv {
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program = stageProgram stage;
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argv = ''(
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--nx=${toString n}
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--ny=${toString n}
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--nz=${toString n}
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)'';
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};
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bscOverlay = import ../../../overlay.nix;
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genPkgs = newOverlay: nixpkgs {
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overlays = [
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bscOverlay
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newOverlay
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exec = {nextStage, conf, ...}: with conf; stages.exec {
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inherit nextStage;
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argv = [
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"--nx=${toString n}"
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"--ny=${toString n}"
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"--nz=${toString n}"
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];
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};
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# We may be able to use overlays by invoking the fix function directly, but we
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# have to get the definition of the bsc packages and the garlic ones as
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# overlays.
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hpcgFn = {stage, conf, ...}: with conf;
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let
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# We set the mpi implementation to the one specified in the conf, so all
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# packages in bsc will use that one.
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customPkgs = genPkgs (self: super: {
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bsc = super.bsc // { mpi = conf.mpi; };
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});
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in
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customPkgs.bsc.garlic.hpcg.override {
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program = {nextStage, conf, ...}: with conf;
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let
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customPkgs = stdexp.replaceMpi conf.mpi;
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in
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customPkgs.apps.hpcg.override {
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inherit cc mpi gitBranch makefileName;
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};
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stages = with common; []
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# Use sbatch to request resources first
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++ optional enableSbatch sbatch
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# Repeats the next stages N times
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++ optionals enableControl [ nixsetup control ]
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# Executes srun to launch the program in the requested nodes, and
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# immediately after enters the nix environment again, as slurmstepd launches
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# the next stages from outside the namespace.
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++ [ srun nixsetup ]
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# Intrumentation with extrae
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++ optional enableExtrae extrae
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# Optionally profile the next stages with perf
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++ optional enablePerf perf
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# Optionally profile nanos6 with the new ctf
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++ optional enableCtf ctf
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# Execute the hpcg app with the argv and env vars
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++ [ argv hpcgFn ];
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# List of actual programs to be executed
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jobs = map (conf: w.stagen { inherit conf stages; }) configs;
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pipeline = stdexp.stdPipeline ++ [ exec program ];
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in
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# We simply run each program one after another
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w.launch jobs
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stdexp.genExperiment { inherit configs pipeline; }
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@ -1,167 +1,63 @@
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{
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stdenv
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, nixpkgs
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, pkgs
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, genApp
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, genConfigs
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, runWrappers
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, stdexp
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, bsc
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, targetMachine
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, stages
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}:
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with stdenv.lib;
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let
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bsc = pkgs.bsc;
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# Set variable configuration for the experiment
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varConfig = {
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cc = [ bsc.icc ];
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gitBranch = [ "garlic/seq" ];
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# Initial variable configuration
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varConf = with bsc; {
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n = [ 104 64 ];
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};
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# Common configuration
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common = {
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# Generate the complete configuration for each unit
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genConf = with bsc; c: targetMachine.config // rec {
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# hpcg options
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n = c.n;
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cc = icc;
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mpi = impi;
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gitBranch = "garlic/seq";
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# Repeat the execution of each unit 30 times
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loops = 30;
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# Resources
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ntasksPerNode = "48";
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nodes = "1";
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# Stage configuration
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enableSbatch = true;
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enableControl = true;
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enableExtrae = false;
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enablePerf = false;
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enableCtf = false;
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# MN4 path
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nixPrefix = "/gpfs/projects/bsc15/nix";
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qos = "debug";
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ntasksPerNode = 48;
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nodes = 1;
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time = "02:00:00";
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cpuBind = "sockets,verbose";
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jobName = "hpcg-${toString n}-${gitBranch}";
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};
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# Compute the cartesian product of all configurations
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configs = map (conf: conf // common) (genConfigs varConfig);
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stageProgram = stage:
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if stage ? programPath
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then "${stage}${stage.programPath}" else "${stage}";
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w = runWrappers;
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sbatch = {stage, conf, ...}: with conf; w.sbatch (
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# Allow a user to define a custom reservation for the job in MareNostrum4,
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# by setting the garlic.sbatch.reservation attribute in the
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# ~/.config/nixpkgs/config.nix file. If the attribute is not set, no
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# reservation is used. The user reservation may be overwritten by the
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# experiment, if the reservation is set like with nodes or ntasksPerNode.
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optionalAttrs (pkgs.config ? garlic.sbatch.reservation) {
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inherit (pkgs.config.garlic.sbatch) reservation;
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} // {
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program = stageProgram stage;
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exclusive = true;
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time = "02:00:00";
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qos = "debug";
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jobName = "hpcg";
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inherit nixPrefix nodes ntasksPerNode;
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}
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);
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control = {stage, conf, ...}: with conf; w.control {
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program = stageProgram stage;
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# Compute the array of configurations
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configs = stdexp.buildConfigs {
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inherit varConf genConf;
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};
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srun = {stage, conf, ...}: with conf; w.srun {
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program = stageProgram stage;
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srunOptions = "--cpu-bind=verbose,rank";
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inherit nixPrefix;
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};
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statspy = {stage, conf, ...}: with conf; w.statspy {
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program = stageProgram stage;
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};
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perf = {stage, conf, ...}: with conf; w.perf {
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program = stageProgram stage;
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perfArgs = "sched record -a";
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};
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nixsetup = {stage, conf, ...}: with conf; w.nixsetup {
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program = stageProgram stage;
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nixsetup = "${nixPrefix}/bin/nix-setup";
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};
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extrae = {stage, conf, ...}: w.extrae {
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program = stageProgram stage;
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traceLib = "mpi"; # mpi -> libtracempi.so
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configFile = ./extrae.xml;
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};
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ctf = {stage, conf, ...}: w.argv {
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program = stageProgram stage;
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env = ''
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export NANOS6=ctf
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export NANOS6_CTF2PRV=0
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'';
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};
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argv = {stage, conf, ...}: with conf; w.argv {
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program = stageProgram stage;
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argv = ''(
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--nx=${toString n}
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--ny=${toString n}
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--nz=${toString n}
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)'';
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};
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bscOverlay = import ../../../overlay.nix;
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genPkgs = newOverlay: nixpkgs {
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overlays = [
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bscOverlay
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newOverlay
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exec = {nextStage, conf, ...}: with conf; stages.exec {
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inherit nextStage;
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argv = [
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"--nx=${toString n}"
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"--ny=${toString n}"
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"--nz=${toString n}"
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];
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};
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# We may be able to use overlays by invoking the fix function directly, but we
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# have to get the definition of the bsc packages and the garlic ones as
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# overlays.
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hpcgFn = {stage, conf, ...}: with conf;
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let
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# We set the mpi implementation to the one specified in the conf, so all
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# packages in bsc will use that one.
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customPkgs = genPkgs (self: super: {
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bsc = super.bsc // { mpi = conf.mpi; };
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});
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in
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customPkgs.bsc.garlic.hpcg.override {
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program = {nextStage, conf, ...}: with conf;
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let
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customPkgs = stdexp.replaceMpi conf.mpi;
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in
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customPkgs.apps.hpcg.override {
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inherit cc gitBranch;
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};
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stages = with common; []
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# Use sbatch to request resources first
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++ optional enableSbatch sbatch
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# Repeats the next stages N times
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++ optionals enableControl [ nixsetup control ]
|
||||
|
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# Executes srun to launch the program in the requested nodes, and
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# immediately after enters the nix environment again, as slurmstepd launches
|
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# the next stages from outside the namespace.
|
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++ [ srun nixsetup ]
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# Intrumentation with extrae
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++ optional enableExtrae extrae
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|
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# Optionally profile the next stages with perf
|
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++ optional enablePerf perf
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|
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# Optionally profile nanos6 with the new ctf
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++ optional enableCtf ctf
|
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|
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# Execute the hpcg app with the argv and env vars
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++ [ argv hpcgFn ];
|
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|
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# List of actual programs to be executed
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jobs = map (conf: w.stagen { inherit conf stages; }) configs;
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pipeline = stdexp.stdPipeline ++ [ exec program ];
|
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in
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# We simply run each program one after another
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w.launch jobs
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stdexp.genExperiment { inherit configs pipeline; }
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@ -1,171 +0,0 @@
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{
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stdenv
|
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, nixpkgs
|
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, pkgs
|
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, genApp
|
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, genConfigs
|
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, runWrappers
|
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}:
|
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|
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with stdenv.lib;
|
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|
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let
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bsc = pkgs.bsc;
|
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|
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# Set variable configuration for the experiment
|
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varConfig = {
|
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cc = [ bsc.icc ];
|
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mpi = [ bsc.impi ];
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#gitBranch = [ "garlic/tampi+send+oss+task" ];
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n = [ 104 64 ];
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nodes = [1 2 4];
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};
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# Common configuration
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common = {
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# Compile time nbody config
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gitBranch = "symgs_coloring_more_than_one_block_per_task_halos_blocking_discreete";
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# Resources
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ntasksPerNode = "48";
|
||||
|
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# Stage configuration
|
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enableSbatch = true;
|
||||
enableControl = true;
|
||||
enableExtrae = false;
|
||||
enablePerf = false;
|
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enableCtf = false;
|
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|
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# MN4 path
|
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nixPrefix = "/gpfs/projects/bsc15/nix";
|
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};
|
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|
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# Compute the cartesian product of all configurations
|
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configs = map (conf: conf // common) (genConfigs varConfig);
|
||||
|
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stageProgram = stage:
|
||||
if stage ? programPath
|
||||
then "${stage}${stage.programPath}" else "${stage}";
|
||||
|
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w = runWrappers;
|
||||
|
||||
sbatch = {stage, conf, ...}: with conf; w.sbatch (
|
||||
# Allow a user to define a custom reservation for the job in MareNostrum4,
|
||||
# by setting the garlic.sbatch.reservation attribute in the
|
||||
# ~/.config/nixpkgs/config.nix file. If the attribute is not set, no
|
||||
# reservation is used. The user reservation may be overwritten by the
|
||||
# experiment, if the reservation is set like with nodes or ntasksPerNode.
|
||||
optionalAttrs (pkgs.config ? garlic.sbatch.reservation) {
|
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inherit (pkgs.config.garlic.sbatch) reservation;
|
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} // {
|
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program = stageProgram stage;
|
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exclusive = true;
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time = "02:00:00";
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qos = "debug";
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jobName = "nbody-tampi";
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inherit nixPrefix nodes ntasksPerNode;
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}
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);
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control = {stage, conf, ...}: with conf; w.control {
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program = stageProgram stage;
|
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};
|
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|
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srun = {stage, conf, ...}: with conf; w.srun {
|
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program = stageProgram stage;
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srunOptions = "--cpu-bind=verbose,rank";
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inherit nixPrefix;
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};
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statspy = {stage, conf, ...}: with conf; w.statspy {
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program = stageProgram stage;
|
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};
|
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|
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perf = {stage, conf, ...}: with conf; w.perf {
|
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program = stageProgram stage;
|
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perfArgs = "sched record -a";
|
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};
|
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|
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nixsetup = {stage, conf, ...}: with conf; w.nixsetup {
|
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program = stageProgram stage;
|
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nixsetup = "${nixPrefix}/bin/nix-setup";
|
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};
|
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|
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extrae = {stage, conf, ...}: w.extrae {
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program = stageProgram stage;
|
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traceLib = "mpi"; # mpi -> libtracempi.so
|
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configFile = ./extrae.xml;
|
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};
|
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|
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ctf = {stage, conf, ...}: w.argv {
|
||||
program = stageProgram stage;
|
||||
env = ''
|
||||
export NANOS6=ctf
|
||||
export NANOS6_CTF2PRV=0
|
||||
'';
|
||||
};
|
||||
|
||||
argv = {stage, conf, ...}: with conf; w.argv {
|
||||
program = stageProgram stage;
|
||||
argv = ''(
|
||||
--nx=${toString n}
|
||||
--ny=${toString n}
|
||||
--nz=${toString n}
|
||||
)'';
|
||||
};
|
||||
|
||||
bscOverlay = import ../../../overlay.nix;
|
||||
|
||||
genPkgs = newOverlay: nixpkgs {
|
||||
overlays = [
|
||||
bscOverlay
|
||||
newOverlay
|
||||
];
|
||||
};
|
||||
|
||||
# We may be able to use overlays by invoking the fix function directly, but we
|
||||
# have to get the definition of the bsc packages and the garlic ones as
|
||||
# overlays.
|
||||
|
||||
hpcgFn = {stage, conf, ...}: with conf;
|
||||
let
|
||||
# We set the mpi implementation to the one specified in the conf, so all
|
||||
# packages in bsc will use that one.
|
||||
customPkgs = genPkgs (self: super: {
|
||||
bsc = super.bsc // { mpi = conf.mpi; };
|
||||
});
|
||||
in
|
||||
customPkgs.bsc.garlic.hpcg.override {
|
||||
inherit cc mpi gitBranch;
|
||||
};
|
||||
|
||||
stages = with common; []
|
||||
# Use sbatch to request resources first
|
||||
++ optional enableSbatch sbatch
|
||||
|
||||
# Repeats the next stages N times
|
||||
++ optionals enableControl [ nixsetup control ]
|
||||
|
||||
# Executes srun to launch the program in the requested nodes, and
|
||||
# immediately after enters the nix environment again, as slurmstepd launches
|
||||
# the next stages from outside the namespace.
|
||||
++ [ srun nixsetup ]
|
||||
|
||||
# Intrumentation with extrae
|
||||
++ optional enableExtrae extrae
|
||||
|
||||
# Optionally profile the next stages with perf
|
||||
++ optional enablePerf perf
|
||||
|
||||
# Optionally profile nanos6 with the new ctf
|
||||
++ optional enableCtf ctf
|
||||
|
||||
# Execute the nbody app with the argv and env vars
|
||||
++ [ argv hpcgFn ];
|
||||
|
||||
# List of actual programs to be executed
|
||||
jobs = map (conf: w.stagen { inherit conf stages; }) configs;
|
||||
|
||||
in
|
||||
# We simply run each program one after another
|
||||
w.launch jobs
|
||||
@ -197,7 +197,7 @@ let
|
||||
gitBranch = "garlic/mpi+send+seq";
|
||||
};
|
||||
|
||||
hpcg = callPackage ./garlic/hpcg {
|
||||
hpcg = callPackage ./garlic/apps/hpcg/default.nix {
|
||||
cc = self.bsc.icc;
|
||||
gitBranch = "garlic/seq";
|
||||
};
|
||||
|
||||
Loading…
Reference in New Issue
Block a user