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osu: adjust figures for publication

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This commit is contained in:
Rodrigo Arias
2021-04-09 16:02:28 +02:00
parent 821b4f0d15
commit 1cb63b464d
3 changed files with 120 additions and 72 deletions
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61
garlic/fig/osu/latency.R
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@@ -2,6 +2,7 @@ library(ggplot2)
library(dplyr, warn.conflicts = FALSE)
library(scales)
library(jsonlite)
library(stringr)
args=commandArgs(trailingOnly=TRUE)
@@ -15,7 +16,8 @@ dataset = jsonlite::stream_in(file(input_file), verbose=FALSE) %>%
# We only need the nblocks and time
df = select(dataset, config.unitName, config.nodes, config.ntasksPerNode, config.cpusPerTask, size, latency) %>%
rename(unitName=config.unitName)
rename(unitName=config.unitName) %>%
mutate(unitName=str_replace(unitName, "osu-latency-", ""))
nodes = unique(df$config.nodes)
tasksPerNode = unique(df$config.ntasksPerNode)
@@ -30,34 +32,45 @@ df = group_by(df, unitName, sizeFactor) %>%
breaks = 10^(-10:10)
minor_breaks <- rep(1:9, 21)*(10^rep(-10:10, each=9))
p = ggplot(data=df, aes(x=size, y=latency)) +
labs(x="Size (bytes)", y="Latency (us)",
title=sprintf("OSU latency benchmark nodes=%d tasksPerNode=%d cpusPerTask=%d",
nodes, tasksPerNode, cpusPerTask),
subtitle=input_file) +
geom_boxplot(aes(color=unitName, group=interaction(unitName, sizeFactor))) +
scale_x_continuous(trans=log2_trans()) +
scale_y_log10(breaks = breaks, minor_breaks = minor_breaks) +
theme_bw() +
theme(legend.position = c(0.8, 0.2))
ppi=300
h=4
w=8
ggsave("boxplot.png", plot=p, width=w, height=h, dpi=ppi)
ggsave("boxplot.pdf", plot=p, width=w, height=h, dpi=ppi)
h=3
w=6
p = ggplot(data=df, aes(x=size, y=medianLatency)) +
labs(x="Size (bytes)", y="Latency (us)",
title=sprintf("OSU benchmark: osu_latency",
nodes, tasksPerNode, cpusPerTask),
subtitle=input_file) +
geom_line(aes(color=unitName, linetype=unitName)) +
geom_point(aes(color=unitName, shape=unitName)) +
scale_x_continuous(trans=log2_trans()) +
labs(x="Message size", y="Median latency (µs)",
#title=sprintf("OSU benchmark: osu_latency", nodes, tasksPerNode, cpusPerTask),
subtitle=gsub("-", "\uad", input_file)) +
geom_line(aes(linetype=unitName)) +
geom_point(aes(shape=unitName), size=2) +
scale_y_log10(breaks = breaks, minor_breaks = minor_breaks) +
scale_x_continuous(trans=log2_trans(),
labels=label_bytes("auto_binary"),
n.breaks = 12)+
scale_shape_discrete(name = "MPI version") +
scale_linetype_discrete(name = "MPI version") +
theme_bw() +
theme(legend.position = c(0.2, 0.8))
theme(plot.subtitle = element_text(size=8, family="mono")) +
theme(legend.justification = c(0,1), legend.position = c(0.01, 0.99)) +
theme(axis.text.x = element_text(angle=-45, hjust=0))
ggsave("median-lines.png", plot=p, width=w, height=h, dpi=ppi)
ggsave("median-lines.pdf", plot=p, width=w, height=h, dpi=ppi)
p = ggplot(data=df, aes(x=size, y=latency)) +
labs(x="Size (bytes)", y="Latency (us)",
#title=sprintf("OSU benchmark: osu_latency", nodes, tasksPerNode, cpusPerTask),
subtitle=input_file) +
geom_line(aes(y=medianLatency, linetype=unitName, group=unitName)) +
geom_point(aes(shape=unitName), size=2) +
scale_y_log10(breaks = breaks, minor_breaks = minor_breaks) +
scale_x_continuous(trans=log2_trans(),
labels=label_bytes("auto_binary"),
breaks=unique(df$size),
minor_breaks=NULL) +
theme_bw() +
theme(plot.subtitle = element_text(color="gray50")) +
theme(axis.text.x = element_text(angle=-45, hjust=0)) +
theme(legend.position = c(0.2, 0.8))
ggsave("latency.png", plot=p, width=w, height=h, dpi=ppi)
ggsave("latency.pdf", plot=p, width=w, height=h, dpi=ppi)