targetTarget might be missing when native build

Reviewed-by: Rodrigo Arias Mallo <rodrigo.arias@bsc.es>
Tested-by: Rodrigo Arias Mallo <rodrigo.arias@bsc.es>

default.nix

@@ -1,11 +1,19 @@
 let
   bscOverlay = import ./overlay.nix;
 
-  # Pin the nixpkgs
-  nixpkgsPath = import ./nixpkgs.nix;
-
-  pkgs = import nixpkgsPath {
-    overlays = [ bscOverlay ];
+  # read flake.lock and determine revision from there
+  lock = builtins.fromJSON (builtins.readFile ./flake.lock);
+  inherit (lock.nodes.nixpkgs.locked) rev narHash;
+  fetchedNixpkgs = builtins.fetchTarball {
+    url = "https://github.com/NixOS/nixpkgs/archive/${rev}.tar.gz";
+    sha256 = narHash;
   };
-
-in pkgs
+in
+{ overlays ? [ ]
+, nixpkgs ? fetchedNixpkgs
+, ...
+}@attrs:
+import nixpkgs (
+  (builtins.removeAttrs attrs [ "overlays" "nixpkgs" ]) //
+  { overlays = [ bscOverlay ] ++ overlays; }
+)

flake.lock

@@ -2,10 +2,10 @@
   "nodes": {
     "nixpkgs": {
       "locked": {
-        "lastModified": 1736867362,
-        "narHash": "sha256-i/UJ5I7HoqmFMwZEH6vAvBxOrjjOJNU739lnZnhUln8=",
-        "path": "/nix/store/2csx2kkb2hxyxhhmg2xs9jfyypikwwk6-source",
-        "rev": "9c6b49aeac36e2ed73a8c472f1546f6d9cf1addc",
+        "lastModified": 1752436162,
+        "narHash": "sha256-Kt1UIPi7kZqkSc5HVj6UY5YLHHEzPBkgpNUByuyxtlw=",
+        "path": "/nix/store/zk8v61cpk1wprp9ld5ayc1g5fq4pdkwv-source",
+        "rev": "dfcd5b901dbab46c9c6e80b265648481aafb01f8",
         "type": "path"
       },
       "original": {

nixpkgs.nix

@@ -1,9 +0,0 @@
-let
-  commit = "e4ad989506ec7d71f7302cc3067abd82730a4beb";
-in builtins.fetchTarball {
-    # Descriptive name to make the store path easier to identify
-    name = "nixpkgs-${commit}";
-    url = "https://github.com/nixos/nixpkgs/archive/${commit}.tar.gz";
-    # Hash obtained using `nix-prefetch-url --unpack <url>`
-    sha256 = "sha256-de9KYi8rSJpqvBfNwscWdalIJXPo8NjdIZcEJum1mH0=";
-}

overlay.nix

@@ -13,15 +13,16 @@ let
     bench6 = callPackage ./pkgs/bench6/default.nix { };
     bigotes = callPackage ./pkgs/bigotes/default.nix { };
     clangOmpss2 = callPackage ./pkgs/llvm-ompss2/default.nix { };
-    clangOmpss2Nanos6 = callPackage ./pkgs/llvm-ompss2/default.nix { ompss2rt = final.nanos6; };
-    clangOmpss2Nodes = callPackage ./pkgs/llvm-ompss2/default.nix { ompss2rt = final.nodes; openmp = final.openmp; };
-    clangOmpss2NodesOmpv = callPackage ./pkgs/llvm-ompss2/default.nix { ompss2rt = final.nodes; openmp = final.openmpv; };
+    clangOmpss2Nanos6 = callPackage ./pkgs/llvm-ompss2/default.nix { useNanos6 = true; };
+    clangOmpss2Nodes = callPackage ./pkgs/llvm-ompss2/default.nix { useNodes = true; useOpenmp = true; };
+    clangOmpss2NodesOmpv = callPackage ./pkgs/llvm-ompss2/default.nix { useNodes = true; useOpenmpV = true; };
     clangOmpss2Unwrapped = callPackage ./pkgs/llvm-ompss2/clang.nix { };
+
     #extrae = callPackage ./pkgs/extrae/default.nix { }; # Broken and outdated
-    gpi-2 = callPackage ./pkgs/gpi-2/default.nix { };
+    #gpi-2 = callPackage ./pkgs/gpi-2/default.nix { }; # Broken: https://jungle.bsc.es/git/rarias/bscpkgs/issues/7
     intelPackages_2023 = callPackage ./pkgs/intel-oneapi/2023.nix { };
     jemallocNanos6 = callPackage ./pkgs/nanos6/jemalloc.nix { };
-    #lmbench = callPackage ./pkgs/lmbench/default.nix { }; # Broken
+    lmbench = callPackage ./pkgs/lmbench/default.nix { };
     mcxx = callPackage ./pkgs/mcxx/default.nix { };
     nanos6 = callPackage ./pkgs/nanos6/default.nix { };
     nanos6Debug = final.nanos6.override { enableDebug = true; };
@@ -40,11 +41,11 @@ let
     #pscom = callPackage ./pkgs/parastation/pscom.nix { }; # Unmaintaned
     #psmpi = callPackage ./pkgs/parastation/psmpi.nix { }; # Unmaintaned
     sonar = callPackage ./pkgs/sonar/default.nix { };
-    stdenvClangOmpss2 = final.stdenv.override { cc = final.clangOmpss2; allowedRequisites = null; };
-    stdenvClangOmpss2Nanos6 = final.stdenv.override { cc = final.clangOmpss2Nanos6; allowedRequisites = null; };
-    stdenvClangOmpss2Nodes = final.stdenv.override { cc = final.clangOmpss2Nodes; allowedRequisites = null; };
-    stdenvClangOmpss2NodesOmpv = final.stdenv.override { cc = final.clangOmpss2NodesOmpv; allowedRequisites = null; };
-    tagaspi = callPackage ./pkgs/tagaspi/default.nix { };
+    stdenvClangOmpss2 = final.stdenv.override { cc = final.buildPackages.clangOmpss2; allowedRequisites = null; };
+    stdenvClangOmpss2Nanos6 = final.stdenv.override { cc = final.buildPackages.clangOmpss2Nanos6; allowedRequisites = null; };
+    stdenvClangOmpss2Nodes = final.stdenv.override { cc = final.buildPackages.clangOmpss2Nodes; allowedRequisites = null; };
+    stdenvClangOmpss2NodesOmpv = final.stdenv.override { cc = final.buildPackages.clangOmpss2NodesOmpv; allowedRequisites = null; };
+    #tagaspi = callPackage ./pkgs/tagaspi/default.nix { }; # Broken due gpi-2
     tampi = callPackage ./pkgs/tampi/default.nix { };
     wxparaver = callPackage ./pkgs/paraver/default.nix { };
   };

pkgs/bench6/default.nix

@@ -1,14 +1,20 @@
 {
   stdenv
+, bigotes
 , cmake
 , clangOmpss2
+, openmp
+, openmpv
 , nanos6
 , nodes
+, nosv
 , mpi
 , tampi
+, openblas
+, ovni
 , gitBranch ? "master"
 , gitURL ? "ssh://git@bscpm04.bsc.es/rarias/bench6.git"
-, gitCommit ? "1e6ce2aa8ad7b4eef38df1581d7ec48a8815f85d"
+, gitCommit ? "bf29a53113737c3aa74d2fe3d55f59868faea7b4"
 }:
 
 stdenv.mkDerivation rec {
@@ -21,9 +27,28 @@ stdenv.mkDerivation rec {
     rev = gitCommit;
   };
 
-  buildInputs = [ cmake clangOmpss2 nanos6 nodes mpi tampi ];
+  buildInputs = [
+    bigotes
+    cmake
+    clangOmpss2
+    openmp
+    openmpv
+    nanos6
+    nodes
+    nosv
+    mpi
+    tampi
+    openblas
+    openblas.dev
+    ovni
+  ];
+
+  env = {
+    NANOS6_HOME = nanos6;
+    NODES_HOME = nodes;
+    NOSV_HOME = nosv;
+  };
 
-  enableParallelBuilding = false;
   cmakeFlags = [
     "-DCMAKE_C_COMPILER=clang"
     "-DCMAKE_CXX_COMPILER=clang++"

pkgs/intel-oneapi/2023.nix

@@ -1,6 +1,5 @@
 { stdenv
 , fetchurl
-, ncurses
 , lib
 , dpkg
 , rsync
@@ -10,12 +9,9 @@
 , hwloc
 , zlib
 , autoPatchelfHook
-, symlinkJoin
 , libfabric
-, gcc
-, gcc7
+, gcc13
 , wrapCCWith
-, linuxHeaders
 }:
 
 # The distribution of intel packages is a mess. We are doing the installation
@@ -30,6 +26,8 @@
 
 let
 
+  gcc = gcc13;
+
   v = {
     hpckit   = "2023.1.0";
     compiler = "2023.1.0";
@@ -314,6 +312,7 @@ let
       "intel-oneapi-compiler-dpcpp-cpp-and-cpp-classic-runtime-${version}"
       "intel-oneapi-compiler-dpcpp-cpp-classic-fortran-shared-runtime-${version}"
     ];
+    dontCheckForBrokenSymlinks = true;
     # From https://aur.archlinux.org/packages/intel-oneapi-compiler:
     # - intel-oneapi-compiler-cpp-eclipse-cfg-2023.0.0-25370_all.deb
     # + intel-oneapi-compiler-dpcpp-cpp-2023.0.0-2023.0.0-25370_amd64.deb
@@ -399,7 +398,9 @@ let
         echo "-L${cc}/lib" >> $out/nix-support/cc-ldflags
 
         # Need the gcc in the path
-        echo 'export "PATH=${mygcc}/bin:$PATH"' >> $out/nix-support/cc-wrapper-hook
+        # FIXME: We should find a better way to modify the PATH instead of using
+        # this ugly hack. See https://jungle.bsc.es/git/rarias/bscpkgs/issues/9
+        echo 'path_backup="${mygcc}/bin:$path_backup"' >> $out/nix-support/cc-wrapper-hook
 
         # Disable hardening by default
         echo "" > $out/nix-support/add-hardening.sh

pkgs/llvm-ompss2/clang.nix

@@ -1,5 +1,6 @@
 {
-  llvmPackages_latest
+  stdenv
+, llvmPackages_latest
 , lib
 , fetchFromGitHub
 , cmake
@@ -11,24 +12,26 @@
 , libffi
 , zlib
 , pkg-config
-, gcc # needed to set the rpath of libstdc++ for clang-tblgen
 , enableDebug ? false
 , useGit ? false
 , gitUrl ? "ssh://git@bscpm04.bsc.es/llvm-ompss/llvm-mono.git"
 , gitBranch ? "master"
-, gitCommit ? "8c0d267c04d7fc3fb923078f510fcd5f4719a6cc"
+, gitCommit ? "880e2341c56bad1dc14e8c369fb3356bec19018e"
 }:
 
 let
-  stdenv = llvmPackages_latest.stdenv;
+  llvmPackages = llvmPackages_latest;
+  llvmStdenv = llvmPackages.stdenv;
+  # needed to set the rpath of libstdc++ for clang-tblgen
+  gcc = stdenv.cc;
 
   release = rec {
-    version = "2024.11";
+    version = "2025.06";
     src = fetchFromGitHub {
       owner = "bsc-pm";
       repo = "llvm";
       rev = "refs/tags/github-release-${version}";
-      hash = "sha256-pF0qa987nLkIJPUrXh1srzBkLPfb31skIegD0bl34Kg=";
+      hash = "sha256-ww9PpRmtz/M9IyLiZ8rAehx2UW4VpQt+svf4XfKBzKo=";
     };
   };
 
@@ -43,7 +46,7 @@ let
 
   source = if (useGit) then git else release;
 
-in stdenv.mkDerivation rec {
+in llvmStdenv.mkDerivation rec {
   pname = "clang-ompss2";
   inherit (source) src version;
 
@@ -57,20 +60,23 @@ in stdenv.mkDerivation rec {
 
   isClangWithOmpss = true;
 
-  nativeBuildInputs = [ zlib ];
+  nativeBuildInputs = [
+    zlib
+    gcc.cc.lib # Required for libstdc++.so.6
+    cmake
+    python3
+    llvmPackages.lld
+  ];
 
   buildInputs = [
     which
     bash
-    python3
     perl
-    cmake
-    llvmPackages_latest.lld
+    llvmPackages.lld
     elfutils
     libffi
     pkg-config
     zlib
-    gcc.cc.lib # Required for libstdc++.so.6
   ];
 
   # Error with -D_FORTIFY_SOURCE=2, see https://bugs.gentoo.org/636604:
@@ -86,6 +92,7 @@ in stdenv.mkDerivation rec {
 
   dontUseCmakeBuildDir = true;
 
+
   # Fix the host triple, as it has changed in a newer config.guess:
   # https://git.savannah.gnu.org/gitweb/?p=config.git;a=commitdiff;h=ca9bfb8cc75a2be1819d89c664a867785c96c9ba
   preConfigure = ''
@@ -93,8 +100,13 @@ in stdenv.mkDerivation rec {
     cd build
     cmakeDir="../llvm"
     cmakeFlagsArray=(
-      "-DLLVM_HOST_TRIPLE=${stdenv.targetPlatform.config}"
+      "-DLLVM_HOST_TRIPLE=${llvmStdenv.targetPlatform.config}"
+    '' + (if "${llvmStdenv.targetPlatform.config}" == "riscv64-unknown-linux-gnu" then ''
+      "-DLLVM_DEFAULT_TARGET_TRIPLE=riscv64-unknown-linux-gnu"
+      "-DLLVM_TARGETS_TO_BUILD=RISCV"
+    '' else ''
       "-DLLVM_TARGETS_TO_BUILD=host"
+    '') + ''
       "-DLLVM_BUILD_LLVM_DYLIB=ON"
       "-DLLVM_LINK_LLVM_DYLIB=ON"
       # Required to run clang-ast-dump and clang-tblgen during build
@@ -103,7 +115,8 @@ in stdenv.mkDerivation rec {
       "-DCMAKE_CXX_FLAGS_DEBUG=-g -ggnu-pubnames"
       "-DCMAKE_EXE_LINKER_FLAGS_DEBUG=-Wl,--gdb-index"
       "-DLLVM_LIT_ARGS=-sv --xunit-xml-output=xunit.xml"
-      "-DLLVM_ENABLE_PROJECTS=clang;compiler-rt;lld"
+      "-DLLVM_ENABLE_PROJECTS=clang;lld"
+      #"-DLLVM_ENABLE_PROJECTS=clang;compiler-rt;lld"
       "-DLLVM_ENABLE_ASSERTIONS=ON"
       "-DLLVM_INSTALL_TOOLCHAIN_ONLY=ON"
       "-DCMAKE_INSTALL_BINDIR=bin"
@@ -113,8 +126,8 @@ in stdenv.mkDerivation rec {
       # install
       "-DCMAKE_INSTALL_RPATH_USE_LINK_PATH=ON"
       "-DCMAKE_INSTALL_RPATH=${zlib}/lib:${gcc.cc.lib}/lib"
-      "-DLLVM_APPEND_VC_REV=ON"
-      "-DLLVM_FORCE_VC_REVISION=${source.version}"
+      #"-DLLVM_APPEND_VC_REV=ON"
+      #"-DLLVM_FORCE_VC_REVISION=${source.version}"
     )
   '';
 

pkgs/llvm-ompss2/default.nix

@@ -3,23 +3,43 @@
 , lib
 , gcc
 , clangOmpss2Unwrapped
-, openmp ? null
+
+, openmp
+, useOpenmp  ? false
+, openmpv
+, useOpenmpV ? false
+, nanos6
+, useNanos6 ? false
+, nodes
+, useNodes ? false
+
 , wrapCCWith
 , llvmPackages_latest
-, ompss2rt ? null
 }:
 
+with lib;
+
 let
-  usingNodesAndOmpv = (openmp.pname == "openmp-v" && ompss2rt.pname == "nodes");
-  sameNosv = openmp.nosv == ompss2rt.nosv;
+  getSplice = target: pkg: if pkg ? "__spliced" && pkg.__spliced ? target then pkg.__spliced."${target}" else pkg;
+  #getSpliceTargetTarget = pkg: if pkg ? "__spliced" && pkg.__spliced ? "targetTarget" then pkg.__spliced.targetTarget else pkg;
+  getSpliceTargetTarget = getSplice "targetTarget";
+  omp = if useOpenmp then openmp else if useOpenmpV then openmpv else null;
+  ompss2rtUnspliced = if useNanos6 then nanos6 else if useNodes then nodes else null;
+  ompss2rt = getSpliceTargetTarget ompss2rtUnspliced;
+  usingNodesAndOmpv = (omp.pname == "openmp-v" && ompss2rt.pname == "nodes");
+  sameNosvUnspliced = omp.nosv == ompss2rtUnspliced.nosv;
+  sameNosvSpliced = (getSpliceTargetTarget omp.nosv) == ompss2rt.nosv;
 in
 
-assert lib.assertMsg (usingNodesAndOmpv -> sameNosv) "OpenMP-V and NODES must share the same nOS-V";
+assert assertMsg (usingNodesAndOmpv -> sameNosvUnspliced) "OpenMP-V and NODES must share the same nOS-V before splice";
+assert assertMsg (usingNodesAndOmpv -> sameNosvSpliced) "OpenMP-V and NODES must share the same nOS-V after splice";
+assert assertMsg (useOpenmp -> !useOpenmpV) "Either OpenMP or OpenMP-V may be enabled, but not both";
+assert assertMsg (useNanos6 -> !useNodes) "Either Nanos6 or NODES may be enabled, but not both";
 
 let
   homevar = if ompss2rt.pname == "nanos6" then "NANOS6_HOME" else "NODES_HOME";
   rtname  = if ompss2rt.pname == "nanos6" then "libnanos6" else "libnodes";
-  ompname = if openmp.pname == "openmp-v" then  "libompv" else "libomp";
+  ompname = if omp.pname == "openmp-v" then  "libompv" else "libomp";
 
 
   # We need to replace the lld linker from bintools with our linker just built,
@@ -34,14 +54,16 @@ let
   targetConfig = stdenv.targetPlatform.config;
   inherit gcc;
   cc = clangOmpss2Unwrapped;
-in wrapCCWith {
+  gccVersion = with versions; let v = gcc.version; in concatStringsSep "." [(major v) (minor v) (patch v)];
+in (wrapCCWith {
   inherit cc bintools;
   # extraPackages adds packages to depsTargetTargetPropagated
-  extraPackages = lib.optional (openmp != null) openmp;
+  extraPackages = optional (omp != null) omp;
   extraBuildCommands = ''
     echo "-target ${targetConfig}" >> $out/nix-support/cc-cflags
-    echo "-B${gcc.cc}/lib/gcc/${targetConfig}/${gcc.version}" >> $out/nix-support/cc-cflags
-    echo "-L${gcc.cc}/lib/gcc/${targetConfig}/${gcc.version}" >> $out/nix-support/cc-ldflags
+    #echo "-fuse-ld=lld" >> $out/nix-support/cc-cflags
+    echo "-B${gcc.cc}/lib/gcc/${targetConfig}/${gccVersion}" >> $out/nix-support/cc-cflags
+    echo "-L${gcc.cc}/lib/gcc/${targetConfig}/${gccVersion}" >> $out/nix-support/cc-ldflags
     echo "-L${gcc.cc.lib}/lib" >> $out/nix-support/cc-ldflags
 
     for dir in ${gcc.cc}/include/c++/*; do
@@ -53,15 +75,17 @@ in wrapCCWith {
 
     echo "--gcc-toolchain=${gcc}" >> $out/nix-support/cc-cflags
 
-    wrap clang++  $wrapper $ccPath/clang++
+    wrap ${targetConfig}clang++  $wrapper $ccPath/clang++
+    wrap ${targetConfig}clang    $wrapper $ccPath/clang
 
-  '' + lib.optionalString (openmp != null) ''
+  '' + optionalString (omp != null) ''
     echo "export OPENMP_RUNTIME=${ompname}" >> $out/nix-support/cc-wrapper-hook
-  '' + lib.optionalString (ompss2rt != null) ''
+  '' + optionalString (ompss2rt != null) ''
     echo "export OMPSS2_RUNTIME=${rtname}" >> $out/nix-support/cc-wrapper-hook
     echo "export ${homevar}=${ompss2rt}"   >> $out/nix-support/cc-wrapper-hook
-  '' + lib.optionalString (ompss2rt != null && ompss2rt.pname == "nodes") ''
-    echo "export NOSV_HOME=${ompss2rt.nosv}" >> $out/nix-support/cc-wrapper-hook
+  '' + optionalString (ompss2rt != null && ompss2rt.pname == "nodes") ''
+    echo "export NOSV_HOME=${ompss2rt}" >> $out/nix-support/cc-wrapper-hook
   '';
-}
+}) // { inherit ompss2rt; }
+
 

pkgs/llvm-ompss2/openmp.nix

@@ -39,6 +39,9 @@ stdenv.mkDerivation rec {
     perl
     pkg-config
     python3
+  ];
+
+  buildInputs = [
   ] ++ lib.optionals enableNosv [
     nosv
   ] ++ lib.optionals enableOvni [
@@ -68,6 +71,7 @@ stdenv.mkDerivation rec {
     rm -f $out/lib/libiomp*
   '' + lib.optionalString enableNosv ''
     rm -f $out/lib/libomp.*
+    rm -f $out/libllvmrt/libomp.*
   '';
 
   passthru = {

pkgs/lmbench/default.nix

@@ -1,35 +1,41 @@
 {
   lib,
   stdenv,
+  libtirpc,
   fetchFromGitHub
 }:
 
 stdenv.mkDerivation rec {
   pname = "lmbench";
-  version = "701c6c35";
+  version = "941a0dcc";
 
   # We use the intel repo as they have fixed some problems
   src = fetchFromGitHub {
     owner = "intel";
     repo = pname;
-    rev = "701c6c35b0270d4634fb1dc5272721340322b8ed";
-    sha256 = "0sf6zk03knkardsfd6qx7drpm56nhg53n885cylkggk83r38idyr";
+    rev = "941a0dcc0e7bdd9bb0dee05d7f620e77da8c43af";
+    sha256 = "sha256-SzwplRBO3V0R3m3p15n71ivYBMGoLsajFK2TapYxdqk=";
   };
 
-  postUnpack = ''
-    export sourceRoot="$sourceRoot/src"
-  '';
-
   postPatch = ''
     sed -i "s@/bin/rm@rm@g" $(find . -name Makefile)
   '';
 
+  buildInputs = [ libtirpc ];
+  patches = [ ./fix-install.patch ./gcc-14.patch ];
+
   hardeningDisable = [ "all" ];
 
   enableParallelBuilding = false;
 
   preBuild = ''
-    makeFlagsArray+=(BASE=$out)
+    makeFlagsArray+=(
+      -C src
+      BASE=$out
+      CFLAGS=-Wno-implicit-int
+      CPPFLAGS=-I${libtirpc.dev}/include/tirpc
+      LDFLAGS=-ltirpc
+    )
   '';
 
   meta = {

pkgs/lmbench/fix-install.patch

@@ -0,0 +1,10 @@
+--- a/src/Makefile
++++ b/src/Makefile
+@@ -144,6 +144,7 @@ install-target:
+ 	if [ ! -d $(BASE)/include ]; then mkdir $(BASE)/include; fi
+ 	if [ ! -d $(BASE)/lib ]; then mkdir $(BASE)/lib; fi
+ 	cp $(EXES) $(BASE)/bin
++	cp $(OPT_EXES) $(BASE)/bin
+ 	cp $(INCS) $(BASE)/include
+ 	cp $O/lmbench.a $(BASE)/lib/libmbench.a
+ 	cd ../doc; env MAKEFLAGS="$(MAKEFLAGS)" make CC="${CC}" OS="${OS}" BASE="$(BASE)" install

pkgs/lmbench/gcc-14.patch

@@ -0,0 +1,77 @@
+From a3c6e7d303cd8368e8d4e35be7cbc1997e801257 Mon Sep 17 00:00:00 2001
+From: Rodrigo Arias Mallo <rodrigo.arias@bsc.es>
+Date: Mon, 21 Jul 2025 17:38:58 +0200
+Subject: [PATCH] Misc fixes to build with gcc 14
+
+---
+ src/bench.h      | 2 ++
+ src/lat_select.c | 2 +-
+ src/lib_debug.c  | 1 +
+ src/lib_sched.c  | 2 +-
+ src/lib_timing.c | 2 +-
+ 5 files changed, 6 insertions(+), 3 deletions(-)
+
+diff --git a/src/bench.h b/src/bench.h
+index 8166408..4da9079 100644
+--- a/src/bench.h
++++ b/src/bench.h
+@@ -320,4 +320,6 @@ extern int handle_scheduler(int childno, int benchproc, int nbenchprocs);
+ extern char *rpc_xact_1();
+ extern char *client_rpc_xact_1();
+ 
++void lmbench_usage(int argc, char *argv[], char* usage);
++
+ #endif /* _BENCH_H */
+diff --git a/src/lat_select.c b/src/lat_select.c
+index 583b505..39df369 100644
+--- a/src/lat_select.c
++++ b/src/lat_select.c
+@@ -164,7 +164,7 @@ doit(iter_t iterations, void * cookie)
+ 	state_t * 	state = (state_t *)cookie;
+ 	fd_set		nosave;
+ 	static struct timeval tv;
+-	static count = 0;
++	static int count = 0;
+ 	
+ 	tv.tv_sec = 0;
+ 	tv.tv_usec = 0;
+diff --git a/src/lib_debug.c b/src/lib_debug.c
+index e8347dd..cf65312 100644
+--- a/src/lib_debug.c
++++ b/src/lib_debug.c
+@@ -1,5 +1,6 @@
+ #include "bench.h"
+ #include "lib_debug.h"
++#include <math.h>
+ 
+ /*
+  * return micro-seconds / iteration at the the fraction point.
+diff --git a/src/lib_sched.c b/src/lib_sched.c
+index aa83ae0..4f16bbf 100644
+--- a/src/lib_sched.c
++++ b/src/lib_sched.c
+@@ -91,7 +91,7 @@ handle_scheduler(int childno, int benchproc, int nbenchprocs)
+ 			     childno * (nbenchprocs + 1) + benchproc);
+ 	} else {
+ 		/* default action: do nothing */
+-		return;
++		return 0;
+ 	}
+ 
+ 	return sched_pin(cpu % sched_ncpus());
+diff --git a/src/lib_timing.c b/src/lib_timing.c
+index af8cf68..7ec9652 100644
+--- a/src/lib_timing.c
++++ b/src/lib_timing.c
+@@ -1623,7 +1623,7 @@ bread(void* buf, long nbytes)
+ void
+ touch(char *buf, int nbytes)
+ {
+-	static	psize;
++	static int psize;
+ 
+ 	if (!psize) {
+ 		psize = getpagesize();
+-- 
+2.49.0
+

pkgs/nanos6/default.nix

@@ -19,7 +19,7 @@
 , useGit ? false
 , gitUrl ? "ssh://git@bscpm04.bsc.es/nanos6/nanos6"
 , gitBranch ? "master"
-, gitCommit ? "9f54c988e0a8b9c011d9d526acdb8d76f18fcae4"
+, gitCommit ? "f82762b66c82b5174a8eaad33f6c2f335ac759b4"
 }:
 
 assert enableJemalloc -> (jemallocNanos6 != null);
@@ -28,12 +28,12 @@ with lib;
 
 let
   release = rec {
-    version = "4.2";
+    version = "4.3";
     src = fetchFromGitHub {
       owner = "bsc-pm";
       repo = "nanos6";
       rev = "version-${version}";
-      hash = "sha256-tBrRGLCjSFYdmVGPAC2DzYY6HJyZGUOMeykujafn7+4=";
+      hash = "sha256-/c6WiKBsAo/01uvMRmjv0PMucbrgvaGmbxlPE6q+dfE=";
     };
   };
 

pkgs/nosv/default.nix

@@ -11,19 +11,19 @@
 , useGit ? false
 , gitUrl ? "git@gitlab-internal.bsc.es:nos-v/nos-v.git"
 , gitBranch ? "master"
-, gitCommit ? "cfd361bd1dd30c96da405e6bbaa7e78f5f93dfda"
+, gitCommit ? "9f47063873c3aa9d6a47482a82c5000a8c813dd8"
 }:
 
 with lib;
 
 let
   release = rec {
-    version = "3.1.0";
+    version = "3.2.0";
     src = fetchFromGitHub {
       owner = "bsc-pm";
       repo = "nos-v";
       rev = "${version}";
-      hash = "sha256-Pkre+ZZsREDxJLCoIoPN1HQDuUa2H1IQyKB3omg6qaU=";
+      hash = "sha256-yaz92426EM8trdkBJlISmAoG9KJCDTvoAW/HKrasvOw=";
     };
   };
 

pkgs/ovni/default.nix

@@ -7,7 +7,7 @@
 , useGit ? false
 , gitBranch ? "master"
 , gitUrl ? "ssh://git@bscpm04.bsc.es/rarias/ovni.git"
-, gitCommit ? "a7103f8510d1ec124c3e01ceb47d1e443e98bbf4"
+, gitCommit ? "e4f62382076f0cf0b1d08175cf57cc0bc51abc61"
 , enableDebug ? false
 # Only enable MPI if the build is native (fails on cross-compilation)
 , useMpi ? (stdenv.buildPlatform.canExecute stdenv.hostPlatform)
@@ -17,13 +17,13 @@ with lib;
 
 let
   release = rec {
-    version = "1.11.0";
+    version = "1.12.0";
     src = fetchFromGitHub {
       owner = "bsc-pm";
       repo = "ovni";
       rev = "${version}";
-      hash = "sha256-DEZUK1dvbPGH5WYkZ2hpP5PShkMxXkHOqMwgYUHHxeM=";
-    } // { shortRev = "a7103f8"; };
+      hash = "sha256-H04JvsVKrdqr3ON7JhU0g17jjlg/jzQ7eTfx9vUNd3E=";
+    } // { shortRev = "a73afcf"; };
   };
 
   git = rec {

pkgs/paraver/default.nix

@@ -1,5 +1,6 @@
 {
   stdenv
+, fetchFromGitHub
 , autoreconfHook
 , boost
 , libxml2
@@ -18,14 +19,23 @@ let
 in
 stdenv.mkDerivation rec {
   pname = "wxparaver";
-  version = "4.11.2";
+  version = "4.12.0";
 
-  src = builtins.fetchGit {
-    url = "https://github.com/bsc-performance-tools/wxparaver.git";
-    rev = "129e6b4a4f061e5a319049db8db1620f5de3bd70"; # v4.11.2 (missing tag)
-    ref = "master";
+  src = fetchFromGitHub {
+    owner = "bsc-performance-tools";
+    repo = "wxparaver";
+    rev = "v${version}";
+    sha256 = "sha256-YsO5gsuEFQdki3lQudEqgo5WXOt/fPdvNw5OxZQ86Zo=";
   };
 
+  patches = [
+    ./do-not-steal-focus-on-redraw.patch
+
+    # Fix for boost >=1.87 (thanks to gamezelda)
+    # https://aur.archlinux.org/cgit/aur.git/commit/?h=wxparaver&id=b0dcd08c472536e0a1a3cc1dfbc4c77d9f5e0d47
+    ./fix-boost-87.patch
+  ];
+
   hardeningDisable = [ "all" ];
 
   # Fix the PARAVER_HOME variable

pkgs/paraver/do-not-steal-focus-on-redraw.patch

@@ -0,0 +1,26 @@
+From 2b185e1b5ce52808b3026334851dbcd5a640ed4d Mon Sep 17 00:00:00 2001
+From: aleixbonerib <aleix.boneribo@bsc.es>
+Date: Mon, 10 Jun 2024 20:59:45 +0200
+Subject: [PATCH] fix: do not set focus on redraw
+
+Some wm can change the window size without focusing. Right now, when the
+plot is resized it takes back focus.
+---
+ src/gtimeline.cpp | 1 -
+ 1 file changed, 1 deletion(-)
+
+diff --git a/src/gtimeline.cpp b/src/gtimeline.cpp
+index 23ebef2..a896066 100644
+--- a/src/gtimeline.cpp
++++ b/src/gtimeline.cpp
+@@ -899,7 +899,6 @@ void gTimeline::redraw()
+ 
+   drawZone->Refresh();
+ 
+-  SetFocus();
+ }
+ 
+ 
+-- 
+2.44.1
+

pkgs/paraver/dont-expand-colors.patch

@@ -11,7 +11,7 @@ diff --git a/api/semanticcolor.cpp b/api/semanticcolor.cpp
 index 9f86960..22859eb 100644
 --- a/api/semanticcolor.cpp
 +++ b/api/semanticcolor.cpp
-@@ -232,8 +232,9 @@ rgb CodeColor::getColor( PRV_UINT32 pos ) const
+@@ -295,8 +295,9 @@ rgb SemanticColor::getColor( PRV_UINT32 pos ) const
  {
    if( pos == 0 && ParaverConfig::getInstance()->getColorsTimelineUseZero() )
      return ParaverConfig::getInstance()->getColorsTimelineColorZero();
@@ -22,26 +22,26 @@ index 9f86960..22859eb 100644
 +  return colors[ pos + 1 ];
  }
  
- void CodeColor::setColor( PRV_UINT32 whichPos, rgb whichColor )
-@@ -250,6 +251,12 @@ void CodeColor::setColor( PRV_UINT32 whichPos, rgb whichColor )
+ void SemanticColor::setColor( PRV_UINT32 whichPos, rgb whichColor )
+@@ -314,6 +315,12 @@ void SemanticColor::setColor( PRV_UINT32 whichPos, rgb whichColor )
    colors[ whichPos ] = whichColor;
  }
  
-+void CodeColor::cutAfter( PRV_UINT32 pos )
++void SemanticColor::cutAfter( PRV_UINT32 pos )
 +{
 +  if ( pos < colors.size() )
 +    colors.erase( colors.begin() + pos, colors.end() );
 +}
 +
- void CodeColor::setCustomColor( TSemanticValue whichValue, rgb color ) 
+ void SemanticColor::setCustomColor( TSemanticValue whichValue, rgb color ) 
  {
    customPalette[ whichValue ] = color;
 diff --git a/api/semanticcolor.h b/api/semanticcolor.h
 index a079556..bddf3d8 100644
 --- a/api/semanticcolor.h
 +++ b/api/semanticcolor.h
-@@ -98,6 +98,7 @@ class CodeColor: public SemanticColor
- 
+@@ -114,6 +114,7 @@ class SemanticColor
+     // Code Color methods
      PRV_UINT32 getNumColors() const;
      void setColor( PRV_UINT32 pos, rgb color );
 +    void cutAfter( PRV_UINT32 pos );
@@ -61,7 +61,7 @@ index b0d2050..ee2ab69 100644
    for ( auto it : semanticColors )
    {
      std::tie( tmpColor.red, tmpColor.green, tmpColor.blue ) = it.second;
-     myCodeColor.setColor( it.first, tmpColor );
+     mySemanticColor.setColor( it.first, tmpColor );
 +	if (it.first > maxValue)
 +      maxValue = it.first;
    }
@@ -69,7 +69,7 @@ index b0d2050..ee2ab69 100644
 +  // Cut the palette after the highest defined value, so there are no
 +  // extra expanded values
 +  if ( !pcfParser.expandColors )
-+	myCodeColor.cutAfter(maxValue);
++	mySemanticColor.cutAfter(maxValue);
 +
    myEventLabels = EventLabels( pcfParser );
    myStateLabels = StateLabels( pcfParser );

pkgs/paraver/fix-boost-87.patch

@@ -0,0 +1,87 @@
+From 7ecd888e2ebb9e8c5582851d3c50bff61022708e Mon Sep 17 00:00:00 2001
+From: =?UTF-8?q?Joan=20Bruguera=20Mic=C3=B3?= <joanbrugueram@gmail.com>
+Date: Sat, 29 Mar 2025 18:14:25 +0000
+Subject: [PATCH] tutorialsdownload: Fix Boost ASIO 1.87.0 removals
+
+---
+ src/tutorialsdownload.cpp | 25 ++++++++++++-------------
+ 1 file changed, 12 insertions(+), 13 deletions(-)
+
+diff --git a/src/tutorialsdownload.cpp b/src/tutorialsdownload.cpp
+index a1921fd..6ce9dc2 100644
+--- a/src/tutorialsdownload.cpp
++++ b/src/tutorialsdownload.cpp
+@@ -121,13 +121,13 @@ void TutorialsProgress::updateInstall( int whichValue )
+ class client
+ {
+   public:
+-    client( boost::asio::io_service& io_service,
++    client( boost::asio::io_context& io_context,
+             boost::asio::ssl::context& context,
+             const std::string& server, const std::string& path,
+             ofstream& storeFile,
+             TutorialsProgress *progress )
+-            : resolver_( io_service ),
+-              socket_( io_service, context ),
++            : resolver_( io_context ),
++              socket_( io_context, context ),
+               store_( storeFile ),
+               progress_( progress )
+     {
+@@ -143,8 +143,7 @@ class client
+ 
+         // Start an asynchronous resolve to translate the server and service names
+         // into a list of endpoints.
+-        tcp::resolver::query query( server, "https" );
+-        resolver_.async_resolve( query,
++        resolver_.async_resolve( server, "https",
+                                  boost::bind( &client::handle_resolve,
+                                               this,
+                                               boost::asio::placeholders::error,
+@@ -154,7 +153,7 @@ class client
+   private:
+ 
+     void handle_resolve( const boost::system::error_code& err,
+-                         tcp::resolver::iterator endpoint_iterator )
++                         const tcp::resolver::results_type& endpoints )
+     {
+       if ( !err )
+       {
+@@ -162,7 +161,7 @@ class client
+         socket_.set_verify_callback( boost::bind( &client::verify_certificate, this, _1, _2 ) );
+ 
+         boost::asio::async_connect( socket_.lowest_layer(), 
+-                                    endpoint_iterator,
++                                    endpoints,
+                                     boost::bind( &client::handle_connect, 
+                                                  this,
+                                                  boost::asio::placeholders::error ) );
+@@ -536,9 +535,9 @@ bool TutorialsDownload::downloadTutorialsList() const
+     boost::asio::ssl::context ctx( boost::asio::ssl::context::sslv23 );
+     ctx.set_default_verify_paths();
+ 
+-    boost::asio::io_service io_service;
+-    client c( io_service, ctx, server, path, storeFile, nullptr );
+-    io_service.run();
++    boost::asio::io_context io_context;
++    client c( io_context, ctx, server, path, storeFile, nullptr );
++    io_context.run();
+ 
+     doneDownload = true;
+   }
+@@ -580,9 +579,9 @@ bool TutorialsDownload::download( const TutorialData& whichTutorial, string& tut
+     boost::asio::ssl::context ctx( boost::asio::ssl::context::sslv23 );
+     ctx.set_default_verify_paths();
+ 
+-    boost::asio::io_service io_service;
+-    client c( io_service, ctx, std::string( server.mb_str() ), std::string( path.mb_str() ), storeFile, &progress );
+-    io_service.run();
++    boost::asio::io_context io_context;
++    client c( io_context, ctx, std::string( server.mb_str() ), std::string( path.mb_str() ), storeFile, &progress );
++    io_context.run();
+   }
+   catch ( ParaverKernelException& e )
+   {
+-- 
+2.49.0
+

pkgs/paraver/fix-libxml2-deprecation.patch

@@ -0,0 +1,23 @@
+commit 60aa3ffa05f6b40db191a880e9e622d608744c1f
+Author: Aleix Boné <aleix.boneribo@bsc.es>
+Date:   Sun Jul 21 12:11:30 2025 +0200
+
+    fix libxml2 deprecated macro
+
+diff --git a/configure.ac b/configure.ac
+index 7fe1876..3ce1091 100644
+--- a/configure.ac
++++ b/configure.ac
+@@ -46,7 +46,10 @@ AC_PROG_CPP
+ AC_PROG_CXXCPP
+ AC_PROG_SED
+ 
+-AM_PATH_XML2
++PKG_PROG_PKG_CONFIG
++PKG_CHECK_MODULES([XML], [libxml-2.0])
++
++AC_SUBST(XML_CPPFLAGS, $XML_CFLAGS)
+ 
+ AX_BOOST_BASE(1.36)
+ AX_BOOST_SERIALIZATION
+

pkgs/paraver/kernel.nix

@@ -1,32 +1,32 @@
 {
   stdenv
+, fetchFromGitHub
 , autoreconfHook
 , boost
 , libxml2
 , xml2
-, wxGTK32
 , autoconf
 , automake
 , pkg-config
 , zlib
 }:
 
-let
-  wx = wxGTK32;
-in
 stdenv.mkDerivation rec {
   pname = "paraver-kernel";
-  version = "${src.shortRev}";
+  version = "4.12.0";
 
-  src = builtins.fetchGit {
-    url = "https://github.com/bsc-performance-tools/paraver-kernel.git";
-    rev = "2e167da3cee78ca11e31b74faefb23f12bac2b8c"; # master (missing tag)
-    ref = "master";
+  src = fetchFromGitHub {
+    owner = "bsc-performance-tools";
+    repo = "paraver-kernel";
+    rev = "v${version}";
+    sha256 = "sha256-Xs7g8ITZhPt00v7o2WlTddbou8C8Rc9kBMFpl2WsCS4=";
   };
 
   patches = [
     # https://github.com/bsc-performance-tools/paraver-kernel/pull/11
-    ./dont-expand-colors.patch
+    # TODO: add this back if it's still relevant
+    # ./dont-expand-colors.patch
+    ./fix-libxml2-deprecation.patch
   ];
 
   hardeningDisable = [ "all" ];

pkgs/tampi/default.nix

@@ -15,7 +15,7 @@
 , useGit ? false
 , gitUrl ? "ssh://git@bscpm04.bsc.es/interoperability/tampi.git"
 , gitBranch ? "master"
-, gitCommit ? "a5c93bf8ab045b71ad4a8d5e2c991ce774db5cbc"
+, gitCommit ? "f6455db9d3124ae36e715a4874fd49720e79f20a"
 }:
 
 with lib;
@@ -24,12 +24,12 @@ assert enableOvni -> (ovni != null);
 
 let
   release = rec {
-    version = "4.0";
+    version = "4.1";
     src = fetchFromGitHub {
       owner = "bsc-pm";
       repo = "tampi";
       rev = "v${version}";
-      hash = "sha256-R7ew5tsrxGReTvOeeZe1FD0oThBhOHoDGv6Mo2sbmDg=";
+      hash = "sha256-SwfPSnwcZnRnSgNvCD5sFSUJRpWINqI5I4adj5Hh+XY=";
     };
   };
   git = rec {
@@ -46,15 +46,16 @@ in stdenv.mkDerivation rec {
   inherit (source) src version;
   enableParallelBuilding = true;
   separateDebugInfo = true;
-  buildInputs = [
+  nativeBuildInputs = [
     autoreconfHook
     automake
     autoconf
     libtool
     gnumake
+  ];
+  buildInputs = [
     boost
     mpi
-    gcc
   ] ++ optional (enableOvni) ovni;
   configureFlags = optional (enableOvni) "--with-ovni=${ovni}";
   dontDisableStatic = true;