forked from rarias/bscpkgs
169 lines
7.0 KiB
R
169 lines
7.0 KiB
R
library(ggplot2)
|
|
library(dplyr, warn.conflicts = FALSE)
|
|
library(scales)
|
|
library(jsonlite)
|
|
library(viridis, warn.conflicts = FALSE)
|
|
|
|
# Load the arguments (argv)
|
|
args = commandArgs(trailingOnly=TRUE)
|
|
if (length(args)>0) { input_file = args[1] } else { input_file = "input" }
|
|
|
|
dfNuma = jsonlite::stream_in(file(input_file), verbose=FALSE) %>%
|
|
jsonlite::flatten() %>%
|
|
select(config.blocksize, config.gitBranch, config.socketAtt, config.useNumact, unit, time) %>%
|
|
rename(blocksize=config.blocksize, branch=config.gitBranch, attachment=config.socketAtt, usenuma=config.useNumact) %>%
|
|
|
|
mutate(blocksize = as.factor(blocksize)) %>%
|
|
mutate(branch = as.factor(branch)) %>%
|
|
mutate(attachment = as.factor(attachment)) %>%
|
|
mutate(usenuma = as.factor(usenuma)) %>%
|
|
mutate(unit = as.factor(unit)) %>%
|
|
|
|
group_by(unit) %>%
|
|
|
|
mutate(median.time = median(time)) %>%
|
|
mutate(normalized.time = time / median.time - 1) %>%
|
|
mutate(log.median.time = log(median.time)) %>%
|
|
|
|
filter(usenuma == TRUE) %>%
|
|
|
|
ungroup()
|
|
|
|
dfNonuma = jsonlite::stream_in(file(input_file), verbose=FALSE) %>%
|
|
jsonlite::flatten() %>%
|
|
select(config.blocksize, config.gitBranch, config.socketAtt, config.useNumact, unit, time) %>%
|
|
rename(blocksize=config.blocksize, branch=config.gitBranch, attachment=config.socketAtt, usenuma=config.useNumact) %>%
|
|
|
|
mutate(blocksize = as.factor(blocksize)) %>%
|
|
mutate(branch = as.factor(branch)) %>%
|
|
mutate(attachment = as.factor(attachment)) %>%
|
|
mutate(usenuma = as.factor(usenuma)) %>%
|
|
mutate(unit = as.factor(unit)) %>%
|
|
|
|
group_by(unit) %>%
|
|
|
|
mutate(median.time = median(time)) %>%
|
|
mutate(normalized.time = time / median.time - 1) %>%
|
|
mutate(log.median.time = log(median.time)) %>%
|
|
|
|
filter(usenuma == FALSE) %>%
|
|
|
|
ungroup()
|
|
|
|
dpi = 300
|
|
h = 5
|
|
w = 8
|
|
|
|
|
|
# ---------------------------------------------------------------------
|
|
|
|
p = ggplot(dfNuma, aes(x=blocksize, y=median.time, color=attachment)) +
|
|
geom_point() +
|
|
geom_line(aes(group=attachment)) +
|
|
theme_bw() +
|
|
labs(x="Blocksize", y="Median time (s)", title="NBody Granularity (tampi+send+oss+task | numactl ON | 4 Nodes): Median Time",
|
|
subtitle=input_file, color="Rank Attachment") +
|
|
theme(plot.subtitle=element_text(size=5)) +
|
|
theme(legend.position="bottom") +
|
|
scale_color_manual(labels = c("RanksPerNode", "RanksPerSocket"), values=c("blue", "red"))
|
|
|
|
ggsave("median-numactl.time.png", plot=p, width=w, height=h, dpi=dpi)
|
|
ggsave("median-numactl.time.pdf", plot=p, width=w, height=h, dpi=dpi)
|
|
|
|
p = ggplot(dfNonuma, aes(x=blocksize, y=median.time, color=attachment)) +
|
|
geom_point() +
|
|
geom_line(aes(group=attachment)) +
|
|
theme_bw() +
|
|
labs(x="Blocksize", y="Median time (s)", title="NBody Granularity (tampi+send+oss+task | numactl OFF | 4 Nodes): Median Time",
|
|
subtitle=input_file, color="Rank Attachment") +
|
|
theme(plot.subtitle=element_text(size=5)) +
|
|
theme(legend.position="bottom") +
|
|
scale_color_manual(labels = c("RanksPerNode", "RanksPerSocket"), values=c("blue", "red"))
|
|
|
|
ggsave("median.time.png", plot=p, width=w, height=h, dpi=dpi)
|
|
ggsave("median.time.pdf", plot=p, width=w, height=h, dpi=dpi)
|
|
# ---------------------------------------------------------------------
|
|
|
|
p = ggplot(dfNuma, aes(x=blocksize, y=normalized.time, color=attachment)) +
|
|
geom_boxplot() +
|
|
geom_hline(yintercept=c(-0.01, 0.01), linetype="dashed", color="red") +
|
|
facet_wrap(~ attachment) +
|
|
theme_bw() +
|
|
labs(x="Blocksize", y="Normalized Time", title="NBody Granularity (tampi+send+oss+task | numactl ON | 4 Nodes): Normalized Time",
|
|
subtitle=input_file, color="Rank Attachment") +
|
|
theme(plot.subtitle=element_text(size=5)) +
|
|
theme(legend.position="bottom") +
|
|
scale_color_manual(labels = c("RanksPerNode", "RanksPerSocket"), values=c("blue", "red"))
|
|
|
|
ggsave("normalized-numactl.time.png", plot=p, width=w, height=h, dpi=dpi)
|
|
ggsave("normalized-numactl.time.pdf", plot=p, width=w, height=h, dpi=dpi)
|
|
|
|
p = ggplot(dfNonuma, aes(x=blocksize, y=normalized.time, color=attachment)) +
|
|
geom_boxplot() +
|
|
geom_hline(yintercept=c(-0.01, 0.01), linetype="dashed", color="red") +
|
|
facet_wrap(~ attachment) +
|
|
theme_bw() +
|
|
labs(x="Blocksize", y="Normalized Time", title="NBody Granularity (tampi+send+oss+task | 4 Nodes): Normalized Time",
|
|
subtitle=input_file, color="Rank Attachment") +
|
|
theme(plot.subtitle=element_text(size=5)) +
|
|
theme(legend.position="bottom") +
|
|
scale_color_manual(labels = c("RanksPerNode", "RanksPerSocket"), values=c("blue", "red"))
|
|
|
|
ggsave("normalized.time.png", plot=p, width=w, height=h, dpi=dpi)
|
|
ggsave("normalized.time.pdf", plot=p, width=w, height=h, dpi=dpi)
|
|
# ---------------------------------------------------------------------
|
|
|
|
p = ggplot(dfNuma, aes(x=blocksize, y=time, color=attachment)) +
|
|
geom_point(shape=21, size=3) +
|
|
theme_bw() +
|
|
labs(x="Blocksize", y="Time (s)", title="NBody Granularity (tampi+send+oss+task | numactl ON | 4 Nodes): Time",
|
|
subtitle=input_file, color="Rank Attachment") +
|
|
theme(plot.subtitle=element_text(size=5)) +
|
|
theme(legend.position="bottom") +
|
|
scale_color_manual(labels = c("RanksPerNode", "RanksPerSocket"), values=c("blue", "red"))
|
|
|
|
ggsave("time-numactl.png", plot=p, width=w, height=h, dpi=dpi)
|
|
ggsave("time-numactl.pdf", plot=p, width=w, height=h, dpi=dpi)
|
|
|
|
p = ggplot(dfNonuma, aes(x=blocksize, y=time, color=attachment)) +
|
|
geom_point(shape=21, size=3) +
|
|
theme_bw() +
|
|
labs(x="Blocksize", y="Time (s)", title="NBody Granularity (tampi+send+oss+task | 4 Nodes): Time",
|
|
subtitle=input_file, color="Rank Attachment") +
|
|
theme(plot.subtitle=element_text(size=5)) +
|
|
theme(legend.position="bottom") +
|
|
scale_color_manual(labels = c("RanksPerNode", "RanksPerSocket"), values=c("blue", "red"))
|
|
|
|
|
|
ggsave("time.png", plot=p, width=w, height=h, dpi=dpi)
|
|
ggsave("time.pdf", plot=p, width=w, height=h, dpi=dpi)
|
|
# ---------------------------------------------------------------------
|
|
|
|
p = ggplot(dfNuma, aes(x=blocksize, y=attachment, fill=median.time)) +
|
|
geom_raster() +
|
|
scale_fill_viridis(option="plasma") +
|
|
coord_fixed() +
|
|
theme_bw() +
|
|
labs(x="Blocksize", y="Attachment", title="NBody Granularity (tampi+send+oss+task | numactl ON | 4 Nodes): Time",
|
|
subtitle=input_file, color = "Rank Attachment") +
|
|
theme(plot.subtitle=element_text(size=5)) +
|
|
theme(legend.position="bottom") +
|
|
scale_color_manual(labels = c("RanksPerNode", "RanksPerSocket"), values=c("blue", "red"))
|
|
|
|
ggsave("time-numactl.heatmap.png", plot=p, width=w, height=h, dpi=dpi)
|
|
ggsave("time-numactl.heatmap.pdf", plot=p, width=w, height=h, dpi=dpi)
|
|
|
|
p = ggplot(dfNonuma, aes(x=blocksize, y=attachment, fill=median.time)) +
|
|
geom_raster() +
|
|
scale_fill_viridis(option="plasma") +
|
|
coord_fixed() +
|
|
theme_bw() +
|
|
labs(x="Blocksize", y="Attachment", title="NBody Granularity (tampi+send+oss+task | 4 Nodes): Time",
|
|
subtitle=input_file, color = "Rank Attachment") +
|
|
theme(plot.subtitle=element_text(size=5)) +
|
|
theme(legend.position="bottom") +
|
|
scale_color_manual(labels = c("RanksPerNode", "RanksPerSocket"), values=c("blue", "red"))
|
|
|
|
ggsave("time.heatmap.png", plot=p, width=w, height=h, dpi=dpi)
|
|
ggsave("time.heatmap.pdf", plot=p, width=w, height=h, dpi=dpi)
|