169 lines
7.0 KiB
R
169 lines
7.0 KiB
R
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library(ggplot2)
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library(dplyr, warn.conflicts = FALSE)
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library(scales)
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library(jsonlite)
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library(viridis, warn.conflicts = FALSE)
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# Load the arguments (argv)
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args = commandArgs(trailingOnly=TRUE)
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if (length(args)>0) { input_file = args[1] } else { input_file = "input" }
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dfNuma = jsonlite::stream_in(file(input_file), verbose=FALSE) %>%
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jsonlite::flatten() %>%
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select(config.blocksize, config.gitBranch, config.socketAtt, config.useNumact, unit, time) %>%
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rename(blocksize=config.blocksize, branch=config.gitBranch, attachment=config.socketAtt, usenuma=config.useNumact) %>%
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mutate(blocksize = as.factor(blocksize)) %>%
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mutate(branch = as.factor(branch)) %>%
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mutate(attachment = as.factor(attachment)) %>%
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mutate(usenuma = as.factor(usenuma)) %>%
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mutate(unit = as.factor(unit)) %>%
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group_by(unit) %>%
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mutate(median.time = median(time)) %>%
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mutate(normalized.time = time / median.time - 1) %>%
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mutate(log.median.time = log(median.time)) %>%
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filter(usenuma == TRUE) %>%
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ungroup()
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dfNonuma = jsonlite::stream_in(file(input_file), verbose=FALSE) %>%
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jsonlite::flatten() %>%
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select(config.blocksize, config.gitBranch, config.socketAtt, config.useNumact, unit, time) %>%
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rename(blocksize=config.blocksize, branch=config.gitBranch, attachment=config.socketAtt, usenuma=config.useNumact) %>%
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mutate(blocksize = as.factor(blocksize)) %>%
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mutate(branch = as.factor(branch)) %>%
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mutate(attachment = as.factor(attachment)) %>%
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mutate(usenuma = as.factor(usenuma)) %>%
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mutate(unit = as.factor(unit)) %>%
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group_by(unit) %>%
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mutate(median.time = median(time)) %>%
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mutate(normalized.time = time / median.time - 1) %>%
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mutate(log.median.time = log(median.time)) %>%
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filter(usenuma == FALSE) %>%
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ungroup()
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dpi = 300
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h = 5
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w = 8
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# ---------------------------------------------------------------------
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p = ggplot(dfNuma, aes(x=blocksize, y=median.time, color=attachment)) +
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geom_point() +
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geom_line(aes(group=attachment)) +
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theme_bw() +
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labs(x="Blocksize", y="Median time (s)", title="NBody Granularity (tampi+send+oss+task | numactl ON | 4 Nodes): Median Time",
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subtitle=input_file, color="Rank Attachment") +
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theme(plot.subtitle=element_text(size=5)) +
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theme(legend.position="bottom") +
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scale_color_manual(labels = c("RanksPerNode", "RanksPerSocket"), values=c("blue", "red"))
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ggsave("median-numactl.time.png", plot=p, width=w, height=h, dpi=dpi)
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ggsave("median-numactl.time.pdf", plot=p, width=w, height=h, dpi=dpi)
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p = ggplot(dfNonuma, aes(x=blocksize, y=median.time, color=attachment)) +
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geom_point() +
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geom_line(aes(group=attachment)) +
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theme_bw() +
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labs(x="Blocksize", y="Median time (s)", title="NBody Granularity (tampi+send+oss+task | numactl OFF | 4 Nodes): Median Time",
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subtitle=input_file, color="Rank Attachment") +
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theme(plot.subtitle=element_text(size=5)) +
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theme(legend.position="bottom") +
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scale_color_manual(labels = c("RanksPerNode", "RanksPerSocket"), values=c("blue", "red"))
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ggsave("median.time.png", plot=p, width=w, height=h, dpi=dpi)
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ggsave("median.time.pdf", plot=p, width=w, height=h, dpi=dpi)
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# ---------------------------------------------------------------------
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p = ggplot(dfNuma, aes(x=blocksize, y=normalized.time, color=attachment)) +
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geom_boxplot() +
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geom_hline(yintercept=c(-0.01, 0.01), linetype="dashed", color="red") +
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facet_wrap(~ attachment) +
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theme_bw() +
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labs(x="Blocksize", y="Normalized Time", title="NBody Granularity (tampi+send+oss+task | numactl ON | 4 Nodes): Normalized Time",
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subtitle=input_file, color="Rank Attachment") +
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theme(plot.subtitle=element_text(size=5)) +
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theme(legend.position="bottom") +
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scale_color_manual(labels = c("RanksPerNode", "RanksPerSocket"), values=c("blue", "red"))
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ggsave("normalized-numactl.time.png", plot=p, width=w, height=h, dpi=dpi)
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ggsave("normalized-numactl.time.pdf", plot=p, width=w, height=h, dpi=dpi)
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p = ggplot(dfNonuma, aes(x=blocksize, y=normalized.time, color=attachment)) +
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geom_boxplot() +
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geom_hline(yintercept=c(-0.01, 0.01), linetype="dashed", color="red") +
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facet_wrap(~ attachment) +
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theme_bw() +
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labs(x="Blocksize", y="Normalized Time", title="NBody Granularity (tampi+send+oss+task | 4 Nodes): Normalized Time",
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subtitle=input_file, color="Rank Attachment") +
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theme(plot.subtitle=element_text(size=5)) +
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theme(legend.position="bottom") +
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scale_color_manual(labels = c("RanksPerNode", "RanksPerSocket"), values=c("blue", "red"))
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ggsave("normalized.time.png", plot=p, width=w, height=h, dpi=dpi)
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ggsave("normalized.time.pdf", plot=p, width=w, height=h, dpi=dpi)
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# ---------------------------------------------------------------------
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p = ggplot(dfNuma, aes(x=blocksize, y=time, color=attachment)) +
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geom_point(shape=21, size=3) +
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theme_bw() +
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labs(x="Blocksize", y="Time (s)", title="NBody Granularity (tampi+send+oss+task | numactl ON | 4 Nodes): Time",
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subtitle=input_file, color="Rank Attachment") +
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theme(plot.subtitle=element_text(size=5)) +
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theme(legend.position="bottom") +
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scale_color_manual(labels = c("RanksPerNode", "RanksPerSocket"), values=c("blue", "red"))
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ggsave("time-numactl.png", plot=p, width=w, height=h, dpi=dpi)
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ggsave("time-numactl.pdf", plot=p, width=w, height=h, dpi=dpi)
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p = ggplot(dfNonuma, aes(x=blocksize, y=time, color=attachment)) +
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geom_point(shape=21, size=3) +
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theme_bw() +
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labs(x="Blocksize", y="Time (s)", title="NBody Granularity (tampi+send+oss+task | 4 Nodes): Time",
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subtitle=input_file, color="Rank Attachment") +
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theme(plot.subtitle=element_text(size=5)) +
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theme(legend.position="bottom") +
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scale_color_manual(labels = c("RanksPerNode", "RanksPerSocket"), values=c("blue", "red"))
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ggsave("time.png", plot=p, width=w, height=h, dpi=dpi)
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ggsave("time.pdf", plot=p, width=w, height=h, dpi=dpi)
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# ---------------------------------------------------------------------
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p = ggplot(dfNuma, aes(x=blocksize, y=attachment, fill=median.time)) +
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geom_raster() +
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scale_fill_viridis(option="plasma") +
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coord_fixed() +
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theme_bw() +
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labs(x="Blocksize", y="Attachment", title="NBody Granularity (tampi+send+oss+task | numactl ON | 4 Nodes): Time",
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subtitle=input_file, color = "Rank Attachment") +
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theme(plot.subtitle=element_text(size=5)) +
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theme(legend.position="bottom") +
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scale_color_manual(labels = c("RanksPerNode", "RanksPerSocket"), values=c("blue", "red"))
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ggsave("time-numactl.heatmap.png", plot=p, width=w, height=h, dpi=dpi)
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ggsave("time-numactl.heatmap.pdf", plot=p, width=w, height=h, dpi=dpi)
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p = ggplot(dfNonuma, aes(x=blocksize, y=attachment, fill=median.time)) +
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geom_raster() +
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scale_fill_viridis(option="plasma") +
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coord_fixed() +
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theme_bw() +
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labs(x="Blocksize", y="Attachment", title="NBody Granularity (tampi+send+oss+task | 4 Nodes): Time",
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subtitle=input_file, color = "Rank Attachment") +
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theme(plot.subtitle=element_text(size=5)) +
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theme(legend.position="bottom") +
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scale_color_manual(labels = c("RanksPerNode", "RanksPerSocket"), values=c("blue", "red"))
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ggsave("time.heatmap.png", plot=p, width=w, height=h, dpi=dpi)
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ggsave("time.heatmap.pdf", plot=p, width=w, height=h, dpi=dpi)
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