bscpkgs/garlic/exp/nbody/tampi.nix

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{
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stdenv
, nixpkgs
, pkgs
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, genApp
, genConfigs
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, runWrappers
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}:
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with stdenv.lib;
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let
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bsc = pkgs.bsc;
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# Set variable configuration for the experiment
varConfig = {
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cc = [ bsc.icc ];
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mpi = [ bsc.impi ];
blocksize = [ 1024 ];
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};
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# Common configuration
common = {
# Compile time nbody config
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gitBranch = "garlic/tampi+send+oss+task";
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# nbody runtime options
particles = 1024*4;
timesteps = 10;
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# Resources
ntasksPerNode = "2";
nodes = "2";
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# Stage configuration
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enableRunexp = true;
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enableSbatch = true;
enableControl = true;
enableExtrae = false;
enablePerf = false;
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enableCtf = false;
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# MN4 path
nixPrefix = "/gpfs/projects/bsc15/nix";
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};
# Compute the cartesian product of all configurations
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configs = map (conf: conf // common) (genConfigs varConfig);
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stageProgram = stage:
if stage ? programPath
then "${stage}${stage.programPath}" else "${stage}";
w = runWrappers;
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sbatch = {stage, conf, ...}: with conf; w.sbatch (
# Allow a user to define a custom reservation for the job in MareNostrum4,
# by setting the garlic.sbatch.reservation attribute in the
# ~/.config/nixpkgs/config.nix file. If the attribute is not set, no
# reservation is used. The user reservation may be overwritten by the
# experiment, if the reservation is set like with nodes or ntasksPerNode.
optionalAttrs (pkgs.config ? garlic.sbatch.reservation) {
inherit (pkgs.config.garlic.sbatch) reservation;
} // {
program = stageProgram stage;
exclusive = true;
time = "02:00:00";
qos = "debug";
jobName = "nbody-tampi";
inherit nixPrefix nodes ntasksPerNode;
}
);
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control = {stage, conf, ...}: with conf; w.control {
program = stageProgram stage;
};
srun = {stage, conf, ...}: with conf; w.srun {
program = stageProgram stage;
srunOptions = "--cpu-bind=verbose,socket";
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inherit nixPrefix;
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};
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statspy = {stage, conf, ...}: with conf; w.statspy {
program = stageProgram stage;
};
perf = {stage, conf, ...}: with conf; w.perf {
program = stageProgram stage;
perfArgs = "sched record -a";
};
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isolate = {stage, conf, ...}: with conf; w.isolate {
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program = stageProgram stage;
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clusterName = "mn4";
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inherit nixPrefix;
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};
extrae = {stage, conf, ...}: w.extrae {
program = stageProgram stage;
traceLib = "mpi"; # mpi -> libtracempi.so
configFile = ./extrae.xml;
};
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ctf = {stage, conf, ...}: w.argv {
program = stageProgram stage;
env = ''
export NANOS6=ctf
export NANOS6_CTF2PRV=0
'';
};
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argv = {stage, conf, ...}: w.argv {
program = stageProgram stage;
argv = ''( -t ${toString conf.timesteps}
-p ${toString conf.particles} )'';
};
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bscOverlay = import ../../../overlay.nix;
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genPkgs = newOverlay: nixpkgs {
overlays = [
bscOverlay
newOverlay
];
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};
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# We may be able to use overlays by invoking the fix function directly, but we
# have to get the definition of the bsc packages and the garlic ones as
# overlays.
nbodyFn = {stage, conf, ...}: with conf;
let
# We set the mpi implementation to the one specified in the conf, so all
# packages in bsc will use that one.
customPkgs = genPkgs (self: super: {
bsc = super.bsc // { mpi = conf.mpi; };
});
in
customPkgs.bsc.garlic.nbody.override {
inherit cc blocksize mpi gitBranch;
};
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launch = w.launch.override {
nixPrefix = common.nixPrefix;
};
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stages = with common; []
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# Launch the experiment remotely
#++ optional enableRunexp runexp
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# Use sbatch to request resources first
++ optional enableSbatch sbatch
# Repeats the next stages N times
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++ optionals enableControl [ isolate control ]
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# Executes srun to launch the program in the requested nodes, and
# immediately after enters the nix environment again, as slurmstepd launches
# the next stages from outside the namespace.
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++ [ srun isolate ]
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# Intrumentation with extrae
++ optional enableExtrae extrae
# Optionally profile the next stages with perf
++ optional enablePerf perf
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# Optionally profile nanos6 with the new ctf
++ optional enableCtf ctf
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# Execute the nbody app with the argv and env vars
++ [ argv nbodyFn ];
# List of actual programs to be executed
jobs = map (conf: w.stagen { inherit conf stages; }) configs;
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launcher = launch jobs;
runexp = stage: w.runexp {
program = stageProgram stage;
nixPrefix = common.nixPrefix;
};
isolatedRun = stage: isolate {
inherit stage;
conf = common;
};
final = runexp (isolatedRun launcher);
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in
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# We simply run each program one after another
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#launch jobs
final