Add install check for OpenMP{,-V}

m/common/base.nix

@@ -7,7 +7,6 @@
     ./base/august-shutdown.nix
     ./base/boot.nix
     ./base/env.nix
-    ./base/fish.nix
     ./base/fs.nix
     ./base/hw.nix
     ./base/net.nix

m/common/base/env.nix

@@ -5,8 +5,6 @@
     vim wget git htop tmux pciutils tcpdump ripgrep nix-index nixos-option
     nix-diff ipmitool freeipmi ethtool lm_sensors cmake gnumake file tree
     ncdu perf ldns pv
-    nix-output-monitor
-    nixfmt-tree
     # From jungle overlay
     osumb nixgen
   ];
@@ -30,22 +28,9 @@
     VISUAL = "vim";
   };
 
-  programs.bash.promptInit = # bash
+  programs.bash.promptInit = ''
-    ''
+    PS1="\h\\$ "
-      if echo "$PATH" | grep -qc '/nix/store'; then
+  '';
-        # Inside a nix shell, dumb prompt
-        PS1="\h\\$ "
-      elif [ "$TERM" != "dumb" ] ; then
-        PROMPT_COLOR="1;31m"
-        ((UID)) && PROMPT_COLOR="1;32m"
-
-        PS1="\n\[\033[$PROMPT_COLOR\][\[\e]0;\u@\h: \w\a\]\u@\h:\w]\\$\[\033[0m\] "
-
-        if test "$TERM" = "xterm"; then
-          PS1="\[\033]2;\h:\u:\w\007\]$PS1"
-        fi
-      fi
-    '';
 
   time.timeZone = "Europe/Madrid";
   i18n.defaultLocale = "en_DK.UTF-8";

m/common/base/fish.nix

@@ -1,3 +0,0 @@
-{
-  programs.fish.enable = true;
-}

m/common/base/users.nix

@@ -87,13 +87,6 @@
         openssh.authorizedKeys.keys = [
           "ssh-ed25519 AAAAC3NzaC1lZDI1NTE5AAAAIIIFiqXqt88VuUfyANkZyLJNiuroIITaGlOOTMhVDKjf abonerib@bsc"
         ];
-        shell = pkgs.fish;
-        packages = with pkgs; [
-          fzf
-          jujutsu
-          neovim
-          starship
-        ];
       };
 
       vlopez = {

m/weasel/configuration.nix

@@ -1,10 +1,9 @@
-{ lib, pkgs, ... }:
+{ lib, ... }:
 
 {
   imports = [
     ../common/ssf.nix
     ../module/hut-substituter.nix
-    ./hydra.nix
   ];
 
   # Select this using the ID to avoid mismatches
@@ -31,22 +30,4 @@
       prefixLength = 24;
     } ];
   };
-
-  services.nix-serve = {
-    enable = true;
-    bindAddress = "0.0.0.0";
-    port = 5000;
-    package = pkgs.haskell.lib.overrideSrc (pkgs.haskell.packages.ghc96.nix-serve-ng.override { nix = pkgs.nixVersions.nix_2_28; }) {
-      src = pkgs.fetchgit {
-        url = "https://jungle.bsc.es/git/abonerib/nix-serve-ng.git";
-        rev = "9c056641300a826db66b66d7e584b2541d38927a";
-        hash = "sha256-y69ZchFiZOU71eyeljcQgLxkLk5JUzZfanq8Yzw4MkI=";
-      };
-      version = "unstable";
-    };
-
-    secretKeyFile = "/var/cache-priv-key.pem";
-    # Public key:
-    # 10.0.40.6:8jBhIdXEBap+Qo+vc1/fnV9vj43A2oDk839EEheRr/U=
-  };
 }

m/weasel/hydra.nix

@@ -1,57 +0,0 @@
-{
-  config,
-  pkgs,
-  lib,
-  ...
-}:
-{
-  services.hydra = {
-    enable = true;
-
-    # Wrap hydra so it puts quiet flag every time... This is dumb and annoying,
-    # but i can't override the systemd ExecStart without running into infinite
-    # recursion.
-    package = pkgs.symlinkJoin {
-      name = "hydra-quiet";
-      paths = [ pkgs.hydra ];
-      postBuild = ''
-        for prog in hydra-queue-runner hydra-evaluator ; do
-          prev=$(realpath $out/bin/$prog)
-          rm $out/bin/$prog
-          cat >$out/bin/$prog <<EOF
-        #!/bin/sh
-        args=()
-        for arg in "\$@"; do
-          if [ "\$arg" != "-v" ]; then
-            args+=("\$arg")
-          fi
-        done
-        exec $prev --quiet "\''${args[@]}"
-        EOF
-
-          chmod +x $out/bin/$prog
-        done
-      '';
-    };
-
-    hydraURL = "http://localhost:3001"; # externally visible URL
-    notificationSender = "hydra@jungle.bsc.es"; # e-mail of Hydra service
-    port = 3001;
-    # a standalone Hydra will require you to unset the buildMachinesFiles list to avoid using a nonexistant /etc/nix/machines
-    buildMachinesFiles = [ ];
-    # you will probably also want, otherwise *everything* will be built from scratch
-    useSubstitutes = true;
-    listenHost = "0.0.0.0"; # Force IPv4
-  };
-
-  systemd.services.hydra-send-stats.enable = lib.mkForce false;
-
-  networking.firewall.allowedTCPPorts = [ config.services.hydra.port ];
-
-  nix.settings.extra-allowed-uris = [
-    "git+ssh://git@bscpm04.bsc.es"
-    "git+ssh://git@gitlab-internal.bsc.es"
-    "https://github.com"
-    "git+ssh://github.com"
-  ];
-}

overlay.nix

@@ -9,9 +9,6 @@ let
   bscPkgs = {
     agenix = prev.callPackage ./pkgs/agenix/default.nix { };
     amd-uprof = prev.callPackage ./pkgs/amd-uprof/default.nix { };
-    aoccUnwrapped = callPackage ./pkgs/aocc/unwrapped.nix { };
-    aocc = callPackage ./pkgs/aocc/default.nix { };
-    stdenvAocc = final.overrideCC final.stdenv final.aocc;
     bench6 = callPackage ./pkgs/bench6/default.nix { };
     bigotes = callPackage ./pkgs/bigotes/default.nix { };
     clangOmpss2 = callPackage ./pkgs/llvm-ompss2/default.nix { };
@@ -22,12 +19,7 @@ let
     cudainfo = prev.callPackage ./pkgs/cudainfo/default.nix { };
     #extrae = callPackage ./pkgs/extrae/default.nix { }; # Broken and outdated
     gpi-2 = callPackage ./pkgs/gpi-2/default.nix { };
-    gromacs = callPackage ./pkgs/gromacs/default.nix { enableSYCL = true; };
-    intel-apt = callPackage ./pkgs/intel-oneapi/packages.nix { };
     intelPackages_2023 = callPackage ./pkgs/intel-oneapi/2023.nix { };
-    intelPackages_2024 = final.intel-apt.hpckit_2024;
-    intelPackages_2025 = final.intel-apt.hpckit_2025;
-    intelPackages = final.intelPackages_2025;
     jemallocNanos6 = callPackage ./pkgs/nanos6/jemalloc.nix { };
     # FIXME: Extend this to all linuxPackages variants. Open problem, see:
     # https://discourse.nixos.org/t/whats-the-right-way-to-make-a-custom-kernel-module-available/4636
@@ -37,7 +29,6 @@ let
     linuxPackages_latest = prev.linuxPackages_latest.extend(_final: _prev: {
       amd-uprof-driver = _prev.callPackage ./pkgs/amd-uprof/driver.nix { };
     });
-    llvm-intel = callPackage ./pkgs/llvm-intel/default.nix { };
     lmbench = callPackage ./pkgs/lmbench/default.nix { };
     # Broken and unmantained
     # mcxx = callPackage ./pkgs/mcxx/default.nix { };
@@ -53,7 +44,6 @@ let
     #nix-wrap = callPackage ./pkgs/nix-wrap/default.nix { };
     nodes = callPackage ./pkgs/nodes/default.nix { };
     nosv = callPackage ./pkgs/nosv/default.nix { };
-    oneMath = callPackage ./pkgs/onemath/default.nix { };
     openmp = callPackage ./pkgs/llvm-ompss2/openmp.nix { monorepoSrc = final.clangOmpss2Unwrapped.src; version = final.clangOmpss2Unwrapped.version; };
     openmpv = final.openmp.override { enableNosv = true; enableOvni = true; };
     osumb = callPackage ./pkgs/osu/default.nix { };
@@ -61,20 +51,9 @@ let
     ovniGit = final.ovni.override { useGit = true; };
     papi = callPackage ./pkgs/papi/default.nix { papi = prev.papi; };
     paraverKernel = callPackage ./pkgs/paraver/kernel.nix { };
-    pertalde = callPackage ./pkgs/pertalde/default.nix { };
-    pocl = callPackage ./pkgs/pocl/default.nix { };
-    pocl-unpublished = callPackage ./pkgs/pocl/default.nix {
-      gitUrl = "git@github.com:pocl/unpublished.git";
-      gitBranch = "loopvec-next";
-      gitCommit = "74f7e2b5644b1c5598205c8cac1914bb4c5dadec";
-      enableNOSV = false;
-      enableOVNI = false;
-    };
-    pocl-noicd = callPackage ./pkgs/pocl/default.nix { enableICD = false; };
     prometheus-slurm-exporter = prev.callPackage ./pkgs/slurm-exporter/default.nix { };
     #pscom = callPackage ./pkgs/parastation/pscom.nix { }; # Unmaintaned
     #psmpi = callPackage ./pkgs/parastation/psmpi.nix { }; # Unmaintaned
-    rodinia = callPackage ./pkgs/rodinia/default.nix { };
     slurm = import ./pkgs/slurm/default.nix { slurm = prev.slurm; };
     sonar = callPackage ./pkgs/sonar/default.nix { };
     stdenvClangOmpss2 = final.stdenv.override { cc = final.clangOmpss2; allowedRequisites = null; };
@@ -83,18 +62,8 @@ let
     stdenvClangOmpss2NodesOmpv = final.stdenv.override { cc = final.clangOmpss2NodesOmpv; allowedRequisites = null; };
     tagaspi = callPackage ./pkgs/tagaspi/default.nix { };
     tampi = callPackage ./pkgs/tampi/default.nix { };
-    tasycl = callPackage ./pkgs/tasycl/default.nix { };
-    tasycl-acpp = callPackage ./pkgs/tasycl/default.nix { useIntel = false; };
-    unified-runtime = callPackage ./pkgs/unified-runtime/default.nix { };
     upc-qaire-exporter = prev.callPackage ./pkgs/upc-qaire-exporter/default.nix { };
-    taopencl = callPackage ./pkgs/taopencl/default.nix { };
     wxparaver = callPackage ./pkgs/paraver/default.nix { };
-
-    _cuda = prev._cuda.extend (_: _prev: final.lib.recursiveUpdate _prev {
-      extensions = _prev.extensions ++ [(finalAttrs: _: {
-        tacuda = finalAttrs.callPackage ./pkgs/tacuda/default.nix { };
-      })];
-    });
   };
 
   tests = rec {
@@ -102,13 +71,6 @@ let
     #sigsegv = callPackage ./test/reproducers/sigsegv.nix { };
     hello-c = callPackage ./test/compilers/hello-c.nix { };
     hello-cpp = callPackage ./test/compilers/hello-cpp.nix { };
-    hello-sycl = callPackage ./test/compilers/hello-sycl.nix { };
-    hello-syclompss = callPackage ./test/compilers/icpx-ompss2.nix { };
-    hello-sycl-pocl = (callPackage ./test/compilers/hello-sycl.nix { }).withPocl;
-    hello-sycl-intel = (callPackage ./test/compilers/hello-sycl.nix { }).withIntel;
-    hello-syclompss-pocl = (callPackage ./test/compilers/icpx-ompss2.nix { }).withPocl;
-    hello-syclompss-intel = (callPackage ./test/compilers/icpx-ompss2.nix { }).withIntel;
-
     lto = callPackage ./test/compilers/lto.nix { };
     asan = callPackage ./test/compilers/asan.nix { };
     intel2023-icx-c   = hello-c.override   { stdenv = final.intelPackages_2023.stdenv; };
@@ -118,13 +80,6 @@ let
     intel2023-ifort   = callPackage ./test/compilers/hello-f.nix {
       stdenv = final.intelPackages_2023.stdenv-ifort;
     };
-    intel2024-icx-c   = hello-c.override   { stdenv = final.intelPackages_2024.stdenv; };
-    intel2025-icx-c   = hello-c.override   { stdenv = final.intelPackages_2025.stdenv; };
-    intel2024-icx-cpp = hello-cpp.override { stdenv = final.intelPackages_2024.stdenv; };
-    intel2025-icx-cpp = hello-cpp.override { stdenv = final.intelPackages_2025.stdenv; };
-    # intel2023-sycl    = hello-sycl.override { intelPackages = final.intelPackages_2023; }; # broken
-    intel2024-sycl    = hello-sycl.override { intelPackages = final.intelPackages_2024; };
-    intel2025-sycl    = hello-sycl.override { intelPackages = final.intelPackages_2025; };
     clangOmpss2-lto   = lto.override       { stdenv = final.stdenvClangOmpss2Nanos6; };
     clangOmpss2-asan  = asan.override      { stdenv = final.stdenvClangOmpss2Nanos6; };
     clangOmpss2-task  = callPackage ./test/compilers/ompss2.nix {
@@ -142,15 +97,6 @@ let
     clangNosvOmpv-ld = callPackage ./test/compilers/clang-openmp-ld.nix {
       stdenv = final.stdenvClangOmpss2NodesOmpv;
     };
-
-    ocl-build = callPackage ./test/compilers/opencl.nix { };
-    ocl-build-noicd = callPackage ./test/compilers/opencl.nix { ocl-icd = final.pocl-noicd; };
-
-    pocl = callPackage ./test/compilers/pocl.nix { };
-    ocl-run-pocl = ocl-build.test-icd;
-    ocl-run-pocl-noicd = ocl-build-noicd.test-noicd;
-
-    sycl-ls = callPackage ./test/compilers/sycl-ls.nix { };
   };
 
   # For now, only build toplevel packages in CI/Hydra

pkgs/aocc/default.nix

@@ -1,17 +0,0 @@
-{
-  wrapCCWith,
-  aoccUnwrapped,
-}:
-
-let
-  cc = aoccUnwrapped;
-in
-wrapCCWith {
-  inherit cc;
-  nixSupport.cc-cflags = [ "-isystem ${cc}/include" ];
-
-  extraBuildCommands = ''
-    wrap aocc   $wrapper $ccPath/clang
-    wrap aocc++ $wrapper $ccPath/clang++
-  '';
-}

pkgs/aocc/unwrapped.nix

@@ -1,52 +0,0 @@
-{
-  lib,
-  fetchurl,
-  stdenv,
-  autoPatchelfHook,
-  rocmPackages,
-  zlib,
-  libffi,
-  elfutils,
-}:
-
-let
-  # in newer nixpkgs the runtime is hsakmt
-  rocmRuntime = if rocmPackages ? hsakmt then rocmPackages.hsakmt else rocmPackages.rocm-runtime;
-in
-stdenv.mkDerivation {
-  pname = "aocc-compiler";
-  version = "5.0.0";
-
-  src = fetchurl {
-    url = "https://download.amd.com/developer/eula/aocc/aocc-5-0/aocc-compiler-5.0.0.tar";
-    sha256 = "sha256-lm+sLSx1np3m6WnBCtp6ezBsET9/HgfqN2gp7IY4Dao=";
-  };
-
-  nativeBuildInputs = [ autoPatchelfHook ];
-  buildInputs = [
-    elfutils
-    zlib
-    rocmRuntime
-    stdenv.cc.cc.lib
-  ];
-  phases = [
-    "unpackPhase"
-    "installPhase"
-    "fixupPhase"
-  ];
-  dontStrip = true;
-
-  installPhase = ''
-    mkdir -p $out
-    cp -a . $out/
-
-    ln -s ${lib.getLib libffi}/lib/libffi.so $out/lib/libffi.so.6
-  '';
-
-  passthru = {
-    inherit rocmRuntime;
-    isClang = true; # Needed for wrapCCWith
-  };
-
-  meta.mainProgram = "clang";
-}

pkgs/gromacs/default.nix

@@ -1,190 +0,0 @@
-{
-  lib,
-  stdenv,
-  fetchurl,
-  cmake,
-  hwloc,
-  fftw,
-  perl,
-  blas,
-  lapack,
-  llvmPackages,
-  intelPackages ? null,
-  mpi,
-  cudaPackages,
-  plumed,
-  singlePrec ? true,
-  config,
-  enableSYCL ? false,
-  enableCuda ? config.cudaSupport,
-  enableMpi ? false,
-  enablePlumed ? false,
-  cpuAcceleration ? null,
-}:
-
-# CUDA is only implemented for single precission
-assert enableCuda -> singlePrec;
-
-assert !(enableSYCL && enableCuda);
-
-assert enableSYCL -> intelPackages != null;
-
-let
-  inherit (cudaPackages.flags) cmakeCudaArchitecturesString;
-
-  # Select reasonable defaults for all major platforms
-  # The possible values are defined in CMakeLists.txt:
-  # AUTO None SSE2 SSE4.1 AVX_128_FMA AVX_256 AVX2_256
-  # AVX2_128 AVX_512 AVX_512_KNL MIC ARM_NEON ARM_NEON_ASIMD
-  SIMD =
-    x:
-    if (cpuAcceleration != null) then
-      x
-    else if stdenv.hostPlatform.system == "i686-linux" then
-      "SSE2"
-    else if stdenv.hostPlatform.system == "x86_64-linux" then
-      "SSE4.1"
-    else if stdenv.hostPlatform.system == "x86_64-darwin" then
-      "SSE4.1"
-    else if stdenv.hostPlatform.system == "aarch64-linux" then
-      "ARM_NEON_ASIMD"
-    else
-      "None";
-
-  source =
-    if enablePlumed then
-      {
-        version = "2024.2";
-        hash = "sha256-gCp+M18uiVdw9XsVnk7DaOuw/yzm2sz3BsboAlw2hSs=";
-      }
-    else
-      {
-        version = "2025.3";
-        hash = "sha256-i9/KAmjz8Qp8o8BuWbYvc+oCQgxnIRwP85EvMteDPGU=";
-      };
-
-  stdenv' = if enableSYCL then intelPackages.stdenv else stdenv;
-
-in
-stdenv'.mkDerivation rec {
-  pname = "gromacs";
-  version = source.version;
-
-  src = fetchurl {
-    url = "ftp://ftp.gromacs.org/pub/gromacs/gromacs-${version}.tar.gz";
-    inherit (source) hash;
-  };
-
-  patches = [ (if enablePlumed then ./pkgconfig-2024.patch else ./pkgconfig-2025.patch) ];
-
-  postPatch = lib.optionalString enablePlumed ''
-    plumed patch -p -e gromacs-${source.version}
-  '';
-
-  outputs = [
-    "out"
-    "dev"
-    "man"
-  ];
-
-  nativeBuildInputs = [
-    cmake
-  ]
-  ++ lib.optional enablePlumed plumed
-  ++ lib.optionals enableCuda [ cudaPackages.cuda_nvcc ];
-
-  env.MKLROOT = intelPackages.mkl;
-
-  buildInputs = [
-    fftw
-    perl
-    hwloc
-    blas
-    lapack
-  ]
-  ++ lib.optional enableMpi mpi
-  ++ lib.optionals enableCuda [
-    cudaPackages.cuda_cccl
-    cudaPackages.cuda_cudart
-    cudaPackages.libcufft
-    cudaPackages.cuda_profiler_api
-  ]
-  ++ lib.optional stdenv.hostPlatform.isDarwin llvmPackages.openmp;
-
-  propagatedBuildInputs = lib.optional enableMpi mpi;
-  propagatedUserEnvPkgs = lib.optional enableMpi mpi;
-
-  cmakeFlags = [
-    (lib.cmakeBool "GMX_HWLOC" true)
-    "-DGMX_SIMD:STRING=${SIMD cpuAcceleration}"
-    "-DGMX_OPENMP:BOOL=TRUE"
-    "-DBUILD_SHARED_LIBS=ON"
-  ]
-  ++ (
-    if singlePrec then
-      [
-        "-DGMX_DOUBLE=OFF"
-      ]
-    else
-      [
-        "-DGMX_DOUBLE=ON"
-        "-DGMX_DEFAULT_SUFFIX=OFF"
-      ]
-  )
-  ++ (
-    if enableMpi then
-      [
-        "-DGMX_MPI:BOOL=TRUE"
-        "-DGMX_THREAD_MPI:BOOL=FALSE"
-      ]
-    else
-      [
-        "-DGMX_MPI:BOOL=FALSE"
-      ]
-  )
-  ++ (lib.optionals enableSYCL [
-    "-DGMX_GPU=SYCL"
-    "-DGMX_OPENMP=OFF" # TODO: enable OpenMP with SYCL?
-  ])
-  ++ lib.optionals enableCuda [
-    "-DGMX_GPU=CUDA"
-    (lib.cmakeFeature "CMAKE_CUDA_ARCHITECTURES" cmakeCudaArchitecturesString)
-
-    # Gromacs seems to ignore and override the normal variables, so we add this ad hoc:
-    (lib.cmakeFeature "GMX_CUDA_TARGET_COMPUTE" cmakeCudaArchitecturesString)
-  ];
-
-  postInstall = ''
-    moveToOutput share/cmake $dev
-  '';
-
-  meta = with lib; {
-    homepage = "https://www.gromacs.org";
-    license = licenses.lgpl21Plus;
-    description = "Molecular dynamics software package";
-    longDescription = ''
-      GROMACS is a versatile package to perform molecular dynamics,
-      i.e. simulate the Newtonian equations of motion for systems
-      with hundreds to millions of particles.
-
-      It is primarily designed for biochemical molecules like
-      proteins, lipids and nucleic acids that have a lot of
-      complicated bonded interactions, but since GROMACS is
-      extremely fast at calculating the nonbonded interactions (that
-      usually dominate simulations) many groups are also using it
-      for research on non-biological systems, e.g. polymers.
-
-      GROMACS supports all the usual algorithms you expect from a
-      modern molecular dynamics implementation, (check the online
-      reference or manual for details), but there are also quite a
-      few features that make it stand out from the competition.
-
-      See: https://www.gromacs.org/about.html for details.
-    '';
-    platforms = platforms.unix;
-    maintainers = with maintainers; [
-      sheepforce
-      markuskowa
-    ];
-  };
-}

pkgs/gromacs/pkgconfig-2024.patch

@@ -1,24 +0,0 @@
-diff --git a/src/external/muparser/muparser.pc.in b/src/external/muparser/muparser.pc.in
-index 646787cb53..9b97ad57f7 100644
---- a/src/external/muparser/muparser.pc.in
-+++ b/src/external/muparser/muparser.pc.in
-@@ -1,7 +1,5 @@
--prefix=@CMAKE_INSTALL_PREFIX@
--exec_prefix=${prefix}
--libdir=${prefix}/@CMAKE_INSTALL_LIBDIR@
--includedir=${prefix}/@CMAKE_INSTALL_INCLUDEDIR@
-+libdir=@CMAKE_INSTALL_FULL_LIBDIR@
-+includedir=@CMAKE_INSTALL_FULL_INCLUDEDIR@
- 
- Name: @PACKAGE_NAME@
- Description: Mathematical expressions parser library
-diff --git a/src/gromacs/libgromacs.pc.cmakein b/src/gromacs/libgromacs.pc.cmakein
-index ec1ed6684e..ca1105474a 100644
---- a/src/gromacs/libgromacs.pc.cmakein
-+++ b/src/gromacs/libgromacs.pc.cmakein
-@@ -1,4 +1,4 @@
--libdir=@CMAKE_INSTALL_PREFIX@/@CMAKE_INSTALL_LIBDIR@
-+libdir=@CMAKE_INSTALL_FULL_LIBDIR@
- 
- Name: libgromacs@GMX_LIBS_SUFFIX@
- Description: Gromacs library

pkgs/gromacs/pkgconfig-2025.patch

@@ -1,36 +0,0 @@
-diff --git a/src/external/muparser/muparser.pc.in b/src/external/muparser/muparser.pc.in
-index 646787cb53..d26e84de8f 100644
---- a/src/external/muparser/muparser.pc.in
-+++ b/src/external/muparser/muparser.pc.in
-@@ -1,11 +1,9 @@
--prefix=@CMAKE_INSTALL_PREFIX@
--exec_prefix=${prefix}
--libdir=${prefix}/@CMAKE_INSTALL_LIBDIR@
--includedir=${prefix}/@CMAKE_INSTALL_INCLUDEDIR@
--
--Name: @PACKAGE_NAME@
--Description: Mathematical expressions parser library
--Version: @MUPARSER_VERSION@
--Requires:
--Libs: -L${libdir} -lmuparser
--Cflags: -I${includedir} @PKG_CONFIG_FLAGS@
-+libdir=@CMAKE_INSTALL_FULL_LIBDIR@
-+includedir=@CMAKE_INSTALL_FULL_INCLUDEDIR@
-+
-+Name: @PACKAGE_NAME@
-+Description: Mathematical expressions parser library
-+Version: @MUPARSER_VERSION@
-+Requires:
-+Libs: -L${libdir} -lmuparser
-+Cflags: -I${includedir} @PKG_CONFIG_FLAGS@
-diff --git a/src/gromacs/libgromacs.pc.cmakein b/src/gromacs/libgromacs.pc.cmakein
-index af9b5a6dc0..5f58d549bf 100644
---- a/src/gromacs/libgromacs.pc.cmakein
-+++ b/src/gromacs/libgromacs.pc.cmakein
-@@ -1,5 +1,4 @@
--prefix=@CMAKE_INSTALL_PREFIX@
--libdir=${prefix}/@CMAKE_INSTALL_LIBDIR@
-+libdir=@CMAKE_INSTALL_FULL_LIBDIR@
-
- Name: libgromacs@GMX_LIBS_SUFFIX@
- Description: Gromacs library

pkgs/intel-oneapi/2023.nix

@@ -40,19 +40,45 @@ let
     mpi      = "2021.9.0";
   };
 
-  findMatch = name:
+  aptPackageIndex = stdenv.mkDerivation {
-  let
+    name = "intel-oneapi-packages";
-    aptPackages = builtins.fromJSON (builtins.readFile ./packages.json);
+    srcs = [
-    matches = lib.filter (x: name == x.pname) aptPackages;
+      # Run update.sh to update the package lists
-    n = lib.length matches;
+      ./amd64-packages ./all-packages
-    match = builtins.traceVerbose (name + " -- ${builtins.toString n}") (builtins.head matches);
+    ];
+    phases = [ "installPhase" ];
+    installPhase = ''
+      awk -F': ' '\
+        BEGIN   { print "[ {" } \
+        NR>1 && /^Package: / { print "} {"; } \
+        /: /    { printf "%s = \"%s\";\n", $1, $2 } \
+        END     { print "} ]" }' $srcs > $out
+    '';
+  };
 
-    apthost = "https://apt.repos.intel.com/oneapi/";
+  aptPackages = import aptPackageIndex;
+
+  apthost = "https://apt.repos.intel.com/oneapi/";
+
+  getSum = pkgList: name:
+  let
+    matches = lib.filter (x: name == x.Package) pkgList;
+    #n = lib.length matches;
+    #match = builtins.trace (name + " -- ${builtins.toString n}") (lib.elemAt matches 0);
+    match = lib.elemAt matches 0;
   in
-    {
+    match.SHA256;
-      url = apthost + match.filename;
+
-      sha256 = match.sha256;
+  getUrl = pkgList: name:
-    };
+  let
+    matches = lib.filter (x: name == x.Package) pkgList;
+    #match = assert lib.length matches == 1; lib.elemAt matches 0;
+    n = lib.length matches;
+    match =
+      #builtins.trace (name + " -- n=${builtins.toString n}")
+      (lib.elemAt matches 0);
+  in
+    apthost + match.Filename;
 
   uncompressDebs = debs: name: stdenv.mkDerivation {
     name = name;
@@ -72,7 +98,10 @@ let
 
   joinDebs = name: names:
   let
-    debs = builtins.map (x: builtins.fetchurl (findMatch x)) names;
+    urls = builtins.map (x: getUrl aptPackages x) names;
+    sums = builtins.map (x: getSum aptPackages x) names;
+    getsrc = url: sha256: builtins.fetchurl { inherit url sha256; };
+    debs = lib.zipListsWith getsrc urls sums;
   in
     uncompressDebs debs "${name}-source";
 
@@ -446,7 +475,7 @@ let
     '';
   };
 
-  ifort-wrapper = wrapIntel {
+  ifort-wrapper = wrapIntel rec {
     cc = intel-compiler-fortran;
     mygcc = gcc;
     extraBuild = ''

pkgs/intel-oneapi/packages.nix

@@ -1,297 +0,0 @@
-{
-  lib,
-  stdenv,
-  callPackage,
-  dpkg,
-  fetchurl,
-
-  sqlite,
-  elfutils,
-}:
-
-let
-  inherit (builtins)
-    attrNames
-    attrValues
-    concatMap
-    elem
-    filter
-    fromJSON
-    getAttr
-    groupBy
-    head
-    isNull
-    listToAttrs
-    map
-    mapAttrs
-    readFile
-    replaceStrings
-    splitVersion
-    ;
-  inherit (lib)
-    converge
-    findFirst
-    groupBy'
-    hasPrefix
-    optional
-    pipe
-    take
-    toInt
-    toList
-    versionAtLeast
-    versionOlder
-    ;
-
-  aptData = fromJSON (readFile ./packages.json);
-
-  # Compare versions in debian control file syntax
-  # See: https://www.debian.org/doc/debian-policy/ch-relationships.html#syntax-of-relationship-fields
-  #
-  # NOTE: this is not a proper version comparison
-  #
-  # A proper version solver, should aggregate dependencies with the same name
-  # and compute the constraint (e.g. a (>= 2) a (<< 5) -> 2 <= a << 5)
-  #
-  # But in the intel repo, there are no such "duplicated" dependencies to specify
-  # upper limits, which leads to issues when intel-hpckit-2021 depends on things
-  # like intel-basekit >= 2021.1.0-2403 and we end up installing the newest
-  # basekit instead of the one from 2021.
-  #
-  # To mitigate this, >= is set to take the latest version with matching major
-  # and minor (only revision and patch are allowed to change)
-  compareVersions =
-    got: kind: want:
-    let
-      g0 = take 2 (splitVersion got);
-      w0 = take 2 (splitVersion want);
-    in
-    if isNull want then
-      true
-    else if kind == "=" then
-      got == want
-    else if kind == "<<" then
-      versionOlder got want
-    else if kind == "<=" then
-      versionAtLeast want got
-    else if kind == ">>" then
-      versionOlder want got
-    else if kind == ">=" then
-      (g0 == w0) && versionAtLeast got want # always match major version
-    else
-      throw "unknown operation: ${kind}";
-
-  findMatching =
-    {
-      pname,
-      kind,
-      version,
-    }:
-    findFirst (x: pname == x.pname && compareVersions x.version kind version) null aptData;
-
-  isIntel = pkg: (hasPrefix "intel-" pkg.pname);
-
-  expandDeps =
-    pkg: (map findMatching (filter isIntel pkg.dependencies)) ++ (optional (pkg.size != 0) pkg);
-
-  # get the oldest by major version. If they have the same major version, take
-  # the newest. This prevents most issues with resolutions
-  # versionOlder b a -> true if b is older than a (b `older` a)
-  getNewerInMajor =
-    a: b:
-    let
-      va = a.version;
-      vb = b.version;
-      va0 = head (splitVersion va);
-      vb0 = head (splitVersion vb);
-    in
-    if isNull a then
-      b
-    else if va0 != vb0 then
-      if va0 > vb0 then b else a
-    else if versionOlder vb va then
-      a
-    else
-      b;
-  removeDups = l: attrValues (groupBy' getNewerInMajor null (getAttr "provides") l);
-
-  _resolveDeps = converge (l: removeDups (concatMap expandDeps l));
-  resolveDeps =
-    pkg:
-    let
-      deps = _resolveDeps (toList pkg);
-      namedDeps = (map (x: "${x.pname}-${x.version}") deps);
-    in
-    builtins.traceVerbose (builtins.deepSeq namedDeps namedDeps) deps;
-
-  blacklist = [
-    "intel-basekit-env"
-    "intel-basekit-getting-started"
-    "intel-hpckit-env"
-    "intel-hpckit-getting-started"
-    "intel-oneapi-advisor"
-    "intel-oneapi-common-licensing"
-    "intel-oneapi-common-oneapi-vars"
-    "intel-oneapi-common-vars"
-    "intel-oneapi-compiler-cpp-eclipse-cfg"
-    "intel-oneapi-compiler-dpcpp-eclipse-cfg"
-    "intel-oneapi-condaindex"
-    "intel-oneapi-dev-utilities-eclipse-cfg"
-    "intel-oneapi-dpcpp-ct-eclipse-cfg"
-    "intel-oneapi-eclipse-ide"
-    "intel-oneapi-hpc-toolkit-getting-started"
-    "intel-oneapi-icc-eclipse-plugin-cpp"
-    "intel-oneapi-vtune"
-    "intel-oneapi-vtune-eclipse-plugin-vtune"
-  ];
-
-  isInBlacklist = pkg: elem pkg.provides blacklist;
-  removeBlacklist = filter (e: !(isInBlacklist e));
-
-  dpkgExtractAll =
-    pname: version:
-    { srcs, deps }:
-    stdenv.mkDerivation {
-      inherit pname version srcs;
-
-      nativeBuildInputs = [ dpkg ];
-      phases = [ "installPhase" ];
-
-      passthru = { inherit deps; };
-
-      installPhase = ''
-        mkdir -p $out
-        for src in $srcs; do
-          echo "Unpacking $src"
-          dpkg -x $src $out
-        done
-      '';
-    };
-
-  apthost = "https://apt.repos.intel.com/oneapi/";
-  fetchDeb =
-    p:
-    fetchurl {
-      url = apthost + p.filename;
-      inherit (p) sha256;
-    };
-
-  buildIntel =
-    pkg:
-    pipe pkg [
-      resolveDeps
-      removeBlacklist
-      (l: {
-        srcs = map fetchDeb l;
-        deps = l;
-      })
-      (dpkgExtractAll "${pkg.provides}-extracted" pkg.version)
-    ];
-
-  findHpcKit =
-    year:
-    findMatching {
-      pname = "intel-hpckit";
-      kind = "<<";
-      version = toString (year + 1);
-    };
-  years = map toInt (attrNames components);
-
-  patchIntel = callPackage ./patch_intel.nix { };
-
-  # Version information for each hpckit. This is used to normalize the paths
-  # so that files are in $out/{bin,lib,include...} instead of all over the place
-  # in $out/opt/intel/oneapi/*/*/{...}.
-  #
-  # The most important is the compiler component, which is used to build the
-  # stdenv for the hpckit.
-  #
-  # NOTE: this have to be manually specified, so we can avoid IFD. To add a
-  # new version, add a new field with an empty attrset, (e.g. "2026" = {}; ),
-  # build hpckit_2026.unpatched and use the values from
-  # result/opt/intel/oneapi/* to populate the attrset.
-  #
-  # WARN: if there are more than one version in the folders of the unpatched
-  # components, our dependency resolution hacks have probably failed and the
-  # package set may be broken.
-  components = {
-    "2025" = {
-      ishmem = "1.4";
-      pti = "0.13";
-      tcm = "1.4";
-      umf = "0.11";
-
-      ccl = "2021.16";
-      compiler = "2025.2";
-      dal = "2025.8";
-      debugger = "2025.2";
-      dev-utilities = "2025.2";
-      dnnl = "2025.2";
-      dpcpp-ct = "2025.2";
-      dpl = "2022.9";
-      ipp = "2022.2";
-      ippcp = "2025.2";
-      mkl = "2025.2";
-      mpi = "2021.16";
-      tbb = "2022.2";
-    };
-    "2024" = {
-      tcm = "1.1";
-
-      ccl = "2021.13";
-      compiler = "2024.2";
-      dal = "2024.6";
-      debugger = "2024.2";
-      dev-utilities = "2024.2";
-      diagnostics = "2024.2";
-      dnnl = "2024.2";
-      dpcpp-ct = "2024.2";
-      dpl = "2022.6";
-      ipp = "2021.12";
-      ippcp = "2021.12";
-      mkl = "2024.2";
-      mpi = "2021.13";
-      tbb = "2021.13";
-
-      extraPackages = [
-        sqlite
-        elfutils
-      ];
-    };
-  };
-
-  replaceDots = replaceStrings [ "." ] [ "_" ];
-
-in
-lib.recurseIntoAttrs (
-  listToAttrs (
-    map (
-      year:
-      let
-        year_str = toString year;
-      in
-      {
-        name = "hpckit_${year_str}";
-        value = patchIntel {
-          unpatched = buildIntel (findHpcKit year);
-          components = components.${year_str};
-        };
-      }
-    ) years
-  )
-)
-// {
-  apt = pipe aptData [
-    (groupBy (p: replaceDots p.provides))
-    (mapAttrs (
-      _: l:
-      listToAttrs (
-        map (pkg: {
-          name = replaceDots ("v" + pkg.version);
-          value = pkg;
-        }) l
-      )
-    ))
-  ];
-
-  inherit resolveDeps patchIntel buildIntel;
-}

pkgs/intel-oneapi/patch_intel.nix

@@ -1,199 +0,0 @@
-{
-  stdenv,
-  stdenvNoCC,
-  lib,
-  symlinkJoin,
-  autoPatchelfHook,
-  wrapCCWith,
-  overrideCC,
-  gcc,
-  hwloc,
-  libelf,
-  libffi_3_3,
-  libpsm2,
-  libuuid,
-  libxml2,
-  numactl,
-  ocl-icd,
-  openssl,
-  python3,
-  rdma-core,
-  ucx,
-  zlib,
-  writeTextFile,
-}:
-
-lib.makeOverridable (
-  {
-    unpatched,
-    components ? { },
-    extraPackages ? components.extraPackages or [ ],
-  }:
-
-  let
-    inherit (builtins)
-      attrValues
-      filter
-      mapAttrs
-      removeAttrs
-      ;
-
-    __components = removeAttrs components [ "extraPackages" ];
-    _components = __components;
-    # _components = lib.traceSeqN 2 {
-    #   inherit unpatched __components;
-    #   deps = builtins.map (x: "${x.pname}-${x.version}") unpatched.deps;
-    # } __components;
-
-    wrapIntel =
-      cc:
-      let
-        targetConfig = stdenv.targetPlatform.config;
-      in
-      (wrapCCWith {
-        inherit cc;
-
-        nixSupport = {
-          cc-ldflags = [
-            "-L${gcc.cc}/lib/gcc/${targetConfig}/${gcc.version}"
-            "-L${gcc.cc.lib}/lib"
-            "-L${cc}/lib"
-          ];
-          cc-cflags = [
-            "--gcc-toolchain=${gcc.cc}"
-            "-isystem \"${cc.original}/lib/clang/*/include\""
-            "-isystem ${cc}/include"
-            "-isystem ${cc}/include/intel64"
-            "-isystem ${gcc.cc}/lib/gcc/${targetConfig}/${gcc.version}/include"
-          ];
-          libcxx-cxxflags = [
-            # "--gcc-toolchain=${gcc.cc}"
-            "-isystem ${gcc.cc}/include/c++/${gcc.version}"
-            "-isystem ${gcc.cc}/include/c++/${gcc.version}/${targetConfig}"
-          ];
-        };
-
-        extraBuildCommands = ''
-          # FIXME: We should find a better way to modify the PATH instead of using
-          # this ugly hack. See https://jungle.bsc.es/git/rarias/bscpkgs/issues/9
-          echo 'path_backup="${gcc.cc}/bin:$path_backup"' >>$out/nix-support/cc-wrapper-hook
-
-          # Disable hardening by default
-          echo "" > $out/nix-support/add-hardening.sh
-
-          wrap icx  $wrapper $ccPath/icx
-          wrap icpx $wrapper $ccPath/icpx
-          wrap ifx  $wrapper $ccPath/ifx
-
-          ln -s $out/bin/icpx $out/bin/c++
-          ln -s $out/bin/icx  $out/bin/cc
-
-          ln -s $ccPath/sycl-ls $out/bin/sycl-ls
-          ln -s $ccPath/sycl-trace $out/bin/sycl-trace
-
-          sed -i 's/.*isCxx=0/isCxx=1/' $out/bin/icpx
-
-          # Use this to detect when a compiler subprocess is called
-          # from icpx (--fsycl-host-compiler)
-          echo 'export NIX_CC_WRAPPER_INTEL=1' >>$out/nix-support/cc-wrapper-hook
-
-          # oneMath looks for sycl libraries in bin/../lib
-          ln -s ${cc}/lib $out/lib
-          ln -s ${cc}/include $out/include
-        '';
-      }).overrideAttrs
-        (old: {
-          installPhase = old.installPhase + ''
-            export named_cc="icx"
-            export named_cxx="icpx"
-            export named_fc="ifx"
-          '';
-        });
-
-  in
-  stdenvNoCC.mkDerivation (finalAttrs: {
-    pname = lib.removeSuffix "-extracted" unpatched.pname;
-    inherit (unpatched) version;
-    src = unpatched;
-
-    phases = [
-      "installPhase"
-      "fixupPhase"
-    ];
-    buildInputs = [
-      libffi_3_3
-      libelf
-      libxml2
-      hwloc
-      numactl
-      libuuid
-      libpsm2
-      zlib
-      ocl-icd
-      rdma-core
-      ucx
-      openssl
-      python3
-      stdenv.cc.cc.lib
-    ]
-    ++ extraPackages;
-
-    autoPatchelfIgnoreMissingDeps = [
-      "libhwloc.so.5"
-      "libcuda.so.1"
-      "libze_loader.so.1"
-    ];
-
-    # There are broken symlinks that go outside packages, ignore them
-    dontCheckForBrokenSymlinks = true;
-
-    nativeBuildInputs = [ autoPatchelfHook ];
-    installPhase = ''
-      cp -r $src/opt/intel/oneapi/ $out
-    '';
-
-    passthru =
-      let
-        pkgs = mapAttrs (
-          folder: version:
-          let
-            original = "${finalAttrs.finalPackage}/${folder}/${version}";
-
-            etc-vendors = writeTextFile {
-              name = "intel-ocl-icd";
-              text = "${original}/lib/libintelocl.so";
-              destination = "/etc/OpenCL/vendors/intel.icd";
-            };
-          in
-          symlinkJoin {
-            pname = "intel-${folder}";
-            inherit version;
-            paths = [ original ] ++ lib.optionals (folder == "compiler") [ etc-vendors ];
-            passthru = { inherit original; };
-          }
-        ) _components;
-      in
-      pkgs
-      // {
-        inherit unpatched;
-        pkgs = lib.recurseIntoAttrs pkgs;
-        components = _components;
-
-        # This contains all packages properly symlinked into toplevel directories
-        # in $out.
-        #
-        # NOTE: there are clashes with packages that have symlinks outside their
-        # scope (libtcm and env/vars.sh)
-        all = symlinkJoin {
-          pname = finalAttrs.finalPackage.pname + "-symlinked";
-          inherit (finalAttrs.finalPackage) version;
-          paths = filter lib.isDerivation (attrValues finalAttrs.finalPackage.pkgs);
-        };
-
-        stdenv = overrideCC stdenv finalAttrs.finalPackage.cc;
-
-        cc = wrapIntel finalAttrs.finalPackage.pkgs.compiler;
-      };
-
-  })
-)

pkgs/intel-oneapi/process.jq

@@ -1,29 +0,0 @@
-#!/usr/bin/env -S jq -f
-
-def extract_fields: {
-        pname : .Package,
-        version : .Version,
-        provides : .Package | sub("[0-9.-]*$"; ""),
-        filename : .Filename,
-        size : ."Installed-Size" | tonumber,
-        sha256 : .SHA256,
-        dependencies : .Depends,
-    } ;
-
-# parses dependencies into a list of [{.pname, .kind, .version}]
-# some dependencies do not have a version specified, in which case, kind = version = null
-#
-# example dependencies:
-# intel-oneapi-common-vars (>= 2023.0.0-25325), intel-oneapi-common-licensing-2023.0.0
-
-def split_dependencies : map(try(.dependencies |= split(",\\s?"; "")) // .dependencies |= []) ;
-
-def match_version : capture("(?<pname>[a-zA-Z0-9_\\-.]*) *(\\((?<kind>[<>=]*) *(?<version>.*)\\))?"; "") ;
-
-def parse_dependencies : map_values(.dependencies.[] |= match_version) ;
-
-def sort_version_decreasing : sort_by(.version | split("[-.]"; "") | map(tonumber)) | reverse ;
-
-map(extract_fields) | split_dependencies | parse_dependencies | sort_version_decreasing
-
-# [.[] | select(.pname == "intel-hpckit") | .version]

pkgs/intel-oneapi/toJson.awk

@@ -1,29 +0,0 @@
-#!/usr/bin/env -S awk -f
-
-BEGIN   {
-    FS=": "
-
-    prev_empty=1
-    t="  "
-
-    print "[ {"
-}
-
-!NF { # empty line, update separator so next non empty line closes the dict
-    prev_empty=1
-    t="},\n{ "
-    next # skip line (we won't match anything else)
-}
-
-{
-    printf t "\"%s\" : \"%s\"\n", $1, $2
-
-    if (prev_empty) {
-        # we were the first after a group of empty lines, following ones have to
-        # have a comma
-        prev_empty=0
-        t=", "
-    }
-}
-
-END     { print "} ]" }

pkgs/intel-oneapi/update.sh

@@ -1,11 +1,4 @@
 #!/bin/sh
 
-out_64=$(mktemp intel-api.64.XXXXXX)
+curl https://apt.repos.intel.com/oneapi/dists/all/main/binary-amd64/Packages -o amd64-packages
-out_all=$(mktemp intel-api.all.XXXXXX)
+curl https://apt.repos.intel.com/oneapi/dists/all/main/binary-all/Packages -o all-packages
-trap 'rm -f "$out_64" "$out_all"' EXIT INT HUP
-
-curl https://apt.repos.intel.com/oneapi/dists/all/main/binary-amd64/Packages -o "$out_64"
-curl https://apt.repos.intel.com/oneapi/dists/all/main/binary-all/Packages -o "$out_all"
-
-# NOTE: we use `jq -r tostring` to minify the json (3.2Mb -> 2.3Mb)
-cat "$out_64" "$out_all" | ./toJson.awk | ./process.jq | jq -r tostring >packages.json

pkgs/llvm-intel/default.nix

@@ -1,200 +0,0 @@
-{
-  stdenv,
-  lib,
-  ninja,
-  addDriverRunpath,
-  cmake,
-  emhash,
-  fetchFromGitHub,
-  khronos-ocl-icd-loader,
-  libbacktrace,
-  opencl-headers,
-  parallel-hashmap,
-  perl,
-  pkg-config,
-  python3,
-  spirv-headers,
-  spirv-tools,
-  symlinkJoin,
-  zlib,
-
-  cudaPackages,
-  enableCuda ? true,
-}:
-
-let
-  version = "6.2.1";
-  src = fetchFromGitHub {
-    owner = "intel";
-    repo = "llvm";
-    tag = "v${version}";
-    sha256 = "sha256-j8+DmGKO0qDF5JjH+DlkLKs1kBz6dS7ukwySd/Crqv0=";
-  };
-
-  pinned = {
-    inherit parallel-hashmap;
-
-    vc-intrinsics.src = fetchFromGitHub {
-      owner = "intel";
-      repo = "vc-intrinsics";
-      rev = "4e51b2467104a257c22788e343dafbdde72e28bb";
-      sha256 = "sha256-AHXeKbih4bzmcuu+tx2TeS7Ixmk54uS1vKFVxI6ZP8g=";
-    };
-
-    unified-memory-framework.src = fetchFromGitHub {
-      owner = "oneapi-src";
-      repo = "unified-memory-framework";
-      tag = "v0.11.0";
-      sha256 = "sha256-k8QdP2u1QOoeCZ6ps4sM8+1iZq/H3q0lqCfVk8mz9KI=";
-    };
-
-    ocl-headers = opencl-headers.overrideAttrs {
-      version = "2024.10.24";
-      src = fetchFromGitHub {
-        owner = "KhronosGroup";
-        repo = "OpenCL-Headers";
-        tag = "v2024.10.24";
-        sha256 = "sha256-KDlruE0IG8d+lAChxYyc6dg5XOvqCMrMyO69sdAzejA=";
-      };
-    };
-
-    ocl-icd = khronos-ocl-icd-loader;
-
-    spirv-headers = spirv-headers.overrideAttrs {
-      version = "1.4.309.0";
-      src = fetchFromGitHub {
-        owner = "KhronosGroup";
-        repo = "SPIRV-Headers";
-        tag = "vulkan-sdk-1.4.309.0";
-        sha256 = "sha256-Q1i6i5XimULuGufP6mimwDW674anAETUiIEvDQwvg5Y=";
-      };
-    };
-  };
-
-  fetchcontent_cmakeFlags = lib.mapAttrsToList (
-    name: value: (lib.cmakeFeature "FETCHCONTENT_SOURCE_DIR_${lib.toUpper name}" (toString value.src))
-  ) pinned;
-
-  # Hack to fix #include <emhash/...>
-  emhash' = symlinkJoin {
-    name = "emhash";
-    paths = [ emhash ];
-    postBuild = ''
-      pushd $out/include
-      ln -s . emhash
-      popd
-    '';
-  };
-
-in
-stdenv.mkDerivation {
-  pname = "intel-llvm";
-  inherit src version;
-
-  enableParallelBuilding = true;
-  strictDeps = true;
-
-  nativeBuildInputs = [
-    perl
-    cmake
-    ninja
-    pkg-config
-    python3
-    spirv-tools
-    addDriverRunpath
-  ]
-  ++ lib.optionals enableCuda [
-    cudaPackages.cuda_nvcc
-  ];
-
-  buildInputs = [
-    emhash'
-    libbacktrace
-    zlib
-
-    pinned.ocl-icd
-    pinned.ocl-headers
-    pinned.spirv-headers
-  ]
-  ++ lib.optionals enableCuda [
-    cudaPackages.cudatoolkit
-  ];
-
-  patches = [ ./fix-ur.patch ]; # Has been fixed in next release
-
-  preBuild = ''
-    chmod -R u+w /build/source
-  '';
-
-  cmakeDir = "../llvm";
-
-  cmakeFlags =
-    let
-      cmakeList = name: l: lib.cmakeOptionType "list" name (builtins.concatStringsSep ";" l);
-
-      LLVM_EXTERNAL_PROJECTS = [
-        "sycl"
-        "llvm-spirv"
-        "opencl"
-        "xpti"
-        "xptifw"
-        "compiler-rt"
-        "sycl-jit"
-      ]
-      ++ lib.optionals enableCuda [
-        "libclc"
-      ];
-    in
-    [
-      (lib.cmakeBool "LLVM_ENABLE_ASSERTIONS" true)
-
-      (cmakeList "LLVM_TARGETS_TO_BUILD" (
-        [
-          "host"
-          "SPIRV"
-        ]
-        ++ lib.optionals enableCuda [ "NVPTX" ]
-      ))
-      (cmakeList "LLVM_EXTERNAL_PROJECTS" LLVM_EXTERNAL_PROJECTS)
-      (cmakeList "LLVM_ENABLE_PROJECTS" ([ "clang" ] ++ LLVM_EXTERNAL_PROJECTS))
-
-      (lib.cmakeBool "UR_USE_EXTERNAL_UMF" false)
-      (lib.cmakeOptionType "path" "UR_OPENCL_INCLUDE_DIR" (toString pinned.ocl-headers))
-      (lib.cmakeOptionType "path" "UR_OPENCL_ICD_LOADER_LIBRARY" (toString pinned.ocl-icd))
-      (lib.cmakeFeature "UR_OPENCL_ICD_LOADER_LIBRARY" (toString pinned.ocl-icd))
-
-      (lib.cmakeBool "BUILD_SHARED_LIBS" false)
-      (lib.cmakeBool "LLVM_BUILD_TOOLS" true)
-      (lib.cmakeBool "LLVM_ENABLE_ZSTD" true)
-      (lib.cmakeBool "LLVM_USE_STATIC_ZSTD" true)
-      (lib.cmakeBool "LLVM_ENABLE_DOXYGEN" false)
-      (lib.cmakeBool "LLVM_ENABLE_LLD" false)
-      (lib.cmakeBool "LLVM_ENABLE_SPHINX" false)
-      (lib.cmakeBool "LLVM_SPIRV_ENABLE_LIBSPIRV_DIS" false)
-      (lib.cmakeBool "SYCL_ENABLE_WERROR" false)
-      (lib.cmakeBool "SYCL_INCLUDE_TESTS" false)
-      (lib.cmakeBool "SYCL_ENABLE_EXTENSION_JIT" true)
-      (lib.cmakeBool "SYCL_ENABLE_MAJOR_RELEASE_PREVIEW_LIB" false)
-      (lib.cmakeBool "SYCL_ENABLE_XPTI_TRACING" true)
-      (lib.cmakeBool "XPTI_ENABLE_WERROR" false)
-
-      (cmakeList "SYCL_ENABLE_BACKENDS" ([ "opencl" ] ++ lib.optionals enableCuda [ "cuda" ]))
-    ]
-    ++ fetchcontent_cmakeFlags
-    ++ lib.optionals enableCuda [
-      (lib.cmakeOptionType "list" "LIBCLC_TARGETS_TO_BUILD" "nvptx64--nvidiacl")
-      (lib.cmakeBool "LIBCLC_GENERATE_REMANGLED_VARIANTS" true)
-      (lib.cmakeBool "LIBCLC_NATIVECPU_HOST_TARGET" false)
-    ];
-
-  meta = {
-    homepage = "https://github.com/intel/llvm";
-    description = "Intel staging area for llvm.org contribution";
-    maintainers = with lib.maintainers.bsc; [ abonerib ];
-    platforms = lib.platforms.linux;
-    license = [
-      lib.licenses.asl20
-      lib.licenses.llvm-exception
-    ];
-  };
-}

pkgs/llvm-intel/fix-ur.patch

@@ -1,23 +0,0 @@
-diff --git a/unified-runtime/source/adapters/cuda/CMakeLists.txt b/unified-runtime/source/adapters/cuda/CMakeLists.txt
-index a8401c71a..2ab363926 100644
---- a/unified-runtime/source/adapters/cuda/CMakeLists.txt
-+++ b/unified-runtime/source/adapters/cuda/CMakeLists.txt
-@@ -62,14 +62,14 @@ add_library(cudadrv SHARED IMPORTED GLOBAL)
- if (WIN32)
-   set_target_properties(
-     cudadrv PROPERTIES 
--      IMPORTED_IMPLIB               ${CUDA_cuda_driver_LIBRARY}
--      INTERFACE_INCLUDE_DIRECTORIES ${CUDAToolkit_INCLUDE_DIRS}
-+      IMPORTED_IMPLIB               "${CUDA_cuda_driver_LIBRARY}"
-+      INTERFACE_INCLUDE_DIRECTORIES "${CUDAToolkit_INCLUDE_DIRS}"
-   )
- else()
-   set_target_properties(
-     cudadrv PROPERTIES 
--      IMPORTED_LOCATION             ${CUDA_cuda_driver_LIBRARY}
--      INTERFACE_INCLUDE_DIRECTORIES ${CUDAToolkit_INCLUDE_DIRS}
-+      IMPORTED_LOCATION             "${CUDA_cuda_driver_LIBRARY}"
-+      INTERFACE_INCLUDE_DIRECTORIES "${CUDAToolkit_INCLUDE_DIRS}"
-   )
- endif()
- 

pkgs/llvm-ompss2/default.nix

@@ -3,7 +3,6 @@
 , lib
 , gcc
 , clangOmpss2Unwrapped
-, writeShellScript
 , openmp ? null
 , wrapCCWith
 , llvmPackages_latest
@@ -38,7 +37,10 @@ let
   inherit gcc;
   cc = clangOmpss2Unwrapped;
   gccVersion = with versions; let v = gcc.version; in concatStringsSep "." [(major v) (minor v) (patch v)];
-
+in wrapCCWith {
+  inherit cc bintools;
+  # extraPackages adds packages to depsTargetTargetPropagated
+  extraPackages = optional (openmp != null) openmp;
   extraBuildCommands = ''
     echo "-target ${targetConfig}" >> $out/nix-support/cc-cflags
     echo "-B${gcc.cc}/lib/gcc/${targetConfig}/${gccVersion}" >> $out/nix-support/cc-cflags
@@ -55,50 +57,14 @@ let
     echo "--gcc-toolchain=${gcc}" >> $out/nix-support/cc-cflags
 
     wrap clang++  $wrapper $ccPath/clang++
+
+  '' + optionalString (openmp != null) ''
+    echo "export OPENMP_RUNTIME=${ompname}" >> $out/nix-support/cc-wrapper-hook
+  '' + optionalString (ompss2rt != null) ''
+    echo "export OMPSS2_RUNTIME=${rtname}" >> $out/nix-support/cc-wrapper-hook
+    echo "export ${homevar}=${ompss2rt}"   >> $out/nix-support/cc-wrapper-hook
+  '' + optionalString (ompss2rt != null && ompss2rt.pname == "nodes") ''
+    echo "export NOSV_HOME=${ompss2rt.nosv}" >> $out/nix-support/cc-wrapper-hook
   '';
+}
 
-  envExports = lib.optionalString (openmp != null) ''
-      echo "export OPENMP_RUNTIME=${ompname}" >> $out/nix-support/cc-wrapper-hook
-    '' + optionalString (ompss2rt != null) ''
-      echo "export OMPSS2_RUNTIME=${rtname}" >> $out/nix-support/cc-wrapper-hook
-      echo "export ${homevar}=${ompss2rt}"   >> $out/nix-support/cc-wrapper-hook
-    '' + optionalString (ompss2rt != null && ompss2rt.pname == "nodes") ''
-      echo "export NOSV_HOME=${ompss2rt.nosv}" >> $out/nix-support/cc-wrapper-hook
-    '';
-
-  extraPackages = optional (openmp != null) openmp;
-
-  wrappedCC = wrapCCWith {
-    # extraPackages adds packages to depsTargetTargetPropagated
-    inherit cc bintools extraPackages;
-    extraBuildCommands = extraBuildCommands + envExports;
-  };
-
-  resetIntelCCFlags = let tconf = builtins.replaceStrings ["-"] ["_"] targetConfig;
-  in writeShellScript "remove-intel.sh" ''
-    if [ "''${NIX_CC_WRAPPER_INTEL:-0}" = 1 ]; then
-      unset NIX_CFLAGS_COMPILE_${tconf}
-      unset NIX_CC_WRAPPER_FLAGS_SET_${tconf}
-
-      if (( "''${NIX_DEBUG:-0}" >= 1 )); then
-        echo "ompss2: cleaned NIX_CFLAGS_COMPILE_${tconf} (invokation from intel compiler detected)"
-      fi
-    fi
-  '';
-
-  intelExtraBuildCommands = ''
-    sed -i 's|# Flirting.*|source ${resetIntelCCFlags}\n\n&|' $out/bin/clang
-    sed -i 's|# Flirting.*|source ${resetIntelCCFlags}\n\n&|' $out/bin/clang++
-  '';
-
-  wrappedCCIntel = wrapCCWith {
-    inherit cc bintools extraPackages;
-    # extraPackages adds packages to depsTargetTargetPropagated
-    extraBuildCommands = intelExtraBuildCommands + envExports;
-  };
-
-in wrappedCC.overrideAttrs (oldAttrs: {
-    passthru = oldAttrs.passthru // {
-      forIcpx = wrappedCCIntel;
-    };
-  })

pkgs/nanos6/check-papi-version-with-pkgconfig.patch

@@ -0,0 +1,67 @@
+diff --git a/m4/papi.m4 b/m4/papi.m4
+--- a/m4/papi.m4
++++ b/m4/papi.m4
+@@ -24,12 +24,13 @@ AC_DEFUN([AC_CHECK_PAPI],
+ 		else
+ 			PKG_CHECK_MODULES(
+ 				[papi],
+-				[papi],
++				[papi >= 5.6.0],
+ 				[
+ 					AC_MSG_CHECKING([the PAPI installation prefix])
+ 					AC_MSG_RESULT([retrieved from pkg-config])
+ 					papi_CPPFLAGS="${papi_CFLAGS}"
+ 					ac_use_papi=yes
++					ac_papi_version_correct=yes
+ 				], [
+ 					AC_MSG_CHECKING([the PAPI installation prefix])
+ 					AC_MSG_RESULT([not available])
+@@ -67,27 +68,29 @@ AC_DEFUN([AC_CHECK_PAPI],
+ 		fi
+ 
+ 		if test x"${ac_use_papi}" = x"yes" ; then
+-			if test x"${ac_cv_use_papi_prefix}" != x"" ; then
+-				papiBinary=${ac_cv_use_papi_prefix}/bin/papi_version
+-			else
+-				papiBinary=papi_version
+-			fi
+-			papiVersion=`$papiBinary | sed 's/[[^0-9.]]*\([[0-9.]]*\).*/\1/'`
++			if test x"${ac_papi_version_correct}" != x"yes" ; then
++				if test x"${ac_cv_use_papi_prefix}" != x"" ; then
++					papiBinary=${ac_cv_use_papi_prefix}/bin/papi_version
++				else
++					papiBinary=papi_version
++				fi
++				papiVersion=`$papiBinary | sed 's/[[^0-9.]]*\([[0-9.]]*\).*/\1/'`
+ 
+-			AX_COMPARE_VERSION(
+-				[[${papiVersion}]],
+-				[[ge]],
+-				[[5.6.0]],
+-				[[ac_papi_version_correct=yes]],
+-				[[ac_papi_version_correct=no]]
+-			)
++				AX_COMPARE_VERSION(
++					[[${papiVersion}]],
++					[[ge]],
++					[[5.6.0]],
++					[[ac_papi_version_correct=yes]],
++					[[ac_papi_version_correct=no]]
++				)
+ 
+-			if test x"${ac_papi_version_correct}" != x"yes" ; then
+-				AC_MSG_ERROR([PAPI version must be >= 5.6.0.])
+-				ac_use_papi=no
+-			else
+-				AC_MSG_CHECKING([if the PAPI version >= 5.6.0.])
+-				AC_MSG_RESULT([${ac_papi_version_correct}])
++				if test x"${ac_papi_version_correct}" != x"yes" ; then
++					AC_MSG_ERROR([PAPI version must be >= 5.6.0.])
++					ac_use_papi=no
++				else
++					AC_MSG_CHECKING([if the PAPI version >= 5.6.0.])
++					AC_MSG_RESULT([${ac_papi_version_correct}])
++				fi
+ 			fi
+ 		fi
+ 

pkgs/nanos6/default.nix

@@ -80,8 +80,7 @@ in
       (optional enableGlibcxxDebug "CXXFLAGS=-D_GLIBCXX_DEBUG") ++
       # Most nanos6 api symbols are resolved at runtime, so prefer
       # ifunc by default
-      (optional isCross "--with-symbol-resolution=ifunc") ++
+      (optional isCross "--with-symbol-resolution=ifunc");
-      (optional enablePapi "--with-papi=${papi}");
 
     postConfigure = lib.optionalString (!enableDebug) ''
       # Disable debug
@@ -97,6 +96,7 @@ in
     separateDebugInfo = true;
 
     strictDeps = true;
+    patches = [ ./check-papi-version-with-pkgconfig.patch ];
 
     nativeBuildInputs = [
       autoconf

pkgs/nosv/check-papi-version-with-pkgconfig.patch

@@ -0,0 +1,68 @@
+diff --git a/m4/papi.m4 b/m4/papi.m4
+index de905848..fa3db9a1 100644
+--- a/m4/papi.m4
++++ b/m4/papi.m4
+@@ -24,12 +24,13 @@ AC_DEFUN([AC_CHECK_PAPI],
+ 		else
+ 			PKG_CHECK_MODULES(
+ 				[papi],
+-				[papi],
++				[papi >= 5.6.0],
+ 				[
+ 					AC_MSG_CHECKING([the PAPI installation prefix])
+ 					AC_MSG_RESULT([retrieved from pkg-config])
+ 					papi_CFLAGS="${papi_CFLAGS}"
+ 					ac_use_papi=yes
++					ac_papi_version_correct=yes
+ 				], [
+ 					AC_MSG_CHECKING([the PAPI installation prefix])
+ 					AC_MSG_RESULT([not available])
+@@ -67,27 +68,29 @@ AC_DEFUN([AC_CHECK_PAPI],
+ 		fi
+ 
+ 		if test x"${ac_use_papi}" = x"yes" ; then
+-			if test x"${ac_cv_use_papi_prefix}" != x"" ; then
+-				papiBinary=${ac_cv_use_papi_prefix}/bin/papi_version
+-			else
+-				papiBinary=papi_version
+-			fi
+-			papiVersion=`$papiBinary | sed 's/[[^0-9.]]*\([[0-9.]]*\).*/\1/'`
++			if test x"${ac_papi_version_correct}" != x"yes" ; then
++				if test x"${ac_cv_use_papi_prefix}" != x"" ; then
++					papiBinary=${ac_cv_use_papi_prefix}/bin/papi_version
++				else
++					papiBinary=papi_version
++				fi
++				papiVersion=`$papiBinary | sed 's/[[^0-9.]]*\([[0-9.]]*\).*/\1/'`
+ 
+-			AX_COMPARE_VERSION(
+-				[[${papiVersion}]],
+-				[[ge]],
+-				[[5.6.0]],
+-				[[ac_papi_version_correct=yes]],
+-				[[ac_papi_version_correct=no]]
+-			)
++				AX_COMPARE_VERSION(
++					[[${papiVersion}]],
++					[[ge]],
++					[[5.6.0]],
++					[[ac_papi_version_correct=yes]],
++					[[ac_papi_version_correct=no]]
++				)
+ 
+-			if test x"${ac_papi_version_correct}" != x"yes" ; then
+-				AC_MSG_ERROR([PAPI version must be >= 5.6.0.])
+-				ac_use_papi=no
+-			else
+-				AC_MSG_CHECKING([if the PAPI version >= 5.6.0.])
+-				AC_MSG_RESULT([${ac_papi_version_correct}])
++				if test x"${ac_papi_version_correct}" != x"yes" ; then
++					AC_MSG_ERROR([PAPI version must be >= 5.6.0.])
++					ac_use_papi=no
++				else
++					AC_MSG_CHECKING([if the PAPI version >= 5.6.0.])
++					AC_MSG_RESULT([${ac_papi_version_correct}])
++				fi
+ 			fi
+ 		fi
+ 

pkgs/nosv/default.nix

@@ -47,10 +47,11 @@ in
     dontStrip = true;
     separateDebugInfo = true;
     strictDeps = true;
+    patches = [ ./check-papi-version-with-pkgconfig.patch ];
     configureFlags = [
       "--with-ovni=${ovni}"
       "CACHELINE_WIDTH=${toString cacheline}"
-    ] ++ lib.optionals enablePapi [ "--with-papi=${papi}" ];
+    ];
     nativeBuildInputs = [
       autoreconfHook
       pkg-config
@@ -60,7 +61,6 @@ in
       hwloc
       ovni
     ] ++ lib.optionals enablePapi [ papi ];
-    patches = [ ./fix-papi.patch ];
 
     meta = {
       homepage = "https://gitlab.bsc.es/nos-v/nos-v";

pkgs/nosv/fix-papi.patch

@@ -1,136 +0,0 @@
-Commit ID: c09633f172ce4075e0a05a33f6dcbe8e03e1202a
-Change ID: onmwypnnrysktutwsvotqovzponvwrxs
-Bookmarks: fix/papi fix/papi@git fix/papi@origin
-Author   : Aleix Boné <aleix.boneribo@bsc.es> (2025-12-10 11:14:14)
-Committer: Aleix Boné <aleix.boneribo@bsc.es> (2025-12-12 12:56:48)
-
-    Improve PAPI m4 module for cross compilation
-
-diff --git a/m4/papi.m4 b/m4/papi.m4
-index de90584870..8398f856f5 100644
---- a/m4/papi.m4
-+++ b/m4/papi.m4
-@@ -1,6 +1,6 @@
- #	This file is part of Nanos6 and is licensed under the terms contained in the COPYING file.
- #
--#	Copyright (C) 2021-2022 Barcelona Supercomputing Center (BSC)
-+#	Copyright (C) 2021-2025 Barcelona Supercomputing Center (BSC)
- 
- AC_DEFUN([AC_CHECK_PAPI],
- 	[
-@@ -8,34 +8,38 @@
- 			[papi],
- 			[AS_HELP_STRING([--with-papi=prefix], [specify the installation prefix of PAPI])],
- 			[ ac_cv_use_papi_prefix=$withval ],
--			[ ac_cv_use_papi_prefix="" ]
-+			[ ac_cv_use_papi_prefix="check" ]
- 		)
- 
- 		if test x"${ac_cv_use_papi_prefix}" = x"no"; then
- 			AC_MSG_CHECKING([the PAPI installation prefix])
- 			AC_MSG_RESULT([${ac_cv_use_papi_prefix}])
- 			ac_use_papi=no
--		elif test x"${ac_cv_use_papi_prefix}" != x"" ; then
--			AC_MSG_CHECKING([the PAPI installation prefix])
--			AC_MSG_RESULT([${ac_cv_use_papi_prefix}])
--			papi_LIBS="-L${ac_cv_use_papi_prefix}/lib -lpapi -Wl,-rpath,${ac_cv_use_papi_prefix}/lib"
--			papi_CFLAGS="-I$ac_cv_use_papi_prefix/include"
--			ac_use_papi=yes
--		else
-+		elif test x"${ac_cv_use_papi_prefix}" = x""; then
-+			AC_MSG_RESULT([invalid prefix])
-+			AC_MSG_ERROR([papi prefix specified but empty])
-+		elif test x"${ac_cv_use_papi_prefix}" = x"yes" -o x"${ac_cv_use_papi_prefix}" = x"check"; then
- 			PKG_CHECK_MODULES(
- 				[papi],
--				[papi],
-+				[papi >= 5.6.0],
- 				[
- 					AC_MSG_CHECKING([the PAPI installation prefix])
- 					AC_MSG_RESULT([retrieved from pkg-config])
- 					papi_CFLAGS="${papi_CFLAGS}"
- 					ac_use_papi=yes
-+					ac_papi_version_correct=yes
- 				], [
- 					AC_MSG_CHECKING([the PAPI installation prefix])
- 					AC_MSG_RESULT([not available])
- 					ac_use_papi=no
- 				]
- 			)
-+		else
-+			AC_MSG_CHECKING([the PAPI installation prefix])
-+			AC_MSG_RESULT([${ac_cv_use_papi_prefix}])
-+			papi_LIBS="-L${ac_cv_use_papi_prefix}/lib -lpapi -Wl,-rpath,${ac_cv_use_papi_prefix}/lib"
-+			papi_CFLAGS="-I$ac_cv_use_papi_prefix/include"
-+			ac_use_papi=yes
- 		fi
- 
- 		if test x"${ac_use_papi}" = x"yes" ; then
-@@ -53,10 +57,10 @@
- 					ac_use_papi=yes
- 				],
- 				[
--					if test x"${ac_cv_use_papi_prefix}" != x"" ; then
--						AC_MSG_ERROR([PAPI cannot be found.])
-+					if test x"${ac_cv_use_papi_prefix}" = x"yes" ; then
-+						AC_MSG_ERROR([PAPI >= 5.6.0 cannot be found.])
- 					else
--						AC_MSG_WARN([PAPI cannot be found.])
-+						AC_MSG_WARN([PAPI >= 5.6.0 not available.])
- 					fi
- 					ac_use_papi=no
- 				]
-@@ -64,30 +68,38 @@
- 
- 			CFLAGS="${ac_save_CFLAGS}"
- 			LIBS="${ac_save_LIBS}"
-+		elif test x"${ac_cv_use_papi_prefix}" = x"yes" ; then
-+			AC_MSG_ERROR([PAPI >= 5.6.0 cannot be found.])
- 		fi
- 
--		if test x"${ac_use_papi}" = x"yes" ; then
--			if test x"${ac_cv_use_papi_prefix}" != x"" ; then
-+		if test x"${ac_use_papi}" = x"yes" -a x"${ac_papi_version_correct}" != x"yes" ; then
-+			if test x"${ac_cv_use_papi_prefix}" != x"yes" -a x"${ac_cv_use_papi_prefix}" != x"check" ; then
- 				papiBinary=${ac_cv_use_papi_prefix}/bin/papi_version
- 			else
- 				papiBinary=papi_version
- 			fi
--			papiVersion=`$papiBinary | sed 's/[[^0-9.]]*\([[0-9.]]*\).*/\1/'`
- 
--			AX_COMPARE_VERSION(
--				[[${papiVersion}]],
--				[[ge]],
--				[[5.6.0]],
--				[[ac_papi_version_correct=yes]],
--				[[ac_papi_version_correct=no]]
--			)
- 
--			if test x"${ac_papi_version_correct}" != x"yes" ; then
--				AC_MSG_ERROR([PAPI version must be >= 5.6.0.])
--				ac_use_papi=no
-+			if test x"$cross_compiling" = x"yes" ; then
-+				AC_MSG_WARN([Cross-compiling detected, skipping PAPI version check])
- 			else
--				AC_MSG_CHECKING([if the PAPI version >= 5.6.0.])
--				AC_MSG_RESULT([${ac_papi_version_correct}])
-+				papiVersion=`$papiBinary | sed 's/[[^0-9.]]*\([[0-9.]]*\).*/\1/'`
-+
-+				AX_COMPARE_VERSION(
-+					[[${papiVersion}]],
-+					[[ge]],
-+					[[5.6.0]],
-+					[[ac_papi_version_correct=yes]],
-+					[[ac_papi_version_correct=no]]
-+				)
-+
-+				if test x"${ac_papi_version_correct}" != x"yes" ; then
-+					AC_MSG_ERROR([PAPI version must be >= 5.6.0.])
-+					ac_use_papi=no
-+				else
-+					AC_MSG_CHECKING([if the PAPI version >= 5.6.0.])
-+					AC_MSG_RESULT([${ac_papi_version_correct}])
-+				fi
- 			fi
- 		fi
- 

pkgs/onemath/default.nix

@@ -1,91 +0,0 @@
-{
-  lib,
-  fetchFromGitHub,
-  cmake,
-  withCFlags,
-  intelPackages,
-
-  mklSupport ? true,
-
-  config,
-
-  cudaSupport ? config.cudaSupport,
-  cudaPackages ? { },
-
-  rocmSupport ? config.rocmSupport,
-  hipTargets ? null, # only one target at a time supported
-  rocmPackages ? { },
-}:
-
-let
-  # rocmSupport is not enough, we need a specific target
-  enableHip = rocmSupport && hipTargets != null;
-
-  stdenv = withCFlags (lib.optionals cudaSupport [
-    "--cuda-path=${cudaPackages.cudatoolkit}"
-  ]) intelPackages.stdenv;
-in
-
-# at least one backend has to be enabled
-assert mklSupport || cudaSupport || enableHip;
-
-stdenv.mkDerivation rec {
-  pname = "oneMath";
-  version = "0.8";
-
-  src = fetchFromGitHub {
-    owner = "uxlfoundation";
-    repo = "oneMath";
-    rev = "v${version}";
-    sha256 = "sha256-xK8lKI3oqKlx3xtvdScpMq+HXAuoYCP0BZdkEqnJP5o=";
-  };
-
-  cmakeFlags = [
-    (lib.cmakeBool "ENABLE_MKLCPU_BACKEND" mklSupport)
-    (lib.cmakeBool "ENABLE_MKLGPU_BACKEND" mklSupport)
-
-    (lib.cmakeBool "ENABLE_CUBLAS_BACKEND" cudaSupport)
-    (lib.cmakeBool "ENABLE_CUFFT_BACKEND" cudaSupport)
-    (lib.cmakeBool "ENABLE_CURAND_BACKEND" cudaSupport)
-    (lib.cmakeBool "ENABLE_CUSOLVER_BACKEND" cudaSupport)
-    (lib.cmakeBool "ENABLE_CUSPARSE_BACKEND" cudaSupport)
-
-    (lib.cmakeBool "ENABLE_ROCBLAS_BACKEND" enableHip)
-    (lib.cmakeBool "ENABLE_ROCFFT_BACKEND" enableHip)
-    (lib.cmakeBool "ENABLE_ROCSOLVER_BACKEND" enableHip)
-    (lib.cmakeBool "ENABLE_ROCRAND_BACKEND" enableHip)
-    (lib.cmakeBool "ENABLE_ROCSPARSE_BACKEND" enableHip)
-
-    (lib.cmakeBool "BUILD_FUNCTIONAL_TESTS" false)
-    (lib.cmakeBool "BUILD_EXAMPLES" false)
-  ]
-  ++ lib.optionals enableHip [
-    (lib.cmakeFeature "HIP_TARGETS" hipTargets)
-  ];
-
-  nativeBuildInputs = [ cmake ];
-  buildInputs =
-    lib.optionals (mklSupport) [
-      intelPackages.mkl
-      intelPackages.tbb
-    ]
-    ++ lib.optionals (enableHip) [
-      rocmPackages.rocmPath
-      rocmPackages.rocblas
-      rocmPackages.rocfft
-      rocmPackages.rocsolver
-      rocmPackages.rocrand
-      rocmPackages.rocsparse
-    ]
-    ++ lib.optionals (cudaSupport) [
-      (lib.getDev cudaPackages.cuda_cudart)
-      cudaPackages.cudatoolkit
-
-      cudaPackages.libcublas
-      cudaPackages.libcurand
-      cudaPackages.libcufft
-      cudaPackages.libcusparse
-      cudaPackages.libcusolver
-    ];
-
-}

pkgs/pertalde/default.nix

@@ -1,47 +0,0 @@
-{
-  lib,
-  python3,
-  fetchPypi,
-  cargo,
-  rustPlatform,
-  rustc,
-}:
-
-let
-  pname = "pertalde";
-  version = "0.1.4";
-
-  src = fetchPypi {
-    inherit pname version;
-    hash = "sha256-KdS5yNYR+8z81hMBTl9oNiLi17cVLyoZBNNR88T/gOY=";
-  };
-in
-python3.pkgs.buildPythonApplication {
-  inherit pname version src;
-  pyproject = true;
-  strictDeps = true;
-
-  cargoDeps = rustPlatform.fetchCargoVendor {
-    inherit src;
-    name = "${pname}-${version}";
-    hash = "sha256-dQ8EKlYZq+Urtb+0zxRi/Vh/ormIGCNKHy/9entyb7g=";
-  };
-
-  # error[E0554]: `#![feature]` may not be used on the stable release channel
-  env.RUSTC_BOOTSTRAP = true;
-
-  build-system = [
-    cargo
-    rustPlatform.cargoSetupHook
-    rustPlatform.maturinBuildHook
-    rustc
-  ];
-
-  meta = {
-    description = "Some command-line utilities on paraver traces";
-    homepage = "https://pypi.org/project/pertalde/";
-    license = lib.licenses.gpl3Only;
-    maintainers = with lib.maintainers.bsc; [ abonerib ];
-    mainProgram = "ptd";
-  };
-}

pkgs/pocl/0001-cmake-do-not-use-suffix.patch

@@ -1,26 +0,0 @@
-From ccf301659caac9b5e973ba1f2d32352acf617a98 Mon Sep 17 00:00:00 2001
-From: =?UTF-8?q?Aleix=20Bon=C3=A9?= <aleix.boneribo@bsc.es>
-Date: Tue, 2 Jul 2024 16:45:05 +0200
-Subject: [PATCH] cmake: do not use suffix
-
----
- cmake/LLVM.cmake                              |  3 ++
- 1 files changed, 3 insertions(+)
-
-diff --git a/cmake/LLVM.cmake b/cmake/LLVM.cmake
-index f4dbda065..e29144dce 100644
---- a/cmake/LLVM.cmake
-+++ b/cmake/LLVM.cmake
-@@ -65,6 +65,9 @@ else()
-     message(WARNING "Cannot determine llvm binary suffix from ${LLVM_CONFIG}")
-   endif()
-   message(STATUS "LLVM binaries suffix : ${LLVM_BINARY_SUFFIX}")
-+
-+  # We don't want suffixes in nix
-+  set(LLVM_BINARY_SUFFIX "")
- endif()
- 
- get_filename_component(LLVM_CONFIG_LOCATION "${LLVM_CONFIG}" DIRECTORY)
--- 
-2.45.1
-

pkgs/pocl/0001-cmake-native-build-tools.patch

@@ -1,33 +0,0 @@
-From f24b456c50f587b05cc8f2699c94d8cdefc5b13e Mon Sep 17 00:00:00 2001
-From: =?UTF-8?q?Aleix=20Bon=C3=A9?= <aleix.boneribo@bsc.es>
-Date: Tue, 2 Jul 2024 17:11:11 +0200
-Subject: [PATCH] cmake: native build tools
-
----
- cmake/LLVM.cmake                    |   7 +-
- 1 files changed, 6 insertions(+), 1 deletion(-)
-
-diff --git a/cmake/LLVM.cmake b/cmake/LLVM.cmake
-index e29144dce..b9f14ce6a 100644
---- a/cmake/LLVM.cmake
-+++ b/cmake/LLVM.cmake
-@@ -269,10 +269,15 @@ endforeach()
- 
- ####################################################################
- 
-+if(DEFINED LLVM_NATIVE_TOOL_DIR)
-+  set(TOOL_DIR "${LLVM_NATIVE_TOOL_DIR}")
-+  message(STATUS "TOOL_DIR=${TOOL_DIR}")
-+endif()
-+
- macro(find_program_or_die OUTPUT_VAR PROG_NAME DOCSTRING)
-   find_program(${OUTPUT_VAR}
-     NAMES "${PROG_NAME}${LLVM_BINARY_SUFFIX}${CMAKE_EXECUTABLE_SUFFIX}"
--    HINTS "${LLVM_BINDIR}" "${LLVM_CONFIG_LOCATION}"
-+    HINTS "${TOOL_DIR}" "${LLVM_BINDIR}" "${LLVM_CONFIG_LOCATION}"
-     DOC "${DOCSTRING}"
-     NO_CMAKE_PATH
-     NO_CMAKE_ENVIRONMENT_PATH
--- 
-2.45.1
-

pkgs/pocl/0001-cmake-use-clang-from-cmake-variable.patch

@@ -1,48 +0,0 @@
-From 4688b5ce895761c884ae15fc0234ed8d623b988b Mon Sep 17 00:00:00 2001
-From: =?UTF-8?q?Aleix=20Bon=C3=A9?= <aleix.boneribo@bsc.es>
-Date: Tue, 2 Jul 2024 15:41:47 +0200
-Subject: [PATCH] cmake: use clang from cmake variable
-
----
- cmake/LLVM.cmake | 22 ++++++++++++++++++++--
- 1 file changed, 20 insertions(+), 2 deletions(-)
-
-diff --git a/cmake/LLVM.cmake b/cmake/LLVM.cmake
-index 71b786dc7..f4dbda065 100644
---- a/cmake/LLVM.cmake
-+++ b/cmake/LLVM.cmake
-@@ -281,11 +281,29 @@ macro(find_program_or_die OUTPUT_VAR PROG_NAME DOCSTRING)
-   endif()
- endmacro()
- 
--find_program_or_die( CLANG "clang" "clang binary")
-+# -DCMAKE_C_COMPILER=riscv64-unknown-linux-gnu-clang -DCMAKE_CXX_COMPILER=riscv64-unknown-linux-gnu-clang++
-+
-+# if(DEFINED CLANG_EXECUTABLE)
-+if(DEFINED CMAKE_C_COMPILER)
-+  # set(CLANG "${CLANG_EXECUTABLE}")
-+  set(CLANG "${CMAKE_C_COMPILER}")
-+  message(STATUS "Using CLANG_EXECUTABLE: ${CLANG}")
-+else()
-+  find_program_or_die( CLANG "clang" "clang binary")
-+endif()
- execute_process(COMMAND "${CLANG}" "--version" OUTPUT_VARIABLE LLVM_CLANG_VERSION RESULT_VARIABLE CLANG_RES)
-+
- # TODO this should be optional
--find_program_or_die( CLANGXX "clang++" "clang++ binary")
-+# if(DEFINED CLANGXX_EXECUTABLE)
-+if(DEFINED CMAKE_CXX_COMPILER)
-+  # set(CLANGXX "${CLANGXX_EXECUTABLE}")
-+  set(CLANGXX "${CMAKE_CXX_COMPILER}")
-+  message(STATUS "Using CLANGXX_EXECUTABLE: ${CLANGXX}")
-+else()
-+  find_program_or_die( CLANGXX "clang++" "clang++ binary")
-+endif()
- execute_process(COMMAND "${CLANGXX}" "--version" OUTPUT_VARIABLE LLVM_CLANGXX_VERSION RESULT_VARIABLE CLANGXX_RES)
-+
- if(CLANGXX_RES OR CLANG_RES)
-   message(FATAL_ERROR "Failed running clang/clang++ --version")
- endif()
--- 
-2.45.1
-

pkgs/pocl/default.nix

@@ -1,255 +0,0 @@
-{
-  lib,
-  llvmPackages,
-  ninja,
-  cmake,
-  hwloc,
-  ocl-icd,
-  opencl-headers,
-  getconf,
-  pkg-config,
-  spirv-llvm-translator,
-  spirv-tools,
-  libxml2, # required for statically linked llvm
-  python3,
-  writableTmpDirAsHomeHook,
-  writeText,
-  runCommand,
-  opencl-cts,
-
-  fetchFromGitHub,
-
-  useGit ? false,
-  gitUrl ? "git@gitlab-internal.bsc.es:task-awareness/pocl/pocl.git",
-  gitBranch ? "new-device",
-  gitCommit ? "dd10c2221b31223cbb796182df6a07f11c7541f5",
-
-  staticLLVM ? true,
-  enableICD ? true,
-  enableSPIRV ? true,
-  enableHWLOC ? true,
-  enableRemoteServer ? false,
-  enableRemoteClient ? false,
-  enableDistroVariants ? false,
-
-  lttng-ust,
-  enableLTTNG ? false,
-
-  onetbb,
-  enableTBB ? false,
-
-  nosv ? null,
-  ovni ? null,
-  enableNOSV ? useGit,
-  enableOVNI ? useGit,
-
-  buildPackages,
-  targetPackages,
-  nix-update-script,
-}:
-
-assert (enableNOSV || enableOVNI) -> useGit;
-
-let
-
-  release = rec {
-    version = "7.1";
-    src = fetchFromGitHub {
-      owner = "pocl";
-      repo = "pocl";
-      tag = "v${version}";
-      hash = "sha256-bS6vTIjLO7YLs7qYLKW0cYYbEJ/hRS/+IjjAKbkj8ac=";
-    };
-  };
-
-  git = rec {
-    version = src.shortRev;
-    src = builtins.fetchGit {
-      url = gitUrl;
-      ref = gitBranch;
-      rev = gitCommit;
-    };
-  };
-
-  source = if (useGit) then git else release;
-
-  stdenv = llvmPackages.stdenv;
-
-  buildLlvmPackages = buildPackages.llvmPackages;
-
-  isCross = stdenv.hostPlatform != stdenv.buildPlatform;
-
-  featureList = lib.concatStringsSep "+" (
-    (lib.optionals enableICD [ "icd" ])
-    ++ (lib.optionals enableNOSV [ "nosv" ])
-    ++ (lib.optionals enableOVNI [ "ovni" ])
-    ++ (lib.optionals enableSPIRV [ "spirv" ])
-    ++ (lib.optionals enableTBB [ "tbb" ])
-    ++ (lib.optionals enableRemoteClient [ "server" ])
-    ++ (lib.optionals enableRemoteServer [ "client" ])
-  );
-in
-
-stdenv.mkDerivation (finalAttrs: {
-  pname = "pocl";
-  version = featureList + "-" + source.version;
-  inherit (source) src;
-
-  patches = lib.optionals useGit [
-    ./0001-cmake-use-clang-from-cmake-variable.patch
-    ./0001-cmake-do-not-use-suffix.patch
-    ./0001-cmake-native-build-tools.patch
-  ];
-
-  cmakeFlags = [
-    # TODO: all these are broken when cross compiling. Upstream has refactored
-    # all the cmake infra for cross compilation, but it's not in a release yet
-    (lib.cmakeOptionType "filepath" "WITH_LLVM_CONFIG" (
-      lib.getExe' buildLlvmPackages.llvm.dev "llvm-config"
-    ))
-    (lib.cmakeOptionType "filepath" "CLANG" (lib.getExe' buildLlvmPackages.clangUseLLVM "clang"))
-    (lib.cmakeOptionType "filepath" "CLANGXX" (lib.getExe' buildLlvmPackages.clangUseLLVM "clang++"))
-    (lib.cmakeOptionType "path" "CLANG_RESOURCE_DIR" "${llvmPackages.stdenv.cc}/resource-root")
-
-    (lib.cmakeBool "ENABLE_TESTS" finalAttrs.finalPackage.doCheck)
-
-    (lib.cmakeBool "ENABLE_RELOCATION" true)
-    (lib.cmakeBool "ENABLE_POCL_BUILDING" true)
-    (lib.cmakeBool "POCL_ICD_ABSOLUTE_PATH" true)
-
-    (lib.cmakeBool "ENABLE_TBB_DEVICE" enableTBB)
-    (lib.cmakeBool "ENABLE_ICD" enableICD)
-    (lib.cmakeBool "ENABLE_HWLOC" enableHWLOC)
-    (lib.cmakeBool "ENABLE_LTTNG" enableLTTNG)
-
-    (lib.cmakeBool "ENABLE_REMOTE_CLIENT" enableRemoteClient)
-    (lib.cmakeBool "ENABLE_REMOTE_SERVER" enableRemoteServer)
-
-    # avoid the runtime linker pulling in a different llvm e.g. from graphics drivers
-    (lib.cmakeBool "STATIC_LLVM" staticLLVM)
-  ]
-  ++ lib.optionals (enableNOSV || enableOVNI) [
-    (lib.cmakeBool "ENABLE_NOSV" enableNOSV)
-    (lib.cmakeBool "ENABLE_OVNI" enableOVNI)
-  ]
-  ++ lib.optionals (!isCross && enableDistroVariants) [
-    (lib.cmakeFeature "KERNELLIB_HOST_CPU_VARIANTS" "distro") # TODO: check if we can do it when cross compiling
-  ]
-  ++ lib.optionals isCross [
-    (lib.cmakeFeature "CMAKE_SYSTEM_NAME" "Linux")
-    (lib.cmakeFeature "CMAKE_FIND_ROOT_PATH_MODE_PROGRAM" "NEVER")
-    (lib.cmakeFeature "CMAKE_FIND_ROOT_PATH_MODE_LIBRARY" "ONLY")
-    (lib.cmakeFeature "CMAKE_FIND_ROOT_PATH_MODE_INCLUDE" "ONLY")
-    (lib.cmakeFeature "CMAKE_FIND_ROOT_PATH_MODE_PACKAGE" "ONLY")
-  ]
-  ++ lib.optionals stdenv.hostPlatform.isRiscV [
-    (lib.cmakeFeature "LLC_TRIPLE" "riscv64-unknown-linux-gnu")
-    (lib.cmakeFeature "LLC_HOST_CPU" "rv64g")
-    (lib.cmakeFeature "CLANG_MARCH_FLAG" "-march=")
-  ];
-
-  # Fixes error: ld: cannot find -lgcc / -lgcc_s when linking from libpocl on
-  # host
-  preConfigure = ''
-    cmakeFlagsArray+=(
-      -DEXTRA_HOST_LD_FLAGS="${lib.escapeShellArg (builtins.readFile "${targetPackages.stdenv.cc}/nix-support/cc-ldflags")}"
-      -DEXTRA_KERNEL_FLAGS="${lib.escapeShellArg (builtins.readFile "${targetPackages.stdenv.cc}/nix-support/cc-ldflags")}"
-    )
-  '';
-
-  nativeBuildInputs = [
-    cmake
-    getconf
-    ninja
-    pkg-config
-    python3
-  ];
-
-  buildInputs = [
-    opencl-headers
-    llvmPackages.libclang
-    llvmPackages.llvm
-  ]
-  ++ lib.optionals staticLLVM [ libxml2 ]
-  ++ lib.optionals enableNOSV [ nosv ]
-  ++ lib.optionals enableOVNI [ ovni ]
-  ++ lib.optionals enableHWLOC [ hwloc ]
-  ++ lib.optionals enableTBB [ onetbb ]
-  ++ lib.optionals enableICD [ ocl-icd ]
-  ++ lib.optionals enableLTTNG [ lttng-ust ]
-  ++ lib.optionals enableSPIRV [
-    (spirv-llvm-translator.override { inherit (llvmPackages) llvm; })
-    spirv-tools
-  ];
-
-  nativeInstallCheckInputs = [
-    writableTmpDirAsHomeHook # needed for POCL_CACHE_DIR
-  ];
-
-  doInstallCheck = true;
-
-  installCheckPhase = lib.optionalString enableICD ''
-    runHook preInstallCheck
-
-    export OCL_ICD_VENDORS=$out/etc/OpenCL/vendors
-    $out/bin/poclcc -o poclcc.cl.pocl $src/examples/poclcc/poclcc.cl
-
-    runHook postInstallCheck
-  '';
-
-  setupHook = lib.optionalDrvAttr enableICD (
-    writeText "setup-hook" ''
-      addToSearchPath OCL_ICD_VENDORS @out@/etc/OpenCL/vendors
-    ''
-  );
-
-  passthru =
-    let
-      self = finalAttrs.finalPackage;
-    in
-    {
-      updateScript = nix-update-script { };
-      git = self.override { useGit = true; };
-
-      withICD = enableICD;
-
-      test = {
-        # Run builtin tests (causes a rebuild)
-        self = self.overrideAttrs { doCheck = true; };
-
-        # Run basic test from Khronos OpenCL Conformance Test Suite
-        # WARN: despite its name, test_basic is very exhaustive, and can take more
-        # than 1 hour in a marenostrum5 node.
-        cts =
-          assert enableICD;
-          lib.genAttrs [ "api" "basic" "c11_atomics" "printf" "svm" ] (
-            name:
-            runCommand "pocl-cts-test_${name}" {
-              nativeBuildInputs = [ self ];
-              requiredSystemFeatures = [ "sys-devices" ];
-              env = {
-                POCL_DEBUG = "error,warn";
-                POCL_CACHE_DIR = "/build/pocl_cache";
-              };
-            } "${opencl-cts}/bin/Release/test_${name} | tee $out"
-          );
-      };
-    };
-
-  env.HWLOC_SYNTHETIC = lib.optionalDrvAttr enableHWLOC "node:1 core:1 pu:1";
-
-  propagatedBuildInputs = [ stdenv.cc.cc ];
-
-  meta = with lib; {
-    description = "A portable open source (MIT-licensed) implementation of the OpenCL standard";
-    homepage = "http://portablecl.org";
-    license = licenses.mit;
-    maintainers = with maintainers; [
-      leixb
-      jansol
-      xddxdd
-      bsc.maintainers.leixb
-    ];
-    platforms = platforms.linux ++ platforms.darwin;
-  };
-})

pkgs/rodinia/default.nix

@@ -1,58 +0,0 @@
-{
-  stdenv,
-  lib,
-  fetchurl,
-  ocl-icd,
-  opencl-headers,
-}:
-
-stdenv.mkDerivation {
-  pname = "rodinia-opencl";
-  version = "3.1";
-  src = fetchurl {
-    url = "http://www.cs.virginia.edu/~skadron/lava/Rodinia/Packages/rodinia_3.1.tar.bz2";
-    hash = "sha256-+uusfBHtj4/Pa/LX6FwwhvwtEfciBNbfwo3FsujyrP0=";
-  };
-
-  patches = [
-    ./rodinia-fixes.patch
-    ./rodinia-rm.patch
-  ];
-  buildInputs = [
-    opencl-headers
-    ocl-icd
-  ];
-  buildFlags = [
-    "OPENCL"
-    "--always-make"
-  ];
-
-  preBuild = ''
-    mkdir -p bin/linux/{cuda,omp,opencl}
-  '';
-
-  installPhase = ''
-    runHook preInstall
-
-    mkdir -p $out/share
-    cp -r bin data opencl $out
-    cp LICENSE README $out/share
-
-    runHook postInstall
-  '';
-
-  meta = {
-    homepage = "https://rodinia.cs.virginia.edu/";
-    description = "Test Suite of Compute-Intensive Applications with Accelerators";
-    maintainers = with lib.maintainers.bsc; [ abonerib ];
-    platforms = lib.platforms.linux;
-    license = {
-      deprecated = false;
-      free = false;
-      fullName = "Rodinia License";
-      redistributable = true;
-      shortName = "rodinia";
-      url = "https://www.cs.virginia.edu/~skadron/lava/rodinia/license.htm";
-    };
-  };
-}

pkgs/tacuda/default.nix

@@ -1,72 +0,0 @@
-{
-  backendStdenv,
-  fetchFromGitHub,
-  automake,
-  autoconf,
-  libtool,
-  gnumake,
-  autoreconfHook,
-  boost,
-  cudatoolkit,
-  libcublas,
-  cuda_cudart,
-
-  useGit ? false,
-  gitUrl ? "git@gitlab-internal.bsc.es:task-awareness/tacuda/tacuda.git",
-  gitBranch ? "main",
-  gitCommit ? "35234f9445e6149a2bd38d119841e2485d6ee05e",
-}:
-
-let
-
-  release_ver = "2.1.0";
-  release = {
-    version = release_ver;
-    src = fetchFromGitHub {
-      owner = "bsc-pm";
-      repo = "tacuda";
-      rev = release_ver;
-      hash = "sha256-Cj3EiLVJSLvRv0ydeg7Vp4SpkniEqHkcWF+YOJQ8EcM=";
-    };
-  };
-
-  git = rec {
-    version = src.shortRev;
-    src = builtins.fetchGit {
-      url = gitUrl;
-      ref = gitBranch;
-      rev = gitCommit;
-    };
-  };
-
-  source = if (useGit) then git else release;
-
-in
-
-backendStdenv.mkDerivation {
-  pname = "tacuda";
-  inherit (source) src version;
-
-  enableParallelBuilding = true;
-  separateDebugInfo = true;
-  strictDeps = true;
-
-  nativeBuildInputs = [
-    autoreconfHook
-    automake
-    autoconf
-    libtool
-    gnumake
-  ];
-
-  patches = [ ./fix_config.patch ];
-
-  configureFlags = [ "--with-cuda-include=${cudatoolkit}/include" ];
-
-  buildInputs = [
-    boost
-    libcublas
-    cuda_cudart
-  ];
-
-}

pkgs/tacuda/fix_config.patch

@@ -1,13 +0,0 @@
-diff --git a/m4/cuda.m4 b/m4/cuda.m4
-index 23f5c94..8f9b534 100644
---- a/m4/cuda.m4
-+++ b/m4/cuda.m4
-@@ -40,7 +40,7 @@ search_libs="cuda cublas cudart"
- required_libs=""
- 
- m4_foreach([function],
--           [cuInit,
-+           [
- 	    cublasSgemm,
-             cudaStreamCreate,
-             cudaLaunchKernel,

pkgs/taopencl/default.nix

@@ -1,48 +0,0 @@
-{
-  stdenv,
-  automake,
-  autoconf,
-  libtool,
-  gnumake,
-  boost,
-  mpi,
-  autoreconfHook,
-  ocl-icd,
-  opencl-headers,
-}:
-
-stdenv.mkDerivation (finalAttrs: {
-  pname = "taopencl";
-  version = finalAttrs.src.shortRev;
-
-  src = builtins.fetchGit {
-    url = "git@gitlab-internal.bsc.es:task-awareness/taopencl/taopencl.git";
-    ref = "master";
-    rev = "c3b7b32ae8fa4af7ceff598532a881f8f1490aaf";
-  };
-
-  enableParallelBuilding = true;
-  separateDebugInfo = true;
-  strictDeps = true;
-
-  configureFlags = [
-    "--with-opencl-lib=${ocl-icd}/lib"
-    "--with-opencl-include=${opencl-headers}/include"
-  ];
-
-  nativeBuildInputs = [
-    autoreconfHook
-    automake
-    autoconf
-    libtool
-    gnumake
-  ];
-
-  buildInputs = [
-    boost
-    mpi
-  ];
-
-  dontDisableStatic = true;
-  hardeningDisable = [ "all" ];
-})

pkgs/tasycl/default.nix

@@ -1,87 +0,0 @@
-{
-  lib,
-  stdenv,
-  autoconf,
-  automake,
-  autoreconfHook,
-  boost,
-  fetchFromGitHub,
-  gnumake,
-  libtool,
-  withCFlags,
-
-  useIntel ? true,
-  adaptivecpp ? null,
-  intelPackages ? null,
-
-  useGit ? false,
-  gitUrl ? "git@gitlab-internal.bsc.es:task-awareness/tasycl/tasycl.git",
-  gitBranch ? "main",
-  gitCommit ? "78f98dcf60a66e0eaa3b4ebcf55be076bec64825",
-}:
-
-assert !useIntel -> adaptivecpp != null;
-assert useIntel -> intelPackages != null;
-
-let
-  variant = if useIntel then "intel" else "acpp";
-
-  syclStdenv = withCFlags [ "-O3" ] (if useIntel then intelPackages.stdenv else stdenv);
-
-  release = rec {
-    version = "2.1.0";
-    src = fetchFromGitHub {
-      owner = "bsc-pm";
-      repo = "tasycl";
-      rev = version;
-      hash = "sha256-0kXnb0lHeQNHR27GTLbJ8xbiICLU8k2+FqEnnFSrzzo=";
-    };
-  };
-
-  git = rec {
-    version = src.shortRev;
-    src = builtins.fetchGit {
-      url = gitUrl;
-      ref = gitBranch;
-      rev = gitCommit;
-    };
-  };
-
-  source = if (useGit) then git else release;
-
-in
-
-syclStdenv.mkDerivation {
-  pname = "tasycl-${variant}";
-  inherit (source) src version;
-
-  enableParallelBuilding = true;
-  separateDebugInfo = true;
-
-  nativeBuildInputs = [
-    autoreconfHook
-    automake
-    autoconf
-    libtool
-    gnumake
-  ];
-
-  buildInputs = [
-    boost
-  ];
-
-  configureFlags = lib.optionals (!useIntel) [
-    "CXX=${lib.getExe adaptivecpp}"
-  ];
-
-  # add symlinks so we can explicitly link with tasycl-intel / tasycl-acpp
-  postInstall = ''
-    pushd $out/lib
-    for i in libtasycl* ; do
-      ln -s "$i" "''\${i/tasycl/tasycl-${variant}}"
-    done
-    popd
-  '';
-
-  hardeningDisable = [ "all" ];
-}

pkgs/unified-runtime/default.nix

@@ -1,63 +0,0 @@
-{
-  lib,
-  stdenv,
-  fetchFromGitHub,
-  cmake,
-  python3,
-  cudatoolkit,
-  libbacktrace,
-  intel-compute-runtime,
-  level-zero,
-  unified-memory-framework,
-  autoAddDriverRunpath,
-
-  enableL0 ? false,
-}:
-
-stdenv.mkDerivation rec {
-  pname = "unified-runtime";
-  version = "2025-WW45";
-
-  src = fetchFromGitHub {
-    owner = "intel";
-    repo = "llvm";
-    tag = version;
-    sha256 = "sha256-yf8pFEeNEWf9LpEhAy4vMdFDlA08x5XaCegnq+5aXRw=";
-  };
-
-  sourceRoot = "${src.name}/unified-runtime";
-
-  nativeBuildInputs = [
-    cmake
-    python3
-    libbacktrace
-    (python3.withPackages (
-      python-pkgs: with python-pkgs; [
-        lit
-        filecheck
-      ]
-    ))
-    autoAddDriverRunpath
-  ];
-
-  buildInputs = [
-    unified-memory-framework
-    cudatoolkit
-  ]
-  ++ lib.optionals enableL0 [
-    intel-compute-runtime
-    level-zero
-  ];
-
-  cmakeFlags = [
-    (lib.cmakeBool "UR_USE_EXTERNAL_UMF" true)
-    (lib.cmakeBool "UR_BUILD_TESTS" false)
-
-    (lib.cmakeBool "UR_BUILD_ADAPTER_CUDA" true)
-    (lib.cmakeBool "UR_BUILD_ADAPTER_L0" enableL0)
-
-    (lib.cmakeBool "UR_BUILD_ADAPTER_OPENCL" false)
-    (lib.cmakeBool "UR_BUILD_ADAPTER_HIP" false)
-    (lib.cmakeBool "UR_BUILD_ADAPTER_NATIVE_CPU" false)
-  ];
-}

test/compilers/hello-sycl.nix

@@ -1,91 +0,0 @@
-{
-  intelPackages,
-  writeText,
-  strace,
-  pocl,
-}:
-
-let
-  stdenv = intelPackages.stdenv;
-  hello_sycl = writeText "hello.cpp" ''
-    #include <sycl/sycl.hpp>
-
-    class hello_world;
-
-    int main(int argc, char** argv) try {
-        auto device_selector = sycl::default_selector_v;
-
-        sycl::queue queue(device_selector);
-
-        std::cout << "Running on: "
-                  << queue.get_device().get_info<sycl::info::device::name>()
-                  << std::endl;
-
-        queue.submit([&] (sycl::handler& cgh) {
-            auto os = sycl::stream{128, 128, cgh};
-            cgh.single_task<hello_world>([=]() {
-                os << "Hello World! (on device)\n";
-            });
-        });
-
-        return 0;
-    } catch (sycl::exception &e) {
-        std::cout << "SYCL exception: " << e.what() << std::endl;
-        return 0; // we expect to fail since no devices should be available;
-    }
-  '';
-in
-
-stdenv.mkDerivation (finalAttrs: {
-  version = "0.0.1";
-  name = "hello-sycl";
-  nativeBuildInputs = [
-    stdenv
-    strace
-  ];
-  src = hello_sycl;
-  dontUnpack = true;
-  dontConfigure = true;
-  NIX_DEBUG = 0;
-  buildPhase = ''
-    cp $src hello.cpp
-    set -x
-    echo CXX=$CXX
-    command -v $CXX
-    $CXX -fsycl hello.cpp -o hello
-    ./hello | tee test-output
-    set +x
-  '';
-
-  installPhase = ''
-    cp test-output $out
-  '';
-
-  passthru = {
-    withPocl = finalAttrs.finalPackage.overrideAttrs (old: {
-      nativeBuildInputs = old.nativeBuildInputs ++ [ pocl ];
-      env = (old.env or { }) // {
-        POCL_DEBUG = "error,warn";
-        POCL_CACHE_DIR = "/build/pocl_cache";
-
-        # Make PoCL report Intel vendor id so oneapi SYCL works
-        POCL_DRIVER_VERSION_OVERRIDE = "2024.18.6.0.02_160000";
-        POCL_CPU_VENDOR_ID_OVERRIDE = 32902;
-      };
-      doInstallCheck = true;
-      installCheckPhase = ''
-        grep "Hello World! (on device)" $out
-      '';
-    });
-    withIntel = finalAttrs.finalPackage.overrideAttrs (old: {
-      env = (old.env or { }) // {
-        OCL_ICD_VENDORS = intelPackages.compiler + "/etc/OpenCL/vendors";
-      };
-      doInstallCheck = true;
-      installCheckPhase = ''
-        grep "Hello World! (on device)" $out
-      '';
-
-    });
-  };
-})

test/compilers/icpx-ompss2.nix

@@ -1,110 +0,0 @@
-{
-  writeText,
-  intelPackages,
-  nodes,
-  nosv,
-  clangOmpss2Nodes,
-  strace,
-  pocl,
-}:
-
-let
-  hello_cpp = writeText "hello.cpp" ''
-    #include <cstdio>
-    #include <sycl/sycl.hpp>
-
-    int main(int argc, char** argv) try {
-        sycl::queue queue;
-
-        std::cout << "Running on: "
-                  << queue.get_device().get_info<sycl::info::device::name>()
-                  << std::endl;
-
-        #pragma oss task
-        queue.submit([&] (sycl::handler& cgh) {
-            auto os = sycl::stream{128, 128, cgh};
-            cgh.single_task<class hello_world>([=]() {
-                os << "Hello World! (on device)\n";
-            });
-        }).wait();
-
-        return 0;
-    } catch (sycl::exception &e) {
-        std::cout << "SYCL exception: " << e.what() << std::endl;
-        return 0; // we expect to fail since no devices should be available;
-    }
-
-  '';
-in
-
-intelPackages.stdenv.mkDerivation (finalAttrs: {
-  version = "0.0.1";
-  name = "hello-syclompss";
-
-  src = hello_cpp;
-
-  nativeBuildInputs = [
-    strace
-    nodes
-    nosv
-  ];
-
-  passthru = {
-    withPocl = finalAttrs.finalPackage.overrideAttrs (old: {
-      nativeBuildInputs = old.nativeBuildInputs ++ [ pocl ];
-      env = (old.env or { }) // {
-        POCL_DEBUG = "error,warn";
-        POCL_CACHE_DIR = "/build/pocl_cache";
-
-        # Make PoCL report Intel vendor id so oneapi SYCL works
-        POCL_DRIVER_VERSION_OVERRIDE = "2024.18.6.0.02_160000";
-        POCL_CPU_VENDOR_ID_OVERRIDE = 32902;
-      };
-      doInstallCheck = true;
-      installCheckPhase = ''
-        grep "Hello World! (on device)" $out
-      '';
-    });
-
-    withIntel = finalAttrs.finalPackage.overrideAttrs (old: {
-      env = (old.env or { }) // {
-        OCL_ICD_VENDORS = intelPackages.compiler + "/etc/OpenCL/vendors";
-      };
-      doInstallCheck = true;
-      installCheckPhase = ''
-        grep "Hello World! (on device)" $out
-      '';
-    });
-  };
-
-  dontUnpack = true;
-  dontConfigure = true;
-
-  # NODES requires access to /sys/devices to request NUMA information
-  requiredSystemFeatures = [ "sys-devices" ];
-
-  env.NODES_HOME = nodes;
-
-  NIX_DEBUG = 1;
-  buildPhase = ''
-    cp $src hello.cpp
-    set -x
-    echo CXX=$CXX
-    echo NODES_HOME=$NODES_HOME
-    command -v $CXX
-
-    icpx -Wno-deprecated-declarations -fsycl \
-        -fsycl-host-compiler=${clangOmpss2Nodes.forIcpx}/bin/clang++ \
-        -fsycl-host-compiler-options='-Wno-deprecated-declarations -fompss-2=libnodes' \
-        -lnodes -lnosv \
-        $NODES_HOME/lib/nodes-main-wrapper.o \
-        hello.cpp -o hello
-
-    ./hello | tee test-output
-    set +x
-  '';
-
-  installPhase = ''
-    cp test-output $out
-  '';
-})

test/compilers/opencl.c

@@ -1,127 +0,0 @@
-#include <CL/cl.h>
-#include <stdio.h>
-#include <stdlib.h>
-#include <string.h>
-
-#define BUF_LEN 128
-
-cl_int exit_err = CL_SUCCESS;
-
-#define CHECK(cmd)                                                             \
-  do {                                                                         \
-    cl_int err = cmd;                                                          \
-    if (err != CL_SUCCESS) {                                                   \
-      printf("[ERROR] " #cmd " (Error code: %d)\n"                             \
-             "@ "__FILE__                                                      \
-             ":%d",                                                            \
-             err, __LINE__);                                                   \
-      exit_err = err;                                                          \
-      goto cleanup;                                                            \
-    }                                                                          \
-  } while (0)
-
-const char *kernel_source = "__kernel void vector_add(__global const float *a, "
-                            "__global const float *b, __global float *c) {\n"
-                            "    int gid = get_global_id(0);\n"
-                            "    c[gid] = a[gid] + b[gid];\n"
-                            "}\n";
-
-cl_int test_kernel_compilation(cl_platform_id platform) {
-  cl_device_id device = NULL;
-  cl_context context = NULL;
-  cl_program program = NULL;
-  cl_int err = CL_SUCCESS;
-  char device_name[BUF_LEN];
-
-  // Get first device for this platform
-  CHECK(clGetDeviceIDs(platform, CL_DEVICE_TYPE_ALL, 1, &device, NULL));
-
-  // Get device name
-  CHECK(clGetDeviceInfo(device, CL_DEVICE_NAME, sizeof(device_name),
-                        device_name, NULL));
-  printf("    Device: %s\n", device_name);
-
-  context = clCreateContext(NULL, 1, &device, NULL, NULL, &err);
-  CHECK(err);
-
-  program = clCreateProgramWithSource(context, 1, &kernel_source, NULL, &err);
-  CHECK(err);
-
-  err = clBuildProgram(program, 1, &device, NULL, NULL, NULL);
-  if (err != CL_SUCCESS) {
-    printf("      [ERROR] Kernel compilation failed (Error code: %d)\n", err);
-
-    // Build log
-    size_t log_size;
-    CHECK(clGetProgramBuildInfo(program, device, CL_PROGRAM_BUILD_LOG, 0, NULL,
-                                &log_size));
-    char *log = (char *)malloc(log_size);
-    CHECK(clGetProgramBuildInfo(program, device, CL_PROGRAM_BUILD_LOG, log_size,
-                                log, NULL));
-    printf("      Build log:\n%s\n", log);
-    free(log);
-    goto cleanup;
-  }
-
-  printf("      [OK] Kernel compiled successfully!\n");
-
-cleanup:
-  if (program)
-    clReleaseProgram(program);
-  if (context)
-    clReleaseContext(context);
-  printf("\n");
-
-  return exit_err;
-}
-
-int main() {
-  cl_uint num_platforms;
-  cl_platform_id *platforms = NULL;
-
-  // Get number of platforms
-  CHECK(clGetPlatformIDs(0, NULL, &num_platforms));
-
-  printf("Found %d OpenCL platform(s)\n\n", num_platforms);
-
-  if (num_platforms == 0) {
-    printf("No OpenCL platforms found!\n");
-    return EXIT_FAILURE;
-  }
-
-  // Allocate memory for platforms
-  platforms = (cl_platform_id *)malloc(sizeof(cl_platform_id) * num_platforms);
-
-  // Get platform IDs
-  CHECK(clGetPlatformIDs(num_platforms, platforms, NULL));
-
-  // Query each platform and test kernel compilation
-  for (cl_uint i = 0; i < num_platforms; i++) {
-    char platform_name[BUF_LEN];
-    char platform_vendor[BUF_LEN];
-    char platform_version[BUF_LEN];
-
-    CHECK(clGetPlatformInfo(platforms[i], CL_PLATFORM_NAME,
-                            sizeof(platform_name), platform_name, NULL));
-    CHECK(clGetPlatformInfo(platforms[i], CL_PLATFORM_VENDOR,
-                            sizeof(platform_vendor), platform_vendor, NULL));
-    CHECK(clGetPlatformInfo(platforms[i], CL_PLATFORM_VERSION,
-                            sizeof(platform_version), platform_version, NULL));
-
-    printf("Platform %d: %s\n", i, platform_name);
-    printf("  Vendor: %s\n", platform_vendor);
-    printf("  Version: %s\n", platform_version);
-
-    // Test kernel compilation
-    CHECK(test_kernel_compilation(platforms[i]));
-  }
-
-cleanup:
-  if (platforms)
-    free(platforms);
-
-  if (exit_err == CL_SUCCESS)
-    return EXIT_SUCCESS;
-
-  return EXIT_FAILURE;
-}

test/compilers/opencl.nix

@@ -1,104 +0,0 @@
-{
-  stdenv,
-  ocl-icd,
-  opencl-headers,
-  pocl,
-  clinfo,
-  runCommand,
-  lib,
-}:
-
-stdenv.mkDerivation (finalAttrs: {
-  pname = "opencl-pocl-test";
-  version = "1.0.0";
-
-  src = ./opencl.c;
-
-  dontUnpack = true;
-  dontConfigure = true;
-
-  buildInputs = [
-    ocl-icd
-    opencl-headers
-  ];
-
-  buildPhase = ''
-    runHook preBuild
-
-    $CC -Wall -Wextra -D CL_TARGET_OPENCL_VERSION=100 $src -o ocl-hello -lOpenCL
-
-    runHook postBuild
-  '';
-
-  installPhase = ''
-    runHook preInstall
-
-    mkdir -p $out/bin
-    cp ocl-hello $out/bin
-
-    runHook postInstall
-  '';
-
-  passthru = {
-    test-icd =
-      runCommand "custom-clinfo"
-        {
-          nativeBuildInputs =
-            assert !(lib.hasPrefix "pocl" ocl-icd.pname);
-            [
-              clinfo
-              finalAttrs.finalPackage
-              pocl
-            ];
-
-          env = {
-            POCL_DEBUG = "error,warn";
-            POCL_CACHE_DIR = "/build/pocl_cache";
-          };
-
-          requiredSystemFeatures = [ "sys-devices" ];
-        }
-
-        ''
-          set -x
-
-          mkdir $out
-
-          clinfo -l >$out/clinfo
-          clinfo >$out/clinfo-full
-
-          ocl-hello >$out/hello
-
-          for i in $out/*; do
-            grep "Portable Computing Language" $i
-          done
-
-          echo $OCL_ICD_VENDORS >$out/env
-
-          grep "pocl.*/etc/OpenCL/vendors" $out/env
-
-          set +x
-        '';
-    # this needs: ocl-icd = pocl-noicd
-    test-noicd =
-      runCommand "custom-clinfo"
-        {
-          nativeBuildInputs = [
-            finalAttrs.finalPackage
-          ];
-
-          env = {
-            POCL_DEBUG = "error,warn";
-            POCL_CACHE_DIR = "/build/pocl_cache";
-          };
-
-          requiredSystemFeatures = [ "sys-devices" ];
-        }
-
-        ''
-          ocl-hello >$out
-
-          grep "Portable Computing Language" $out
-        '';
-  };
-})

test/compilers/pocl.nix

@@ -1,27 +0,0 @@
-{
-  runCommand,
-  pocl,
-  clinfo,
-}:
-
-runCommand "clinfo-pocl"
-  {
-    nativeBuildInputs = [
-      clinfo
-      pocl
-    ];
-
-    requiredSystemFeatures = [ "sys-devices" ];
-
-    env = {
-      POCL_DEBUG = "error,warn";
-      POCL_CACHE_DIR = "/build/pocl_cache";
-    };
-  }
-  ''
-    echo $OCL_ICD_VENDORS
-    clinfo >$out
-
-    # check that we have PoCL:
-    grep "Portable Computing Language" $out
-  ''

test/compilers/sycl-ls.nix

@@ -1,40 +0,0 @@
-{
-  intelPackages,
-  pocl,
-  runCommandWith,
-  symlinkJoin,
-  clinfo,
-}:
-
-runCommandWith
-  {
-    name = "sycl-ls";
-    inherit (intelPackages) stdenv;
-    runLocal = true;
-    derivationArgs = {
-      nativeBuildInputs = [ clinfo ];
-      env = {
-        OCL_ICD_VENDORS = symlinkJoin {
-          name = "vendors";
-          paths = builtins.map (p: p + "/etc/OpenCL/vendors") [
-            intelPackages.compiler
-            pocl
-          ];
-        };
-
-        POCL_DRIVER_VERSION_OVERRIDE = "2024.18.6.0.02_160000";
-        POCL_CPU_VENDOR_ID_OVERRIDE = 32902;
-        POCL_DEBUG = "error,warn";
-        POCL_CACHE_DIR = "/build/pocl_cache";
-
-        HWLOC_SYNTHETIC = "node:1 core:1 pu:1";
-      };
-    };
-  }
-  # bash
-  ''
-    clinfo -l | tee -a $out
-    sycl-ls | tee -a $out
-
-    test x6 = x"$(cat $out | wc -l)" # 2 lines per clinfo entry and 1 per sycl-ls
-  ''