bscpkgs/bsc/garlic/sbatch.nix

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{
stdenv
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, numactl
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}:
{
app
, prefix ? ""
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, argv ? ""
, binary ? "/bin/run"
, ntasks ? null
, exclusive ? true # By default we run in exclusive mode
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, chdir ? "."
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, qos ? null
, time ? null
, output ? "job_%j.out"
, error ? "job_%j.err"
, contiguous ? null
, extra ? null
}:
with stdenv.lib;
let
sbatchOpt = name: value: optionalString (value!=null)
"#SBATCH --${name}=${value}\n";
sbatchEnable = name: value: optionalString (value!=null)
"#SBATCH --${name}\n";
in
stdenv.mkDerivation rec {
name = "${app.name}-job";
preferLocalBuild = true;
src = ./.;
buildInputs = [ app ];
#SBATCH --tasks-per-node=48
#SBATCH --ntasks-per-socket=24
#SBATCH --cpus-per-task=1
dontBuild = true;
installPhase = ''
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mkdir -p $out
cat > $out/job <<EOF
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#!/bin/bash
#SBATCH --job-name="${name}"
''
+ sbatchOpt "ntasks" ntasks
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+ sbatchOpt "chdir" chdir
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+ sbatchOpt "output" output
+ sbatchOpt "error" error
+ sbatchEnable "exclusive" exclusive
+ sbatchOpt "time" time
+ sbatchOpt "qos" qos
+ optionalString (extra!=null) extra
+
''
srun ${prefix}${app}${binary} ${argv}
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EOF
'';
}