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rplot: add support for gziped datasets

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This commit is contained in:
Rodrigo Arias 2021-03-30 16:35:47 +02:00
parent 5ac581b573
commit b7dcf7bc69
1 changed files with 9 additions and 2 deletions
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11
garlic/pp/rplot.nix
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@ -31,9 +31,16 @@ in stdenv.mkDerivation {
export FONTCONFIG_PATH=${fontconfig.out}/etc/fonts export FONTCONFIG_PATH=${fontconfig.out}/etc/fonts
mkdir -p $out mkdir -p $out
cd $out cd $out
ln -s ${dataset} input dataset="${dataset}"
ln -s $dataset input
Rscript --vanilla ${script} ${dataset} Rscript --vanilla ${script} ${dataset}
jq -c .total_time input |\
if [ "''${dataset##*.}" == gz ]; then
gunzip --stdout $dataset
else
cat $dataset
fi | jq -c .total_time |\
awk '{s+=$1} END {printf "%f\n", s/60}' > total_job_time_minutes awk '{s+=$1} END {printf "%f\n", s/60}' > total_job_time_minutes
''; '';
} }