Add quickstart guide

Use agenix to store the credentials safely.

m/common/base/nix.nix

@@ -23,7 +23,6 @@
       trusted-users = [ "@wheel" ];
       flake-registry = pkgs.writeText "global-registry.json"
         ''{"flakes":[],"version":2}'';
-      keep-outputs = true;
     };
 
     gc = {

m/common/base/ssh.nix

@@ -10,7 +10,7 @@ in
 
   # Connect to intranet git hosts via proxy
   programs.ssh.extraConfig = ''
-    Host bscpm02.bsc.es bscpm03.bsc.es bscpm04.bsc.es gitlab-internal.bsc.es alya.gitlab.bsc.es
+    Host bscpm02.bsc.es bscpm03.bsc.es gitlab-internal.bsc.es alya.gitlab.bsc.es
       User git
       ProxyCommand nc -X connect -x hut:23080 %h %p
 
@@ -22,7 +22,6 @@ in
   programs.ssh.knownHosts = hostsKeys // {
     "gitlab-internal.bsc.es".publicKey = "ssh-ed25519 AAAAC3NzaC1lZDI1NTE5AAAAIF9arsAOSRB06hdy71oTvJHG2Mg8zfebADxpvc37lZo3";
     "bscpm03.bsc.es".publicKey = "ssh-ed25519 AAAAC3NzaC1lZDI1NTE5AAAAIM2NuSUPsEhqz1j5b4Gqd+MWFnRqyqY57+xMvBUqHYUS";
-    "bscpm04.bsc.es".publicKey = "ssh-ed25519 AAAAC3NzaC1lZDI1NTE5AAAAIPx4mC0etyyjYUT2Ztc/bs4ZXSbVMrogs1ZTP924PDgT";
     "glogin1.bsc.es".publicKey = "ssh-ed25519 AAAAC3NzaC1lZDI1NTE5AAAAIFsHsZGCrzpd4QDVn5xoDOtrNBkb0ylxKGlyBt6l9qCz";
     "glogin2.bsc.es".publicKey = "ssh-ed25519 AAAAC3NzaC1lZDI1NTE5AAAAIFsHsZGCrzpd4QDVn5xoDOtrNBkb0ylxKGlyBt6l9qCz";
   };

m/common/base/users.nix

@@ -81,7 +81,7 @@
         home = "/home/Computational/abonerib";
         description = "Aleix Boné";
         group = "Computational";
-        hosts = [ "owl1" "owl2" "hut" "raccoon" "fox" ];
+        hosts = [ "owl1" "owl2" "hut" "raccoon" ];
         hashedPassword = "$6$V1EQWJr474whv7XJ$OfJ0wueM2l.dgiJiiah0Tip9ITcJ7S7qDvtSycsiQ43QBFyP4lU0e0HaXWps85nqB4TypttYR4hNLoz3bz662/";
         openssh.authorizedKeys.keys = [
           "ssh-ed25519 AAAAC3NzaC1lZDI1NTE5AAAAIIIFiqXqt88VuUfyANkZyLJNiuroIITaGlOOTMhVDKjf abonerib@bsc"
@@ -126,19 +126,6 @@
           "ssh-ed25519 AAAAC3NzaC1lZDI1NTE5AAAAIGEfy6F4rF80r4Cpo2H5xaWqhuUZzUsVsILSKGJzt5jF dalvare1@ssfhead"
         ];
       };
-
-      varcila = {
-        uid = 5650;
-        isNormalUser = true;
-        home = "/home/Computational/varcila";
-        description = "Vincent Arcila";
-        group = "Computational";
-        hosts = [ "hut" "fox" ];
-        hashedPassword = "$6$oB0Tcn99DcM4Ch$Vn1A0ulLTn/8B2oFPi9wWl/NOsJzaFAWjqekwcuC9sMC7cgxEVb.Nk5XSzQ2xzYcNe5MLtmzkVYnRS1CqP39Y0";
-        openssh.authorizedKeys.keys = [
-          "ssh-ed25519 AAAAC3NzaC1lZDI1NTE5AAAAIKGt0ESYxekBiHJQowmKpfdouw0hVm3N7tUMtAaeLejK vincent@varch"
-        ];
-      };
     };
 
     groups = {

m/common/xeon/net.nix

@@ -11,7 +11,7 @@
 
     proxy = {
       default = "http://hut:23080/";
-      noProxy = "127.0.0.1,localhost,internal.domain,10.0.40.40,hut";
+      noProxy = "127.0.0.1,localhost,internal.domain,10.0.40.40";
       # Don't set all_proxy as go complains and breaks the gitlab runner, see:
       # https://github.com/golang/go/issues/16715
       allProxy = null;

m/hut/configuration.nix

@@ -56,11 +56,6 @@
         iptables -A nixos-fw -p tcp -s 10.0.40.30 --dport 23080 -j nixos-fw-log-refuse
         iptables -A nixos-fw -p tcp -s 10.0.40.0/24 --dport 23080 -j nixos-fw-accept
       '';
-      # Flush all rules and chains on stop so it won't break on start
-      extraStopCommands = ''
-        iptables -F
-        iptables -X
-      '';
     };
   };
 

m/hut/gitlab-runner.nix

@@ -22,8 +22,8 @@
           "--docker-network-mode host"
         ];
         environmentVariables = {
-          https_proxy = "http://hut:23080";
-          http_proxy = "http://hut:23080";
+          https_proxy = "http://localhost:23080";
+          http_proxy = "http://localhost:23080";
         };
       };
     in {
@@ -38,13 +38,14 @@
       gitlab-bsc-docker = {
         # gitlab.bsc.es still uses the old token mechanism
         registrationConfigFile = config.age.secrets.gitlab-bsc-docker.path;
-        tagList = [ "docker" "hut" ];
         environmentVariables = {
-          # We cannot access the hut local interface from docker, so we connect
-          # to hut directly via the ethernet one.
-          https_proxy = "http://hut:23080";
-          http_proxy = "http://hut:23080";
+          https_proxy = "http://localhost:23080";
+          http_proxy = "http://localhost:23080";
         };
+        # FIXME
+        registrationFlags = [
+          "--docker-network-mode host"
+        ];
         executor = "docker";
         dockerImage = "alpine";
         dockerVolumes = [
@@ -52,15 +53,7 @@
           "/nix/var/nix/db:/nix/var/nix/db:ro"
           "/nix/var/nix/daemon-socket:/nix/var/nix/daemon-socket:ro"
         ];
-        dockerExtraHosts = [
-          # Required to pass the proxy via hut
-          "hut:10.0.40.7"
-        ];
         dockerDisableCache = true;
-        registrationFlags = [
-          # Increase build log length to 64 MiB
-          "--output-limit 65536"
-        ];
         preBuildScript = pkgs.writeScript "setup-container" ''
           mkdir -p -m 0755 /nix/var/log/nix/drvs
           mkdir -p -m 0755 /nix/var/nix/gcroots
@@ -73,39 +66,32 @@
           mkdir -p -m 0700 "$HOME/.nix-defexpr"
           mkdir -p -m 0700 "$HOME/.ssh"
           cat > "$HOME/.ssh/config" << EOF
-          Host bscpm04.bsc.es gitlab-internal.bsc.es
+          Host bscpm03.bsc.es gitlab-internal.bsc.es
             User git
             ProxyCommand nc -X connect -x hut:23080 %h %p
           Host amdlogin1.bsc.es armlogin1.bsc.es hualogin1.bsc.es glogin1.bsc.es glogin2.bsc.es fpgalogin1.bsc.es
             ProxyCommand nc -X connect -x hut:23080 %h %p
           EOF
           cat >> "$HOME/.ssh/known_hosts" << EOF
-          bscpm04.bsc.es ssh-ed25519 AAAAC3NzaC1lZDI1NTE5AAAAIPx4mC0etyyjYUT2Ztc/bs4ZXSbVMrogs1ZTP924PDgT
+          bscpm03.bsc.es ssh-ed25519 AAAAC3NzaC1lZDI1NTE5AAAAIM2NuSUPsEhqz1j5b4Gqd+MWFnRqyqY57+xMvBUqHYUS
           gitlab-internal.bsc.es ssh-ed25519 AAAAC3NzaC1lZDI1NTE5AAAAIF9arsAOSRB06hdy71oTvJHG2Mg8zfebADxpvc37lZo3
           EOF
           . ${pkgs.nix}/etc/profile.d/nix-daemon.sh
-          # Required to load SSL certificate paths
-          . ${pkgs.cacert}/nix-support/setup-hook
+          ${pkgs.nix}/bin/nix-channel --add https://nixos.org/channels/nixos-24.11 nixpkgs
+          ${pkgs.nix}/bin/nix-channel --update nixpkgs
+          ${pkgs.nix}/bin/nix-env -i ${lib.concatStringsSep " " (with pkgs; [ nix cacert git openssh netcat curl ])}
         '';
         environmentVariables = {
           ENV = "/etc/profile";
           USER = "root";
           NIX_REMOTE = "daemon";
-          PATH = "${config.system.path}/bin:/bin:/sbin:/usr/bin:/usr/sbin";
+          PATH = "/nix/var/nix/profiles/default/bin:/nix/var/nix/profiles/default/sbin:/bin:/sbin:/usr/bin:/usr/sbin";
+          NIX_SSL_CERT_FILE = "/nix/var/nix/profiles/default/etc/ssl/certs/ca-bundle.crt";
         };
       };
     };
   };
 
-  # DOCKER* chains are useless, override at FORWARD and nixos-fw
-  networking.firewall.extraCommands = ''
-    # Don't forward any traffic from docker
-    iptables -I FORWARD 1 -p all -i docker0 -j nixos-fw-log-refuse
-
-    # Allow incoming traffic from docker to 23080
-    iptables -A nixos-fw -p tcp -i docker0 -d hut --dport 23080 -j ACCEPT
-  '';
-
   #systemd.services.gitlab-runner.serviceConfig.Shell = "${pkgs.bash}/bin/bash";
   systemd.services.gitlab-runner.serviceConfig.DynamicUser = lib.mkForce false;
   systemd.services.gitlab-runner.serviceConfig.User = "gitlab-runner";

m/hut/monitoring.nix

@@ -46,7 +46,7 @@
   services.prometheus = {
     enable = true;
     port = 9001;
-    retentionTime = "5y";
+    retentionTime = "1y";
     listenAddress = "127.0.0.1";
   };
 
@@ -76,7 +76,7 @@
         group = "root";
         user = "root";
         configFile = config.age.secrets.ipmiYml.path;
-        # extraFlags = [ "--log.level=debug" ];
+        extraFlags = [ "--log.level=debug" ];
         listenAddress = "127.0.0.1";
       };
       node = {
@@ -250,14 +250,6 @@
           module = [ "raccoon" ];
         };
       }
-      {
-        job_name = "raccoon";
-        static_configs = [
-          {
-            targets = [ "127.0.0.1:19002" ]; # Node exporter
-          }
-        ];
-      }
       {
         job_name = "ipmi-fox";
         metrics_path = "/ipmi";

m/hut/nginx.nix

@@ -12,19 +12,16 @@ let
     installPhase = ''
       cp -r public $out
     '';
-    # Don't mess doc/
-    dontFixup = true;
   };
 in
 {
-  networking.firewall.allowedTCPPorts = [ 80 ];
   services.nginx = {
     enable = true;
     virtualHosts."jungle.bsc.es" = {
       root = "${website}";
       listen = [
         {
-          addr = "0.0.0.0";
+          addr = "127.0.0.1";
           port = 80;
         }
       ];
@@ -41,7 +38,7 @@ in
           proxy_redirect http:// $scheme://;
         }
         location /cache {
-          rewrite ^/cache/(.*) /$1 break;
+          rewrite ^/cache(.*) /$1 break;
           proxy_pass http://127.0.0.1:5000;
           proxy_redirect http:// $scheme://;
         }

m/module/hut-substituter.nix

@@ -1,10 +0,0 @@
-{ config, ... }:
-{
-  nix.settings =
-    # Don't add hut as a cache to itself
-    assert config.networking.hostName != "hut";
-    {
-      substituters = [ "http://hut/cache" ];
-      trusted-public-keys = [ "jungle.bsc.es:pEc7MlAT0HEwLQYPtpkPLwRsGf80ZI26aj29zMw/HH0=" ];
-    };
-}

m/module/slurm-client.nix

@@ -27,6 +27,22 @@ let
     done
   '';
 
+  prolog = pkgs.writeScript "prolog.sh" ''
+    #!/usr/bin/env bash
+
+    echo "hello from the prolog"
+
+    exit 0
+  '';
+
+  epilog = pkgs.writeScript "epilog.sh" ''
+    #!/usr/bin/env bash
+
+    echo "hello from the epilog"
+
+    exit 0
+  '';
+
 in {
   systemd.services.slurmd.serviceConfig = {
     # Kill all processes in the control group on stop/restart. This will kill
@@ -43,13 +59,14 @@ in {
     clusterName = "jungle";
     nodeName = [
       "owl[1,2]  Sockets=2 CoresPerSocket=14 ThreadsPerCore=2 Feature=owl"
-      "fox       Sockets=2 CoresPerSocket=96 ThreadsPerCore=1 Feature=fox"
+      "fox       Sockets=2 CoresPerSocket=96 ThreadsPerCore=2 Feature=fox"
       "hut       Sockets=2 CoresPerSocket=14 ThreadsPerCore=2"
     ];
 
     partitionName = [
       "owl Nodes=owl[1-2]     Default=YES DefaultTime=01:00:00 MaxTime=INFINITE State=UP"
       "fox Nodes=fox          Default=NO  DefaultTime=01:00:00 MaxTime=INFINITE State=UP"
+      "all Nodes=owl[1-2],hut Default=NO  DefaultTime=01:00:00 MaxTime=INFINITE State=UP"
     ];
 
     # See slurm.conf(5) for more details about these options.

m/owl1/configuration.nix

@@ -8,7 +8,6 @@
     ../module/slurm-client.nix
     ../module/slurm-firewall.nix
     ../module/debuginfod.nix
-    ../module/hut-substituter.nix
   ];
 
   # Select the this using the ID to avoid mismatches

m/owl2/configuration.nix

@@ -8,7 +8,6 @@
     ../module/slurm-client.nix
     ../module/slurm-firewall.nix
     ../module/debuginfod.nix
-    ../module/hut-substituter.nix
   ];
 
   # Select the this using the ID to avoid mismatches

m/raccoon/configuration.nix

@@ -25,11 +25,6 @@
     } ];
   };
 
-  nix.settings = {
-    substituters = [ "https://jungle.bsc.es/cache" ];
-    trusted-public-keys = [ "jungle.bsc.es:pEc7MlAT0HEwLQYPtpkPLwRsGf80ZI26aj29zMw/HH0=" ];
-  };
-
   # Configure Nvidia driver to use with CUDA
   hardware.nvidia.package = config.boot.kernelPackages.nvidiaPackages.production;
   hardware.graphics.enable = true;

secrets/gitlab-bsc-docker-token.age

@@ -1,11 +1,9 @@
 age-encryption.org/v1
--> ssh-ed25519 HY2yRg WSdjyQPzBJ4JbzQpGeq1AAYpWKoXmLI1ZtmNmM5QOzs
-qGDlDT31DQF1DdHen0+5+52DdsQlabJdA2pOB5O1I6g
--> ssh-ed25519 CAWG4Q wioWMDxQjN+d4JdIbCwZg0DLQu1OH2mV6gukRprjuAs
-670fE61hidOEh20hHiQAhP0+CjDF0WMBNzgwkGT8Yqg
--> ssh-ed25519 MSF3dg DN19uvAEtqq4708P6HpuX9i/o/qAvHX6dj69dCF2H1o
-4Lu9GnjiFLMeXJ2C7aVPJsCHCQVlhylNWJi896Av92s
---- 7cKBwOYNOUZ2h3/kAY09aSMASZSxX7hZIT4kvlIiT6w
-³6—çà•äfQF5=¦bX+‡v e`Ï7/øªA~PÎÖѦ7<15>Ì
-´ÖA÷)·h³ù=oZ¸$é^´V0ñ/Ü…µr
-k¸uœbĶ:R‘<52>>^gŒõ¼ik_*%<0B>a7ùKGæ<47>ÐÖçâ&­PI¶£n
+-> ssh-ed25519 HY2yRg 4Xns3jybBuv8flzd+h3DArVBa/AlKjt1J9jAyJsasCE
+uyVjJxh5i8aGgAgCpPl6zTYeIkf9mIwURof51IKWvwE
+-> ssh-ed25519 CAWG4Q T2r6r1tyNgq1XlYXVtLJFfOfUnm6pSVlPwUqC1pkyRo
+9yDoKU0EC34QMUXYnsJvhPCLm6oD9w7NlTi2sheoBqQ
+-> ssh-ed25519 MSF3dg Bh9DekFTq+QMUEAonwcaIAJX4Js1O7cHjDniCD0gtm8
+t/Ro0URLeDUWcvb7rlkG2s03PZ+9Rr3N4TIX03tXpVc
+--- E5+/D4aK2ihKRR4YC5XOTmUbKgOqBR0Nk0gYvFOzXOI
+‰ÀÍyKF~djº˜r%¸Š'ÉÓÖPä&_-lŸ”ö&’o¥_ér¯¦r¢ÿß<C3BF>’0ï,­U7†nC·Te…÷[fˆ97ü•…šÙ˦“ÈC!D±E<C2B1>Wé*ÐLAô
x6¾#–¯
’sqôiéËÆäÏŸ“åk ,ùÝ“

web/content/hut/_index.md

@@ -13,115 +13,6 @@ which is available at `hut` or `xeon07`. It runs the following services:
 - Grafana: to plot the data in the web browser.
 - Slurmctld: to manage the SLURM nodes.
 - Gitlab runner: to run CI jobs from Gitlab.
-- Nix binary cache: to serve cached nix builds
 
 This node is prone to interruptions from all the services it runs, so it is not
 a good candidate for low noise executions.
-
-# Binary cache
-
-We provide a binary cache in `hut`, with the aim of avoiding unnecessary
-recompilation of packages.
-
-The cache should contain common packages from bscpkgs, but we don't provide
-any guarantee that of what will be available in the cache, or for how long.
-We recommend following the latest version of the `jungle` flake to avoid cache
-misses.
-
-## Usage
-
-### From NixOS
-
-In NixOS, we can add the cache through the `nix.settings` option, which will
-enable it for all builds in the system.
-
-```nix
-{ ... }: {
-  nix.settings = {
-    substituters = [ "https://jungle.bsc.es/cache" ];
-    trusted-public-keys = [ "jungle.bsc.es:pEc7MlAT0HEwLQYPtpkPLwRsGf80ZI26aj29zMw/HH0=" ];
-  };
-}
-```
-
-### Interactively
-
-The cache can also be specified in a per-command basis through the flags
-`--substituters` and `--trusted-public-keys`:
-
-```sh
-nix build --substituters "https://jungle.bsc.es/cache" --trusted-public-keys "jungle.bsc.es:pEc7MlAT0HEwLQYPtpkPLwRsGf80ZI26aj29zMw/HH0=" <...>
-```
-
-Note: you'll have to be a trusted user.
-
-### Nix configuration file (non-nixos)
-
-If using nix outside of NixOS, you'll have to update `/etc/nix/nix.conf`
-
-```
-# echo "substituters = https://jungle.bsc.es/cache" >> /etc/nix/nix.conf
-# echo "trusted-public-keys = jungle.bsc.es:pEc7MlAT0HEwLQYPtpkPLwRsGf80ZI26aj29zMw/HH0=" >> /etc/nix/nix.conf
-```
-
-### Hint in flakes
-
-By adding the configuration below to a `flake.nix`, when someone uses the flake,
-`nix` will interactively ask to trust and use the provided binary cache:
-
-```nix
-{
-  nixConfig = {
-    extra-substituters = [
-      "https://jungle.bsc.es/cache"
-    ];
-    extra-trusted-public-keys = [
-      "jungle.bsc.es:pEc7MlAT0HEwLQYPtpkPLwRsGf80ZI26aj29zMw/HH0="
-    ];
-  };
-  outputs = { ... }: {
-    ...
-  };
-}
-```
-
-### Querying the cache
-
-Check if the cache is available:
-```sh
-$ curl https://jungle.bsc.es/cache/nix-cache-info
-StoreDir: /nix/store
-WantMassQuery: 1
-Priority: 30
-```
-
-Prevent nix from building locally:
-```bash
-nix build --max-jobs 0 <...>
-```
-
-Check if a package is in cache:
-```bash
-# Do a raw eval on the <package>.outPath (this should not build the package)
-$ nix eval --raw jungle#openmp.outPath
-/nix/store/dwnn4dgm1m4184l4xbi0qfrprji9wjmi-openmp-2024.11
-# Take the hash (everything from / to - in the basename) and curl <hash>.narinfo
-# if it exists in the cache, it will return HTTP 200 and some information
-# if not, it will return 404
-$ curl https://jungle.bsc.es/cache/dwnn4dgm1m4184l4xbi0qfrprji9wjmi.narinfo
-StorePath: /nix/store/dwnn4dgm1m4184l4xbi0qfrprji9wjmi-openmp-2024.11
-URL: nar/dwnn4dgm1m4184l4xbi0qfrprji9wjmi-17imkdfqzmnb013d14dx234bx17bnvws8baf3ii1xra5qi2y1wiz.nar
-Compression: none
-NarHash: sha256:17imkdfqzmnb013d14dx234bx17bnvws8baf3ii1xra5qi2y1wiz
-NarSize: 1519328
-References: 4gk773fqcsv4fh2rfkhs9bgfih86fdq8-gcc-13.3.0-lib nqb2ns2d1lahnd5ncwmn6k84qfd7vx2k-glibc-2.40-36
-Deriver: vcn0x8hikc4mvxdkvrdxp61bwa5r7lr6-openmp-2024.11.drv
-Sig: jungle.bsc.es:GDTOUEs1jl91wpLbb+gcKsAZjpKdARO9j5IQqb3micBeqzX2M/NDtKvgCS1YyiudOUdcjwa3j+hyzV2njokcCA==
-# In oneline:
-$ curl "https://jungle.bsc.es/cache/$(nix eval --raw jungle#<package>.outPath | cut -d '/' -f4 | cut -d '-' -f1).narinfo"
-```
-
-#### References
-
-- https://nix.dev/guides/recipes/add-binary-cache.html
-- https://nixos.wiki/wiki/Binary_Cache