ompss: no bintools intel

This should be a noop

flake.lock

@@ -2,10 +2,10 @@
   "nodes": {
     "nixpkgs": {
       "locked": {
-        "lastModified": 1752436162,
+        "lastModified": 1736867362,
-        "narHash": "sha256-Kt1UIPi7kZqkSc5HVj6UY5YLHHEzPBkgpNUByuyxtlw=",
+        "narHash": "sha256-i/UJ5I7HoqmFMwZEH6vAvBxOrjjOJNU739lnZnhUln8=",
-        "path": "/nix/store/zk8v61cpk1wprp9ld5ayc1g5fq4pdkwv-source",
+        "path": "/nix/store/2csx2kkb2hxyxhhmg2xs9jfyypikwwk6-source",
-        "rev": "dfcd5b901dbab46c9c6e80b265648481aafb01f8",
+        "rev": "9c6b49aeac36e2ed73a8c472f1546f6d9cf1addc",
         "type": "path"
       },
       "original": {

flake.nix

@@ -2,25 +2,16 @@
   inputs.nixpkgs.url = "nixpkgs";
 
   outputs = { self, nixpkgs, ...}:
-    let
+  let
+    pkgs = import nixpkgs {
       # For now we only support x86
       system = "x86_64-linux";
-      pkgs = import nixpkgs {
+      overlays = [ self.overlays.default ];
-        inherit system;
+    };
-        overlays = [ self.overlays.default ];
+  in
-      };
-    in
     {
       bscOverlay = import ./overlay.nix;
       overlays.default = self.bscOverlay;
-      # full nixpkgs with our overlay applied
+      legacyPackages.x86_64-linux = pkgs;
-      legacyPackages.${system} = pkgs;
-
-      hydraJobs = {
-        inherit (self.legacyPackages.${system}.bsc-ci) test pkgs;
-      };
-
-      # propagate nixpkgs lib, so we can do bscpkgs.lib
-      inherit (nixpkgs) lib;
     };
 }

overlay.nix

@@ -106,9 +106,7 @@ in bscPkgs // {
       };
     };
 
-    pkgs = filterAttrs (_: isDerivation) bscPkgs;
+    pkgs = final.runCommand "ci-pkgs" { }
-
-    pkgsList = final.runCommand "ci-pkgs" { }
       "printf '%s\n' ${toString (collect isDerivation bscPkgs)} > $out";
 
     tests = final.runCommand "ci-tests" { }
@@ -116,7 +114,7 @@ in bscPkgs // {
 
     all = final.runCommand "ci-all" { }
     ''
-      deps="${toString [ final.bsc-ci.pkgsList final.bsc-ci.tests ]}"
+      deps="${toString [ final.bsc-ci.pkgs final.bsc-ci.tests ]}"
       cat $deps
       printf '%s\n' $deps > $out
     '';

pkgs/bench6/default.nix

@@ -1,20 +1,14 @@
 {
   stdenv
-, bigotes
 , cmake
 , clangOmpss2
-, openmp
-, openmpv
 , nanos6
 , nodes
-, nosv
 , mpi
 , tampi
-, openblas
-, ovni
 , gitBranch ? "master"
 , gitURL ? "ssh://git@bscpm04.bsc.es/rarias/bench6.git"
-, gitCommit ? "bf29a53113737c3aa74d2fe3d55f59868faea7b4"
+, gitCommit ? "1e6ce2aa8ad7b4eef38df1581d7ec48a8815f85d"
 }:
 
 stdenv.mkDerivation rec {
@@ -27,28 +21,9 @@ stdenv.mkDerivation rec {
     rev = gitCommit;
   };
 
-  buildInputs = [
+  buildInputs = [ cmake clangOmpss2 nanos6 nodes mpi tampi ];
-    bigotes
-    cmake
-    clangOmpss2
-    openmp
-    openmpv
-    nanos6
-    nodes
-    nosv
-    mpi
-    tampi
-    openblas
-    openblas.dev
-    ovni
-  ];
-
-  env = {
-    NANOS6_HOME = nanos6;
-    NODES_HOME = nodes;
-    NOSV_HOME = nosv;
-  };
 
+  enableParallelBuilding = false;
   cmakeFlags = [
     "-DCMAKE_C_COMPILER=clang"
     "-DCMAKE_CXX_COMPILER=clang++"

pkgs/gpi-2/default.nix

@@ -34,8 +34,6 @@ stdenv.mkDerivation rec {
 
   enableParallelBuilding = true;
 
-  patches = [ ./rdma-core.patch ./max-mem.patch ];
-
   preConfigure = ''
     patchShebangs autogen.sh
     ./autogen.sh

pkgs/gpi-2/max-mem.patch

@@ -1,10 +0,0 @@
---- a/tests/tests/segments/max_mem.c	2025-09-12 13:30:53.449353591 +0200
-+++ b/tests/tests/segments/max_mem.c	2025-09-12 13:33:49.750352401 +0200
-@@ -1,5 +1,7 @@
- #include <test_utils.h>
- 
-+gaspi_size_t gaspi_get_system_mem (void);
-+
- /* Test allocates 45% of system memory and creates a segment that
-    large or if several ranks per node exist, divided among that
-    number */

pkgs/gpi-2/rdma-core.patch

@@ -1,12 +0,0 @@
---- a/src/devices/ib/GPI2_IB.h	2025-09-12 13:25:31.564181121 +0200
-+++ b/src/devices/ib/GPI2_IB.h	2025-09-12 13:24:49.105422150 +0200
-@@ -26,6 +26,9 @@ along with GPI-2. If not, see <http://ww
- 
- #include "GPI2_Dev.h"
- 
-+/* Missing prototype as driver.h is now private */
-+int ibv_read_sysfs_file(const char *dir, const char *file, char *buf, size_t size);
-+
- #define GASPI_GID_INDEX   (0)
- #define PORT_LINK_UP      (5)
- #define MAX_INLINE_BYTES  (128)

pkgs/intel-oneapi/2023.nix

@@ -1,5 +1,6 @@
 { stdenv
 , fetchurl
+, ncurses
 , lib
 , dpkg
 , rsync
@@ -9,9 +10,12 @@
 , hwloc
 , zlib
 , autoPatchelfHook
+, symlinkJoin
 , libfabric
-, gcc13
+, gcc
+, gcc7
 , wrapCCWith
+, linuxHeaders
 }:
 
 # The distribution of intel packages is a mess. We are doing the installation
@@ -26,8 +30,6 @@
 
 let
 
-  gcc = gcc13;
-
   v = {
     hpckit   = "2023.1.0";
     compiler = "2023.1.0";
@@ -299,8 +301,10 @@ let
       "intel-oneapi-compiler-dpcpp-cpp-and-cpp-classic-common-${version}"
       "intel-oneapi-compiler-dpcpp-cpp-and-cpp-classic-runtime-${version}"
       "intel-oneapi-compiler-dpcpp-cpp-classic-fortran-shared-runtime-${version}"
+      "intel-oneapi-compiler-shared-${version}"
+      "intel-oneapi-compiler-shared-common-${version}"
+      "intel-oneapi-compiler-shared-runtime-${version}"
     ];
-    dontCheckForBrokenSymlinks = true;
     # From https://aur.archlinux.org/packages/intel-oneapi-compiler:
     # - intel-oneapi-compiler-cpp-eclipse-cfg-2023.0.0-25370_all.deb
     # + intel-oneapi-compiler-dpcpp-cpp-2023.0.0-2023.0.0-25370_amd64.deb
@@ -316,9 +320,9 @@ let
     # - intel-oneapi-compiler-fortran-common-2023.0.0-2023.0.0-25370_all.deb
     # - intel-oneapi-compiler-fortran-runtime-2023.0.0-2023.0.0-25370_amd64.deb
     # - intel-oneapi-compiler-fortran-runtime-2023.0.0-25370_amd64.deb
-    # - intel-oneapi-compiler-shared-2023.0.0-2023.0.0-25370_amd64.deb
+    # + intel-oneapi-compiler-shared-2023.0.0-2023.0.0-25370_amd64.deb
-    # - intel-oneapi-compiler-shared-common-2023.0.0-2023.0.0-25370_all.deb
+    # + intel-oneapi-compiler-shared-common-2023.0.0-2023.0.0-25370_all.deb
-    # - intel-oneapi-compiler-shared-runtime-2023.0.0-2023.0.0-25370_amd64.deb
+    # + intel-oneapi-compiler-shared-runtime-2023.0.0-2023.0.0-25370_amd64.deb
     # - intel-oneapi-dpcpp-cpp-2023.0.0-2023.0.0-25370_amd64.deb
     # - intel-oneapi-openmp-2023.0.0-2023.0.0-25370_amd64.deb
     # - intel-oneapi-openmp-common-2023.0.0-2023.0.0-25370_all.deb
@@ -385,10 +389,17 @@ let
         echo "-L${intel-compiler-shared}/lib" >> $out/nix-support/cc-ldflags
         echo "-L${cc}/lib" >> $out/nix-support/cc-ldflags
 
+        echo "--gcc-toolchain=${mygcc.cc}" >> $out/nix-support/libcxx-cxxflags
+
+        for dir in ${mygcc.cc}/include/c++/*; do
+          echo "-isystem $dir" >> $out/nix-support/libcxx-cxxflags
+        done
+        for dir in ${mygcc.cc}/include/c++/*/${targetConfig}; do
+          echo "-isystem $dir" >> $out/nix-support/libcxx-cxxflags
+        done
+
         # Need the gcc in the path
-        # FIXME: We should find a better way to modify the PATH instead of using
+        echo 'export "PATH=${mygcc}/bin:$PATH"' >> $out/nix-support/cc-wrapper-hook
-        # this ugly hack. See https://jungle.bsc.es/git/rarias/bscpkgs/issues/9
-        echo 'path_backup="${mygcc}/bin:$path_backup"' >> $out/nix-support/cc-wrapper-hook
 
         # Disable hardening by default
         echo "" > $out/nix-support/add-hardening.sh

pkgs/intel-oneapi/patch_intel.nix

@@ -5,7 +5,7 @@
 , autoPatchelfHook
 , wrapCCWith
 , overrideCC
-, gcc13
+, gcc
 , hwloc
 , libelf
 , libffi_3_3
@@ -33,8 +33,6 @@ makeOverridable (
 let
   inherit (builtins) attrValues filter mapAttrs removeAttrs;
 
-  gcc = gcc13;
-
   __components = removeAttrs components ["extraPackages"];
   _components = __components;
   # _components = lib.traceSeqN 2 {
@@ -52,7 +50,6 @@ let
         echo "-L${gcc.cc.lib}/lib" >> $out/nix-support/cc-ldflags
         echo "-L${cc}/lib" >> $out/nix-support/cc-ldflags
 
-        # echo "--gcc-toolchain=${gcc.cc}" >> $out/nix-support/libcxx-cxxflags
         echo "--gcc-toolchain=${gcc.cc}" >> $out/nix-support/cc-cflags
 
         # For some reason, If we don't resolve the realpath things go wrong
@@ -75,12 +72,12 @@ let
           echo "-isystem $dir" >> $out/nix-support/libcxx-cxxflags
         done
 
-        # FIXME: We should find a better way to modify the PATH instead of using
+        # Need the gcc in the path
-        # this ugly hack. See https://jungle.bsc.es/git/rarias/bscpkgs/issues/9
+        echo 'export "PATH=${gcc}/bin:$PATH"' >> $out/nix-support/cc-wrapper-hook
-        echo 'path_backup="${gcc.cc}/bin:$path_backup"' >> $out/nix-support/cc-wrapper-hook
 
         # Disable hardening by default
         echo "" > $out/nix-support/add-hardening.sh
+
       '' + extraBuildCommands;
     } // (removeAttrs args ["cc" "extraBuildCommands" "extraInstall"])
     ).overrideAttrs (old: {
@@ -113,8 +110,6 @@ stdenvNoCC.mkDerivation (finalAttrs: {
 
   autoPatchelfIgnoreMissingDeps = [ "libhwloc.so.5" "libcuda.so.1" "libze_loader.so.1" ];
 
-  dontCheckForBrokenSymlinks = true;
-
   nativeBuildInputs = [ autoPatchelfHook ];
   installPhase = ''
     cp -r $src/opt/intel/oneapi/ $out
@@ -162,7 +157,6 @@ stdenvNoCC.mkDerivation (finalAttrs: {
 
         sed -i 's/.*isCxx=0/isCxx=1/' $out/bin/icpx
 
-        # oneMath looks for sycl libraries in bin/../lib
         ln -s ${finalAttrs.finalPackage.pkgs.compiler}/lib $out/lib
         ln -s ${finalAttrs.finalPackage.pkgs.compiler}/include $out/include
       '';

pkgs/llvm-ompss2/clang.nix

@@ -16,19 +16,19 @@
 , useGit ? false
 , gitUrl ? "ssh://git@bscpm04.bsc.es/llvm-ompss/llvm-mono.git"
 , gitBranch ? "master"
-, gitCommit ? "880e2341c56bad1dc14e8c369fb3356bec19018e"
+, gitCommit ? "8c0d267c04d7fc3fb923078f510fcd5f4719a6cc"
 }:
 
 let
   stdenv = llvmPackages_latest.stdenv;
 
   release = rec {
-    version = "2025.06";
+    version = "2024.11";
     src = fetchFromGitHub {
       owner = "bsc-pm";
       repo = "llvm";
       rev = "refs/tags/github-release-${version}";
-      hash = "sha256-ww9PpRmtz/M9IyLiZ8rAehx2UW4VpQt+svf4XfKBzKo=";
+      hash = "sha256-pF0qa987nLkIJPUrXh1srzBkLPfb31skIegD0bl34Kg=";
     };
   };
 

pkgs/llvm-ompss2/default.nix

@@ -2,7 +2,6 @@
   stdenv
 , lib
 , gcc
-, gcc13
 , clangOmpss2Unwrapped
 , writeShellScript
 , openmp ? null
@@ -40,12 +39,34 @@ let
   cc = clangOmpss2Unwrapped;
   gccVersion = with versions; let v = gcc.version; in concatStringsSep "." [(major v) (minor v) (patch v)];
 
+  resetIntelCCFlags = let tconf = builtins.replaceStrings ["-"] ["_"] targetConfig;
+  in writeShellScript "remove-intel.sh" ''
+    if [ "$NIX_CC_WRAPPER_INTEL" = 1 ]; then
+      unset NIX_CFLAGS_COMPILE_${tconf}
+      unset NIX_CFLAGS_COMPILE_BEFORE_${tconf}
+      unset NIX_CFLAGS_LINK_${tconf}
+      unset NIX_CXXSTDLIB_COMPILE_${tconf}
+      unset NIX_CXXSTDLIB_LINK_${tconf}
+      unset NIX_GNATFLAGS_COMPILE_${tconf}
+
+      unset NIX_CC_WRAPPER_FLAGS_SET_${tconf}
+    # unset NIX_BINTOOLS_WRAPPER_FLAGS_${tconf}
+    fi
+  '';
+
+in wrapCCWith {
+  inherit cc bintools;
+  # extraPackages adds packages to depsTargetTargetPropagated
+  extraPackages = optional (openmp != null) openmp;
   extraBuildCommands = ''
     echo "-target ${targetConfig}" >> $out/nix-support/cc-cflags
     echo "-B${gcc.cc}/lib/gcc/${targetConfig}/${gccVersion}" >> $out/nix-support/cc-cflags
     echo "-L${gcc.cc}/lib/gcc/${targetConfig}/${gccVersion}" >> $out/nix-support/cc-ldflags
     echo "-L${gcc.cc.lib}/lib" >> $out/nix-support/cc-ldflags
 
+    for dir in ${gcc.cc}/lib/gcc/${targetConfig}/*/include; do
+      echo "-isystem $dir" >> $out/nix-support/cc-cflags
+    done
     for dir in ${gcc.cc}/include/c++/*; do
       echo "-isystem $dir" >> $out/nix-support/libcxx-cxxflags
     done
@@ -56,51 +77,19 @@ let
     echo "--gcc-toolchain=${gcc}" >> $out/nix-support/cc-cflags
 
     wrap clang++  $wrapper $ccPath/clang++
+
+    sed -i 's|# Flirting.*|&\nsource ${resetIntelCCFlags}|' $out/bin/clang
+    sed -i 's|# Flirting.*|&\nsource ${resetIntelCCFlags}|' $out/bin/clang++
+
+    echo "" > $out/nix-support/add-hardening.sh
+
+  '' + lib.optionalString (openmp != null) ''
+    echo "export OPENMP_RUNTIME=${ompname}" >> $out/nix-support/cc-wrapper-hook
+  '' + optionalString (ompss2rt != null) ''
+    echo "export OMPSS2_RUNTIME=${rtname}" >> $out/nix-support/cc-wrapper-hook
+    echo "export ${homevar}=${ompss2rt}"   >> $out/nix-support/cc-wrapper-hook
+  '' + optionalString (ompss2rt != null && ompss2rt.pname == "nodes") ''
+    echo "export NOSV_HOME=${ompss2rt.nosv}" >> $out/nix-support/cc-wrapper-hook
   '';
+}
 
-  envExports = lib.optionalString (openmp != null) ''
-      echo "export OPENMP_RUNTIME=${ompname}" >> $out/nix-support/cc-wrapper-hook
-    '' + optionalString (ompss2rt != null) ''
-      echo "export OMPSS2_RUNTIME=${rtname}" >> $out/nix-support/cc-wrapper-hook
-      echo "export ${homevar}=${ompss2rt}"   >> $out/nix-support/cc-wrapper-hook
-    '' + optionalString (ompss2rt != null && ompss2rt.pname == "nodes") ''
-      echo "export NOSV_HOME=${ompss2rt.nosv}" >> $out/nix-support/cc-wrapper-hook
-    '';
-
-  extraPackages = optional (openmp != null) openmp;
-
-  wrappedCC = wrapCCWith {
-    # extraPackages adds packages to depsTargetTargetPropagated
-    inherit cc bintools extraPackages;
-    extraBuildCommands = extraBuildCommands + envExports;
-  };
-
-  resetIntelCCFlags = let tconf = builtins.replaceStrings ["-"] ["_"] targetConfig;
-  in writeShellScript "remove-intel.sh" ''
-    if [ "''${NIX_CC_WRAPPER_INTEL:-0}" = 1 ]; then
-      unset NIX_CFLAGS_COMPILE_${tconf}
-      unset NIX_CC_WRAPPER_FLAGS_SET_${tconf}
-
-      if (( "''${NIX_DEBUG:-0}" >= 1 )); then
-        echo "ompss2: cleaned NIX_CFLAGS_COMPILE_${tconf} (invokation from intel compiler detected)"
-      fi
-    fi
-  '';
-
-  intelExtraBuildCommands = ''
-    sed -i 's|# Flirting.*|source ${resetIntelCCFlags}\n\n&|' $out/bin/clang
-    sed -i 's|# Flirting.*|source ${resetIntelCCFlags}\n\n&|' $out/bin/clang++
-  '';
-
-  wrappedCCIntel = wrapCCWith {
-    inherit bintools extraPackages;
-    cc = cc.override { gcc = gcc13; }; # Intel uses gcc13, so we have to match it
-    # extraPackages adds packages to depsTargetTargetPropagated
-    extraBuildCommands = intelExtraBuildCommands + envExports;
-  };
-
-in wrappedCC.overrideAttrs (oldAttrs: {
-    passthru = oldAttrs.passthru // {
-      forIcpx = wrappedCCIntel;
-    };
-  })

pkgs/lmbench/default.nix

@@ -17,12 +17,16 @@ stdenv.mkDerivation rec {
     sha256 = "sha256-SzwplRBO3V0R3m3p15n71ivYBMGoLsajFK2TapYxdqk=";
   };
 
+  postUnpack = ''
+    export sourceRoot="$sourceRoot/src"
+  '';
+
   postPatch = ''
     sed -i "s@/bin/rm@rm@g" $(find . -name Makefile)
   '';
 
   buildInputs = [ libtirpc ];
-  patches = [ ./fix-install.patch ./gcc-14.patch ];
+  patches = [ ./fix-install.patch ];
 
   hardeningDisable = [ "all" ];
 
@@ -30,9 +34,7 @@ stdenv.mkDerivation rec {
 
   preBuild = ''
     makeFlagsArray+=(
-      -C src
       BASE=$out
-      CFLAGS=-Wno-implicit-int
       CPPFLAGS=-I${libtirpc.dev}/include/tirpc
       LDFLAGS=-ltirpc
     )

pkgs/lmbench/fix-install.patch

@@ -1,5 +1,5 @@
---- a/src/Makefile
+--- a/Makefile
-+++ b/src/Makefile
++++ b/Makefile
 @@ -144,6 +144,7 @@ install-target:
  	if [ ! -d $(BASE)/include ]; then mkdir $(BASE)/include; fi
  	if [ ! -d $(BASE)/lib ]; then mkdir $(BASE)/lib; fi

pkgs/lmbench/gcc-14.patch

@@ -1,77 +0,0 @@
-From a3c6e7d303cd8368e8d4e35be7cbc1997e801257 Mon Sep 17 00:00:00 2001
-From: Rodrigo Arias Mallo <rodrigo.arias@bsc.es>
-Date: Mon, 21 Jul 2025 17:38:58 +0200
-Subject: [PATCH] Misc fixes to build with gcc 14
-
----
- src/bench.h      | 2 ++
- src/lat_select.c | 2 +-
- src/lib_debug.c  | 1 +
- src/lib_sched.c  | 2 +-
- src/lib_timing.c | 2 +-
- 5 files changed, 6 insertions(+), 3 deletions(-)
-
-diff --git a/src/bench.h b/src/bench.h
-index 8166408..4da9079 100644
---- a/src/bench.h
-+++ b/src/bench.h
-@@ -320,4 +320,6 @@ extern int handle_scheduler(int childno, int benchproc, int nbenchprocs);
- extern char *rpc_xact_1();
- extern char *client_rpc_xact_1();
- 
-+void lmbench_usage(int argc, char *argv[], char* usage);
-+
- #endif /* _BENCH_H */
-diff --git a/src/lat_select.c b/src/lat_select.c
-index 583b505..39df369 100644
---- a/src/lat_select.c
-+++ b/src/lat_select.c
-@@ -164,7 +164,7 @@ doit(iter_t iterations, void * cookie)
- 	state_t * 	state = (state_t *)cookie;
- 	fd_set		nosave;
- 	static struct timeval tv;
--	static count = 0;
-+	static int count = 0;
- 	
- 	tv.tv_sec = 0;
- 	tv.tv_usec = 0;
-diff --git a/src/lib_debug.c b/src/lib_debug.c
-index e8347dd..cf65312 100644
---- a/src/lib_debug.c
-+++ b/src/lib_debug.c
-@@ -1,5 +1,6 @@
- #include "bench.h"
- #include "lib_debug.h"
-+#include <math.h>
- 
- /*
-  * return micro-seconds / iteration at the the fraction point.
-diff --git a/src/lib_sched.c b/src/lib_sched.c
-index aa83ae0..4f16bbf 100644
---- a/src/lib_sched.c
-+++ b/src/lib_sched.c
-@@ -91,7 +91,7 @@ handle_scheduler(int childno, int benchproc, int nbenchprocs)
- 			     childno * (nbenchprocs + 1) + benchproc);
- 	} else {
- 		/* default action: do nothing */
--		return;
-+		return 0;
- 	}
- 
- 	return sched_pin(cpu % sched_ncpus());
-diff --git a/src/lib_timing.c b/src/lib_timing.c
-index af8cf68..7ec9652 100644
---- a/src/lib_timing.c
-+++ b/src/lib_timing.c
-@@ -1623,7 +1623,7 @@ bread(void* buf, long nbytes)
- void
- touch(char *buf, int nbytes)
- {
--	static	psize;
-+	static int psize;
- 
- 	if (!psize) {
- 		psize = getpagesize();
--- 
-2.49.0
-

pkgs/nanos6/default.nix

@@ -19,7 +19,7 @@
 , useGit ? false
 , gitUrl ? "ssh://git@bscpm04.bsc.es/nanos6/nanos6"
 , gitBranch ? "master"
-, gitCommit ? "f82762b66c82b5174a8eaad33f6c2f335ac759b4"
+, gitCommit ? "9f54c988e0a8b9c011d9d526acdb8d76f18fcae4"
 }:
 
 assert enableJemalloc -> (jemallocNanos6 != null);
@@ -28,12 +28,12 @@ with lib;
 
 let
   release = rec {
-    version = "4.3";
+    version = "4.2";
     src = fetchFromGitHub {
       owner = "bsc-pm";
       repo = "nanos6";
       rev = "version-${version}";
-      hash = "sha256-/c6WiKBsAo/01uvMRmjv0PMucbrgvaGmbxlPE6q+dfE=";
+      hash = "sha256-tBrRGLCjSFYdmVGPAC2DzYY6HJyZGUOMeykujafn7+4=";
     };
   };
 

pkgs/nosv/default.nix

@@ -6,26 +6,24 @@
 , pkg-config
 , numactl
 , hwloc
-, papi
-, enablePapi ? true
 , cacheline ? 64 # bits
 , ovni ? null
 , useGit ? false
 , gitUrl ? "git@gitlab-internal.bsc.es:nos-v/nos-v.git"
 , gitBranch ? "master"
-, gitCommit ? "9f47063873c3aa9d6a47482a82c5000a8c813dd8"
+, gitCommit ? "cfd361bd1dd30c96da405e6bbaa7e78f5f93dfda"
 }:
 
 with lib;
 
 let
   release = rec {
-    version = "3.2.0";
+    version = "3.1.0";
     src = fetchFromGitHub {
       owner = "bsc-pm";
       repo = "nos-v";
       rev = "${version}";
-      hash = "sha256-yaz92426EM8trdkBJlISmAoG9KJCDTvoAW/HKrasvOw=";
+      hash = "sha256-Pkre+ZZsREDxJLCoIoPN1HQDuUa2H1IQyKB3omg6qaU=";
     };
   };
 
@@ -58,5 +56,5 @@ in
       numactl
       hwloc
       ovni
-    ] ++ lib.optionals enablePapi [ papi ];
+    ];
   }

pkgs/onemath/default.nix

@@ -1,51 +1,40 @@
 { lib
+, intelPackages
+, withCFlags
 , fetchFromGitHub
 , cmake
-, withCFlags
+, cudaPackages
-, intelPackages
+, enableNvidia ? true
-
+, withHipTargets ? null # only one target at a time supported
-, mklSupport ? true
+, rocmPackages
-
+, enableMkl ? true
-, config
-
-, cudaSupport ? config.cudaSupport
-, cudaPackages ? { }
-
-, rocmSupport ? config.rocmSupport
-, hipTargets ? null # only one target at a time supported
-, rocmPackages ? { }
 }:
 
 let
-  # rocmSupport is not enough, we need a specific target
+  enableHip = withHipTargets != null;
-  enableHip = rocmSupport && hipTargets != null;
 
-  stdenv = withCFlags (lib.optionals cudaSupport [ "--cuda-path=${cudaPackages.cudatoolkit}" ]) intelPackages.stdenv;
+  stdenv = withCFlags (lib.optionals enableNvidia [ "--cuda-path=${cudaPackages.cudatoolkit}" ]) intelPackages.stdenv;
 in
-
-  # at least one backend has to be enabled
-  assert mklSupport || cudaSupport || enableHip;
-
 stdenv.mkDerivation rec {
   pname = "oneMath";
-  version = "0.8";
+  version = "0.7";
 
   src = fetchFromGitHub {
     owner = "uxlfoundation";
     repo = "oneMath";
     rev = "v${version}";
-    sha256 = "sha256-xK8lKI3oqKlx3xtvdScpMq+HXAuoYCP0BZdkEqnJP5o=";
+    sha256 = "sha256-De04PUmI68Jx4rJ+MRb+RepayZCapgnouCUCrAu6G38=";
   };
 
   cmakeFlags = [
-    (lib.cmakeBool "ENABLE_MKLCPU_BACKEND"    mklSupport)
+    (lib.cmakeBool "ENABLE_MKLCPU_BACKEND"    enableMkl)
-    (lib.cmakeBool "ENABLE_MKLGPU_BACKEND"    mklSupport)
+    (lib.cmakeBool "ENABLE_MKLGPU_BACKEND"    enableMkl)
 
-    (lib.cmakeBool "ENABLE_CUBLAS_BACKEND"    cudaSupport)
+    (lib.cmakeBool "ENABLE_CUBLAS_BACKEND"    enableNvidia)
-    (lib.cmakeBool "ENABLE_CUFFT_BACKEND"     cudaSupport)
+    (lib.cmakeBool "ENABLE_CUFFT_BACKEND"     enableNvidia)
-    (lib.cmakeBool "ENABLE_CURAND_BACKEND"    cudaSupport)
+    (lib.cmakeBool "ENABLE_CURAND_BACKEND"    enableNvidia)
-    (lib.cmakeBool "ENABLE_CUSOLVER_BACKEND"  cudaSupport)
+    (lib.cmakeBool "ENABLE_CUSOLVER_BACKEND"  enableNvidia)
-    (lib.cmakeBool "ENABLE_CUSPARSE_BACKEND"  cudaSupport)
+    (lib.cmakeBool "ENABLE_CUSPARSE_BACKEND"  enableNvidia)
 
     (lib.cmakeBool "ENABLE_ROCBLAS_BACKEND"   enableHip)
     (lib.cmakeBool "ENABLE_ROCFFT_BACKEND"    enableHip)
@@ -56,11 +45,11 @@ stdenv.mkDerivation rec {
     (lib.cmakeBool "BUILD_FUNCTIONAL_TESTS" false)
     (lib.cmakeBool "BUILD_EXAMPLES" false)
   ] ++ lib.optionals enableHip [
-    (lib.cmakeFeature "HIP_TARGETS" hipTargets)
+    (lib.cmakeFeature "HIP_TARGETS" withHipTargets)
   ];
 
   nativeBuildInputs = [ cmake ];
-  buildInputs = lib.optionals (mklSupport) [
+  buildInputs = lib.optionals (enableMkl) [
     intelPackages.mkl
     intelPackages.tbb
   ] ++ lib.optionals (enableHip) [
@@ -70,7 +59,7 @@ stdenv.mkDerivation rec {
     rocmPackages.rocsolver
     rocmPackages.rocrand
     rocmPackages.rocsparse
-  ] ++ lib.optionals (cudaSupport) [
+  ] ++ lib.optionals (enableNvidia) [
     (lib.getDev cudaPackages.cuda_cudart)
     cudaPackages.cudatoolkit
 

pkgs/ovni/default.nix

@@ -7,7 +7,7 @@
 , useGit ? false
 , gitBranch ? "master"
 , gitUrl ? "ssh://git@bscpm04.bsc.es/rarias/ovni.git"
-, gitCommit ? "e4f62382076f0cf0b1d08175cf57cc0bc51abc61"
+, gitCommit ? "a7103f8510d1ec124c3e01ceb47d1e443e98bbf4"
 , enableDebug ? false
 # Only enable MPI if the build is native (fails on cross-compilation)
 , useMpi ? (stdenv.buildPlatform.canExecute stdenv.hostPlatform)
@@ -17,13 +17,13 @@ with lib;
 
 let
   release = rec {
-    version = "1.12.0";
+    version = "1.11.0";
     src = fetchFromGitHub {
       owner = "bsc-pm";
       repo = "ovni";
       rev = "${version}";
-      hash = "sha256-H04JvsVKrdqr3ON7JhU0g17jjlg/jzQ7eTfx9vUNd3E=";
+      hash = "sha256-DEZUK1dvbPGH5WYkZ2hpP5PShkMxXkHOqMwgYUHHxeM=";
-    } // { shortRev = "a73afcf"; };
+    } // { shortRev = "a7103f8"; };
   };
 
   git = rec {

pkgs/paraver/default.nix

@@ -1,6 +1,5 @@
 {
   stdenv
-, fetchFromGitHub
 , autoreconfHook
 , boost
 , libxml2
@@ -19,23 +18,14 @@ let
 in
 stdenv.mkDerivation rec {
   pname = "wxparaver";
-  version = "4.12.0";
+  version = "4.11.2";
 
-  src = fetchFromGitHub {
+  src = builtins.fetchGit {
-    owner = "bsc-performance-tools";
+    url = "https://github.com/bsc-performance-tools/wxparaver.git";
-    repo = "wxparaver";
+    rev = "129e6b4a4f061e5a319049db8db1620f5de3bd70"; # v4.11.2 (missing tag)
-    rev = "v${version}";
+    ref = "master";
-    sha256 = "sha256-YsO5gsuEFQdki3lQudEqgo5WXOt/fPdvNw5OxZQ86Zo=";
   };
 
-  patches = [
-    ./do-not-steal-focus-on-redraw.patch
-
-    # Fix for boost >=1.87 (thanks to gamezelda)
-    # https://aur.archlinux.org/cgit/aur.git/commit/?h=wxparaver&id=b0dcd08c472536e0a1a3cc1dfbc4c77d9f5e0d47
-    ./fix-boost-87.patch
-  ];
-
   hardeningDisable = [ "all" ];
 
   # Fix the PARAVER_HOME variable

pkgs/paraver/do-not-steal-focus-on-redraw.patch

@@ -1,26 +0,0 @@
-From 2b185e1b5ce52808b3026334851dbcd5a640ed4d Mon Sep 17 00:00:00 2001
-From: aleixbonerib <aleix.boneribo@bsc.es>
-Date: Mon, 10 Jun 2024 20:59:45 +0200
-Subject: [PATCH] fix: do not set focus on redraw
-
-Some wm can change the window size without focusing. Right now, when the
-plot is resized it takes back focus.
----
- src/gtimeline.cpp | 1 -
- 1 file changed, 1 deletion(-)
-
-diff --git a/src/gtimeline.cpp b/src/gtimeline.cpp
-index 23ebef2..a896066 100644
---- a/src/gtimeline.cpp
-+++ b/src/gtimeline.cpp
-@@ -899,7 +899,6 @@ void gTimeline::redraw()
- 
-   drawZone->Refresh();
- 
--  SetFocus();
- }
- 
- 
--- 
-2.44.1
-

pkgs/paraver/dont-expand-colors.patch

@@ -11,7 +11,7 @@ diff --git a/api/semanticcolor.cpp b/api/semanticcolor.cpp
 index 9f86960..22859eb 100644
 --- a/api/semanticcolor.cpp
 +++ b/api/semanticcolor.cpp
-@@ -295,8 +295,9 @@ rgb SemanticColor::getColor( PRV_UINT32 pos ) const
+@@ -232,8 +232,9 @@ rgb CodeColor::getColor( PRV_UINT32 pos ) const
  {
    if( pos == 0 && ParaverConfig::getInstance()->getColorsTimelineUseZero() )
      return ParaverConfig::getInstance()->getColorsTimelineColorZero();
@@ -22,26 +22,26 @@ index 9f86960..22859eb 100644
 +  return colors[ pos + 1 ];
  }
  
- void SemanticColor::setColor( PRV_UINT32 whichPos, rgb whichColor )
+ void CodeColor::setColor( PRV_UINT32 whichPos, rgb whichColor )
-@@ -314,6 +315,12 @@ void SemanticColor::setColor( PRV_UINT32 whichPos, rgb whichColor )
+@@ -250,6 +251,12 @@ void CodeColor::setColor( PRV_UINT32 whichPos, rgb whichColor )
    colors[ whichPos ] = whichColor;
  }
  
-+void SemanticColor::cutAfter( PRV_UINT32 pos )
++void CodeColor::cutAfter( PRV_UINT32 pos )
 +{
 +  if ( pos < colors.size() )
 +    colors.erase( colors.begin() + pos, colors.end() );
 +}
 +
- void SemanticColor::setCustomColor( TSemanticValue whichValue, rgb color ) 
+ void CodeColor::setCustomColor( TSemanticValue whichValue, rgb color ) 
  {
    customPalette[ whichValue ] = color;
 diff --git a/api/semanticcolor.h b/api/semanticcolor.h
 index a079556..bddf3d8 100644
 --- a/api/semanticcolor.h
 +++ b/api/semanticcolor.h
-@@ -114,6 +114,7 @@ class SemanticColor
+@@ -98,6 +98,7 @@ class CodeColor: public SemanticColor
-     // Code Color methods
+ 
      PRV_UINT32 getNumColors() const;
      void setColor( PRV_UINT32 pos, rgb color );
 +    void cutAfter( PRV_UINT32 pos );
@@ -61,7 +61,7 @@ index b0d2050..ee2ab69 100644
    for ( auto it : semanticColors )
    {
      std::tie( tmpColor.red, tmpColor.green, tmpColor.blue ) = it.second;
-     mySemanticColor.setColor( it.first, tmpColor );
+     myCodeColor.setColor( it.first, tmpColor );
 +	if (it.first > maxValue)
 +      maxValue = it.first;
    }
@@ -69,7 +69,7 @@ index b0d2050..ee2ab69 100644
 +  // Cut the palette after the highest defined value, so there are no
 +  // extra expanded values
 +  if ( !pcfParser.expandColors )
-+	mySemanticColor.cutAfter(maxValue);
++	myCodeColor.cutAfter(maxValue);
 +
    myEventLabels = EventLabels( pcfParser );
    myStateLabels = StateLabels( pcfParser );

pkgs/paraver/fix-boost-87.patch

@@ -1,87 +0,0 @@
-From 7ecd888e2ebb9e8c5582851d3c50bff61022708e Mon Sep 17 00:00:00 2001
-From: =?UTF-8?q?Joan=20Bruguera=20Mic=C3=B3?= <joanbrugueram@gmail.com>
-Date: Sat, 29 Mar 2025 18:14:25 +0000
-Subject: [PATCH] tutorialsdownload: Fix Boost ASIO 1.87.0 removals
-
----
- src/tutorialsdownload.cpp | 25 ++++++++++++-------------
- 1 file changed, 12 insertions(+), 13 deletions(-)
-
-diff --git a/src/tutorialsdownload.cpp b/src/tutorialsdownload.cpp
-index a1921fd..6ce9dc2 100644
---- a/src/tutorialsdownload.cpp
-+++ b/src/tutorialsdownload.cpp
-@@ -121,13 +121,13 @@ void TutorialsProgress::updateInstall( int whichValue )
- class client
- {
-   public:
--    client( boost::asio::io_service& io_service,
-+    client( boost::asio::io_context& io_context,
-             boost::asio::ssl::context& context,
-             const std::string& server, const std::string& path,
-             ofstream& storeFile,
-             TutorialsProgress *progress )
--            : resolver_( io_service ),
--              socket_( io_service, context ),
-+            : resolver_( io_context ),
-+              socket_( io_context, context ),
-               store_( storeFile ),
-               progress_( progress )
-     {
-@@ -143,8 +143,7 @@ class client
- 
-         // Start an asynchronous resolve to translate the server and service names
-         // into a list of endpoints.
--        tcp::resolver::query query( server, "https" );
--        resolver_.async_resolve( query,
-+        resolver_.async_resolve( server, "https",
-                                  boost::bind( &client::handle_resolve,
-                                               this,
-                                               boost::asio::placeholders::error,
-@@ -154,7 +153,7 @@ class client
-   private:
- 
-     void handle_resolve( const boost::system::error_code& err,
--                         tcp::resolver::iterator endpoint_iterator )
-+                         const tcp::resolver::results_type& endpoints )
-     {
-       if ( !err )
-       {
-@@ -162,7 +161,7 @@ class client
-         socket_.set_verify_callback( boost::bind( &client::verify_certificate, this, _1, _2 ) );
- 
-         boost::asio::async_connect( socket_.lowest_layer(), 
--                                    endpoint_iterator,
-+                                    endpoints,
-                                     boost::bind( &client::handle_connect, 
-                                                  this,
-                                                  boost::asio::placeholders::error ) );
-@@ -536,9 +535,9 @@ bool TutorialsDownload::downloadTutorialsList() const
-     boost::asio::ssl::context ctx( boost::asio::ssl::context::sslv23 );
-     ctx.set_default_verify_paths();
- 
--    boost::asio::io_service io_service;
--    client c( io_service, ctx, server, path, storeFile, nullptr );
--    io_service.run();
-+    boost::asio::io_context io_context;
-+    client c( io_context, ctx, server, path, storeFile, nullptr );
-+    io_context.run();
- 
-     doneDownload = true;
-   }
-@@ -580,9 +579,9 @@ bool TutorialsDownload::download( const TutorialData& whichTutorial, string& tut
-     boost::asio::ssl::context ctx( boost::asio::ssl::context::sslv23 );
-     ctx.set_default_verify_paths();
- 
--    boost::asio::io_service io_service;
--    client c( io_service, ctx, std::string( server.mb_str() ), std::string( path.mb_str() ), storeFile, &progress );
--    io_service.run();
-+    boost::asio::io_context io_context;
-+    client c( io_context, ctx, std::string( server.mb_str() ), std::string( path.mb_str() ), storeFile, &progress );
-+    io_context.run();
-   }
-   catch ( ParaverKernelException& e )
-   {
--- 
-2.49.0
-

pkgs/paraver/fix-libxml2-deprecation.patch

@@ -1,23 +0,0 @@
-commit 60aa3ffa05f6b40db191a880e9e622d608744c1f
-Author: Aleix Boné <aleix.boneribo@bsc.es>
-Date:   Sun Jul 21 12:11:30 2025 +0200
-
-    fix libxml2 deprecated macro
-
-diff --git a/configure.ac b/configure.ac
-index 7fe1876..3ce1091 100644
---- a/configure.ac
-+++ b/configure.ac
-@@ -46,7 +46,10 @@ AC_PROG_CPP
- AC_PROG_CXXCPP
- AC_PROG_SED
- 
--AM_PATH_XML2
-+PKG_PROG_PKG_CONFIG
-+PKG_CHECK_MODULES([XML], [libxml-2.0])
-+
-+AC_SUBST(XML_CPPFLAGS, $XML_CFLAGS)
- 
- AX_BOOST_BASE(1.36)
- AX_BOOST_SERIALIZATION
-

pkgs/paraver/kernel.nix

@@ -1,32 +1,32 @@
 {
   stdenv
-, fetchFromGitHub
 , autoreconfHook
 , boost
 , libxml2
 , xml2
+, wxGTK32
 , autoconf
 , automake
 , pkg-config
 , zlib
 }:
 
+let
+  wx = wxGTK32;
+in
 stdenv.mkDerivation rec {
   pname = "paraver-kernel";
-  version = "4.12.0";
+  version = "${src.shortRev}";
 
-  src = fetchFromGitHub {
+  src = builtins.fetchGit {
-    owner = "bsc-performance-tools";
+    url = "https://github.com/bsc-performance-tools/paraver-kernel.git";
-    repo = "paraver-kernel";
+    rev = "2e167da3cee78ca11e31b74faefb23f12bac2b8c"; # master (missing tag)
-    rev = "v${version}";
+    ref = "master";
-    sha256 = "sha256-Xs7g8ITZhPt00v7o2WlTddbou8C8Rc9kBMFpl2WsCS4=";
   };
 
   patches = [
     # https://github.com/bsc-performance-tools/paraver-kernel/pull/11
-    # TODO: add this back if it's still relevant
+    ./dont-expand-colors.patch
-    # ./dont-expand-colors.patch
-    ./fix-libxml2-deprecation.patch
   ];
 
   hardeningDisable = [ "all" ];

pkgs/tampi/default.nix

@@ -15,7 +15,7 @@
 , useGit ? false
 , gitUrl ? "ssh://git@bscpm04.bsc.es/interoperability/tampi.git"
 , gitBranch ? "master"
-, gitCommit ? "f6455db9d3124ae36e715a4874fd49720e79f20a"
+, gitCommit ? "a5c93bf8ab045b71ad4a8d5e2c991ce774db5cbc"
 }:
 
 with lib;
@@ -24,12 +24,12 @@ assert enableOvni -> (ovni != null);
 
 let
   release = rec {
-    version = "4.1";
+    version = "4.0";
     src = fetchFromGitHub {
       owner = "bsc-pm";
       repo = "tampi";
       rev = "v${version}";
-      hash = "sha256-SwfPSnwcZnRnSgNvCD5sFSUJRpWINqI5I4adj5Hh+XY=";
+      hash = "sha256-R7ew5tsrxGReTvOeeZe1FD0oThBhOHoDGv6Mo2sbmDg=";
     };
   };
   git = rec {

pkgs/tasycl/default.nix

@@ -9,6 +9,7 @@
 , gnumake
 , autoreconfHook
 , boost
+, opensycl ? null
 , adaptivecpp ? null
 , useIntel ? true
 
@@ -18,9 +19,17 @@
 , gitCommit ? "78f98dcf60a66e0eaa3b4ebcf55be076bec64825"
 }:
 
-assert (useIntel || adaptivecpp != null);
+assert (useIntel || opensycl != null || adaptivecpp != null);
 
 let
+  # opensycl has migrated to adaptivecpp
+  acpp-flags =
+    if adaptivecpp == null then
+      [ "-L${opensycl}/lib" "-lhipSYCL-rt" "-I${opensycl}/include" ]
+    else
+      [ "-L${adaptivecpp}/lib" "-lacpp-rt" "-I${adaptivecpp}/include" ]
+  ;
+
   variant = if useIntel then "intel" else "acpp";
 
   syclStdenv =
@@ -29,7 +38,7 @@ let
       # intel disables all optimizations
       withCFlags ["-O3"] intelPackages.stdenv
     else
-      withCFlags [ "-L${adaptivecpp}/lib" "-lacpp-rt" "-I${adaptivecpp}/include" ] stdenv
+      withCFlags acpp-flags stdenv
   ;
 
   release = rec {

test/compilers/icpx-ompss2.nix

@@ -1,4 +1,4 @@
-{ writeText, intelPackages, nodes, nosv, clangOmpss2Nodes, strace }:
+{ writeText, intelPackages, nodes, nosv, clangOmpss2Nodes, clangOmpss2Unwrapped, clangOmpss2, strace }:
 
 let
   hello_cpp = writeText "hello.cpp" ''
@@ -44,10 +44,6 @@ intelPackages.stdenv.mkDerivation {
   dontUnpack = true;
   dontConfigure = true;
 
-  # NODES requires access to /sys/devices to request NUMA information. It will
-  # fail to run otherwise, so we disable the sandbox for this test.
-  __noChroot = true;
-
   env.NODES_HOME = nodes;
 
   NIX_DEBUG = 0;
@@ -58,9 +54,9 @@ intelPackages.stdenv.mkDerivation {
     echo NODES_HOME=$NODES_HOME
     command -v $CXX
 
-    icpx -Wno-deprecated-declarations -fsycl \
+    icpx -fsycl \
-        -fsycl-host-compiler=${clangOmpss2Nodes.forIcpx}/bin/clang++ \
+        -fsycl-host-compiler=${clangOmpss2Nodes}/bin/clang++ \
-        -fsycl-host-compiler-options='-Wno-deprecated-declarations -fompss-2=libnodes' \
+        -fsycl-host-compiler-options='-fompss-2=libnodes' \
         -lnodes -lnosv \
         $NODES_HOME/lib/nodes-main-wrapper.o \
         hello.cpp -o hello